R Markdown

Load stratification NMDS envfit analyses packages

# Load the knitr package if not already loaded
library(knitr)

# Source the R Markdown files
knit("/Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.Rmd", output = "/Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.md")
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## processing file: /Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.Rmd
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## output file: /Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.md
## [1] "/Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.md"
knit("/Users/bailey/Documents/research/fish_biodiversity/src/analyses/dbFD_results.Rmd", output = "/Users/bailey/Documents/research/fish_biodiversity/src/analyses/dbFD_results.md")
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## output file: /Users/bailey/Documents/research/fish_biodiversity/src/analyses/dbFD_results.md
## [1] "/Users/bailey/Documents/research/fish_biodiversity/src/analyses/dbFD_results.md"
# library(devtools)
# install_github("pmartinezarbizu/pairwiseAdonis/pairwiseAdonis")

#Analyses
library(vegan)
library(pairwiseAdonis)
## Loading required package: cluster
## 
## Attaching package: 'cluster'
## The following object is masked from 'package:maps':
## 
##     votes.repub
library(picante)
## Loading required package: nlme
## 
## Attaching package: 'nlme'
## The following object is masked from 'package:dplyr':
## 
##     collapse
library(ade4)
library(adespatial)
## Registered S3 methods overwritten by 'adegraphics':
##   method         from
##   biplot.dudi    ade4
##   kplot.foucart  ade4
##   kplot.mcoa     ade4
##   kplot.mfa      ade4
##   kplot.pta      ade4
##   kplot.sepan    ade4
##   kplot.statis   ade4
##   scatter.coa    ade4
##   scatter.dudi   ade4
##   scatter.nipals ade4
##   scatter.pco    ade4
##   score.acm      ade4
##   score.mix      ade4
##   score.pca      ade4
##   screeplot.dudi ade4
## Registered S3 method overwritten by 'spdep':
##   method   from
##   plot.mst ape
## Registered S3 methods overwritten by 'adespatial':
##   method             from       
##   plot.multispati    adegraphics
##   print.multispati   ade4       
##   summary.multispati ade4
## 
## Attaching package: 'adespatial'
## The following object is masked from 'package:ade4':
## 
##     multispati
#Graphing
library(ggplot2)
library(viridis)
library(ggrepel)

Load stratification NMDS envfit analyses functions

Need to run this function for downstream analyses in this Markdown file

# Function p.adjust.envfit
# Calculates adjusted P values for results stored in envfit object,
# created using envfit function from vegan, which fits supplementary variables
# onto axes of unconstrained ordination. 
# Arguments: 
# x - envfit object
# method - method for correction of multiple testing issue (default = 'bonferroni',
#          see ''?p.adjust' for more options)
# n - optional, number of tests for which to correct; if not given, the number is
#          taken as the number of tests conducted by envfit function (for both vectors and factors).
# Author: David Zeleny
p.adjust.envfit <- function (x, method = 'bonferroni', n)
{
  x.new <- x
  if (!is.null (x$vectors)) pval.vectors <- x$vectors$pvals else pval.vectors <- NULL
  if (!is.null (x$factors)) pval.factors <- x$factors$pvals else pval.factors <- NULL
  if (missing (n)) n <- length (pval.vectors) + length (pval.factors)
  if (!is.null (x$vectors)) x.new$vectors$pvals <- p.adjust (x$vectors$pvals, method = method, n = n)
  if (!is.null (x$factors)) x.new$factors$pvals <- p.adjust (x$factors$pvals, method = method, n = n)
  cat ('Adjustment of significance by', method, 'method')
  return (x.new)
}

Incidence dissimilarity distances

# 1.BCM (S), 2.CLM (S), 3.FLK (M), 4.GLK (S), 5.HLM (S), 6.HLO (M), 7.IBK (O), 8.LLN (M), 9.LLNC (O), 10.MLN (M), 11.NCN (O), 12.NLK (S), 13.NLN (M), 14.NLU (M), 15.OLO (M), 16.OLOO (O), 17.OTM (S), 18.OTMO (O), 19.RCA (O), 20.REF (R), 21.SLN (S), 22.TLN (S), 23.ULN (M), 24.Ocean sites, 25.Mixed lakes, 26.Stratified lakes

### Regular
## Jaccard
# All sites 
jpres_dist <- vegdist(presabs_lake[-c(20,24:26),], method = "jaccard", binary = TRUE)
# Mixed and stratified lakes
jpresms_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "jaccard", binary = TRUE)
# Ocean sites and mixed lakes
jpresom_dist <- vegdist(presabs_lake[c(3,6:11,13:16,18:19,23),], method = "jaccard", binary = TRUE)
# Stratified lakes and ocean sites
jpresso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "jaccard", binary = TRUE)
# Stratified lakes
jpress_dist <- vegdist(presabs_lake[c(1:2,4,5,12,17,21:22),], method = "jaccard", binary = TRUE)

## Dice-Sørensen
# All sites
spres_dist <- vegdist(presabs_lake[-c(20,24:26),], method = "bray", binary = TRUE)
# Mixed and stratified lakes
spresms_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "bray", binary = TRUE)
# Ocean sites and mixed lakes
spresom_dist <- vegdist(presabs_lake[c(3,6:11,13:16,18:19,23),], method = "bray", binary = TRUE)
# Stratified lakes and ocean sites
spresso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "bray", binary = TRUE)


### Environmental -c(9,16,18,20)
## Jaccard
# All sites
jprese_dist <- vegdist(presabs_lake[-c(9,16,18,20,24:26),], method = "jaccard", binary = TRUE)
# Mixed and stratified lakes
jpresems_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "jaccard", binary = TRUE)
# Ocean sites and mixed lakes
jpreseom_dist <- vegdist(presabs_lake[c(3,6:8,10:11,13:15,19,23),], method = "jaccard", binary = TRUE)
# Stratified lakes and ocean sites
jpreseso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,11:12,17,19,21:22),], method = "jaccard", binary = TRUE)

## Dice-Sørensen
# All sites
sprese_dist <- vegdist(presabs_lake[-c(9,16,18,20,24:26),], method = "bray", binary = TRUE)
# Mixed and stratified lakes
spresems_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "bray", binary = TRUE)
# Ocean sites and mixed lakes
spreseom_dist <- vegdist(presabs_lake[c(3,6:8,10:11,13:15,19,23),], method = "bray", binary = TRUE)
# Stratified lakes and ocean sites
spreseso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,11:12,17,19,21:22),], method = "bray", binary = TRUE)


### Biogeographic -c(8,20)
## Jaccard
# All sites
jpresb_dist <- vegdist(presabs_lake[-c(8,20,24:26),], method = "jaccard", binary = TRUE)
# Mixed and stratified lakes
jpresbms_dist <- vegdist(presabs_lake[c(1:6,10,12:15,17,21:23),], method = "jaccard", binary = TRUE)
# Ocean sites and mixed lakes
jpresbom_dist <- vegdist(presabs_lake[c(3,6:7,9:11,13:16,18:19,23),], method = "jaccard", binary = TRUE)
# Stratified lakes and ocean sites
jpresbso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "jaccard", binary = TRUE)

## Dice-Sørensen
# All sites
spresb_dist <- vegdist(presabs_lake[-c(8,20,24:26),], method = "bray", binary = TRUE)
# Mixed and stratified lakes
spresbms_dist <- vegdist(presabs_lake[c(1:6,10,12:15,17,21:23),], method = "bray", binary = TRUE)
# Ocean sites and mixed lakes
spresbom_dist <- vegdist(presabs_lake[c(3,6:7,9:11,13:16,18:19,23),], method = "bray", binary = TRUE)
# Stratified lakes and ocean sites
spresbso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "bray", binary = TRUE)

Incidence NMDS

To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.

### Regular
## Jaccard
# All sites 
jpres_NMDS <- metaMDS(jpres_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.09056778 
## Run 1 stress 0.1081235 
## Run 2 stress 0.0898531 
## ... New best solution
## ... Procrustes: rmse 0.02579958  max resid 0.08091755 
## Run 3 stress 0.1049304 
## Run 4 stress 0.1055025 
## Run 5 stress 0.09172738 
## Run 6 stress 0.1044942 
## Run 7 stress 0.1065492 
## Run 8 stress 0.09196771 
## Run 9 stress 0.09030384 
## ... Procrustes: rmse 0.01541363  max resid 0.04708793 
## Run 10 stress 0.1055026 
## Run 11 stress 0.09172721 
## Run 12 stress 0.09056777 
## Run 13 stress 0.09186388 
## Run 14 stress 0.09038436 
## Run 15 stress 0.1064196 
## Run 16 stress 0.09194912 
## Run 17 stress 0.1060172 
## Run 18 stress 0.1083909 
## Run 19 stress 0.09145366 
## Run 20 stress 0.0911877 
## Run 21 stress 0.1066895 
## Run 22 stress 0.1043691 
## Run 23 stress 0.09056095 
## Run 24 stress 0.09056094 
## Run 25 stress 0.09049502 
## Run 26 stress 0.08976357 
## ... New best solution
## ... Procrustes: rmse 0.008064314  max resid 0.02709489 
## Run 27 stress 0.09030395 
## Run 28 stress 0.090495 
## Run 29 stress 0.09059968 
## Run 30 stress 0.09599495 
## Run 31 stress 0.1044939 
## Run 32 stress 0.09194928 
## Run 33 stress 0.1071633 
## Run 34 stress 0.107042 
## Run 35 stress 0.09056104 
## Run 36 stress 0.1099845 
## Run 37 stress 0.09038457 
## Run 38 stress 0.09196521 
## Run 39 stress 0.09109515 
## Run 40 stress 0.104369 
## Run 41 stress 0.1043694 
## Run 42 stress 0.1049917 
## Run 43 stress 0.1074567 
## Run 44 stress 0.09172719 
## Run 45 stress 0.09248343 
## Run 46 stress 0.1049917 
## Run 47 stress 0.1068171 
## Run 48 stress 0.09042047 
## Run 49 stress 0.09248342 
## Run 50 stress 0.09015808 
## ... Procrustes: rmse 0.01479886  max resid 0.04508014 
## Run 51 stress 0.09109528 
## Run 52 stress 0.09118757 
## Run 53 stress 0.1055029 
## Run 54 stress 0.1055384 
## Run 55 stress 0.09056105 
## Run 56 stress 0.09090439 
## Run 57 stress 0.09049525 
## Run 58 stress 0.09056117 
## Run 59 stress 0.09145362 
## Run 60 stress 0.1044938 
## Run 61 stress 0.1081226 
## Run 62 stress 0.0904205 
## Run 63 stress 0.09059969 
## Run 64 stress 0.104992 
## Run 65 stress 0.09049512 
## Run 66 stress 0.1074571 
## Run 67 stress 0.1049294 
## Run 68 stress 0.09056777 
## Run 69 stress 0.1070394 
## Run 70 stress 0.1082082 
## Run 71 stress 0.08985331 
## ... Procrustes: rmse 0.008045202  max resid 0.02682587 
## Run 72 stress 0.1055388 
## Run 73 stress 0.09056779 
## Run 74 stress 0.09059981 
## Run 75 stress 0.1076414 
## Run 76 stress 0.1081637 
## Run 77 stress 0.1070393 
## Run 78 stress 0.09056116 
## Run 79 stress 0.09194912 
## Run 80 stress 0.09248341 
## Run 81 stress 0.09599514 
## Run 82 stress 0.09056101 
## Run 83 stress 0.0903843 
## Run 84 stress 0.104369 
## Run 85 stress 0.09042048 
## Run 86 stress 0.1043691 
## Run 87 stress 0.09066137 
## Run 88 stress 0.1066899 
## Run 89 stress 0.09089979 
## Run 90 stress 0.1077497 
## Run 91 stress 0.09056094 
## Run 92 stress 0.09056103 
## Run 93 stress 0.09059968 
## Run 94 stress 0.10669 
## Run 95 stress 0.1074489 
## Run 96 stress 0.09056102 
## Run 97 stress 0.09049523 
## Run 98 stress 0.1092545 
## Run 99 stress 0.1059893 
## Run 100 stress 0.09145368 
## Run 101 stress 0.0905611 
## Run 102 stress 0.09059981 
## Run 103 stress 0.1049299 
## Run 104 stress 0.09545582 
## Run 105 stress 0.1049299 
## Run 106 stress 0.09042046 
## Run 107 stress 0.1049923 
## Run 108 stress 0.08976357 
## ... New best solution
## ... Procrustes: rmse 6.237325e-05  max resid 0.0001038647 
## ... Similar to previous best
## Run 109 stress 0.09056111 
## Run 110 stress 0.0924834 
## Run 111 stress 0.1055386 
## Run 112 stress 0.1083693 
## Run 113 stress 0.09022718 
## ... Procrustes: rmse 0.01098145  max resid 0.04091155 
## Run 114 stress 0.1077492 
## Run 115 stress 0.09056103 
## Run 116 stress 0.1049294 
## Run 117 stress 0.09145362 
## Run 118 stress 0.09189851 
## Run 119 stress 0.09109518 
## Run 120 stress 0.09056097 
## Run 121 stress 0.09545607 
## Run 122 stress 0.0903843 
## Run 123 stress 0.1081243 
## Run 124 stress 0.09545591 
## Run 125 stress 0.09049512 
## Run 126 stress 0.1049302 
## Run 127 stress 0.0914537 
## Run 128 stress 0.09194941 
## Run 129 stress 0.09109525 
## Run 130 stress 0.09030382 
## Run 131 stress 0.1081643 
## Run 132 stress 0.1066895 
## Run 133 stress 0.09056094 
## Run 134 stress 0.1070394 
## Run 135 stress 0.09145369 
## Run 136 stress 0.1066892 
## Run 137 stress 0.090304 
## Run 138 stress 0.09088793 
## Run 139 stress 0.09145371 
## Run 140 stress 0.09056099 
## Run 141 stress 0.1049918 
## Run 142 stress 0.108124 
## Run 143 stress 0.1068174 
## Run 144 stress 0.09172717 
## Run 145 stress 0.09042049 
## Run 146 stress 0.1068171 
## Run 147 stress 0.1055026 
## Run 148 stress 0.0906214 
## Run 149 stress 0.1066894 
## Run 150 stress 0.1076417 
## Run 151 stress 0.1083688 
## Run 152 stress 0.09172719 
## Run 153 stress 0.1051249 
## Run 154 stress 0.09089985 
## Run 155 stress 0.09317788 
## Run 156 stress 0.09545614 
## Run 157 stress 0.09062136 
## Run 158 stress 0.0898531 
## ... Procrustes: rmse 0.008062615  max resid 0.02726822 
## Run 159 stress 0.1076741 
## Run 160 stress 0.1043691 
## Run 161 stress 0.09015806 
## ... Procrustes: rmse 0.01478303  max resid 0.04501115 
## Run 162 stress 0.1049921 
## Run 163 stress 0.0973576 
## Run 164 stress 0.0919493 
## Run 165 stress 0.09056105 
## Run 166 stress 0.1049301 
## Run 167 stress 0.1070394 
## Run 168 stress 0.08985313 
## ... Procrustes: rmse 0.008062342  max resid 0.02723384 
## Run 169 stress 0.107457 
## Run 170 stress 0.09545617 
## Run 171 stress 0.09109524 
## Run 172 stress 0.09090433 
## Run 173 stress 0.09038451 
## Run 174 stress 0.1059895 
## Run 175 stress 0.09248346 
## Run 176 stress 0.1096485 
## Run 177 stress 0.09066138 
## Run 178 stress 0.08976356 
## ... New best solution
## ... Procrustes: rmse 3.31987e-05  max resid 6.141394e-05 
## ... Similar to previous best
## Run 179 stress 0.09056094 
## Run 180 stress 0.1049307 
## Run 181 stress 0.0904952 
## Run 182 stress 0.09634398 
## Run 183 stress 0.09056104 
## Run 184 stress 0.1070623 
## Run 185 stress 0.09038449 
## Run 186 stress 0.1083944 
## Run 187 stress 0.09073176 
## Run 188 stress 0.09049518 
## Run 189 stress 0.09022711 
## ... Procrustes: rmse 0.01097073  max resid 0.04085012 
## Run 190 stress 0.09049531 
## Run 191 stress 0.1076744 
## Run 192 stress 0.09015806 
## ... Procrustes: rmse 0.01476881  max resid 0.04496002 
## Run 193 stress 0.09015815 
## ... Procrustes: rmse 0.01482088  max resid 0.04516027 
## Run 194 stress 0.09042047 
## Run 195 stress 0.09186409 
## Run 196 stress 0.09070657 
## Run 197 stress 0.09056098 
## Run 198 stress 0.09049514 
## Run 199 stress 0.1081638 
## Run 200 stress 0.09015808 
## ... Procrustes: rmse 0.0147501  max resid 0.04489627 
## Run 201 stress 0.09056095 
## Run 202 stress 0.09073434 
## Run 203 stress 0.1055381 
## Run 204 stress 0.09090003 
## Run 205 stress 0.09059972 
## Run 206 stress 0.09145371 
## Run 207 stress 0.1049917 
## Run 208 stress 0.1049921 
## Run 209 stress 0.1070352 
## Run 210 stress 0.09653402 
## Run 211 stress 0.0903844 
## Run 212 stress 0.09089981 
## Run 213 stress 0.1062431 
## Run 214 stress 0.09599489 
## Run 215 stress 0.09088794 
## Run 216 stress 0.1068746 
## Run 217 stress 0.0905611 
## Run 218 stress 0.1066895 
## Run 219 stress 0.09056093 
## Run 220 stress 0.09090003 
## Run 221 stress 0.09042047 
## Run 222 stress 0.1074491 
## Run 223 stress 0.09090013 
## Run 224 stress 0.09015806 
## ... Procrustes: rmse 0.01476321  max resid 0.04493289 
## Run 225 stress 0.1049304 
## Run 226 stress 0.1074489 
## Run 227 stress 0.09042046 
## Run 228 stress 0.09042046 
## Run 229 stress 0.1060166 
## Run 230 stress 0.1060173 
## Run 231 stress 0.09049524 
## Run 232 stress 0.09056101 
## Run 233 stress 0.09056101 
## Run 234 stress 0.09049506 
## Run 235 stress 0.0897636 
## ... Procrustes: rmse 7.475144e-05  max resid 0.0001329916 
## ... Similar to previous best
## Run 236 stress 0.09189855 
## Run 237 stress 0.09066144 
## Run 238 stress 0.09049524 
## Run 239 stress 0.09056099 
## Run 240 stress 0.09248341 
## Run 241 stress 0.1060311 
## Run 242 stress 0.1060309 
## Run 243 stress 0.09194913 
## Run 244 stress 0.1049302 
## Run 245 stress 0.09172717 
## Run 246 stress 0.09109515 
## Run 247 stress 0.1043691 
## Run 248 stress 0.09599484 
## Run 249 stress 0.09194931 
## Run 250 stress 0.1068172 
## Run 251 stress 0.09145365 
## Run 252 stress 0.09145371 
## Run 253 stress 0.095995 
## Run 254 stress 0.09042045 
## Run 255 stress 0.09172721 
## Run 256 stress 0.09145371 
## Run 257 stress 0.10775 
## Run 258 stress 0.09059971 
## Run 259 stress 0.09056108 
## Run 260 stress 0.09030395 
## Run 261 stress 0.1092534 
## Run 262 stress 0.09545615 
## Run 263 stress 0.09599504 
## Run 264 stress 0.08985312 
## ... Procrustes: rmse 0.00805622  max resid 0.02710463 
## Run 265 stress 0.1074189 
## Run 266 stress 0.09545613 
## Run 267 stress 0.1070396 
## Run 268 stress 0.1049918 
## Run 269 stress 0.09049503 
## Run 270 stress 0.09545611 
## Run 271 stress 0.1066897 
## Run 272 stress 0.1083587 
## Run 273 stress 0.09089998 
## Run 274 stress 0.1043691 
## Run 275 stress 0.09073151 
## Run 276 stress 0.09015816 
## ... Procrustes: rmse 0.01482149  max resid 0.0451629 
## Run 277 stress 0.0898531 
## ... Procrustes: rmse 0.00806382  max resid 0.02721912 
## Run 278 stress 0.1070416 
## Run 279 stress 0.09074067 
## Run 280 stress 0.1055382 
## Run 281 stress 0.09022718 
## ... Procrustes: rmse 0.01099377  max resid 0.04093418 
## Run 282 stress 0.09062135 
## Run 283 stress 0.0918985 
## Run 284 stress 0.09070634 
## Run 285 stress 0.1092556 
## Run 286 stress 0.1059779 
## Run 287 stress 0.09653392 
## Run 288 stress 0.09545588 
## Run 289 stress 0.0914537 
## Run 290 stress 0.09090429 
## Run 291 stress 0.1055024 
## Run 292 stress 0.1059889 
## Run 293 stress 0.1070418 
## Run 294 stress 0.09073451 
## Run 295 stress 0.09042052 
## Run 296 stress 0.106582 
## Run 297 stress 0.09042059 
## Run 298 stress 0.109254 
## Run 299 stress 0.0905998 
## Run 300 stress 0.1109317 
## Run 301 stress 0.108359 
## Run 302 stress 0.09248344 
## Run 303 stress 0.1083694 
## Run 304 stress 0.09186389 
## Run 305 stress 0.09145377 
## Run 306 stress 0.08976357 
## ... Procrustes: rmse 3.941619e-05  max resid 8.18115e-05 
## ... Similar to previous best
## Run 307 stress 0.09172717 
## Run 308 stress 0.0973577 
## Run 309 stress 0.1066895 
## Run 310 stress 0.09602705 
## Run 311 stress 0.09145364 
## Run 312 stress 0.1074568 
## Run 313 stress 0.1076304 
## Run 314 stress 0.1070394 
## Run 315 stress 0.09317808 
## Run 316 stress 0.09042049 
## Run 317 stress 0.0908879 
## Run 318 stress 0.1076419 
## Run 319 stress 0.105125 
## Run 320 stress 0.0905997 
## Run 321 stress 0.09042052 
## Run 322 stress 0.08976357 
## ... Procrustes: rmse 2.997311e-05  max resid 5.573333e-05 
## ... Similar to previous best
## Run 323 stress 0.09172721 
## Run 324 stress 0.08976356 
## ... Procrustes: rmse 8.230835e-06  max resid 2.248459e-05 
## ... Similar to previous best
## Run 325 stress 0.0902275 
## ... Procrustes: rmse 0.01106126  max resid 0.0410805 
## Run 326 stress 0.09074071 
## Run 327 stress 0.09015816 
## ... Procrustes: rmse 0.01482267  max resid 0.04516829 
## Run 328 stress 0.107062 
## Run 329 stress 0.09049502 
## Run 330 stress 0.0905997 
## Run 331 stress 0.0904951 
## Run 332 stress 0.09172736 
## Run 333 stress 0.09545634 
## Run 334 stress 0.09073145 
## Run 335 stress 0.0907315 
## Run 336 stress 0.1096494 
## Run 337 stress 0.09042048 
## Run 338 stress 0.09030403 
## Run 339 stress 0.09056108 
## Run 340 stress 0.1099842 
## Run 341 stress 0.1068176 
## Run 342 stress 0.09056096 
## Run 343 stress 0.09599516 
## Run 344 stress 0.09049499 
## Run 345 stress 0.09248354 
## Run 346 stress 0.09073441 
## Run 347 stress 0.09545591 
## Run 348 stress 0.1049919 
## Run 349 stress 0.1060182 
## Run 350 stress 0.09074065 
## Run 351 stress 0.09634423 
## Run 352 stress 0.09066145 
## Run 353 stress 0.106689 
## Run 354 stress 0.09145378 
## Run 355 stress 0.09189849 
## Run 356 stress 0.09172717 
## Run 357 stress 0.09056779 
## Run 358 stress 0.08976356 
## ... New best solution
## ... Procrustes: rmse 4.519641e-06  max resid 1.084228e-05 
## ... Similar to previous best
## Run 359 stress 0.09030384 
## Run 360 stress 0.09090425 
## Run 361 stress 0.09545626 
## Run 362 stress 0.1070394 
## Run 363 stress 0.09022712 
## ... Procrustes: rmse 0.01096886  max resid 0.04086289 
## Run 364 stress 0.09194912 
## Run 365 stress 0.1099317 
## Run 366 stress 0.0904206 
## Run 367 stress 0.09186395 
## Run 368 stress 0.09015809 
## ... Procrustes: rmse 0.01475644  max resid 0.04490092 
## Run 369 stress 0.09073147 
## Run 370 stress 0.09042056 
## Run 371 stress 0.1065492 
## Run 372 stress 0.09090427 
## Run 373 stress 0.1102737 
## Run 374 stress 0.09042049 
## Run 375 stress 0.106875 
## Run 376 stress 0.09056097 
## Run 377 stress 0.108123 
## Run 378 stress 0.1060176 
## Run 379 stress 0.0898531 
## ... Procrustes: rmse 0.008061612  max resid 0.02722196 
## Run 380 stress 0.09049509 
## Run 381 stress 0.09172717 
## Run 382 stress 0.09317764 
## Run 383 stress 0.1055382 
## Run 384 stress 0.1077493 
## Run 385 stress 0.09022738 
## ... Procrustes: rmse 0.01101362  max resid 0.041048 
## Run 386 stress 0.09653368 
## Run 387 stress 0.1070393 
## Run 388 stress 0.1059771 
## Run 389 stress 0.09194921 
## Run 390 stress 0.09056095 
## Run 391 stress 0.09735773 
## Run 392 stress 0.09109516 
## Run 393 stress 0.08976356 
## ... Procrustes: rmse 1.411291e-05  max resid 3.729001e-05 
## ... Similar to previous best
## Run 394 stress 0.107062 
## Run 395 stress 0.09145363 
## Run 396 stress 0.09145365 
## Run 397 stress 0.09194921 
## Run 398 stress 0.1070393 
## Run 399 stress 0.09109515 
## Run 400 stress 0.09056103 
## Run 401 stress 0.09189847 
## Run 402 stress 0.09735763 
## Run 403 stress 0.09038429 
## Run 404 stress 0.09049499 
## Run 405 stress 0.09196773 
## Run 406 stress 0.09545647 
## Run 407 stress 0.09229306 
## Run 408 stress 0.09545583 
## Run 409 stress 0.0909043 
## Run 410 stress 0.09088784 
## Run 411 stress 0.09059967 
## Run 412 stress 0.09049508 
## Run 413 stress 0.1066895 
## Run 414 stress 0.1077496 
## Run 415 stress 0.1043691 
## Run 416 stress 0.090561 
## Run 417 stress 0.09118759 
## Run 418 stress 0.1055385 
## Run 419 stress 0.0914538 
## Run 420 stress 0.0903846 
## Run 421 stress 0.09056779 
## Run 422 stress 0.09056099 
## Run 423 stress 0.1043693 
## Run 424 stress 0.09545628 
## Run 425 stress 0.0904205 
## Run 426 stress 0.090561 
## Run 427 stress 0.09049519 
## Run 428 stress 0.09145366 
## Run 429 stress 0.10493 
## Run 430 stress 0.09042058 
## Run 431 stress 0.09653143 
## Run 432 stress 0.09634406 
## Run 433 stress 0.1049301 
## Run 434 stress 0.09056111 
## Run 435 stress 0.09056094 
## Run 436 stress 0.09073139 
## Run 437 stress 0.09599526 
## Run 438 stress 0.1096484 
## Run 439 stress 0.09056102 
## Run 440 stress 0.09056108 
## Run 441 stress 0.09145375 
## Run 442 stress 0.09049518 
## Run 443 stress 0.1066893 
## Run 444 stress 0.09088786 
## Run 445 stress 0.090495 
## Run 446 stress 0.1071633 
## Run 447 stress 0.09545586 
## Run 448 stress 0.09145377 
## Run 449 stress 0.09090438 
## Run 450 stress 0.08976356 
## ... Procrustes: rmse 6.035974e-06  max resid 1.068084e-05 
## ... Similar to previous best
## Run 451 stress 0.1055384 
## Run 452 stress 0.1073026 
## Run 453 stress 0.09042047 
## Run 454 stress 0.1099694 
## Run 455 stress 0.1096357 
## Run 456 stress 0.1068748 
## Run 457 stress 0.09109515 
## Run 458 stress 0.09056102 
## Run 459 stress 0.1060175 
## Run 460 stress 0.09038437 
## Run 461 stress 0.1083696 
## Run 462 stress 0.09653149 
## Run 463 stress 0.09189854 
## Run 464 stress 0.106031 
## Run 465 stress 0.1055384 
## Run 466 stress 0.09056105 
## Run 467 stress 0.09145364 
## Run 468 stress 0.1049918 
## Run 469 stress 0.09056102 
## Run 470 stress 0.1064196 
## Run 471 stress 0.09042049 
## Run 472 stress 0.09042045 
## Run 473 stress 0.09049504 
## Run 474 stress 0.0907407 
## Run 475 stress 0.1070394 
## Run 476 stress 0.09030385 
## Run 477 stress 0.106689 
## Run 478 stress 0.09056097 
## Run 479 stress 0.09015808 
## ... Procrustes: rmse 0.01479633  max resid 0.0450676 
## Run 480 stress 0.1071633 
## Run 481 stress 0.095995 
## Run 482 stress 0.1049294 
## Run 483 stress 0.1064207 
## Run 484 stress 0.1055383 
## Run 485 stress 0.107404 
## Run 486 stress 0.1074569 
## Run 487 stress 0.09022745 
## ... Procrustes: rmse 0.01105367  max resid 0.04103884 
## Run 488 stress 0.09022712 
## ... Procrustes: rmse 0.01097578  max resid 0.04088746 
## Run 489 stress 0.1081637 
## Run 490 stress 0.090561 
## Run 491 stress 0.1059894 
## Run 492 stress 0.09056096 
## Run 493 stress 0.09056101 
## Run 494 stress 0.09038465 
## Run 495 stress 0.09056098 
## Run 496 stress 0.1096356 
## Run 497 stress 0.08976356 
## ... Procrustes: rmse 5.143909e-06  max resid 9.484078e-06 
## ... Similar to previous best
## Run 498 stress 0.09038464 
## Run 499 stress 0.09022716 
## ... Procrustes: rmse 0.01097881  max resid 0.04089978 
## Run 500 stress 0.1083694 
## *** Best solution repeated 4 times
round(jpres_NMDS$stress, digits = 2)
## [1] 0.09
# Mixed and stratified lakes
jpresms_NMDS <- metaMDS(jpresms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08503614 
## Run 1 stress 0.09374192 
## Run 2 stress 0.09168928 
## Run 3 stress 0.09145334 
## Run 4 stress 0.09337257 
## Run 5 stress 0.09030413 
## Run 6 stress 0.08440261 
## ... New best solution
## ... Procrustes: rmse 0.01443206  max resid 0.04303711 
## Run 7 stress 0.09374311 
## Run 8 stress 0.09030394 
## Run 9 stress 0.3312344 
## Run 10 stress 0.09030398 
## Run 11 stress 0.09145326 
## Run 12 stress 0.09321863 
## Run 13 stress 0.09407996 
## Run 14 stress 0.09030404 
## Run 15 stress 0.08773466 
## Run 16 stress 0.09407993 
## Run 17 stress 0.08973865 
## Run 18 stress 0.08440252 
## ... New best solution
## ... Procrustes: rmse 0.0001214151  max resid 0.0002204985 
## ... Similar to previous best
## Run 19 stress 0.08440255 
## ... Procrustes: rmse 0.000206132  max resid 0.0004030233 
## ... Similar to previous best
## Run 20 stress 0.09168939 
## Run 21 stress 0.08503511 
## Run 22 stress 0.08503512 
## Run 23 stress 0.09407419 
## Run 24 stress 0.09590591 
## Run 25 stress 0.09159091 
## Run 26 stress 0.09268367 
## Run 27 stress 0.09464495 
## Run 28 stress 0.1038048 
## Run 29 stress 0.09404378 
## Run 30 stress 0.09400516 
## Run 31 stress 0.09321716 
## Run 32 stress 0.09268386 
## Run 33 stress 0.08503619 
## Run 34 stress 0.09416131 
## Run 35 stress 0.09416146 
## Run 36 stress 0.09381845 
## Run 37 stress 0.0850351 
## Run 38 stress 0.08973869 
## Run 39 stress 0.09760824 
## Run 40 stress 0.09159086 
## Run 41 stress 0.0933727 
## Run 42 stress 0.09416131 
## Run 43 stress 0.09286083 
## Run 44 stress 0.09760832 
## Run 45 stress 0.09030397 
## Run 46 stress 0.09416141 
## Run 47 stress 0.09590871 
## Run 48 stress 0.09374363 
## Run 49 stress 0.08440253 
## ... Procrustes: rmse 3.326971e-05  max resid 6.281123e-05 
## ... Similar to previous best
## Run 50 stress 0.0933731 
## Run 51 stress 0.08503478 
## Run 52 stress 0.09374302 
## Run 53 stress 0.08503456 
## Run 54 stress 0.09268351 
## Run 55 stress 0.09969976 
## Run 56 stress 0.1038048 
## Run 57 stress 0.09159085 
## Run 58 stress 0.09337263 
## Run 59 stress 0.09407425 
## Run 60 stress 0.09374266 
## Run 61 stress 0.09337241 
## Run 62 stress 0.0941614 
## Run 63 stress 0.09407979 
## Run 64 stress 0.08440264 
## ... Procrustes: rmse 0.0001365347  max resid 0.000249978 
## ... Similar to previous best
## Run 65 stress 0.09168933 
## Run 66 stress 0.08440253 
## ... Procrustes: rmse 1.772816e-05  max resid 3.16791e-05 
## ... Similar to previous best
## Run 67 stress 0.08440273 
## ... Procrustes: rmse 0.0003539093  max resid 0.0006867037 
## ... Similar to previous best
## Run 68 stress 0.2511968 
## Run 69 stress 0.0926842 
## Run 70 stress 0.08503494 
## Run 71 stress 0.2954029 
## Run 72 stress 0.09969974 
## Run 73 stress 0.330972 
## Run 74 stress 0.09465916 
## Run 75 stress 0.0926836 
## Run 76 stress 0.09760827 
## Run 77 stress 0.09268358 
## Run 78 stress 0.105285 
## Run 79 stress 0.09539193 
## Run 80 stress 0.09030393 
## Run 81 stress 0.09408011 
## Run 82 stress 0.09030393 
## Run 83 stress 0.09030393 
## Run 84 stress 0.09030399 
## Run 85 stress 0.0897387 
## Run 86 stress 0.09337265 
## Run 87 stress 0.08440273 
## ... Procrustes: rmse 0.0003436818  max resid 0.0006664536 
## ... Similar to previous best
## Run 88 stress 0.09030403 
## Run 89 stress 0.09145322 
## Run 90 stress 0.09268322 
## Run 91 stress 0.08773482 
## Run 92 stress 0.09969978 
## Run 93 stress 0.0940797 
## Run 94 stress 0.09381844 
## Run 95 stress 0.09337235 
## Run 96 stress 0.1026215 
## Run 97 stress 0.09416144 
## Run 98 stress 0.09669828 
## Run 99 stress 0.0940711 
## Run 100 stress 0.09337257 
## Run 101 stress 0.09337291 
## Run 102 stress 0.09760838 
## Run 103 stress 0.09030406 
## Run 104 stress 0.09403437 
## Run 105 stress 0.08503514 
## Run 106 stress 0.09408004 
## Run 107 stress 0.09268375 
## Run 108 stress 0.09030396 
## Run 109 stress 0.09407965 
## Run 110 stress 0.09286086 
## Run 111 stress 0.09145331 
## Run 112 stress 0.08440256 
## ... Procrustes: rmse 0.0002105501  max resid 0.0004099146 
## ... Similar to previous best
## Run 113 stress 0.09286086 
## Run 114 stress 0.0916893 
## Run 115 stress 0.09030404 
## Run 116 stress 0.09535476 
## Run 117 stress 0.09159093 
## Run 118 stress 0.09535543 
## Run 119 stress 0.09408011 
## Run 120 stress 0.08503518 
## Run 121 stress 0.09268318 
## Run 122 stress 0.09969989 
## Run 123 stress 0.09168927 
## Run 124 stress 0.1038046 
## Run 125 stress 0.09168951 
## Run 126 stress 0.09030398 
## Run 127 stress 0.0933727 
## Run 128 stress 0.09760832 
## Run 129 stress 0.09286093 
## Run 130 stress 0.08773469 
## Run 131 stress 0.09407994 
## Run 132 stress 0.09308986 
## Run 133 stress 0.09030402 
## Run 134 stress 0.08440272 
## ... Procrustes: rmse 0.0001976764  max resid 0.0003547828 
## ... Similar to previous best
## Run 135 stress 0.08503458 
## Run 136 stress 0.09030398 
## Run 137 stress 0.08973872 
## Run 138 stress 0.08440259 
## ... Procrustes: rmse 9.838802e-05  max resid 0.0001902928 
## ... Similar to previous best
## Run 139 stress 0.09407995 
## Run 140 stress 0.09407105 
## Run 141 stress 0.09416136 
## Run 142 stress 0.09145328 
## Run 143 stress 0.09712954 
## Run 144 stress 0.08503479 
## Run 145 stress 0.09030414 
## Run 146 stress 0.09159094 
## Run 147 stress 0.087735 
## Run 148 stress 0.09030403 
## Run 149 stress 0.1072863 
## Run 150 stress 0.08773467 
## Run 151 stress 0.1054543 
## Run 152 stress 0.09286084 
## Run 153 stress 0.09286094 
## Run 154 stress 0.09337281 
## Run 155 stress 0.09268358 
## Run 156 stress 0.08973889 
## Run 157 stress 0.08973883 
## Run 158 stress 0.09407967 
## Run 159 stress 0.1053423 
## Run 160 stress 0.09159087 
## Run 161 stress 0.3127475 
## Run 162 stress 0.08973874 
## Run 163 stress 0.09407966 
## Run 164 stress 0.09337303 
## Run 165 stress 0.09337269 
## Run 166 stress 0.08773487 
## Run 167 stress 0.09590847 
## Run 168 stress 0.1038038 
## Run 169 stress 0.08503456 
## Run 170 stress 0.09408001 
## Run 171 stress 0.09970002 
## Run 172 stress 0.1038047 
## Run 173 stress 0.08973865 
## Run 174 stress 0.09030411 
## Run 175 stress 0.08973886 
## Run 176 stress 0.09145323 
## Run 177 stress 0.08773472 
## Run 178 stress 0.0844027 
## ... Procrustes: rmse 0.0001893557  max resid 0.0003816202 
## ... Similar to previous best
## Run 179 stress 0.09268323 
## Run 180 stress 0.09145324 
## Run 181 stress 0.0940797 
## Run 182 stress 0.09268322 
## Run 183 stress 0.08440257 
## ... Procrustes: rmse 8.301856e-05  max resid 0.0001687432 
## ... Similar to previous best
## Run 184 stress 0.09159091 
## Run 185 stress 0.08440251 
## ... New best solution
## ... Procrustes: rmse 8.613108e-05  max resid 0.0001615315 
## ... Similar to previous best
## Run 186 stress 0.09030414 
## Run 187 stress 0.09030395 
## Run 188 stress 0.09159085 
## Run 189 stress 0.1038039 
## Run 190 stress 0.09407978 
## Run 191 stress 0.08503455 
## Run 192 stress 0.09407993 
## Run 193 stress 0.08440258 
## ... Procrustes: rmse 0.0001714919  max resid 0.0003218325 
## ... Similar to previous best
## Run 194 stress 0.08440251 
## ... New best solution
## ... Procrustes: rmse 1.674406e-05  max resid 3.315666e-05 
## ... Similar to previous best
## Run 195 stress 0.09408008 
## Run 196 stress 0.09286083 
## Run 197 stress 0.0844026 
## ... Procrustes: rmse 0.0001692951  max resid 0.0003431881 
## ... Similar to previous best
## Run 198 stress 0.09337243 
## Run 199 stress 0.08973875 
## Run 200 stress 0.09030396 
## Run 201 stress 0.09416142 
## Run 202 stress 0.08503629 
## Run 203 stress 0.09268418 
## Run 204 stress 0.08440251 
## ... Procrustes: rmse 4.146284e-05  max resid 8.312039e-05 
## ... Similar to previous best
## Run 205 stress 0.09445467 
## Run 206 stress 0.09969971 
## Run 207 stress 0.08773476 
## Run 208 stress 0.0926838 
## Run 209 stress 0.08440255 
## ... Procrustes: rmse 0.0001197575  max resid 0.0002454322 
## ... Similar to previous best
## Run 210 stress 0.09145326 
## Run 211 stress 0.09159086 
## Run 212 stress 0.08773485 
## Run 213 stress 0.08440276 
## ... Procrustes: rmse 0.0002930588  max resid 0.0005322055 
## ... Similar to previous best
## Run 214 stress 0.09417801 
## Run 215 stress 0.08973864 
## Run 216 stress 0.09268403 
## Run 217 stress 0.09539195 
## Run 218 stress 0.08503472 
## Run 219 stress 0.09168931 
## Run 220 stress 0.0940801 
## Run 221 stress 0.09268334 
## Run 222 stress 0.08440265 
## ... Procrustes: rmse 0.0002101057  max resid 0.0004495634 
## ... Similar to previous best
## Run 223 stress 0.09286084 
## Run 224 stress 0.09374194 
## Run 225 stress 0.09159093 
## Run 226 stress 0.09145327 
## Run 227 stress 0.09416137 
## Run 228 stress 0.3134234 
## Run 229 stress 0.09145322 
## Run 230 stress 0.09535474 
## Run 231 stress 0.09464479 
## Run 232 stress 0.09760815 
## Run 233 stress 0.0897387 
## Run 234 stress 0.09380579 
## Run 235 stress 0.09286088 
## Run 236 stress 0.09416138 
## Run 237 stress 0.09159083 
## Run 238 stress 0.0850366 
## Run 239 stress 0.1038048 
## Run 240 stress 0.09030413 
## Run 241 stress 0.08973863 
## Run 242 stress 0.1038051 
## Run 243 stress 0.0933728 
## Run 244 stress 0.09407973 
## Run 245 stress 0.09760848 
## Run 246 stress 0.08773471 
## Run 247 stress 0.09408012 
## Run 248 stress 0.09286083 
## Run 249 stress 0.08440254 
## ... Procrustes: rmse 0.0001213456  max resid 0.0002359459 
## ... Similar to previous best
## Run 250 stress 0.08440255 
## ... Procrustes: rmse 0.0001115774  max resid 0.0002417033 
## ... Similar to previous best
## Run 251 stress 0.09337285 
## Run 252 stress 0.08503622 
## Run 253 stress 0.09535416 
## Run 254 stress 0.2663889 
## Run 255 stress 0.09407975 
## Run 256 stress 0.09337305 
## Run 257 stress 0.08503496 
## Run 258 stress 0.09145321 
## Run 259 stress 0.09286095 
## Run 260 stress 0.1054535 
## Run 261 stress 0.09030399 
## Run 262 stress 0.09308976 
## Run 263 stress 0.09408006 
## Run 264 stress 0.09539193 
## Run 265 stress 0.09416132 
## Run 266 stress 0.09445416 
## Run 267 stress 0.09417786 
## Run 268 stress 0.08440269 
## ... Procrustes: rmse 0.0002458255  max resid 0.0004509482 
## ... Similar to previous best
## Run 269 stress 0.09407968 
## Run 270 stress 0.09168946 
## Run 271 stress 0.09145336 
## Run 272 stress 0.09465917 
## Run 273 stress 0.09286083 
## Run 274 stress 0.08440252 
## ... Procrustes: rmse 3.077977e-05  max resid 5.303327e-05 
## ... Similar to previous best
## Run 275 stress 0.08973877 
## Run 276 stress 0.09407973 
## Run 277 stress 0.09168944 
## Run 278 stress 0.09030394 
## Run 279 stress 0.09030407 
## Run 280 stress 0.093743 
## Run 281 stress 0.09969978 
## Run 282 stress 0.09268345 
## Run 283 stress 0.09465904 
## Run 284 stress 0.09760826 
## Run 285 stress 0.09407992 
## Run 286 stress 0.09712976 
## Run 287 stress 0.09145341 
## Run 288 stress 0.08503459 
## Run 289 stress 0.1052849 
## Run 290 stress 0.09159084 
## Run 291 stress 0.08440265 
## ... Procrustes: rmse 0.0002209764  max resid 0.0004122987 
## ... Similar to previous best
## Run 292 stress 0.1038041 
## Run 293 stress 0.08440251 
## ... Procrustes: rmse 3.9695e-05  max resid 9.232903e-05 
## ... Similar to previous best
## Run 294 stress 0.0940799 
## Run 295 stress 0.08440254 
## ... Procrustes: rmse 0.0001090816  max resid 0.0002232305 
## ... Similar to previous best
## Run 296 stress 0.09168934 
## Run 297 stress 0.246648 
## Run 298 stress 0.09286091 
## Run 299 stress 0.0971294 
## Run 300 stress 0.08440254 
## ... Procrustes: rmse 9.95431e-05  max resid 0.0001960732 
## ... Similar to previous best
## Run 301 stress 0.09465904 
## Run 302 stress 0.09145323 
## Run 303 stress 0.09407967 
## Run 304 stress 0.09407979 
## Run 305 stress 0.0933731 
## Run 306 stress 0.09268318 
## Run 307 stress 0.08503572 
## Run 308 stress 0.09408005 
## Run 309 stress 0.09374279 
## Run 310 stress 0.09417808 
## Run 311 stress 0.09268374 
## Run 312 stress 0.08503644 
## Run 313 stress 0.09445479 
## Run 314 stress 0.09337265 
## Run 315 stress 0.08973866 
## Run 316 stress 0.09374196 
## Run 317 stress 0.09159089 
## Run 318 stress 0.09268401 
## Run 319 stress 0.09407972 
## Run 320 stress 0.0959091 
## Run 321 stress 0.09159089 
## Run 322 stress 0.08440252 
## ... Procrustes: rmse 3.7855e-05  max resid 7.384154e-05 
## ... Similar to previous best
## Run 323 stress 0.09407968 
## Run 324 stress 0.09286083 
## Run 325 stress 0.08503476 
## Run 326 stress 0.08973863 
## Run 327 stress 0.09669844 
## Run 328 stress 0.2688899 
## Run 329 stress 0.0933728 
## Run 330 stress 0.09145329 
## Run 331 stress 0.09465909 
## Run 332 stress 0.09760837 
## Run 333 stress 0.0926833 
## Run 334 stress 0.09268386 
## Run 335 stress 0.08503585 
## Run 336 stress 0.09407991 
## Run 337 stress 0.09969967 
## Run 338 stress 0.1052848 
## Run 339 stress 0.09416147 
## Run 340 stress 0.1026215 
## Run 341 stress 0.08773472 
## Run 342 stress 0.08440251 
## ... Procrustes: rmse 2.676859e-05  max resid 4.617254e-05 
## ... Similar to previous best
## Run 343 stress 0.09030397 
## Run 344 stress 0.09337279 
## Run 345 stress 0.08503552 
## Run 346 stress 0.09145335 
## Run 347 stress 0.08773486 
## Run 348 stress 0.10196 
## Run 349 stress 0.0844026 
## ... Procrustes: rmse 0.0001644971  max resid 0.0003147319 
## ... Similar to previous best
## Run 350 stress 0.1038084 
## Run 351 stress 0.09969968 
## Run 352 stress 0.09159087 
## Run 353 stress 0.09030403 
## Run 354 stress 0.08440267 
## ... Procrustes: rmse 0.000226478  max resid 0.000453034 
## ... Similar to previous best
## Run 355 stress 0.09337265 
## Run 356 stress 0.09408004 
## Run 357 stress 0.08440255 
## ... Procrustes: rmse 0.0001168911  max resid 0.0002270477 
## ... Similar to previous best
## Run 358 stress 0.09374244 
## Run 359 stress 0.08773474 
## Run 360 stress 0.097212 
## Run 361 stress 0.0897388 
## Run 362 stress 0.08440269 
## ... Procrustes: rmse 0.0002488569  max resid 0.0004592215 
## ... Similar to previous best
## Run 363 stress 0.090304 
## Run 364 stress 0.0897388 
## Run 365 stress 0.09381846 
## Run 366 stress 0.09030411 
## Run 367 stress 0.09535518 
## Run 368 stress 0.09380579 
## Run 369 stress 0.0940799 
## Run 370 stress 0.09159085 
## Run 371 stress 0.09337277 
## Run 372 stress 0.0850366 
## Run 373 stress 0.09159086 
## Run 374 stress 0.09407992 
## Run 375 stress 0.09308955 
## Run 376 stress 0.09268371 
## Run 377 stress 0.09539192 
## Run 378 stress 0.09407992 
## Run 379 stress 0.09337239 
## Run 380 stress 0.09465905 
## Run 381 stress 0.09445509 
## Run 382 stress 0.09721201 
## Run 383 stress 0.093743 
## Run 384 stress 0.09407986 
## Run 385 stress 0.09465905 
## Run 386 stress 0.09381855 
## Run 387 stress 0.09159092 
## Run 388 stress 0.09465904 
## Run 389 stress 0.09416146 
## Run 390 stress 0.08503616 
## Run 391 stress 0.1038047 
## Run 392 stress 0.09286083 
## Run 393 stress 0.09030402 
## Run 394 stress 0.0915909 
## Run 395 stress 0.09030394 
## Run 396 stress 0.0897387 
## Run 397 stress 0.09030399 
## Run 398 stress 0.09159094 
## Run 399 stress 0.08773474 
## Run 400 stress 0.1038092 
## Run 401 stress 0.09030401 
## Run 402 stress 0.08773482 
## Run 403 stress 0.322409 
## Run 404 stress 0.100461 
## Run 405 stress 0.09030407 
## Run 406 stress 0.08773475 
## Run 407 stress 0.2659608 
## Run 408 stress 0.09145321 
## Run 409 stress 0.09286084 
## Run 410 stress 0.0940055 
## Run 411 stress 0.09760813 
## Run 412 stress 0.09374294 
## Run 413 stress 0.0897387 
## Run 414 stress 0.09268349 
## Run 415 stress 0.09268336 
## Run 416 stress 0.09407499 
## Run 417 stress 0.1084723 
## Run 418 stress 0.08773466 
## Run 419 stress 0.09308982 
## Run 420 stress 0.09286094 
## Run 421 stress 0.090304 
## Run 422 stress 0.08973868 
## Run 423 stress 0.0953548 
## Run 424 stress 0.09535507 
## Run 425 stress 0.09669878 
## Run 426 stress 0.0850349 
## Run 427 stress 0.08973865 
## Run 428 stress 0.09590684 
## Run 429 stress 0.09408018 
## Run 430 stress 0.09407117 
## Run 431 stress 0.08440252 
## ... Procrustes: rmse 5.378787e-05  max resid 0.0001091697 
## ... Similar to previous best
## Run 432 stress 0.09590941 
## Run 433 stress 0.09030393 
## Run 434 stress 0.08503616 
## Run 435 stress 0.09407987 
## Run 436 stress 0.09321734 
## Run 437 stress 0.09286095 
## Run 438 stress 0.09407978 
## Run 439 stress 0.09145327 
## Run 440 stress 0.08773494 
## Run 441 stress 0.08503456 
## Run 442 stress 0.09416143 
## Run 443 stress 0.09337235 
## Run 444 stress 0.09969964 
## Run 445 stress 0.09380575 
## Run 446 stress 0.09030407 
## Run 447 stress 0.09030393 
## Run 448 stress 0.1095796 
## Run 449 stress 0.0850347 
## Run 450 stress 0.08440252 
## ... Procrustes: rmse 7.746526e-05  max resid 0.0001425796 
## ... Similar to previous best
## Run 451 stress 0.09308955 
## Run 452 stress 0.09465907 
## Run 453 stress 0.08773482 
## Run 454 stress 0.08503499 
## Run 455 stress 0.09400518 
## Run 456 stress 0.09337288 
## Run 457 stress 0.0850361 
## Run 458 stress 0.09145323 
## Run 459 stress 0.0844027 
## ... Procrustes: rmse 0.0002543567  max resid 0.0004660647 
## ... Similar to previous best
## Run 460 stress 0.09145322 
## Run 461 stress 0.2456114 
## Run 462 stress 0.09380579 
## Run 463 stress 0.09308946 
## Run 464 stress 0.09159087 
## Run 465 stress 0.103805 
## Run 466 stress 0.0914533 
## Run 467 stress 0.09407987 
## Run 468 stress 0.09268399 
## Run 469 stress 0.09168954 
## Run 470 stress 0.09159084 
## Run 471 stress 0.09407992 
## Run 472 stress 0.09268353 
## Run 473 stress 0.09407969 
## Run 474 stress 0.0850349 
## Run 475 stress 0.09030393 
## Run 476 stress 0.1004611 
## Run 477 stress 0.2931636 
## Run 478 stress 0.09168944 
## Run 479 stress 0.09400516 
## Run 480 stress 0.09464428 
## Run 481 stress 0.09407137 
## Run 482 stress 0.08973872 
## Run 483 stress 0.09969985 
## Run 484 stress 0.08773496 
## Run 485 stress 0.09407125 
## Run 486 stress 0.09337249 
## Run 487 stress 0.09539195 
## Run 488 stress 0.08503559 
## Run 489 stress 0.2511907 
## Run 490 stress 0.09168931 
## Run 491 stress 0.08503531 
## Run 492 stress 0.0903041 
## Run 493 stress 0.0926835 
## Run 494 stress 0.08503678 
## Run 495 stress 0.09159091 
## Run 496 stress 0.09407982 
## Run 497 stress 0.08503467 
## Run 498 stress 0.09416131 
## Run 499 stress 0.09308954 
## Run 500 stress 0.08440253 
## ... Procrustes: rmse 2.028073e-05  max resid 4.29064e-05 
## ... Similar to previous best
## *** Best solution repeated 24 times
# Ocean sites and mixed lakes
jpresom_NMDS <- metaMDS(jpresom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.07160265 
## Run 1 stress 0.07160266 
## ... Procrustes: rmse 6.106531e-05  max resid 0.0001456611 
## ... Similar to previous best
## Run 2 stress 0.07176075 
## ... Procrustes: rmse 0.01168667  max resid 0.03165021 
## Run 3 stress 0.07393039 
## Run 4 stress 0.07160268 
## ... Procrustes: rmse 9.646176e-05  max resid 0.0002269556 
## ... Similar to previous best
## Run 5 stress 0.07176075 
## ... Procrustes: rmse 0.0116946  max resid 0.03161606 
## Run 6 stress 0.07160266 
## ... Procrustes: rmse 5.9476e-05  max resid 0.0001408304 
## ... Similar to previous best
## Run 7 stress 0.07160265 
## ... Procrustes: rmse 3.742235e-06  max resid 8.795747e-06 
## ... Similar to previous best
## Run 8 stress 0.07176074 
## ... Procrustes: rmse 0.0116912  max resid 0.03162807 
## Run 9 stress 0.07393042 
## Run 10 stress 0.07160265 
## ... Procrustes: rmse 2.815349e-05  max resid 6.667229e-05 
## ... Similar to previous best
## Run 11 stress 0.0830172 
## Run 12 stress 0.07160269 
## ... Procrustes: rmse 0.0001010798  max resid 0.0002411241 
## ... Similar to previous best
## Run 13 stress 0.08301708 
## Run 14 stress 0.07393039 
## Run 15 stress 0.07160267 
## ... Procrustes: rmse 6.330844e-05  max resid 0.0001446288 
## ... Similar to previous best
## Run 16 stress 0.08301718 
## Run 17 stress 0.07160266 
## ... Procrustes: rmse 5.477695e-05  max resid 0.0001277434 
## ... Similar to previous best
## Run 18 stress 0.07160265 
## ... Procrustes: rmse 2.703479e-05  max resid 6.123983e-05 
## ... Similar to previous best
## Run 19 stress 0.0717608 
## ... Procrustes: rmse 0.01167878  max resid 0.03169036 
## Run 20 stress 0.07160272 
## ... Procrustes: rmse 0.0001371422  max resid 0.0003221557 
## ... Similar to previous best
## Run 21 stress 0.07393041 
## Run 22 stress 0.07393039 
## Run 23 stress 0.07160265 
## ... Procrustes: rmse 1.478691e-05  max resid 3.460058e-05 
## ... Similar to previous best
## Run 24 stress 0.07176075 
## ... Procrustes: rmse 0.01168615  max resid 0.03165303 
## Run 25 stress 0.07393039 
## Run 26 stress 0.07160266 
## ... Procrustes: rmse 2.021473e-05  max resid 2.920199e-05 
## ... Similar to previous best
## Run 27 stress 0.07160267 
## ... Procrustes: rmse 5.175875e-05  max resid 0.0001252959 
## ... Similar to previous best
## Run 28 stress 0.07160265 
## ... Procrustes: rmse 4.634309e-05  max resid 0.0001096226 
## ... Similar to previous best
## Run 29 stress 0.07176081 
## ... Procrustes: rmse 0.01170196  max resid 0.03157963 
## Run 30 stress 0.07160275 
## ... Procrustes: rmse 0.0001742492  max resid 0.0004147339 
## ... Similar to previous best
## Run 31 stress 0.07160267 
## ... Procrustes: rmse 5.979338e-05  max resid 0.0001329137 
## ... Similar to previous best
## Run 32 stress 0.07160269 
## ... Procrustes: rmse 0.0001148347  max resid 0.0002696276 
## ... Similar to previous best
## Run 33 stress 0.07160271 
## ... Procrustes: rmse 0.0001268039  max resid 0.0002926391 
## ... Similar to previous best
## Run 34 stress 0.07160267 
## ... Procrustes: rmse 8.385477e-05  max resid 0.000192612 
## ... Similar to previous best
## Run 35 stress 0.07393039 
## Run 36 stress 0.0739304 
## Run 37 stress 0.07160275 
## ... Procrustes: rmse 0.0001773252  max resid 0.0004212743 
## ... Similar to previous best
## Run 38 stress 0.07176083 
## ... Procrustes: rmse 0.01167814  max resid 0.03169246 
## Run 39 stress 0.0739304 
## Run 40 stress 0.07393038 
## Run 41 stress 0.07160266 
## ... Procrustes: rmse 5.303867e-05  max resid 0.0001250303 
## ... Similar to previous best
## Run 42 stress 0.07160265 
## ... Procrustes: rmse 1.812574e-05  max resid 4.245425e-05 
## ... Similar to previous best
## Run 43 stress 0.07393038 
## Run 44 stress 0.07393039 
## Run 45 stress 0.07160265 
## ... Procrustes: rmse 2.351955e-05  max resid 5.504966e-05 
## ... Similar to previous best
## Run 46 stress 0.07160265 
## ... Procrustes: rmse 3.771566e-05  max resid 8.586507e-05 
## ... Similar to previous best
## Run 47 stress 0.08301705 
## Run 48 stress 0.07160265 
## ... Procrustes: rmse 2.747905e-05  max resid 6.35188e-05 
## ... Similar to previous best
## Run 49 stress 0.07160268 
## ... Procrustes: rmse 9.999403e-05  max resid 0.0002344555 
## ... Similar to previous best
## Run 50 stress 0.07160275 
## ... Procrustes: rmse 0.000155951  max resid 0.0003621614 
## ... Similar to previous best
## Run 51 stress 0.07160272 
## ... Procrustes: rmse 0.0001494183  max resid 0.0003527279 
## ... Similar to previous best
## Run 52 stress 0.07160269 
## ... Procrustes: rmse 9.67157e-05  max resid 0.0002310317 
## ... Similar to previous best
## Run 53 stress 0.07160278 
## ... Procrustes: rmse 0.0001890865  max resid 0.0004480426 
## ... Similar to previous best
## Run 54 stress 0.07160265 
## ... Procrustes: rmse 3.298277e-05  max resid 7.754677e-05 
## ... Similar to previous best
## Run 55 stress 0.07160271 
## ... Procrustes: rmse 0.0001169774  max resid 0.0002676868 
## ... Similar to previous best
## Run 56 stress 0.07176076 
## ... Procrustes: rmse 0.01168314  max resid 0.03166732 
## Run 57 stress 0.07160268 
## ... Procrustes: rmse 2.965047e-05  max resid 6.19872e-05 
## ... Similar to previous best
## Run 58 stress 0.07160266 
## ... Procrustes: rmse 2.919964e-05  max resid 6.276234e-05 
## ... Similar to previous best
## Run 59 stress 0.07160266 
## ... Procrustes: rmse 6.034397e-05  max resid 0.0001442513 
## ... Similar to previous best
## Run 60 stress 0.07393039 
## Run 61 stress 0.07176076 
## ... Procrustes: rmse 0.01168388  max resid 0.03166461 
## Run 62 stress 0.08301706 
## Run 63 stress 0.07393039 
## Run 64 stress 0.07393039 
## Run 65 stress 0.07393039 
## Run 66 stress 0.07176076 
## ... Procrustes: rmse 0.01168365  max resid 0.03166565 
## Run 67 stress 0.07393039 
## Run 68 stress 0.07393039 
## Run 69 stress 0.07160272 
## ... Procrustes: rmse 0.0001479585  max resid 0.0003520213 
## ... Similar to previous best
## Run 70 stress 0.07160267 
## ... Procrustes: rmse 7.470295e-05  max resid 0.000175725 
## ... Similar to previous best
## Run 71 stress 0.07176075 
## ... Procrustes: rmse 0.01169534  max resid 0.03161196 
## Run 72 stress 0.07160271 
## ... Procrustes: rmse 0.000133492  max resid 0.0003192267 
## ... Similar to previous best
## Run 73 stress 0.07160274 
## ... Procrustes: rmse 0.0001658751  max resid 0.0003902609 
## ... Similar to previous best
## Run 74 stress 0.07176077 
## ... Procrustes: rmse 0.01169673  max resid 0.03160548 
## Run 75 stress 0.07176075 
## ... Procrustes: rmse 0.01169372  max resid 0.03161961 
## Run 76 stress 0.07160269 
## ... Procrustes: rmse 0.0001031232  max resid 0.0002425756 
## ... Similar to previous best
## Run 77 stress 0.07160273 
## ... Procrustes: rmse 0.0001619813  max resid 0.0003825301 
## ... Similar to previous best
## Run 78 stress 0.07160268 
## ... Procrustes: rmse 6.870544e-05  max resid 0.0001624089 
## ... Similar to previous best
## Run 79 stress 0.07393039 
## Run 80 stress 0.07160279 
## ... Procrustes: rmse 0.0001846093  max resid 0.0004287958 
## ... Similar to previous best
## Run 81 stress 0.07393039 
## Run 82 stress 0.07393042 
## Run 83 stress 0.07393039 
## Run 84 stress 0.07176078 
## ... Procrustes: rmse 0.01169916  max resid 0.03159533 
## Run 85 stress 0.08301717 
## Run 86 stress 0.07393038 
## Run 87 stress 0.07176077 
## ... Procrustes: rmse 0.01168222  max resid 0.03167233 
## Run 88 stress 0.2590752 
## Run 89 stress 0.07160265 
## ... Procrustes: rmse 2.094226e-05  max resid 4.373006e-05 
## ... Similar to previous best
## Run 90 stress 0.08301708 
## Run 91 stress 0.07393041 
## Run 92 stress 0.07176075 
## ... Procrustes: rmse 0.01169021  max resid 0.0316401 
## Run 93 stress 0.07176076 
## ... Procrustes: rmse 0.01168455  max resid 0.03166245 
## Run 94 stress 0.07160274 
## ... Procrustes: rmse 0.0001579666  max resid 0.0003743676 
## ... Similar to previous best
## Run 95 stress 0.07160271 
## ... Procrustes: rmse 0.0001330433  max resid 0.0003165675 
## ... Similar to previous best
## Run 96 stress 0.07160266 
## ... Procrustes: rmse 7.104852e-05  max resid 0.0001672836 
## ... Similar to previous best
## Run 97 stress 0.07160266 
## ... Procrustes: rmse 6.844547e-05  max resid 0.0001617512 
## ... Similar to previous best
## Run 98 stress 0.07176076 
## ... Procrustes: rmse 0.01169551  max resid 0.03161138 
## Run 99 stress 0.0739304 
## Run 100 stress 0.08301706 
## Run 101 stress 0.07160265 
## ... Procrustes: rmse 3.482744e-05  max resid 8.210654e-05 
## ... Similar to previous best
## Run 102 stress 0.07393039 
## Run 103 stress 0.07160266 
## ... Procrustes: rmse 4.112389e-05  max resid 9.907669e-05 
## ... Similar to previous best
## Run 104 stress 0.07160266 
## ... Procrustes: rmse 6.384156e-05  max resid 0.0001482147 
## ... Similar to previous best
## Run 105 stress 0.07160267 
## ... Procrustes: rmse 8.427144e-05  max resid 0.0001973292 
## ... Similar to previous best
## Run 106 stress 0.07176075 
## ... Procrustes: rmse 0.01168768  max resid 0.03164511 
## Run 107 stress 0.07176077 
## ... Procrustes: rmse 0.01169763  max resid 0.03160171 
## Run 108 stress 0.07160269 
## ... Procrustes: rmse 7.989335e-05  max resid 0.0001865972 
## ... Similar to previous best
## Run 109 stress 0.07160266 
## ... Procrustes: rmse 6.736139e-05  max resid 0.0001602647 
## ... Similar to previous best
## Run 110 stress 0.07393041 
## Run 111 stress 0.07393039 
## Run 112 stress 0.07393039 
## Run 113 stress 0.07160265 
## ... Procrustes: rmse 3.353346e-05  max resid 8.135217e-05 
## ... Similar to previous best
## Run 114 stress 0.07393038 
## Run 115 stress 0.07176075 
## ... Procrustes: rmse 0.0116858  max resid 0.03165809 
## Run 116 stress 0.07176075 
## ... Procrustes: rmse 0.01168701  max resid 0.03164909 
## Run 117 stress 0.07160265 
## ... Procrustes: rmse 1.449236e-05  max resid 3.452698e-05 
## ... Similar to previous best
## Run 118 stress 0.07160275 
## ... Procrustes: rmse 0.0001450384  max resid 0.0003313765 
## ... Similar to previous best
## Run 119 stress 0.07160265 
## ... Procrustes: rmse 2.76184e-05  max resid 6.438965e-05 
## ... Similar to previous best
## Run 120 stress 0.07393039 
## Run 121 stress 0.08301712 
## Run 122 stress 0.07176081 
## ... Procrustes: rmse 0.01167397  max resid 0.03168819 
## Run 123 stress 0.07160269 
## ... Procrustes: rmse 0.0001174243  max resid 0.0002767288 
## ... Similar to previous best
## Run 124 stress 0.07393038 
## Run 125 stress 0.07160272 
## ... Procrustes: rmse 0.0001545011  max resid 0.0003653387 
## ... Similar to previous best
## Run 126 stress 0.07160277 
## ... Procrustes: rmse 0.000191297  max resid 0.0004514941 
## ... Similar to previous best
## Run 127 stress 0.07176075 
## ... Procrustes: rmse 0.01169305  max resid 0.03162192 
## Run 128 stress 0.07160265 
## ... Procrustes: rmse 3.469812e-05  max resid 8.021517e-05 
## ... Similar to previous best
## Run 129 stress 0.07393042 
## Run 130 stress 0.07176079 
## ... Procrustes: rmse 0.01170038  max resid 0.03159304 
## Run 131 stress 0.07160271 
## ... Procrustes: rmse 0.0001360087  max resid 0.0003230779 
## ... Similar to previous best
## Run 132 stress 0.0717608 
## ... Procrustes: rmse 0.01170147  max resid 0.03157771 
## Run 133 stress 0.08301716 
## Run 134 stress 0.0716028 
## ... Procrustes: rmse 0.000166137  max resid 0.0003778947 
## ... Similar to previous best
## Run 135 stress 0.07160274 
## ... Procrustes: rmse 0.0001562629  max resid 0.0003727927 
## ... Similar to previous best
## Run 136 stress 0.07393039 
## Run 137 stress 0.07176082 
## ... Procrustes: rmse 0.01170407  max resid 0.03157511 
## Run 138 stress 0.07160265 
## ... Procrustes: rmse 1.973499e-05  max resid 4.594623e-05 
## ... Similar to previous best
## Run 139 stress 0.07160274 
## ... Procrustes: rmse 0.0001643519  max resid 0.0003867434 
## ... Similar to previous best
## Run 140 stress 0.07393039 
## Run 141 stress 0.07160268 
## ... Procrustes: rmse 8.951241e-05  max resid 0.0002134394 
## ... Similar to previous best
## Run 142 stress 0.07393039 
## Run 143 stress 0.07176079 
## ... Procrustes: rmse 0.01170041  max resid 0.03158925 
## Run 144 stress 0.07393039 
## Run 145 stress 0.08301718 
## Run 146 stress 0.07160268 
## ... Procrustes: rmse 9.583863e-05  max resid 0.0002282422 
## ... Similar to previous best
## Run 147 stress 0.07393039 
## Run 148 stress 0.07176075 
## ... Procrustes: rmse 0.01168625  max resid 0.03165406 
## Run 149 stress 0.07393039 
## Run 150 stress 0.07160265 
## ... Procrustes: rmse 3.462578e-05  max resid 8.135235e-05 
## ... Similar to previous best
## Run 151 stress 0.07160266 
## ... Procrustes: rmse 6.05647e-05  max resid 0.000142976 
## ... Similar to previous best
## Run 152 stress 0.08301723 
## Run 153 stress 0.07160279 
## ... Procrustes: rmse 0.0001941418  max resid 0.0004654499 
## ... Similar to previous best
## Run 154 stress 0.07160268 
## ... Procrustes: rmse 9.817495e-05  max resid 0.0002314039 
## ... Similar to previous best
## Run 155 stress 0.07176076 
## ... Procrustes: rmse 0.01168273  max resid 0.03166982 
## Run 156 stress 0.07393039 
## Run 157 stress 0.07160274 
## ... Procrustes: rmse 0.0001668921  max resid 0.000395484 
## ... Similar to previous best
## Run 158 stress 0.07160265 
## ... Procrustes: rmse 4.082996e-05  max resid 9.668881e-05 
## ... Similar to previous best
## Run 159 stress 0.0739304 
## Run 160 stress 0.07176083 
## ... Procrustes: rmse 0.01170462  max resid 0.03156894 
## Run 161 stress 0.07393039 
## Run 162 stress 0.07160265 
## ... New best solution
## ... Procrustes: rmse 5.619934e-06  max resid 1.271432e-05 
## ... Similar to previous best
## Run 163 stress 0.07160273 
## ... Procrustes: rmse 0.0001506462  max resid 0.000356006 
## ... Similar to previous best
## Run 164 stress 0.07176078 
## ... Procrustes: rmse 0.01169926  max resid 0.03160685 
## Run 165 stress 0.07160267 
## ... Procrustes: rmse 8.653814e-05  max resid 0.0002050846 
## ... Similar to previous best
## Run 166 stress 0.07160272 
## ... Procrustes: rmse 0.0001423307  max resid 0.0003321306 
## ... Similar to previous best
## Run 167 stress 0.07160265 
## ... Procrustes: rmse 9.655595e-06  max resid 2.112013e-05 
## ... Similar to previous best
## Run 168 stress 0.07160267 
## ... Procrustes: rmse 7.861003e-05  max resid 0.0001886442 
## ... Similar to previous best
## Run 169 stress 0.0717608 
## ... Procrustes: rmse 0.01170309  max resid 0.0315913 
## Run 170 stress 0.07393038 
## Run 171 stress 0.07160265 
## ... Procrustes: rmse 4.441446e-05  max resid 0.0001011929 
## ... Similar to previous best
## Run 172 stress 0.07176077 
## ... Procrustes: rmse 0.01169883  max resid 0.031611 
## Run 173 stress 0.07176084 
## ... Procrustes: rmse 0.01170677  max resid 0.03157237 
## Run 174 stress 0.07176078 
## ... Procrustes: rmse 0.01169943  max resid 0.03160996 
## Run 175 stress 0.07160265 
## ... Procrustes: rmse 1.659485e-05  max resid 3.669776e-05 
## ... Similar to previous best
## Run 176 stress 0.0717608 
## ... Procrustes: rmse 0.01170356  max resid 0.0315888 
## Run 177 stress 0.07160265 
## ... Procrustes: rmse 1.632178e-05  max resid 3.916494e-05 
## ... Similar to previous best
## Run 178 stress 0.07160268 
## ... Procrustes: rmse 8.570283e-05  max resid 0.0001968139 
## ... Similar to previous best
## Run 179 stress 0.07176079 
## ... Procrustes: rmse 0.01170199  max resid 0.03159393 
## Run 180 stress 0.07393039 
## Run 181 stress 0.2590752 
## Run 182 stress 0.07176082 
## ... Procrustes: rmse 0.01170472  max resid 0.03158234 
## Run 183 stress 0.0716027 
## ... Procrustes: rmse 0.0001191968  max resid 0.0002845172 
## ... Similar to previous best
## Run 184 stress 0.07160267 
## ... Procrustes: rmse 7.734373e-05  max resid 0.0001793604 
## ... Similar to previous best
## Run 185 stress 0.07393041 
## Run 186 stress 0.07160272 
## ... Procrustes: rmse 0.0001458893  max resid 0.0003509757 
## ... Similar to previous best
## Run 187 stress 0.07160267 
## ... Procrustes: rmse 8.994857e-05  max resid 0.0002141146 
## ... Similar to previous best
## Run 188 stress 0.0716027 
## ... Procrustes: rmse 0.0001221685  max resid 0.0002884553 
## ... Similar to previous best
## Run 189 stress 0.07393039 
## Run 190 stress 0.07160265 
## ... Procrustes: rmse 1.691681e-05  max resid 3.830193e-05 
## ... Similar to previous best
## Run 191 stress 0.07176083 
## ... Procrustes: rmse 0.01170603  max resid 0.03157568 
## Run 192 stress 0.07160266 
## ... Procrustes: rmse 4.489198e-05  max resid 0.000106082 
## ... Similar to previous best
## Run 193 stress 0.07160269 
## ... Procrustes: rmse 0.0001030454  max resid 0.0002481922 
## ... Similar to previous best
## Run 194 stress 0.0716027 
## ... Procrustes: rmse 0.0001013929  max resid 0.0002353128 
## ... Similar to previous best
## Run 195 stress 0.07176075 
## ... Procrustes: rmse 0.01168878  max resid 0.03166555 
## Run 196 stress 0.0716027 
## ... Procrustes: rmse 0.0001150503  max resid 0.0002659311 
## ... Similar to previous best
## Run 197 stress 0.0716027 
## ... Procrustes: rmse 0.0001265313  max resid 0.0003011861 
## ... Similar to previous best
## Run 198 stress 0.07393039 
## Run 199 stress 0.07176077 
## ... Procrustes: rmse 0.0116963  max resid 0.0316197 
## Run 200 stress 0.07393039 
## Run 201 stress 0.07393039 
## Run 202 stress 0.08301708 
## Run 203 stress 0.07393039 
## Run 204 stress 0.07160265 
## ... Procrustes: rmse 4.41391e-05  max resid 0.0001053897 
## ... Similar to previous best
## Run 205 stress 0.07393039 
## Run 206 stress 0.07160268 
## ... Procrustes: rmse 9.374252e-05  max resid 0.0002275697 
## ... Similar to previous best
## Run 207 stress 0.07176077 
## ... Procrustes: rmse 0.01169899  max resid 0.03161077 
## Run 208 stress 0.07160268 
## ... Procrustes: rmse 9.371192e-05  max resid 0.0002251194 
## ... Similar to previous best
## Run 209 stress 0.07160265 
## ... Procrustes: rmse 3.813886e-05  max resid 8.759912e-05 
## ... Similar to previous best
## Run 210 stress 0.07393038 
## Run 211 stress 0.08301717 
## Run 212 stress 0.0716027 
## ... Procrustes: rmse 0.0001183307  max resid 0.0002851444 
## ... Similar to previous best
## Run 213 stress 0.07160266 
## ... Procrustes: rmse 3.065791e-05  max resid 6.298398e-05 
## ... Similar to previous best
## Run 214 stress 0.07393039 
## Run 215 stress 0.07160267 
## ... Procrustes: rmse 7.3897e-05  max resid 0.0001754248 
## ... Similar to previous best
## Run 216 stress 0.07160271 
## ... Procrustes: rmse 0.0001353685  max resid 0.0003240993 
## ... Similar to previous best
## Run 217 stress 0.07176074 
## ... Procrustes: rmse 0.01169049  max resid 0.03165037 
## Run 218 stress 0.07176075 
## ... Procrustes: rmse 0.01169639  max resid 0.03162109 
## Run 219 stress 0.07393039 
## Run 220 stress 0.0739304 
## Run 221 stress 0.07393041 
## Run 222 stress 0.07176076 
## ... Procrustes: rmse 0.01168551  max resid 0.03167233 
## Run 223 stress 0.07176087 
## ... Procrustes: rmse 0.01167479  max resid 0.03172247 
## Run 224 stress 0.07160266 
## ... Procrustes: rmse 6.012206e-05  max resid 0.0001398755 
## ... Similar to previous best
## Run 225 stress 0.07393039 
## Run 226 stress 0.07160278 
## ... Procrustes: rmse 0.0001673096  max resid 0.0004044414 
## ... Similar to previous best
## Run 227 stress 0.07176078 
## ... Procrustes: rmse 0.01170054  max resid 0.03160727 
## Run 228 stress 0.0716027 
## ... Procrustes: rmse 0.0001297625  max resid 0.0003102417 
## ... Similar to previous best
## Run 229 stress 0.0739304 
## Run 230 stress 0.07160269 
## ... Procrustes: rmse 0.0001152507  max resid 0.0002745046 
## ... Similar to previous best
## Run 231 stress 0.3553676 
## Run 232 stress 0.08301717 
## Run 233 stress 0.07176075 
## ... Procrustes: rmse 0.01169565  max resid 0.03163042 
## Run 234 stress 0.07160269 
## ... Procrustes: rmse 8.649651e-05  max resid 0.0002169687 
## ... Similar to previous best
## Run 235 stress 0.07160266 
## ... Procrustes: rmse 5.962711e-05  max resid 0.0001431647 
## ... Similar to previous best
## Run 236 stress 0.07176075 
## ... Procrustes: rmse 0.01169041  max resid 0.03163428 
## Run 237 stress 0.07393039 
## Run 238 stress 0.07160268 
## ... Procrustes: rmse 0.0001012951  max resid 0.0002413684 
## ... Similar to previous best
## Run 239 stress 0.08301712 
## Run 240 stress 0.0716027 
## ... Procrustes: rmse 0.0001274372  max resid 0.0003030719 
## ... Similar to previous best
## Run 241 stress 0.07393039 
## Run 242 stress 0.07160268 
## ... Procrustes: rmse 9.802366e-05  max resid 0.000228185 
## ... Similar to previous best
## Run 243 stress 0.07176075 
## ... Procrustes: rmse 0.0116931  max resid 0.03163293 
## Run 244 stress 0.0739304 
## Run 245 stress 0.07160271 
## ... Procrustes: rmse 0.0001283444  max resid 0.0003010782 
## ... Similar to previous best
## Run 246 stress 0.0739304 
## Run 247 stress 0.07160266 
## ... Procrustes: rmse 7.239306e-05  max resid 0.0001739496 
## ... Similar to previous best
## Run 248 stress 0.07393039 
## Run 249 stress 0.07160266 
## ... Procrustes: rmse 6.447712e-05  max resid 0.0001558857 
## ... Similar to previous best
## Run 250 stress 0.08301705 
## Run 251 stress 0.07176076 
## ... Procrustes: rmse 0.01168526  max resid 0.03167329 
## Run 252 stress 0.07176087 
## ... Procrustes: rmse 0.01167479  max resid 0.03172663 
## Run 253 stress 0.0739304 
## Run 254 stress 0.07160266 
## ... Procrustes: rmse 6.712724e-05  max resid 0.0001595119 
## ... Similar to previous best
## Run 255 stress 0.07160266 
## ... Procrustes: rmse 6.974063e-05  max resid 0.0001604577 
## ... Similar to previous best
## Run 256 stress 0.07160265 
## ... Procrustes: rmse 2.284846e-05  max resid 5.406245e-05 
## ... Similar to previous best
## Run 257 stress 0.07176076 
## ... Procrustes: rmse 0.01168499  max resid 0.03167487 
## Run 258 stress 0.07160267 
## ... Procrustes: rmse 7.798265e-05  max resid 0.0001865566 
## ... Similar to previous best
## Run 259 stress 0.0830171 
## Run 260 stress 0.07176075 
## ... Procrustes: rmse 0.0116889  max resid 0.03165705 
## Run 261 stress 0.07393039 
## Run 262 stress 0.07176077 
## ... Procrustes: rmse 0.01169891  max resid 0.03161118 
## Run 263 stress 0.07160275 
## ... Procrustes: rmse 0.0001735544  max resid 0.0004162883 
## ... Similar to previous best
## Run 264 stress 0.07160266 
## ... Procrustes: rmse 4.183227e-05  max resid 0.0001007711 
## ... Similar to previous best
## Run 265 stress 0.07176076 
## ... Procrustes: rmse 0.01168746  max resid 0.03166157 
## Run 266 stress 0.07393039 
## Run 267 stress 0.07160271 
## ... Procrustes: rmse 0.0001347905  max resid 0.0003238124 
## ... Similar to previous best
## Run 268 stress 0.07160265 
## ... Procrustes: rmse 5.691254e-06  max resid 1.042203e-05 
## ... Similar to previous best
## Run 269 stress 0.07160267 
## ... Procrustes: rmse 7.817916e-05  max resid 0.000188613 
## ... Similar to previous best
## Run 270 stress 0.07160267 
## ... Procrustes: rmse 5.418487e-05  max resid 0.0001266857 
## ... Similar to previous best
## Run 271 stress 0.07393039 
## Run 272 stress 0.07160271 
## ... Procrustes: rmse 0.0001318307  max resid 0.0003100539 
## ... Similar to previous best
## Run 273 stress 0.07176082 
## ... Procrustes: rmse 0.01170423  max resid 0.03158645 
## Run 274 stress 0.07160267 
## ... Procrustes: rmse 8.61156e-05  max resid 0.0002014406 
## ... Similar to previous best
## Run 275 stress 0.07160269 
## ... Procrustes: rmse 0.0001106186  max resid 0.0002656291 
## ... Similar to previous best
## Run 276 stress 0.07160266 
## ... Procrustes: rmse 6.344167e-05  max resid 0.0001344793 
## ... Similar to previous best
## Run 277 stress 0.08301729 
## Run 278 stress 0.07176076 
## ... Procrustes: rmse 0.01168564  max resid 0.03167069 
## Run 279 stress 0.08301707 
## Run 280 stress 0.0716027 
## ... Procrustes: rmse 0.000119408  max resid 0.000289761 
## ... Similar to previous best
## Run 281 stress 0.07160267 
## ... Procrustes: rmse 8.123445e-05  max resid 0.0001914509 
## ... Similar to previous best
## Run 282 stress 0.07393039 
## Run 283 stress 0.07393039 
## Run 284 stress 0.07176076 
## ... Procrustes: rmse 0.01168577  max resid 0.03167431 
## Run 285 stress 0.07393039 
## Run 286 stress 0.07160265 
## ... Procrustes: rmse 3.705481e-05  max resid 8.350041e-05 
## ... Similar to previous best
## Run 287 stress 0.07393039 
## Run 288 stress 0.07160272 
## ... Procrustes: rmse 0.0001476709  max resid 0.0003531494 
## ... Similar to previous best
## Run 289 stress 0.07160267 
## ... Procrustes: rmse 6.369206e-05  max resid 0.000154422 
## ... Similar to previous best
## Run 290 stress 0.07393039 
## Run 291 stress 0.07176075 
## ... Procrustes: rmse 0.01169504  max resid 0.03162735 
## Run 292 stress 0.07393041 
## Run 293 stress 0.07393039 
## Run 294 stress 0.07160276 
## ... Procrustes: rmse 0.0001781728  max resid 0.0004270027 
## ... Similar to previous best
## Run 295 stress 0.0739304 
## Run 296 stress 0.0739304 
## Run 297 stress 0.07160277 
## ... Procrustes: rmse 0.0001668936  max resid 0.0003821231 
## ... Similar to previous best
## Run 298 stress 0.07160265 
## ... Procrustes: rmse 1.359464e-05  max resid 3.357983e-05 
## ... Similar to previous best
## Run 299 stress 0.07176078 
## ... Procrustes: rmse 0.01169999  max resid 0.03161025 
## Run 300 stress 0.07160266 
## ... Procrustes: rmse 6.067416e-05  max resid 0.0001415542 
## ... Similar to previous best
## Run 301 stress 0.07393039 
## Run 302 stress 0.07393041 
## Run 303 stress 0.07160274 
## ... Procrustes: rmse 0.000144512  max resid 0.0003486494 
## ... Similar to previous best
## Run 304 stress 0.07393039 
## Run 305 stress 0.07160266 
## ... Procrustes: rmse 5.299918e-05  max resid 0.0001268803 
## ... Similar to previous best
## Run 306 stress 0.0739304 
## Run 307 stress 0.07176074 
## ... Procrustes: rmse 0.01169154  max resid 0.03164387 
## Run 308 stress 0.07160265 
## ... Procrustes: rmse 1.041348e-05  max resid 2.590466e-05 
## ... Similar to previous best
## Run 309 stress 0.07160265 
## ... Procrustes: rmse 1.237056e-05  max resid 3.071901e-05 
## ... Similar to previous best
## Run 310 stress 0.07160266 
## ... Procrustes: rmse 7.215505e-05  max resid 0.000172874 
## ... Similar to previous best
## Run 311 stress 0.07393039 
## Run 312 stress 0.07160274 
## ... Procrustes: rmse 0.0001541346  max resid 0.0003619438 
## ... Similar to previous best
## Run 313 stress 0.07176075 
## ... Procrustes: rmse 0.0116931  max resid 0.03163564 
## Run 314 stress 0.07160268 
## ... Procrustes: rmse 8.212623e-05  max resid 0.0001931986 
## ... Similar to previous best
## Run 315 stress 0.2836568 
## Run 316 stress 0.0739304 
## Run 317 stress 0.07160268 
## ... Procrustes: rmse 0.0001006972  max resid 0.0002406288 
## ... Similar to previous best
## Run 318 stress 0.07393039 
## Run 319 stress 0.07393038 
## Run 320 stress 0.07393043 
## Run 321 stress 0.07160272 
## ... Procrustes: rmse 0.0001260401  max resid 0.0002920433 
## ... Similar to previous best
## Run 322 stress 0.07176077 
## ... Procrustes: rmse 0.01169925  max resid 0.03161328 
## Run 323 stress 0.07160267 
## ... Procrustes: rmse 8.503914e-05  max resid 0.0002053948 
## ... Similar to previous best
## Run 324 stress 0.07176075 
## ... Procrustes: rmse 0.01169118  max resid 0.0316531 
## Run 325 stress 0.07393039 
## Run 326 stress 0.07176076 
## ... Procrustes: rmse 0.01169549  max resid 0.03161336 
## Run 327 stress 0.07393039 
## Run 328 stress 0.07160265 
## ... Procrustes: rmse 2.603553e-05  max resid 5.818371e-05 
## ... Similar to previous best
## Run 329 stress 0.07160267 
## ... Procrustes: rmse 3.808945e-05  max resid 8.651016e-05 
## ... Similar to previous best
## Run 330 stress 0.0716027 
## ... Procrustes: rmse 0.000121886  max resid 0.0002920764 
## ... Similar to previous best
## Run 331 stress 0.07393039 
## Run 332 stress 0.07393039 
## Run 333 stress 0.07176076 
## ... Procrustes: rmse 0.01168424  max resid 0.03167241 
## Run 334 stress 0.07393039 
## Run 335 stress 0.07160268 
## ... Procrustes: rmse 6.352984e-05  max resid 0.0001412564 
## ... Similar to previous best
## Run 336 stress 0.07160265 
## ... Procrustes: rmse 1.999729e-05  max resid 4.793321e-05 
## ... Similar to previous best
## Run 337 stress 0.07393041 
## Run 338 stress 0.0739304 
## Run 339 stress 0.07393039 
## Run 340 stress 0.07160271 
## ... Procrustes: rmse 0.0001059764  max resid 0.0002415449 
## ... Similar to previous best
## Run 341 stress 0.07176076 
## ... Procrustes: rmse 0.01168585  max resid 0.03167653 
## Run 342 stress 0.07176076 
## ... Procrustes: rmse 0.011698  max resid 0.03161925 
## Run 343 stress 0.07393039 
## Run 344 stress 0.07393038 
## Run 345 stress 0.07160267 
## ... Procrustes: rmse 9.057072e-05  max resid 0.0002170337 
## ... Similar to previous best
## Run 346 stress 0.07393039 
## Run 347 stress 0.07393039 
## Run 348 stress 0.07160265 
## ... Procrustes: rmse 4.148295e-05  max resid 0.0001006259 
## ... Similar to previous best
## Run 349 stress 0.07176078 
## ... Procrustes: rmse 0.01170118  max resid 0.03160497 
## Run 350 stress 0.07393039 
## Run 351 stress 0.07160269 
## ... Procrustes: rmse 0.0001068525  max resid 0.0002538978 
## ... Similar to previous best
## Run 352 stress 0.08301708 
## Run 353 stress 0.07176075 
## ... Procrustes: rmse 0.01169833  max resid 0.03162573 
## Run 354 stress 0.07160265 
## ... Procrustes: rmse 4.312583e-05  max resid 9.822838e-05 
## ... Similar to previous best
## Run 355 stress 0.07176076 
## ... Procrustes: rmse 0.01168982  max resid 0.03164871 
## Run 356 stress 0.07393043 
## Run 357 stress 0.07160265 
## ... Procrustes: rmse 1.234653e-05  max resid 2.533868e-05 
## ... Similar to previous best
## Run 358 stress 0.07176078 
## ... Procrustes: rmse 0.01170079  max resid 0.03160638 
## Run 359 stress 0.07176084 
## ... Procrustes: rmse 0.01167652  max resid 0.03171693 
## Run 360 stress 0.07393039 
## Run 361 stress 0.0830172 
## Run 362 stress 0.07160265 
## ... Procrustes: rmse 1.406332e-05  max resid 3.564954e-05 
## ... Similar to previous best
## Run 363 stress 0.07176078 
## ... Procrustes: rmse 0.01169954  max resid 0.03160635 
## Run 364 stress 0.07160269 
## ... Procrustes: rmse 0.0001062124  max resid 0.0002549635 
## ... Similar to previous best
## Run 365 stress 0.07176075 
## ... Procrustes: rmse 0.01169679  max resid 0.03162555 
## Run 366 stress 0.07160265 
## ... Procrustes: rmse 2.323365e-05  max resid 5.115137e-05 
## ... Similar to previous best
## Run 367 stress 0.07393039 
## Run 368 stress 0.07160265 
## ... Procrustes: rmse 2.758179e-05  max resid 5.313371e-05 
## ... Similar to previous best
## Run 369 stress 0.07160279 
## ... Procrustes: rmse 0.0002028691  max resid 0.0004857328 
## ... Similar to previous best
## Run 370 stress 0.07160266 
## ... Procrustes: rmse 6.679579e-05  max resid 0.000159827 
## ... Similar to previous best
## Run 371 stress 0.07393039 
## Run 372 stress 0.0739304 
## Run 373 stress 0.07160273 
## ... Procrustes: rmse 0.0001235399  max resid 0.000292988 
## ... Similar to previous best
## Run 374 stress 0.07393042 
## Run 375 stress 0.0739304 
## Run 376 stress 0.07160265 
## ... Procrustes: rmse 1.002629e-05  max resid 2.534257e-05 
## ... Similar to previous best
## Run 377 stress 0.07160265 
## ... Procrustes: rmse 2.522499e-05  max resid 5.89477e-05 
## ... Similar to previous best
## Run 378 stress 0.07176085 
## ... Procrustes: rmse 0.01170663  max resid 0.03157305 
## Run 379 stress 0.07393038 
## Run 380 stress 0.07176078 
## ... Procrustes: rmse 0.01168175  max resid 0.03168955 
## Run 381 stress 0.07160265 
## ... Procrustes: rmse 4.04705e-05  max resid 9.290628e-05 
## ... Similar to previous best
## Run 382 stress 0.07393039 
## Run 383 stress 0.07160266 
## ... Procrustes: rmse 6.375144e-05  max resid 0.0001484358 
## ... Similar to previous best
## Run 384 stress 0.07176075 
## ... Procrustes: rmse 0.0116936  max resid 0.0316379 
## Run 385 stress 0.07393039 
## Run 386 stress 0.07160266 
## ... Procrustes: rmse 6.46173e-05  max resid 0.0001542888 
## ... Similar to previous best
## Run 387 stress 0.07160265 
## ... Procrustes: rmse 4.257604e-05  max resid 0.0001019448 
## ... Similar to previous best
## Run 388 stress 0.08301712 
## Run 389 stress 0.07160266 
## ... Procrustes: rmse 3.66681e-05  max resid 8.309405e-05 
## ... Similar to previous best
## Run 390 stress 0.07160265 
## ... Procrustes: rmse 9.151617e-06  max resid 2.213402e-05 
## ... Similar to previous best
## Run 391 stress 0.07393038 
## Run 392 stress 0.07393039 
## Run 393 stress 0.08301711 
## Run 394 stress 0.07393039 
## Run 395 stress 0.07160265 
## ... New best solution
## ... Procrustes: rmse 4.213234e-06  max resid 9.371887e-06 
## ... Similar to previous best
## Run 396 stress 0.07393039 
## Run 397 stress 0.07160265 
## ... Procrustes: rmse 2.664635e-05  max resid 6.399464e-05 
## ... Similar to previous best
## Run 398 stress 0.07160265 
## ... Procrustes: rmse 4.032816e-05  max resid 9.618113e-05 
## ... Similar to previous best
## Run 399 stress 0.07160266 
## ... Procrustes: rmse 1.800675e-05  max resid 3.112381e-05 
## ... Similar to previous best
## Run 400 stress 0.07176076 
## ... Procrustes: rmse 0.01169688  max resid 0.03160804 
## Run 401 stress 0.07393039 
## Run 402 stress 0.07160266 
## ... Procrustes: rmse 6.760711e-05  max resid 0.0001535445 
## ... Similar to previous best
## Run 403 stress 0.07176075 
## ... Procrustes: rmse 0.01168677  max resid 0.03165372 
## Run 404 stress 0.07393039 
## Run 405 stress 0.07176082 
## ... Procrustes: rmse 0.01167599  max resid 0.03170565 
## Run 406 stress 0.07160267 
## ... Procrustes: rmse 7.717793e-05  max resid 0.0001819043 
## ... Similar to previous best
## Run 407 stress 0.07160266 
## ... Procrustes: rmse 4.857014e-05  max resid 0.0001139877 
## ... Similar to previous best
## Run 408 stress 0.07160273 
## ... Procrustes: rmse 0.000152721  max resid 0.0003613956 
## ... Similar to previous best
## Run 409 stress 0.07176075 
## ... Procrustes: rmse 0.01169374  max resid 0.03162158 
## Run 410 stress 0.07160265 
## ... Procrustes: rmse 3.353481e-05  max resid 7.981185e-05 
## ... Similar to previous best
## Run 411 stress 0.07160265 
## ... Procrustes: rmse 4.183819e-05  max resid 9.356302e-05 
## ... Similar to previous best
## Run 412 stress 0.07160267 
## ... Procrustes: rmse 7.980532e-05  max resid 0.0001854679 
## ... Similar to previous best
## Run 413 stress 0.0716027 
## ... Procrustes: rmse 9.9921e-05  max resid 0.0002319291 
## ... Similar to previous best
## Run 414 stress 0.07393039 
## Run 415 stress 0.07393039 
## Run 416 stress 0.07393039 
## Run 417 stress 0.07393039 
## Run 418 stress 0.07176075 
## ... Procrustes: rmse 0.01168542  max resid 0.03164128 
## Run 419 stress 0.07393039 
## Run 420 stress 0.07393039 
## Run 421 stress 0.07393038 
## Run 422 stress 0.07160266 
## ... Procrustes: rmse 1.242734e-05  max resid 2.539914e-05 
## ... Similar to previous best
## Run 423 stress 0.07393039 
## Run 424 stress 0.07393039 
## Run 425 stress 0.08301716 
## Run 426 stress 0.07393041 
## Run 427 stress 0.07393038 
## Run 428 stress 0.07176075 
## ... Procrustes: rmse 0.01168496  max resid 0.03165762 
## Run 429 stress 0.07160266 
## ... Procrustes: rmse 5.338398e-05  max resid 0.0001245813 
## ... Similar to previous best
## Run 430 stress 0.0739304 
## Run 431 stress 0.07160266 
## ... Procrustes: rmse 6.007132e-05  max resid 0.0001411722 
## ... Similar to previous best
## Run 432 stress 0.07176074 
## ... Procrustes: rmse 0.01169049  max resid 0.03163662 
## Run 433 stress 0.07160274 
## ... Procrustes: rmse 0.0001382404  max resid 0.0003309339 
## ... Similar to previous best
## Run 434 stress 0.0739304 
## Run 435 stress 0.07393039 
## Run 436 stress 0.07160269 
## ... Procrustes: rmse 0.0001001862  max resid 0.0002266394 
## ... Similar to previous best
## Run 437 stress 0.07160268 
## ... Procrustes: rmse 9.920468e-05  max resid 0.0002340457 
## ... Similar to previous best
## Run 438 stress 0.07176074 
## ... Procrustes: rmse 0.0116873  max resid 0.03163734 
## Run 439 stress 0.07160268 
## ... Procrustes: rmse 8.532214e-05  max resid 0.0001948804 
## ... Similar to previous best
## Run 440 stress 0.07393039 
## Run 441 stress 0.07393039 
## Run 442 stress 0.07160265 
## ... Procrustes: rmse 1.911395e-05  max resid 4.466838e-05 
## ... Similar to previous best
## Run 443 stress 0.07176078 
## ... Procrustes: rmse 0.01168057  max resid 0.03168366 
## Run 444 stress 0.0830171 
## Run 445 stress 0.07160265 
## ... Procrustes: rmse 1.318534e-05  max resid 2.980726e-05 
## ... Similar to previous best
## Run 446 stress 0.07393038 
## Run 447 stress 0.07176075 
## ... Procrustes: rmse 0.01168547  max resid 0.03165225 
## Run 448 stress 0.07160265 
## ... Procrustes: rmse 2.395998e-05  max resid 5.637104e-05 
## ... Similar to previous best
## Run 449 stress 0.08301712 
## Run 450 stress 0.07176079 
## ... Procrustes: rmse 0.01167891  max resid 0.031688 
## Run 451 stress 0.07393039 
## Run 452 stress 0.07393039 
## Run 453 stress 0.07160265 
## ... Procrustes: rmse 4.279763e-05  max resid 0.0001013768 
## ... Similar to previous best
## Run 454 stress 0.07160267 
## ... Procrustes: rmse 4.284634e-05  max resid 8.890966e-05 
## ... Similar to previous best
## Run 455 stress 0.07393039 
## Run 456 stress 0.07393039 
## Run 457 stress 0.07160265 
## ... Procrustes: rmse 3.922074e-05  max resid 9.250508e-05 
## ... Similar to previous best
## Run 458 stress 0.0716027 
## ... Procrustes: rmse 0.0001240823  max resid 0.0002929073 
## ... Similar to previous best
## Run 459 stress 0.07160265 
## ... Procrustes: rmse 3.751872e-05  max resid 9.103421e-05 
## ... Similar to previous best
## Run 460 stress 0.07176075 
## ... Procrustes: rmse 0.01169355  max resid 0.03162227 
## Run 461 stress 0.0716027 
## ... Procrustes: rmse 0.0001005091  max resid 0.0002287388 
## ... Similar to previous best
## Run 462 stress 0.07176077 
## ... Procrustes: rmse 0.01170114  max resid 0.03161104 
## Run 463 stress 0.07160266 
## ... Procrustes: rmse 6.546889e-05  max resid 0.0001530005 
## ... Similar to previous best
## Run 464 stress 0.07393044 
## Run 465 stress 0.07160275 
## ... Procrustes: rmse 0.0001713588  max resid 0.0004068394 
## ... Similar to previous best
## Run 466 stress 0.07393039 
## Run 467 stress 0.07176079 
## ... Procrustes: rmse 0.01167887  max resid 0.0316879 
## Run 468 stress 0.07160265 
## ... Procrustes: rmse 1.524358e-05  max resid 3.625046e-05 
## ... Similar to previous best
## Run 469 stress 0.07160269 
## ... Procrustes: rmse 0.0001102651  max resid 0.0002610989 
## ... Similar to previous best
## Run 470 stress 0.07393039 
## Run 471 stress 0.2850167 
## Run 472 stress 0.07160274 
## ... Procrustes: rmse 0.0001584783  max resid 0.0003768968 
## ... Similar to previous best
## Run 473 stress 0.07393039 
## Run 474 stress 0.07160267 
## ... Procrustes: rmse 8.705302e-05  max resid 0.0002000483 
## ... Similar to previous best
## Run 475 stress 0.07393039 
## Run 476 stress 0.07176074 
## ... Procrustes: rmse 0.01168824  max resid 0.03164733 
## Run 477 stress 0.08301722 
## Run 478 stress 0.0739304 
## Run 479 stress 0.0716027 
## ... Procrustes: rmse 0.0001156114  max resid 0.0002720852 
## ... Similar to previous best
## Run 480 stress 0.07393039 
## Run 481 stress 0.07393038 
## Run 482 stress 0.07160267 
## ... Procrustes: rmse 7.843495e-05  max resid 0.0001839565 
## ... Similar to previous best
## Run 483 stress 0.07160273 
## ... Procrustes: rmse 0.000145645  max resid 0.0003383665 
## ... Similar to previous best
## Run 484 stress 0.0739304 
## Run 485 stress 0.07160269 
## ... Procrustes: rmse 9.673296e-05  max resid 0.0002303918 
## ... Similar to previous best
## Run 486 stress 0.08301709 
## Run 487 stress 0.07176076 
## ... Procrustes: rmse 0.01169745  max resid 0.03161311 
## Run 488 stress 0.07176078 
## ... Procrustes: rmse 0.01169942  max resid 0.03159948 
## Run 489 stress 0.2891852 
## Run 490 stress 0.07176075 
## ... Procrustes: rmse 0.01168737  max resid 0.03165538 
## Run 491 stress 0.07393041 
## Run 492 stress 0.07393042 
## Run 493 stress 0.07160276 
## ... Procrustes: rmse 0.0001786477  max resid 0.0004252466 
## ... Similar to previous best
## Run 494 stress 0.07160272 
## ... Procrustes: rmse 0.0001442652  max resid 0.0003442261 
## ... Similar to previous best
## Run 495 stress 0.07393039 
## Run 496 stress 0.07160274 
## ... Procrustes: rmse 0.0001589061  max resid 0.0003764392 
## ... Similar to previous best
## Run 497 stress 0.07160265 
## ... Procrustes: rmse 2.063884e-05  max resid 4.443058e-05 
## ... Similar to previous best
## Run 498 stress 0.07176084 
## ... Procrustes: rmse 0.01170345  max resid 0.03157463 
## Run 499 stress 0.07160265 
## ... Procrustes: rmse 2.551855e-05  max resid 6.084865e-05 
## ... Similar to previous best
## Run 500 stress 0.0739304 
## *** Best solution repeated 43 times
# Stratified lakes and ocean sites
jpresso_NMDS <- metaMDS(jpresso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08013059 
## Run 1 stress 0.08028807 
## ... Procrustes: rmse 0.1216285  max resid 0.2678846 
## Run 2 stress 0.07081971 
## ... New best solution
## ... Procrustes: rmse 0.1001676  max resid 0.2610658 
## Run 3 stress 0.08433843 
## Run 4 stress 0.07263935 
## Run 5 stress 0.08028806 
## Run 6 stress 0.08013059 
## Run 7 stress 0.07063383 
## ... New best solution
## ... Procrustes: rmse 0.01443576  max resid 0.03159548 
## Run 8 stress 0.07081969 
## ... Procrustes: rmse 0.0144179  max resid 0.03131807 
## Run 9 stress 0.07081962 
## ... Procrustes: rmse 0.0143127  max resid 0.03120675 
## Run 10 stress 0.08199754 
## Run 11 stress 0.08013059 
## Run 12 stress 0.08679567 
## Run 13 stress 0.08433841 
## Run 14 stress 0.08679564 
## Run 15 stress 0.07263931 
## Run 16 stress 0.08013059 
## Run 17 stress 0.08028807 
## Run 18 stress 0.08013059 
## Run 19 stress 0.09109119 
## Run 20 stress 0.08028806 
## Run 21 stress 0.08199753 
## Run 22 stress 0.08013059 
## Run 23 stress 0.07081966 
## ... Procrustes: rmse 0.01426384  max resid 0.03115427 
## Run 24 stress 0.08679567 
## Run 25 stress 0.08013059 
## Run 26 stress 0.07263931 
## Run 27 stress 0.08199752 
## Run 28 stress 0.08433838 
## Run 29 stress 0.08028806 
## Run 30 stress 0.0726393 
## Run 31 stress 0.08013062 
## Run 32 stress 0.07081962 
## ... Procrustes: rmse 0.01431307  max resid 0.03120972 
## Run 33 stress 0.08199752 
## Run 34 stress 0.08679566 
## Run 35 stress 0.09109113 
## Run 36 stress 0.07063382 
## ... New best solution
## ... Procrustes: rmse 2.318977e-05  max resid 6.328976e-05 
## ... Similar to previous best
## Run 37 stress 0.09576455 
## Run 38 stress 0.08679567 
## Run 39 stress 0.07081964 
## ... Procrustes: rmse 0.0142692  max resid 0.0311568 
## Run 40 stress 0.08013059 
## Run 41 stress 0.07263931 
## Run 42 stress 0.08013059 
## Run 43 stress 0.07081969 
## ... Procrustes: rmse 0.01423113  max resid 0.03111497 
## Run 44 stress 0.08028807 
## Run 45 stress 0.08679565 
## Run 46 stress 0.07081965 
## ... Procrustes: rmse 0.01438359  max resid 0.03127992 
## Run 47 stress 0.08199752 
## Run 48 stress 0.09109115 
## Run 49 stress 0.08199752 
## Run 50 stress 0.08433838 
## Run 51 stress 0.08679564 
## Run 52 stress 0.08199752 
## Run 53 stress 0.07263932 
## Run 54 stress 0.08433843 
## Run 55 stress 0.07081966 
## ... Procrustes: rmse 0.01424951  max resid 0.03113409 
## Run 56 stress 0.07063384 
## ... Procrustes: rmse 4.210222e-05  max resid 0.0001148369 
## ... Similar to previous best
## Run 57 stress 0.07263931 
## Run 58 stress 0.08028806 
## Run 59 stress 0.07063391 
## ... Procrustes: rmse 3.807215e-05  max resid 0.0001089132 
## ... Similar to previous best
## Run 60 stress 0.07263929 
## Run 61 stress 0.07063384 
## ... Procrustes: rmse 2.744859e-05  max resid 7.461871e-05 
## ... Similar to previous best
## Run 62 stress 0.07063393 
## ... Procrustes: rmse 0.000257402  max resid 0.0007037748 
## ... Similar to previous best
## Run 63 stress 0.07081963 
## ... Procrustes: rmse 0.01427655  max resid 0.0311619 
## Run 64 stress 0.0726393 
## Run 65 stress 0.08679564 
## Run 66 stress 0.09109113 
## Run 67 stress 0.08013059 
## Run 68 stress 0.08679566 
## Run 69 stress 0.09109113 
## Run 70 stress 0.08028807 
## Run 71 stress 0.07263929 
## Run 72 stress 0.07081962 
## ... Procrustes: rmse 0.01428206  max resid 0.03117121 
## Run 73 stress 0.08679564 
## Run 74 stress 0.07063394 
## ... Procrustes: rmse 0.0001359501  max resid 0.0003751992 
## ... Similar to previous best
## Run 75 stress 0.07263929 
## Run 76 stress 0.08028807 
## Run 77 stress 0.07081967 
## ... Procrustes: rmse 0.01424623  max resid 0.03113205 
## Run 78 stress 0.08433842 
## Run 79 stress 0.08679564 
## Run 80 stress 0.08013059 
## Run 81 stress 0.08028808 
## Run 82 stress 0.08028806 
## Run 83 stress 0.07263933 
## Run 84 stress 0.08679564 
## Run 85 stress 0.07081967 
## ... Procrustes: rmse 0.01434797  max resid 0.03124707 
## Run 86 stress 0.08679564 
## Run 87 stress 0.08028807 
## Run 88 stress 0.0910912 
## Run 89 stress 0.08028806 
## Run 90 stress 0.08013059 
## Run 91 stress 0.08679567 
## Run 92 stress 0.08013061 
## Run 93 stress 0.09241952 
## Run 94 stress 0.0726393 
## Run 95 stress 0.08199752 
## Run 96 stress 0.07063387 
## ... Procrustes: rmse 0.0002045743  max resid 0.000560473 
## ... Similar to previous best
## Run 97 stress 0.0726393 
## Run 98 stress 0.08679564 
## Run 99 stress 0.07081967 
## ... Procrustes: rmse 0.0143923  max resid 0.03128843 
## Run 100 stress 0.07081977 
## ... Procrustes: rmse 0.01420212  max resid 0.03108497 
## Run 101 stress 0.08028806 
## Run 102 stress 0.08013059 
## Run 103 stress 0.09109113 
## Run 104 stress 0.07263931 
## Run 105 stress 0.08028806 
## Run 106 stress 0.0726393 
## Run 107 stress 0.08028807 
## Run 108 stress 0.07081963 
## ... Procrustes: rmse 0.01436952  max resid 0.03126489 
## Run 109 stress 0.09109117 
## Run 110 stress 0.07081968 
## ... Procrustes: rmse 0.01424317  max resid 0.03112682 
## Run 111 stress 0.07063386 
## ... Procrustes: rmse 0.0001697422  max resid 0.0004616871 
## ... Similar to previous best
## Run 112 stress 0.0706339 
## ... Procrustes: rmse 0.000229468  max resid 0.0006295248 
## ... Similar to previous best
## Run 113 stress 0.08199752 
## Run 114 stress 0.08013059 
## Run 115 stress 0.09576455 
## Run 116 stress 0.08679566 
## Run 117 stress 0.07263929 
## Run 118 stress 0.08028808 
## Run 119 stress 0.07081973 
## ... Procrustes: rmse 0.01421667  max resid 0.03109745 
## Run 120 stress 0.07263931 
## Run 121 stress 0.07263931 
## Run 122 stress 0.07063381 
## ... New best solution
## ... Procrustes: rmse 7.491991e-05  max resid 0.0002060166 
## ... Similar to previous best
## Run 123 stress 0.07081963 
## ... Procrustes: rmse 0.01432281  max resid 0.03120457 
## Run 124 stress 0.0726393 
## Run 125 stress 0.08013059 
## Run 126 stress 0.08433841 
## Run 127 stress 0.08199752 
## Run 128 stress 0.07081971 
## ... Procrustes: rmse 0.01417925  max resid 0.03104776 
## Run 129 stress 0.07081962 
## ... Procrustes: rmse 0.01424351  max resid 0.03111737 
## Run 130 stress 0.08679565 
## Run 131 stress 0.07263929 
## Run 132 stress 0.08199753 
## Run 133 stress 0.08679564 
## Run 134 stress 0.07063381 
## ... Procrustes: rmse 8.293638e-06  max resid 2.018006e-05 
## ... Similar to previous best
## Run 135 stress 0.07081962 
## ... Procrustes: rmse 0.01430539  max resid 0.03118485 
## Run 136 stress 0.08679564 
## Run 137 stress 0.08028806 
## Run 138 stress 0.08679568 
## Run 139 stress 0.07081964 
## ... Procrustes: rmse 0.0142234  max resid 0.03109691 
## Run 140 stress 0.08679564 
## Run 141 stress 0.08028807 
## Run 142 stress 0.09109114 
## Run 143 stress 0.08679566 
## Run 144 stress 0.08028807 
## Run 145 stress 0.07063387 
## ... Procrustes: rmse 0.0001234836  max resid 0.0003358288 
## ... Similar to previous best
## Run 146 stress 0.08679565 
## Run 147 stress 0.07263929 
## Run 148 stress 0.07081975 
## ... Procrustes: rmse 0.01416247  max resid 0.03102757 
## Run 149 stress 0.08028806 
## Run 150 stress 0.08013059 
## Run 151 stress 0.07263929 
## Run 152 stress 0.08028806 
## Run 153 stress 0.0867957 
## Run 154 stress 0.08028807 
## Run 155 stress 0.08013059 
## Run 156 stress 0.0843384 
## Run 157 stress 0.07263929 
## Run 158 stress 0.08028807 
## Run 159 stress 0.08199753 
## Run 160 stress 0.08433841 
## Run 161 stress 0.08433841 
## Run 162 stress 0.0708198 
## ... Procrustes: rmse 0.01415669  max resid 0.03102616 
## Run 163 stress 0.07063384 
## ... Procrustes: rmse 4.61451e-05  max resid 0.0001282268 
## ... Similar to previous best
## Run 164 stress 0.08028807 
## Run 165 stress 0.07063386 
## ... Procrustes: rmse 0.0001119732  max resid 0.0003062556 
## ... Similar to previous best
## Run 166 stress 0.08013059 
## Run 167 stress 0.08199752 
## Run 168 stress 0.08028807 
## Run 169 stress 0.08028807 
## Run 170 stress 0.07263931 
## Run 171 stress 0.07081964 
## ... Procrustes: rmse 0.01432929  max resid 0.03121159 
## Run 172 stress 0.07263931 
## Run 173 stress 0.08028806 
## Run 174 stress 0.0708197 
## ... Procrustes: rmse 0.01437033  max resid 0.03125562 
## Run 175 stress 0.07063382 
## ... Procrustes: rmse 5.194083e-05  max resid 0.0001437884 
## ... Similar to previous best
## Run 176 stress 0.07081978 
## ... Procrustes: rmse 0.01415582  max resid 0.03101882 
## Run 177 stress 0.07081972 
## ... Procrustes: rmse 0.01437865  max resid 0.03126263 
## Run 178 stress 0.07263931 
## Run 179 stress 0.07263929 
## Run 180 stress 0.07263929 
## Run 181 stress 0.0726393 
## Run 182 stress 0.0726393 
## Run 183 stress 0.07263929 
## Run 184 stress 0.07081965 
## ... Procrustes: rmse 0.01421543  max resid 0.03108858 
## Run 185 stress 0.08028807 
## Run 186 stress 0.08679564 
## Run 187 stress 0.08433841 
## Run 188 stress 0.08199752 
## Run 189 stress 0.08028807 
## Run 190 stress 0.07263932 
## Run 191 stress 0.08199754 
## Run 192 stress 0.08433847 
## Run 193 stress 0.08199752 
## Run 194 stress 0.09109121 
## Run 195 stress 0.08199754 
## Run 196 stress 0.08679567 
## Run 197 stress 0.08433838 
## Run 198 stress 0.08199752 
## Run 199 stress 0.07081977 
## ... Procrustes: rmse 0.014362  max resid 0.0312397 
## Run 200 stress 0.08679564 
## Run 201 stress 0.07263931 
## Run 202 stress 0.07063382 
## ... Procrustes: rmse 1.565205e-05  max resid 4.082808e-05 
## ... Similar to previous best
## Run 203 stress 0.08028807 
## Run 204 stress 0.0706339 
## ... Procrustes: rmse 0.0001589728  max resid 0.0004340755 
## ... Similar to previous best
## Run 205 stress 0.09242 
## Run 206 stress 0.0726393 
## Run 207 stress 0.08199752 
## Run 208 stress 0.07063388 
## ... Procrustes: rmse 9.225283e-05  max resid 0.000260233 
## ... Similar to previous best
## Run 209 stress 0.0726393 
## Run 210 stress 0.08028807 
## Run 211 stress 0.09109113 
## Run 212 stress 0.08013059 
## Run 213 stress 0.08028807 
## Run 214 stress 0.08013059 
## Run 215 stress 0.08199753 
## Run 216 stress 0.08028806 
## Run 217 stress 0.08679564 
## Run 218 stress 0.07063381 
## ... Procrustes: rmse 1.905988e-05  max resid 4.240456e-05 
## ... Similar to previous best
## Run 219 stress 0.08433842 
## Run 220 stress 0.0706339 
## ... Procrustes: rmse 0.000137526  max resid 0.0003791538 
## ... Similar to previous best
## Run 221 stress 0.07081973 
## ... Procrustes: rmse 0.01417386  max resid 0.03103612 
## Run 222 stress 0.07081972 
## ... Procrustes: rmse 0.0141959  max resid 0.03106134 
## Run 223 stress 0.08028806 
## Run 224 stress 0.08028806 
## Run 225 stress 0.08013059 
## Run 226 stress 0.08433851 
## Run 227 stress 0.0843384 
## Run 228 stress 0.08013059 
## Run 229 stress 0.09576463 
## Run 230 stress 0.09109113 
## Run 231 stress 0.08028806 
## Run 232 stress 0.07081968 
## ... Procrustes: rmse 0.01435547  max resid 0.03124037 
## Run 233 stress 0.07063391 
## ... Procrustes: rmse 0.0001631198  max resid 0.0004430532 
## ... Similar to previous best
## Run 234 stress 0.07081962 
## ... Procrustes: rmse 0.01424779  max resid 0.03112254 
## Run 235 stress 0.0726393 
## Run 236 stress 0.08028806 
## Run 237 stress 0.07081972 
## ... Procrustes: rmse 0.01417303  max resid 0.0310397 
## Run 238 stress 0.07063381 
## ... Procrustes: rmse 3.685894e-05  max resid 0.0001021626 
## ... Similar to previous best
## Run 239 stress 0.07081976 
## ... Procrustes: rmse 0.01415897  max resid 0.03102542 
## Run 240 stress 0.07081968 
## ... Procrustes: rmse 0.01419667  max resid 0.03106598 
## Run 241 stress 0.08679565 
## Run 242 stress 0.08199752 
## Run 243 stress 0.08679564 
## Run 244 stress 0.07081963 
## ... Procrustes: rmse 0.0142373  max resid 0.03111248 
## Run 245 stress 0.08679565 
## Run 246 stress 0.07063383 
## ... Procrustes: rmse 6.054426e-05  max resid 0.0001638785 
## ... Similar to previous best
## Run 247 stress 0.07063389 
## ... Procrustes: rmse 0.0001481602  max resid 0.0004045704 
## ... Similar to previous best
## Run 248 stress 0.07263934 
## Run 249 stress 0.07081964 
## ... Procrustes: rmse 0.01422054  max resid 0.03109192 
## Run 250 stress 0.07063387 
## ... Procrustes: rmse 0.0001231391  max resid 0.0003363398 
## ... Similar to previous best
## Run 251 stress 0.07263929 
## Run 252 stress 0.07081968 
## ... Procrustes: rmse 0.01435536  max resid 0.03124041 
## Run 253 stress 0.0726393 
## Run 254 stress 0.07263929 
## Run 255 stress 0.07063385 
## ... Procrustes: rmse 0.0001250359  max resid 0.0003427402 
## ... Similar to previous best
## Run 256 stress 0.08013059 
## Run 257 stress 0.08433839 
## Run 258 stress 0.07081975 
## ... Procrustes: rmse 0.01416352  max resid 0.03102879 
## Run 259 stress 0.08433838 
## Run 260 stress 0.08013059 
## Run 261 stress 0.0706339 
## ... Procrustes: rmse 0.0001544939  max resid 0.0004220551 
## ... Similar to previous best
## Run 262 stress 0.08433839 
## Run 263 stress 0.07263929 
## Run 264 stress 0.07081961 
## ... Procrustes: rmse 0.01429716  max resid 0.03117674 
## Run 265 stress 0.07081963 
## ... Procrustes: rmse 0.01423785  max resid 0.03111301 
## Run 266 stress 0.07081966 
## ... Procrustes: rmse 0.01420623  max resid 0.03107616 
## Run 267 stress 0.07081961 
## ... Procrustes: rmse 0.01425147  max resid 0.03112684 
## Run 268 stress 0.0843384 
## Run 269 stress 0.07263929 
## Run 270 stress 0.07063389 
## ... Procrustes: rmse 0.0001444612  max resid 0.000393727 
## ... Similar to previous best
## Run 271 stress 0.08028809 
## Run 272 stress 0.08199755 
## Run 273 stress 0.0843384 
## Run 274 stress 0.08028806 
## Run 275 stress 0.08433839 
## Run 276 stress 0.0726393 
## Run 277 stress 0.08013059 
## Run 278 stress 0.07081971 
## ... Procrustes: rmse 0.01437453  max resid 0.03125882 
## Run 279 stress 0.07063382 
## ... Procrustes: rmse 3.725692e-05  max resid 0.0001003705 
## ... Similar to previous best
## Run 280 stress 0.07263929 
## Run 281 stress 0.08028807 
## Run 282 stress 0.07081967 
## ... Procrustes: rmse 0.01419952  max resid 0.03107017 
## Run 283 stress 0.07063385 
## ... Procrustes: rmse 9.748924e-05  max resid 0.0002654394 
## ... Similar to previous best
## Run 284 stress 0.07063393 
## ... Procrustes: rmse 0.0001832369  max resid 0.0004992474 
## ... Similar to previous best
## Run 285 stress 0.08013059 
## Run 286 stress 0.0801306 
## Run 287 stress 0.08199752 
## Run 288 stress 0.09109114 
## Run 289 stress 0.07081977 
## ... Procrustes: rmse 0.0143922  max resid 0.03128143 
## Run 290 stress 0.0726393 
## Run 291 stress 0.08433849 
## Run 292 stress 0.09241892 
## Run 293 stress 0.08013059 
## Run 294 stress 0.0843384 
## Run 295 stress 0.08013059 
## Run 296 stress 0.08433851 
## Run 297 stress 0.09576488 
## Run 298 stress 0.08199752 
## Run 299 stress 0.09109117 
## Run 300 stress 0.07081969 
## ... Procrustes: rmse 0.01419183  max resid 0.03106275 
## Run 301 stress 0.07063394 
## ... Procrustes: rmse 0.0001915591  max resid 0.0005228065 
## ... Similar to previous best
## Run 302 stress 0.07263929 
## Run 303 stress 0.08199752 
## Run 304 stress 0.07263929 
## Run 305 stress 0.07063386 
## ... Procrustes: rmse 0.0001265361  max resid 0.0003497044 
## ... Similar to previous best
## Run 306 stress 0.08028809 
## Run 307 stress 0.08199753 
## Run 308 stress 0.07063391 
## ... Procrustes: rmse 0.0001672684  max resid 0.0004547721 
## ... Similar to previous best
## Run 309 stress 0.07063391 
## ... Procrustes: rmse 0.0001660329  max resid 0.0004528498 
## ... Similar to previous best
## Run 310 stress 0.07063392 
## ... Procrustes: rmse 0.0001731746  max resid 0.0004747149 
## ... Similar to previous best
## Run 311 stress 0.08028807 
## Run 312 stress 0.08028806 
## Run 313 stress 0.08013059 
## Run 314 stress 0.08679564 
## Run 315 stress 0.08199752 
## Run 316 stress 0.08679566 
## Run 317 stress 0.07263929 
## Run 318 stress 0.08199753 
## Run 319 stress 0.07263931 
## Run 320 stress 0.08433847 
## Run 321 stress 0.08679566 
## Run 322 stress 0.09590084 
## Run 323 stress 0.0726393 
## Run 324 stress 0.08028806 
## Run 325 stress 0.07263929 
## Run 326 stress 0.07263929 
## Run 327 stress 0.08199752 
## Run 328 stress 0.07263929 
## Run 329 stress 0.07081962 
## ... Procrustes: rmse 0.01424028  max resid 0.03111447 
## Run 330 stress 0.07063387 
## ... Procrustes: rmse 0.0001229211  max resid 0.0003330599 
## ... Similar to previous best
## Run 331 stress 0.09109115 
## Run 332 stress 0.07081962 
## ... Procrustes: rmse 0.01431621  max resid 0.03119674 
## Run 333 stress 0.08679564 
## Run 334 stress 0.09109113 
## Run 335 stress 0.08028806 
## Run 336 stress 0.07081969 
## ... Procrustes: rmse 0.01419127  max resid 0.0310618 
## Run 337 stress 0.08028806 
## Run 338 stress 0.07081963 
## ... Procrustes: rmse 0.01423519  max resid 0.03110864 
## Run 339 stress 0.08679564 
## Run 340 stress 0.07081965 
## ... Procrustes: rmse 0.01421457  max resid 0.03108594 
## Run 341 stress 0.07263929 
## Run 342 stress 0.07263929 
## Run 343 stress 0.07063383 
## ... Procrustes: rmse 4.111841e-05  max resid 9.99429e-05 
## ... Similar to previous best
## Run 344 stress 0.07081964 
## ... Procrustes: rmse 0.01433429  max resid 0.03121663 
## Run 345 stress 0.07263929 
## Run 346 stress 0.07081964 
## ... Procrustes: rmse 0.01422002  max resid 0.03109123 
## Run 347 stress 0.08028806 
## Run 348 stress 0.0726393 
## Run 349 stress 0.08028806 
## Run 350 stress 0.08199752 
## Run 351 stress 0.09109114 
## Run 352 stress 0.08013059 
## Run 353 stress 0.07081963 
## ... Procrustes: rmse 0.01432109  max resid 0.03120263 
## Run 354 stress 0.0706339 
## ... Procrustes: rmse 0.0001584617  max resid 0.0004331344 
## ... Similar to previous best
## Run 355 stress 0.08028807 
## Run 356 stress 0.07263929 
## Run 357 stress 0.09109115 
## Run 358 stress 0.07263932 
## Run 359 stress 0.07081981 
## ... Procrustes: rmse 0.01415222  max resid 0.03102117 
## Run 360 stress 0.08028807 
## Run 361 stress 0.08028808 
## Run 362 stress 0.07081964 
## ... Procrustes: rmse 0.01422519  max resid 0.03109797 
## Run 363 stress 0.09109113 
## Run 364 stress 0.07081962 
## ... Procrustes: rmse 0.01431309  max resid 0.03119285 
## Run 365 stress 0.08028807 
## Run 366 stress 0.07063382 
## ... Procrustes: rmse 3.922416e-05  max resid 0.000106394 
## ... Similar to previous best
## Run 367 stress 0.09590071 
## Run 368 stress 0.08199752 
## Run 369 stress 0.08679564 
## Run 370 stress 0.08199753 
## Run 371 stress 0.0801306 
## Run 372 stress 0.08679567 
## Run 373 stress 0.07081962 
## ... Procrustes: rmse 0.01424769  max resid 0.03112282 
## Run 374 stress 0.08028806 
## Run 375 stress 0.0801306 
## Run 376 stress 0.07081966 
## ... Procrustes: rmse 0.01434833  max resid 0.03123231 
## Run 377 stress 0.08013059 
## Run 378 stress 0.08433842 
## Run 379 stress 0.08679565 
## Run 380 stress 0.07063385 
## ... Procrustes: rmse 0.0001029723  max resid 0.0002813082 
## ... Similar to previous best
## Run 381 stress 0.07063388 
## ... Procrustes: rmse 0.0001601978  max resid 0.000439475 
## ... Similar to previous best
## Run 382 stress 0.08433841 
## Run 383 stress 0.07081968 
## ... Procrustes: rmse 0.01435879  max resid 0.03124303 
## Run 384 stress 0.07063389 
## ... Procrustes: rmse 0.000150545  max resid 0.0004111405 
## ... Similar to previous best
## Run 385 stress 0.09109113 
## Run 386 stress 0.07263929 
## Run 387 stress 0.08679567 
## Run 388 stress 0.07263932 
## Run 389 stress 0.07081969 
## ... Procrustes: rmse 0.01418944  max resid 0.03105906 
## Run 390 stress 0.07081964 
## ... Procrustes: rmse 0.01422456  max resid 0.03109868 
## Run 391 stress 0.0726393 
## Run 392 stress 0.08199752 
## Run 393 stress 0.08199752 
## Run 394 stress 0.08013062 
## Run 395 stress 0.09109113 
## Run 396 stress 0.08028808 
## Run 397 stress 0.08679565 
## Run 398 stress 0.08013059 
## Run 399 stress 0.08013062 
## Run 400 stress 0.08028806 
## Run 401 stress 0.07081962 
## ... Procrustes: rmse 0.01428769  max resid 0.03116433 
## Run 402 stress 0.07063392 
## ... Procrustes: rmse 0.0001975098  max resid 0.0005397572 
## ... Similar to previous best
## Run 403 stress 0.09109119 
## Run 404 stress 0.07263931 
## Run 405 stress 0.08028806 
## Run 406 stress 0.08013062 
## Run 407 stress 0.07063382 
## ... Procrustes: rmse 1.33013e-05  max resid 3.767129e-05 
## ... Similar to previous best
## Run 408 stress 0.0726393 
## Run 409 stress 0.08013059 
## Run 410 stress 0.08013059 
## Run 411 stress 0.07063391 
## ... Procrustes: rmse 0.0001588287  max resid 0.0004357718 
## ... Similar to previous best
## Run 412 stress 0.08028807 
## Run 413 stress 0.08199753 
## Run 414 stress 0.07263929 
## Run 415 stress 0.08679566 
## Run 416 stress 0.08013059 
## Run 417 stress 0.07063381 
## ... New best solution
## ... Procrustes: rmse 2.659776e-05  max resid 7.390187e-05 
## ... Similar to previous best
## Run 418 stress 0.07081966 
## ... Procrustes: rmse 0.01422062  max resid 0.03109723 
## Run 419 stress 0.08028806 
## Run 420 stress 0.0867957 
## Run 421 stress 0.08433839 
## Run 422 stress 0.09109117 
## Run 423 stress 0.08199753 
## Run 424 stress 0.0726393 
## Run 425 stress 0.07063392 
## ... Procrustes: rmse 0.0002001956  max resid 0.0005491038 
## ... Similar to previous best
## Run 426 stress 0.07081967 
## ... Procrustes: rmse 0.01437028  max resid 0.03125975 
## Run 427 stress 0.09109113 
## Run 428 stress 0.08679565 
## Run 429 stress 0.07081974 
## ... Procrustes: rmse 0.01440516  max resid 0.03129647 
## Run 430 stress 0.08028809 
## Run 431 stress 0.07081965 
## ... Procrustes: rmse 0.01435578  max resid 0.03124286 
## Run 432 stress 0.07081964 
## ... Procrustes: rmse 0.01434256  max resid 0.03123018 
## Run 433 stress 0.07081971 
## ... Procrustes: rmse 0.01419422  max resid 0.0310665 
## Run 434 stress 0.08028806 
## Run 435 stress 0.07081962 
## ... Procrustes: rmse 0.01425882  max resid 0.03113845 
## Run 436 stress 0.09109117 
## Run 437 stress 0.09576453 
## Run 438 stress 0.08433843 
## Run 439 stress 0.08028807 
## Run 440 stress 0.09109113 
## Run 441 stress 0.0726393 
## Run 442 stress 0.08679565 
## Run 443 stress 0.08013059 
## Run 444 stress 0.07081965 
## ... Procrustes: rmse 0.01423693  max resid 0.03111294 
## Run 445 stress 0.08679565 
## Run 446 stress 0.07063385 
## ... Procrustes: rmse 0.0001234666  max resid 0.000336591 
## ... Similar to previous best
## Run 447 stress 0.07063389 
## ... Procrustes: rmse 0.0001747839  max resid 0.0004764441 
## ... Similar to previous best
## Run 448 stress 0.08679565 
## Run 449 stress 0.07081964 
## ... Procrustes: rmse 0.01423654  max resid 0.03111505 
## Run 450 stress 0.08028806 
## Run 451 stress 0.07063383 
## ... Procrustes: rmse 6.630155e-05  max resid 0.0001815948 
## ... Similar to previous best
## Run 452 stress 0.07081969 
## ... Procrustes: rmse 0.01438021  max resid 0.03127042 
## Run 453 stress 0.08679565 
## Run 454 stress 0.08028807 
## Run 455 stress 0.08028807 
## Run 456 stress 0.08028806 
## Run 457 stress 0.09241906 
## Run 458 stress 0.0726393 
## Run 459 stress 0.08679565 
## Run 460 stress 0.09109118 
## Run 461 stress 0.0726393 
## Run 462 stress 0.08013059 
## Run 463 stress 0.08013059 
## Run 464 stress 0.07081965 
## ... Procrustes: rmse 0.01435009  max resid 0.03123549 
## Run 465 stress 0.08013059 
## Run 466 stress 0.09109113 
## Run 467 stress 0.0726393 
## Run 468 stress 0.07263929 
## Run 469 stress 0.07081964 
## ... Procrustes: rmse 0.0143492  max resid 0.0312364 
## Run 470 stress 0.07081968 
## ... Procrustes: rmse 0.014213  max resid 0.03108923 
## Run 471 stress 0.07081981 
## ... Procrustes: rmse 0.01440827  max resid 0.03129392 
## Run 472 stress 0.08679568 
## Run 473 stress 0.08028807 
## Run 474 stress 0.08028807 
## Run 475 stress 0.08679564 
## Run 476 stress 0.07081976 
## ... Procrustes: rmse 0.01417434  max resid 0.03104625 
## Run 477 stress 0.07063385 
## ... Procrustes: rmse 0.0001246857  max resid 0.0003425226 
## ... Similar to previous best
## Run 478 stress 0.08028806 
## Run 479 stress 0.07063385 
## ... Procrustes: rmse 0.0001328676  max resid 0.0003630609 
## ... Similar to previous best
## Run 480 stress 0.07063386 
## ... Procrustes: rmse 0.0001036634  max resid 0.000285938 
## ... Similar to previous best
## Run 481 stress 0.08013059 
## Run 482 stress 0.08028806 
## Run 483 stress 0.08199753 
## Run 484 stress 0.0843384 
## Run 485 stress 0.08028806 
## Run 486 stress 0.0726393 
## Run 487 stress 0.09109116 
## Run 488 stress 0.07263929 
## Run 489 stress 0.08013059 
## Run 490 stress 0.0726393 
## Run 491 stress 0.07081962 
## ... Procrustes: rmse 0.01425657  max resid 0.0311346 
## Run 492 stress 0.08028807 
## Run 493 stress 0.08199752 
## Run 494 stress 0.07063389 
## ... Procrustes: rmse 0.0001699104  max resid 0.0004658144 
## ... Similar to previous best
## Run 495 stress 0.0708197 
## ... Procrustes: rmse 0.01438502  max resid 0.03127579 
## Run 496 stress 0.08028807 
## Run 497 stress 0.08679564 
## Run 498 stress 0.07063384 
## ... Procrustes: rmse 3.061603e-05  max resid 5.890532e-05 
## ... Similar to previous best
## Run 499 stress 0.07081973 
## ... Procrustes: rmse 0.01440084  max resid 0.03129044 
## Run 500 stress 0.08028806 
## *** Best solution repeated 10 times
# Stratified lakes
jpress_NMDS <- metaMDS(jpress_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.1410449 
## Run 1 stress 0.1407298 
## ... New best solution
## ... Procrustes: rmse 0.2343121  max resid 0.3976002 
## Run 2 stress 0.1572668 
## Run 3 stress 0.1383681 
## ... New best solution
## ... Procrustes: rmse 0.2805275  max resid 0.3935151 
## Run 4 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 0.1766043  max resid 0.3636667 
## Run 5 stress 0.2496381 
## Run 6 stress 0.1551863 
## Run 7 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 1.212111e-06  max resid 2.451647e-06 
## ... Similar to previous best
## Run 8 stress 0.2008162 
## Run 9 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 9.645984e-07  max resid 1.755329e-06 
## ... Similar to previous best
## Run 10 stress 0.1598154 
## Run 11 stress 0.1407209 
## Run 12 stress 0.1572668 
## Run 13 stress 0.1410448 
## Run 14 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 1.690806e-07  max resid 2.307319e-07 
## ... Similar to previous best
## Run 15 stress 0.141045 
## Run 16 stress 0.1581642 
## Run 17 stress 0.1445811 
## Run 18 stress 0.1383681 
## Run 19 stress 0.1415299 
## Run 20 stress 0.284852 
## Run 21 stress 0.1796864 
## Run 22 stress 0.1415299 
## Run 23 stress 0.1551863 
## Run 24 stress 0.1415299 
## Run 25 stress 0.1320258 
## ... Procrustes: rmse 1.494942e-06  max resid 2.949999e-06 
## ... Similar to previous best
## Run 26 stress 0.1415299 
## Run 27 stress 0.1320258 
## ... Procrustes: rmse 1.102812e-06  max resid 2.172594e-06 
## ... Similar to previous best
## Run 28 stress 0.1551863 
## Run 29 stress 0.1320258 
## ... Procrustes: rmse 2.26123e-06  max resid 4.648488e-06 
## ... Similar to previous best
## Run 30 stress 0.2422667 
## Run 31 stress 0.2373121 
## Run 32 stress 0.1572668 
## Run 33 stress 0.1551863 
## Run 34 stress 0.1320258 
## ... Procrustes: rmse 4.93063e-07  max resid 9.694798e-07 
## ... Similar to previous best
## Run 35 stress 0.1320258 
## ... Procrustes: rmse 3.176985e-06  max resid 6.568006e-06 
## ... Similar to previous best
## Run 36 stress 0.1320258 
## ... Procrustes: rmse 5.625312e-07  max resid 1.113762e-06 
## ... Similar to previous best
## Run 37 stress 0.249638 
## Run 38 stress 0.1796864 
## Run 39 stress 0.1407298 
## Run 40 stress 0.1693717 
## Run 41 stress 0.1587623 
## Run 42 stress 0.1410452 
## Run 43 stress 0.1572668 
## Run 44 stress 0.1693717 
## Run 45 stress 0.1410448 
## Run 46 stress 0.1407298 
## Run 47 stress 0.1551863 
## Run 48 stress 0.1320258 
## ... Procrustes: rmse 1.348874e-06  max resid 2.658946e-06 
## ... Similar to previous best
## Run 49 stress 0.1415299 
## Run 50 stress 0.1320258 
## ... Procrustes: rmse 1.882757e-06  max resid 3.915235e-06 
## ... Similar to previous best
## Run 51 stress 0.1320258 
## ... Procrustes: rmse 4.898262e-06  max resid 1.0339e-05 
## ... Similar to previous best
## Run 52 stress 0.1383681 
## Run 53 stress 0.2085297 
## Run 54 stress 0.1407298 
## Run 55 stress 0.1628606 
## Run 56 stress 0.1445811 
## Run 57 stress 0.1771966 
## Run 58 stress 0.1383681 
## Run 59 stress 0.1407298 
## Run 60 stress 0.1320258 
## ... Procrustes: rmse 1.714694e-06  max resid 2.992819e-06 
## ... Similar to previous best
## Run 61 stress 0.1771966 
## Run 62 stress 0.1796865 
## Run 63 stress 0.1320258 
## ... Procrustes: rmse 1.844639e-06  max resid 3.796318e-06 
## ... Similar to previous best
## Run 64 stress 0.1962476 
## Run 65 stress 0.1383682 
## Run 66 stress 0.1693717 
## Run 67 stress 0.1415299 
## Run 68 stress 0.1572668 
## Run 69 stress 0.2848515 
## Run 70 stress 0.1407298 
## Run 71 stress 0.2550044 
## Run 72 stress 0.141045 
## Run 73 stress 0.1320258 
## ... Procrustes: rmse 1.745568e-06  max resid 3.575095e-06 
## ... Similar to previous best
## Run 74 stress 0.1383681 
## Run 75 stress 0.1407206 
## Run 76 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 1.409864e-06  max resid 2.892145e-06 
## ... Similar to previous best
## Run 77 stress 0.1970303 
## Run 78 stress 0.1693717 
## Run 79 stress 0.2600627 
## Run 80 stress 0.1445811 
## Run 81 stress 0.1551863 
## Run 82 stress 0.1410448 
## Run 83 stress 0.1693717 
## Run 84 stress 0.2373121 
## Run 85 stress 0.1581642 
## Run 86 stress 0.2085297 
## Run 87 stress 0.1407208 
## Run 88 stress 0.1929519 
## Run 89 stress 0.1802588 
## Run 90 stress 0.1410452 
## Run 91 stress 0.1551863 
## Run 92 stress 0.1415299 
## Run 93 stress 0.1583016 
## Run 94 stress 0.1407298 
## Run 95 stress 0.1320258 
## ... Procrustes: rmse 3.066572e-06  max resid 6.204811e-06 
## ... Similar to previous best
## Run 96 stress 0.1771969 
## Run 97 stress 0.1581642 
## Run 98 stress 0.1320258 
## ... Procrustes: rmse 2.210111e-06  max resid 4.602265e-06 
## ... Similar to previous best
## Run 99 stress 0.1445811 
## Run 100 stress 0.1551863 
## Run 101 stress 0.1771966 
## Run 102 stress 0.1415299 
## Run 103 stress 0.1320258 
## ... Procrustes: rmse 6.443352e-07  max resid 1.208888e-06 
## ... Similar to previous best
## Run 104 stress 0.2085297 
## Run 105 stress 0.1796865 
## Run 106 stress 0.1551863 
## Run 107 stress 0.1407298 
## Run 108 stress 0.1410452 
## Run 109 stress 0.1415299 
## Run 110 stress 0.1693717 
## Run 111 stress 0.1693717 
## Run 112 stress 0.1407207 
## Run 113 stress 0.1383682 
## Run 114 stress 0.1320258 
## ... Procrustes: rmse 9.346545e-07  max resid 1.885336e-06 
## ... Similar to previous best
## Run 115 stress 0.2015531 
## Run 116 stress 0.1383682 
## Run 117 stress 0.1383681 
## Run 118 stress 0.141045 
## Run 119 stress 0.1407298 
## Run 120 stress 0.1407298 
## Run 121 stress 0.1320258 
## ... Procrustes: rmse 3.487731e-06  max resid 7.216815e-06 
## ... Similar to previous best
## Run 122 stress 0.1551863 
## Run 123 stress 0.1551863 
## Run 124 stress 0.2456775 
## Run 125 stress 0.2373121 
## Run 126 stress 0.1434197 
## Run 127 stress 0.1320258 
## ... Procrustes: rmse 1.72077e-06  max resid 3.594897e-06 
## ... Similar to previous best
## Run 128 stress 0.1410451 
## Run 129 stress 0.1587623 
## Run 130 stress 0.1771969 
## Run 131 stress 0.1551863 
## Run 132 stress 0.1551863 
## Run 133 stress 0.1320258 
## ... Procrustes: rmse 1.537665e-06  max resid 3.085233e-06 
## ... Similar to previous best
## Run 134 stress 0.1581642 
## Run 135 stress 0.2373121 
## Run 136 stress 0.1407298 
## Run 137 stress 0.1551863 
## Run 138 stress 0.2005461 
## Run 139 stress 0.2224298 
## Run 140 stress 0.1383681 
## Run 141 stress 0.1663544 
## Run 142 stress 0.2073091 
## Run 143 stress 0.141045 
## Run 144 stress 0.2852212 
## Run 145 stress 0.2711187 
## Run 146 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 3.491454e-07  max resid 6.24115e-07 
## ... Similar to previous best
## Run 147 stress 0.2854403 
## Run 148 stress 0.1320258 
## ... Procrustes: rmse 6.075413e-06  max resid 1.096462e-05 
## ... Similar to previous best
## Run 149 stress 0.1407298 
## Run 150 stress 0.1383682 
## Run 151 stress 0.1410449 
## Run 152 stress 0.1407298 
## Run 153 stress 0.1320258 
## ... Procrustes: rmse 2.860557e-06  max resid 5.887377e-06 
## ... Similar to previous best
## Run 154 stress 0.3035573 
## Run 155 stress 0.1796865 
## Run 156 stress 0.1407207 
## Run 157 stress 0.1693717 
## Run 158 stress 0.1410449 
## Run 159 stress 0.1415299 
## Run 160 stress 0.1415299 
## Run 161 stress 0.1415299 
## Run 162 stress 0.1383681 
## Run 163 stress 0.3083098 
## Run 164 stress 0.1445811 
## Run 165 stress 0.1771969 
## Run 166 stress 0.1434197 
## Run 167 stress 0.1551863 
## Run 168 stress 0.1407298 
## Run 169 stress 0.1796865 
## Run 170 stress 0.2118437 
## Run 171 stress 0.1776793 
## Run 172 stress 0.1551863 
## Run 173 stress 0.1415299 
## Run 174 stress 0.1320258 
## ... Procrustes: rmse 1.733241e-06  max resid 3.566185e-06 
## ... Similar to previous best
## Run 175 stress 0.1320258 
## ... Procrustes: rmse 1.060275e-06  max resid 2.194319e-06 
## ... Similar to previous best
## Run 176 stress 0.1693717 
## Run 177 stress 0.1320258 
## ... Procrustes: rmse 1.861087e-06  max resid 3.781106e-06 
## ... Similar to previous best
## Run 178 stress 0.1771969 
## Run 179 stress 0.1572668 
## Run 180 stress 0.1415299 
## Run 181 stress 0.1320258 
## ... Procrustes: rmse 8.271655e-07  max resid 1.003771e-06 
## ... Similar to previous best
## Run 182 stress 0.1320258 
## ... Procrustes: rmse 7.293011e-07  max resid 1.131321e-06 
## ... Similar to previous best
## Run 183 stress 0.1320258 
## ... Procrustes: rmse 1.009561e-06  max resid 2.069319e-06 
## ... Similar to previous best
## Run 184 stress 0.1551863 
## Run 185 stress 0.1583016 
## Run 186 stress 0.2842805 
## Run 187 stress 0.2691259 
## Run 188 stress 0.1415299 
## Run 189 stress 0.1628606 
## Run 190 stress 0.1693717 
## Run 191 stress 0.1383681 
## Run 192 stress 0.1415299 
## Run 193 stress 0.1583016 
## Run 194 stress 0.1320258 
## ... Procrustes: rmse 2.041785e-06  max resid 4.265685e-06 
## ... Similar to previous best
## Run 195 stress 0.1663544 
## Run 196 stress 0.1410454 
## Run 197 stress 0.1771969 
## Run 198 stress 0.1410451 
## Run 199 stress 0.1320258 
## ... Procrustes: rmse 8.447296e-07  max resid 1.462162e-06 
## ... Similar to previous best
## Run 200 stress 0.2224298 
## Run 201 stress 0.1434197 
## Run 202 stress 0.1415299 
## Run 203 stress 0.2015531 
## Run 204 stress 0.1383682 
## Run 205 stress 0.1410449 
## Run 206 stress 0.1628606 
## Run 207 stress 0.1415299 
## Run 208 stress 0.1693717 
## Run 209 stress 0.141045 
## Run 210 stress 0.1410455 
## Run 211 stress 0.2456775 
## Run 212 stress 0.1383682 
## Run 213 stress 0.1320258 
## ... Procrustes: rmse 1.552691e-06  max resid 3.248409e-06 
## ... Similar to previous best
## Run 214 stress 0.1830332 
## Run 215 stress 0.1320258 
## ... Procrustes: rmse 7.436971e-07  max resid 1.213331e-06 
## ... Similar to previous best
## Run 216 stress 0.1407298 
## Run 217 stress 0.1628606 
## Run 218 stress 0.1572668 
## Run 219 stress 0.1572668 
## Run 220 stress 0.1445811 
## Run 221 stress 0.1383681 
## Run 222 stress 0.1693717 
## Run 223 stress 0.1383682 
## Run 224 stress 0.1415299 
## Run 225 stress 0.1320258 
## ... Procrustes: rmse 1.975985e-06  max resid 4.055571e-06 
## ... Similar to previous best
## Run 226 stress 0.1693717 
## Run 227 stress 0.2496389 
## Run 228 stress 0.1320258 
## ... Procrustes: rmse 1.432509e-06  max resid 3.007556e-06 
## ... Similar to previous best
## Run 229 stress 0.1320258 
## ... Procrustes: rmse 1.666833e-07  max resid 3.318891e-07 
## ... Similar to previous best
## Run 230 stress 0.1771966 
## Run 231 stress 0.2422742 
## Run 232 stress 0.1434197 
## Run 233 stress 0.2385029 
## Run 234 stress 0.2842805 
## Run 235 stress 0.1551863 
## Run 236 stress 0.1551863 
## Run 237 stress 0.1415299 
## Run 238 stress 0.1383682 
## Run 239 stress 0.1410448 
## Run 240 stress 0.1776793 
## Run 241 stress 0.1970303 
## Run 242 stress 0.1320258 
## ... Procrustes: rmse 1.538549e-06  max resid 3.190734e-06 
## ... Similar to previous best
## Run 243 stress 0.1383682 
## Run 244 stress 0.1434197 
## Run 245 stress 0.1802587 
## Run 246 stress 0.1598154 
## Run 247 stress 0.1410448 
## Run 248 stress 0.1383682 
## Run 249 stress 0.1771969 
## Run 250 stress 0.1410449 
## Run 251 stress 0.1551863 
## Run 252 stress 0.1407298 
## Run 253 stress 0.1410453 
## Run 254 stress 0.1663544 
## Run 255 stress 0.1415299 
## Run 256 stress 0.2456775 
## Run 257 stress 0.1410452 
## Run 258 stress 0.1320258 
## ... Procrustes: rmse 1.742441e-06  max resid 3.547865e-06 
## ... Similar to previous best
## Run 259 stress 0.1407298 
## Run 260 stress 0.1407298 
## Run 261 stress 0.1410453 
## Run 262 stress 0.1415299 
## Run 263 stress 0.1771966 
## Run 264 stress 0.1693717 
## Run 265 stress 0.2852157 
## Run 266 stress 0.1962476 
## Run 267 stress 0.2456775 
## Run 268 stress 0.1776793 
## Run 269 stress 0.2711712 
## Run 270 stress 0.141045 
## Run 271 stress 0.1383682 
## Run 272 stress 0.1551863 
## Run 273 stress 0.2074935 
## Run 274 stress 0.2775525 
## Run 275 stress 0.2015531 
## Run 276 stress 0.1410448 
## Run 277 stress 0.1434197 
## Run 278 stress 0.1929519 
## Run 279 stress 0.3006869 
## Run 280 stress 0.1583016 
## Run 281 stress 0.1383681 
## Run 282 stress 0.1415299 
## Run 283 stress 0.1830332 
## Run 284 stress 0.2562346 
## Run 285 stress 0.1551863 
## Run 286 stress 0.1830332 
## Run 287 stress 0.1998955 
## Run 288 stress 0.1583016 
## Run 289 stress 0.2951814 
## Run 290 stress 0.1572668 
## Run 291 stress 0.2005461 
## Run 292 stress 0.1415299 
## Run 293 stress 0.1581642 
## Run 294 stress 0.1415299 
## Run 295 stress 0.1693717 
## Run 296 stress 0.1434197 
## Run 297 stress 0.1445811 
## Run 298 stress 0.1320258 
## ... Procrustes: rmse 4.190172e-06  max resid 8.791318e-06 
## ... Similar to previous best
## Run 299 stress 0.1962476 
## Run 300 stress 0.2520602 
## Run 301 stress 0.1410451 
## Run 302 stress 0.1320258 
## ... Procrustes: rmse 1.749634e-06  max resid 3.692617e-06 
## ... Similar to previous best
## Run 303 stress 0.1572668 
## Run 304 stress 0.1830332 
## Run 305 stress 0.2385029 
## Run 306 stress 0.2842805 
## Run 307 stress 0.1407298 
## Run 308 stress 0.1407207 
## Run 309 stress 0.1415299 
## Run 310 stress 0.1383681 
## Run 311 stress 0.1415299 
## Run 312 stress 0.1407206 
## Run 313 stress 0.1693717 
## Run 314 stress 0.2385029 
## Run 315 stress 0.1410448 
## Run 316 stress 0.1962476 
## Run 317 stress 0.1407298 
## Run 318 stress 0.1830332 
## Run 319 stress 0.1383681 
## Run 320 stress 0.1693717 
## Run 321 stress 0.1383681 
## Run 322 stress 0.1572668 
## Run 323 stress 0.2510079 
## Run 324 stress 0.1320258 
## ... Procrustes: rmse 8.690872e-07  max resid 1.654074e-06 
## ... Similar to previous best
## Run 325 stress 0.1802752 
## Run 326 stress 0.1830332 
## Run 327 stress 0.141045 
## Run 328 stress 0.1970303 
## Run 329 stress 0.1551863 
## Run 330 stress 0.1410448 
## Run 331 stress 0.1693717 
## Run 332 stress 0.1434197 
## Run 333 stress 0.1415299 
## Run 334 stress 0.1383681 
## Run 335 stress 0.1320258 
## ... Procrustes: rmse 1.952088e-06  max resid 3.87212e-06 
## ... Similar to previous best
## Run 336 stress 0.1583016 
## Run 337 stress 0.1407207 
## Run 338 stress 0.1572668 
## Run 339 stress 0.1572668 
## Run 340 stress 0.1962476 
## Run 341 stress 0.1383682 
## Run 342 stress 0.1320258 
## ... Procrustes: rmse 2.172946e-06  max resid 4.340704e-06 
## ... Similar to previous best
## Run 343 stress 0.1410449 
## Run 344 stress 0.1628606 
## Run 345 stress 0.1410449 
## Run 346 stress 0.1410449 
## Run 347 stress 0.1410448 
## Run 348 stress 0.1802752 
## Run 349 stress 0.1320258 
## ... Procrustes: rmse 1.020362e-06  max resid 2.013482e-06 
## ... Similar to previous best
## Run 350 stress 0.1581642 
## Run 351 stress 0.1320258 
## ... Procrustes: rmse 1.555022e-06  max resid 3.110007e-06 
## ... Similar to previous best
## Run 352 stress 0.2501063 
## Run 353 stress 0.1551863 
## Run 354 stress 0.1572668 
## Run 355 stress 0.1410449 
## Run 356 stress 0.1407298 
## Run 357 stress 0.1572668 
## Run 358 stress 0.1320258 
## ... Procrustes: rmse 4.30396e-07  max resid 8.29372e-07 
## ... Similar to previous best
## Run 359 stress 0.1320258 
## ... Procrustes: rmse 2.659659e-06  max resid 5.453057e-06 
## ... Similar to previous best
## Run 360 stress 0.1407208 
## Run 361 stress 0.2514078 
## Run 362 stress 0.1410452 
## Run 363 stress 0.1383681 
## Run 364 stress 0.1693717 
## Run 365 stress 0.1410448 
## Run 366 stress 0.1383681 
## Run 367 stress 0.2550047 
## Run 368 stress 0.1383682 
## Run 369 stress 0.1320258 
## ... Procrustes: rmse 1.794825e-06  max resid 3.688082e-06 
## ... Similar to previous best
## Run 370 stress 0.1407298 
## Run 371 stress 0.1551863 
## Run 372 stress 0.2422742 
## Run 373 stress 0.1693717 
## Run 374 stress 0.1998955 
## Run 375 stress 0.1663544 
## Run 376 stress 0.1415299 
## Run 377 stress 0.1771969 
## Run 378 stress 0.3083098 
## Run 379 stress 0.2227527 
## Run 380 stress 0.1551863 
## Run 381 stress 0.1320258 
## ... Procrustes: rmse 9.685182e-07  max resid 1.981182e-06 
## ... Similar to previous best
## Run 382 stress 0.2775539 
## Run 383 stress 0.1320258 
## ... Procrustes: rmse 7.005725e-07  max resid 1.383107e-06 
## ... Similar to previous best
## Run 384 stress 0.1551863 
## Run 385 stress 0.1628606 
## Run 386 stress 0.1320258 
## ... Procrustes: rmse 6.190038e-07  max resid 9.547497e-07 
## ... Similar to previous best
## Run 387 stress 0.1320258 
## ... Procrustes: rmse 5.354578e-07  max resid 1.060919e-06 
## ... Similar to previous best
## Run 388 stress 0.1802752 
## Run 389 stress 0.2562346 
## Run 390 stress 0.1320258 
## ... Procrustes: rmse 2.914011e-06  max resid 5.999083e-06 
## ... Similar to previous best
## Run 391 stress 0.1320258 
## ... Procrustes: rmse 2.188709e-06  max resid 4.498843e-06 
## ... Similar to previous best
## Run 392 stress 0.1415299 
## Run 393 stress 0.1583016 
## Run 394 stress 0.1320258 
## ... Procrustes: rmse 6.901546e-07  max resid 1.379601e-06 
## ... Similar to previous best
## Run 395 stress 0.1320258 
## ... Procrustes: rmse 2.477668e-06  max resid 5.099946e-06 
## ... Similar to previous best
## Run 396 stress 0.1320258 
## ... New best solution
## ... Procrustes: rmse 3.419159e-07  max resid 7.062685e-07 
## ... Similar to previous best
## Run 397 stress 0.1383681 
## Run 398 stress 0.1572668 
## Run 399 stress 0.1771969 
## Run 400 stress 0.1776793 
## Run 401 stress 0.2562346 
## Run 402 stress 0.1407298 
## Run 403 stress 0.1628606 
## Run 404 stress 0.1410448 
## Run 405 stress 0.1320258 
## ... Procrustes: rmse 8.336497e-07  max resid 1.339729e-06 
## ... Similar to previous best
## Run 406 stress 0.1434197 
## Run 407 stress 0.1410449 
## Run 408 stress 0.1383681 
## Run 409 stress 0.141045 
## Run 410 stress 0.1410453 
## Run 411 stress 0.1583016 
## Run 412 stress 0.1771969 
## Run 413 stress 0.2578647 
## Run 414 stress 0.1970303 
## Run 415 stress 0.1383681 
## Run 416 stress 0.1693717 
## Run 417 stress 0.1320258 
## ... Procrustes: rmse 1.334601e-06  max resid 2.726652e-06 
## ... Similar to previous best
## Run 418 stress 0.1410448 
## Run 419 stress 0.1383681 
## Run 420 stress 0.1383681 
## Run 421 stress 0.1415299 
## Run 422 stress 0.2385029 
## Run 423 stress 0.2578643 
## Run 424 stress 0.1962476 
## Run 425 stress 0.1410448 
## Run 426 stress 0.1320258 
## ... Procrustes: rmse 2.624149e-07  max resid 4.70297e-07 
## ... Similar to previous best
## Run 427 stress 0.2612821 
## Run 428 stress 0.2384387 
## Run 429 stress 0.1572668 
## Run 430 stress 0.1383681 
## Run 431 stress 0.1776793 
## Run 432 stress 0.1383681 
## Run 433 stress 0.1415299 
## Run 434 stress 0.1407298 
## Run 435 stress 0.141045 
## Run 436 stress 0.1410448 
## Run 437 stress 0.2008163 
## Run 438 stress 0.1693717 
## Run 439 stress 0.1410449 
## Run 440 stress 0.1410452 
## Run 441 stress 0.1383681 
## Run 442 stress 0.1383681 
## Run 443 stress 0.1551863 
## Run 444 stress 0.1551863 
## Run 445 stress 0.2385029 
## Run 446 stress 0.1383681 
## Run 447 stress 0.1583016 
## Run 448 stress 0.1320258 
## ... Procrustes: rmse 1.277128e-06  max resid 2.422119e-06 
## ... Similar to previous best
## Run 449 stress 0.1962476 
## Run 450 stress 0.1407206 
## Run 451 stress 0.1771969 
## Run 452 stress 0.1320258 
## ... Procrustes: rmse 2.0833e-06  max resid 4.385743e-06 
## ... Similar to previous best
## Run 453 stress 0.1410453 
## Run 454 stress 0.1410451 
## Run 455 stress 0.1572668 
## Run 456 stress 0.1796865 
## Run 457 stress 0.1796864 
## Run 458 stress 0.1415299 
## Run 459 stress 0.1383682 
## Run 460 stress 0.1407208 
## Run 461 stress 0.1415299 
## Run 462 stress 0.1407298 
## Run 463 stress 0.2695314 
## Run 464 stress 0.1410449 
## Run 465 stress 0.1383681 
## Run 466 stress 0.1320258 
## ... Procrustes: rmse 1.653391e-06  max resid 3.320569e-06 
## ... Similar to previous best
## Run 467 stress 0.1407298 
## Run 468 stress 0.1551863 
## Run 469 stress 0.2008163 
## Run 470 stress 0.1383682 
## Run 471 stress 0.1383681 
## Run 472 stress 0.1407298 
## Run 473 stress 0.1415299 
## Run 474 stress 0.1551863 
## Run 475 stress 0.141045 
## Run 476 stress 0.1383682 
## Run 477 stress 0.1693717 
## Run 478 stress 0.1796865 
## Run 479 stress 0.1551863 
## Run 480 stress 0.1415299 
## Run 481 stress 0.1410452 
## Run 482 stress 0.2842805 
## Run 483 stress 0.1320258 
## ... Procrustes: rmse 1.902489e-06  max resid 3.932492e-06 
## ... Similar to previous best
## Run 484 stress 0.2385029 
## Run 485 stress 0.1410448 
## Run 486 stress 0.1830332 
## Run 487 stress 0.2615852 
## Run 488 stress 0.1415299 
## Run 489 stress 0.3067624 
## Run 490 stress 0.1598154 
## Run 491 stress 0.1407207 
## Run 492 stress 0.1598154 
## Run 493 stress 0.1383681 
## Run 494 stress 0.1581642 
## Run 495 stress 0.1320258 
## ... Procrustes: rmse 1.13266e-06  max resid 2.345678e-06 
## ... Similar to previous best
## Run 496 stress 0.1383681 
## Run 497 stress 0.2015531 
## Run 498 stress 0.1320258 
## ... Procrustes: rmse 1.43965e-06  max resid 2.921547e-06 
## ... Similar to previous best
## Run 499 stress 0.1320258 
## ... Procrustes: rmse 2.710614e-06  max resid 5.592526e-06 
## ... Similar to previous best
## Run 500 stress 0.1320258 
## ... Procrustes: rmse 2.102021e-06  max resid 4.303612e-06 
## ... Similar to previous best
## *** Best solution repeated 12 times
## Dice-Sørensen
# All sites 
spres_NMDS <- metaMDS(spres_dist, try = 1000, parallel = 4)
## Run 0 stress 0.09059979 
## Run 1 stress 0.09042048 
## ... New best solution
## ... Procrustes: rmse 0.04404963  max resid 0.1176603 
## Run 2 stress 0.09634398 
## Run 3 stress 0.09229282 
## Run 4 stress 0.0902272 
## ... New best solution
## ... Procrustes: rmse 0.03702241  max resid 0.1199092 
## Run 5 stress 0.09056104 
## ... Procrustes: rmse 0.0373467  max resid 0.1197193 
## Run 6 stress 0.09042045 
## ... Procrustes: rmse 0.03700912  max resid 0.1189916 
## Run 7 stress 0.09089992 
## Run 8 stress 0.09090427 
## Run 9 stress 0.095995 
## Run 10 stress 0.1051254 
## Run 11 stress 0.08976357 
## ... New best solution
## ... Procrustes: rmse 0.01098212  max resid 0.04065768 
## Run 12 stress 0.09056096 
## Run 13 stress 0.09056095 
## Run 14 stress 0.1077495 
## Run 15 stress 0.09172719 
## Run 16 stress 0.105125 
## Run 17 stress 0.09066135 
## Run 18 stress 0.09317779 
## Run 19 stress 0.1060173 
## Run 20 stress 0.09599488 
## *** Best solution was not repeated -- monoMDS stopping criteria:
##     20: stress ratio > sratmax
# Mixed and stratified lakes
spresms_NMDS <- metaMDS(spresms_dist, try = 1000, parallel = 4)
## Run 0 stress 0.08503579 
## Run 1 stress 0.09159087 
## Run 2 stress 0.09337262 
## Run 3 stress 0.09168933 
## Run 4 stress 0.09381849 
## Run 5 stress 0.09030393 
## Run 6 stress 0.09030416 
## Run 7 stress 0.09417769 
## Run 8 stress 0.08503464 
## ... New best solution
## ... Procrustes: rmse 0.001346346  max resid 0.003457318 
## ... Similar to previous best
## Run 9 stress 0.085035 
## ... Procrustes: rmse 0.0003217801  max resid 0.0006382604 
## ... Similar to previous best
## Run 10 stress 0.2547728 
## Run 11 stress 0.0997 
## Run 12 stress 0.09168949 
## Run 13 stress 0.09168958 
## Run 14 stress 0.2574363 
## Run 15 stress 0.09286086 
## Run 16 stress 0.09407999 
## Run 17 stress 0.09168947 
## Run 18 stress 0.09969978 
## Run 19 stress 0.09030399 
## Run 20 stress 0.0850347 
## ... Procrustes: rmse 9.25553e-05  max resid 0.0001917534 
## ... Similar to previous best
## *** Best solution repeated 3 times
# Ocean sites and mixed lakes
spresom_NMDS <- metaMDS(spresom_dist, try = 1000, parallel = 4)
## Run 0 stress 0.07160265 
## Run 1 stress 0.07393039 
## Run 2 stress 0.07176077 
## ... Procrustes: rmse 0.01169069  max resid 0.03162913 
## Run 3 stress 0.07176077 
## ... Procrustes: rmse 0.01169892  max resid 0.03161839 
## Run 4 stress 0.07393041 
## Run 5 stress 0.07160268 
## ... Procrustes: rmse 5.355886e-05  max resid 0.0001253463 
## ... Similar to previous best
## Run 6 stress 0.07160273 
## ... Procrustes: rmse 0.0001192013  max resid 0.0002838091 
## ... Similar to previous best
## Run 7 stress 0.2917866 
## Run 8 stress 0.07160271 
## ... Procrustes: rmse 0.0001094368  max resid 0.0002599732 
## ... Similar to previous best
## Run 9 stress 0.07393039 
## Run 10 stress 0.07160267 
## ... Procrustes: rmse 5.349811e-05  max resid 0.0001252844 
## ... Similar to previous best
## Run 11 stress 0.07160265 
## ... New best solution
## ... Procrustes: rmse 2.837296e-05  max resid 6.446706e-05 
## ... Similar to previous best
## Run 12 stress 0.07160266 
## ... Procrustes: rmse 5.171492e-05  max resid 0.0001234575 
## ... Similar to previous best
## Run 13 stress 0.07921479 
## Run 14 stress 0.07176076 
## ... Procrustes: rmse 0.01169529  max resid 0.03161481 
## Run 15 stress 0.07393039 
## Run 16 stress 0.07160272 
## ... Procrustes: rmse 0.0001299539  max resid 0.0002989544 
## ... Similar to previous best
## Run 17 stress 0.07237217 
## Run 18 stress 0.07393039 
## Run 19 stress 0.07160267 
## ... Procrustes: rmse 6.91039e-05  max resid 0.0001593399 
## ... Similar to previous best
## Run 20 stress 0.07393039 
## *** Best solution repeated 4 times
# Stratified lakes and ocean sites
spresso_NMDS <- metaMDS(spresso_dist, try = 1000, parallel = 4)
## Run 0 stress 0.08013059 
## Run 1 stress 0.07063396 
## ... New best solution
## ... Procrustes: rmse 0.1049003  max resid 0.2672709 
## Run 2 stress 0.08433843 
## Run 3 stress 0.07081961 
## ... Procrustes: rmse 0.01417331  max resid 0.03100685 
## Run 4 stress 0.0726393 
## Run 5 stress 0.07081976 
## ... Procrustes: rmse 0.01403765  max resid 0.03085506 
## Run 6 stress 0.07063383 
## ... New best solution
## ... Procrustes: rmse 0.0001520059  max resid 0.0004150572 
## ... Similar to previous best
## Run 7 stress 0.09109113 
## Run 8 stress 0.08433846 
## Run 9 stress 0.07081966 
## ... Procrustes: rmse 0.01431369  max resid 0.03118491 
## Run 10 stress 0.0706339 
## ... Procrustes: rmse 0.0001053492  max resid 0.0002868593 
## ... Similar to previous best
## Run 11 stress 0.08679564 
## Run 12 stress 0.09576453 
## Run 13 stress 0.0726393 
## Run 14 stress 0.07063381 
## ... New best solution
## ... Procrustes: rmse 7.4805e-05  max resid 0.0002044265 
## ... Similar to previous best
## Run 15 stress 0.08013059 
## Run 16 stress 0.07063382 
## ... Procrustes: rmse 1.246057e-05  max resid 3.471175e-05 
## ... Similar to previous best
## Run 17 stress 0.0726393 
## Run 18 stress 0.08199752 
## Run 19 stress 0.07081968 
## ... Procrustes: rmse 0.01420632  max resid 0.03108175 
## Run 20 stress 0.08199752 
## *** Best solution repeated 2 times
### Environmental
## Jaccard
# All sites 
jprese_NMDS <- metaMDS(jprese_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.07669149 
## Run 1 stress 0.07669156 
## ... Procrustes: rmse 0.0001655366  max resid 0.000291146 
## ... Similar to previous best
## Run 2 stress 0.08443197 
## Run 3 stress 0.08362753 
## Run 4 stress 0.07960657 
## Run 5 stress 0.08175695 
## Run 6 stress 0.08527041 
## Run 7 stress 0.08317339 
## Run 8 stress 0.08337137 
## Run 9 stress 0.07669154 
## ... Procrustes: rmse 0.0001166801  max resid 0.0001970816 
## ... Similar to previous best
## Run 10 stress 0.08250194 
## Run 11 stress 0.083055 
## Run 12 stress 0.08063934 
## Run 13 stress 0.08175698 
## Run 14 stress 0.08362753 
## Run 15 stress 0.0821735 
## Run 16 stress 0.08182112 
## Run 17 stress 0.08104886 
## Run 18 stress 0.08175696 
## Run 19 stress 0.07960661 
## Run 20 stress 0.07669155 
## ... Procrustes: rmse 0.000131207  max resid 0.0002669387 
## ... Similar to previous best
## Run 21 stress 0.08250187 
## Run 22 stress 0.08957518 
## Run 23 stress 0.07669159 
## ... Procrustes: rmse 0.0001975152  max resid 0.0003420702 
## ... Similar to previous best
## Run 24 stress 0.08317321 
## Run 25 stress 0.08274906 
## Run 26 stress 0.08012969 
## Run 27 stress 0.08104894 
## Run 28 stress 0.08305238 
## Run 29 stress 0.08374671 
## Run 30 stress 0.0827491 
## Run 31 stress 0.08241481 
## Run 32 stress 0.08175716 
## Run 33 stress 0.08305323 
## Run 34 stress 0.08189392 
## Run 35 stress 0.08003203 
## Run 36 stress 0.07868332 
## Run 37 stress 0.0821734 
## Run 38 stress 0.08433701 
## Run 39 stress 0.0766917 
## ... Procrustes: rmse 0.0002645492  max resid 0.0004627334 
## ... Similar to previous best
## Run 40 stress 0.07868339 
## Run 41 stress 0.08175696 
## Run 42 stress 0.08305444 
## Run 43 stress 0.08104888 
## Run 44 stress 0.08104883 
## Run 45 stress 0.08218534 
## Run 46 stress 0.08317317 
## Run 47 stress 0.08459623 
## Run 48 stress 0.08175698 
## Run 49 stress 0.08249597 
## Run 50 stress 0.07868354 
## Run 51 stress 0.08182112 
## Run 52 stress 0.08375707 
## Run 53 stress 0.08514175 
## Run 54 stress 0.07949011 
## Run 55 stress 0.08337197 
## Run 56 stress 0.08265405 
## Run 57 stress 0.08175715 
## Run 58 stress 0.08684152 
## Run 59 stress 0.07669157 
## ... Procrustes: rmse 0.0001758288  max resid 0.0003094307 
## ... Similar to previous best
## Run 60 stress 0.08175702 
## Run 61 stress 0.08097759 
## Run 62 stress 0.08842031 
## Run 63 stress 0.08470963 
## Run 64 stress 0.08012952 
## Run 65 stress 0.09036741 
## Run 66 stress 0.08243383 
## Run 67 stress 0.08477421 
## Run 68 stress 0.08249615 
## Run 69 stress 0.08360269 
## Run 70 stress 0.08003172 
## Run 71 stress 0.07731512 
## Run 72 stress 0.08012987 
## Run 73 stress 0.08265386 
## Run 74 stress 0.07669153 
## ... Procrustes: rmse 9.45236e-05  max resid 0.0001891484 
## ... Similar to previous best
## Run 75 stress 0.0826532 
## Run 76 stress 0.0928291 
## Run 77 stress 0.08241503 
## Run 78 stress 0.07669151 
## ... Procrustes: rmse 6.034291e-05  max resid 0.0001095689 
## ... Similar to previous best
## Run 79 stress 0.08175691 
## Run 80 stress 0.08217345 
## Run 81 stress 0.08210351 
## Run 82 stress 0.08233291 
## Run 83 stress 0.08362779 
## Run 84 stress 0.07949021 
## Run 85 stress 0.08252147 
## Run 86 stress 0.08459666 
## Run 87 stress 0.08421022 
## Run 88 stress 0.0800319 
## Run 89 stress 0.07669151 
## ... Procrustes: rmse 7.095621e-05  max resid 0.0001453257 
## ... Similar to previous best
## Run 90 stress 0.07868343 
## Run 91 stress 0.08957554 
## Run 92 stress 0.08305349 
## Run 93 stress 0.08249621 
## Run 94 stress 0.09091581 
## Run 95 stress 0.08459574 
## Run 96 stress 0.08104887 
## Run 97 stress 0.08252155 
## Run 98 stress 0.0818211 
## Run 99 stress 0.07951481 
## Run 100 stress 0.08433691 
## Run 101 stress 0.08305347 
## Run 102 stress 0.07669159 
## ... Procrustes: rmse 0.0001896704  max resid 0.0003302809 
## ... Similar to previous best
## Run 103 stress 0.08305304 
## Run 104 stress 0.08144884 
## Run 105 stress 0.07949009 
## Run 106 stress 0.08453226 
## Run 107 stress 0.08104925 
## Run 108 stress 0.08175692 
## Run 109 stress 0.08104921 
## Run 110 stress 0.08553074 
## Run 111 stress 0.09120166 
## Run 112 stress 0.08477427 
## Run 113 stress 0.08339573 
## Run 114 stress 0.07943331 
## Run 115 stress 0.08968613 
## Run 116 stress 0.09026388 
## Run 117 stress 0.08835157 
## Run 118 stress 0.08493126 
## Run 119 stress 0.08835197 
## Run 120 stress 0.08175694 
## Run 121 stress 0.07669171 
## ... Procrustes: rmse 0.0002683883  max resid 0.0004927777 
## ... Similar to previous best
## Run 122 stress 0.08104884 
## Run 123 stress 0.08616032 
## Run 124 stress 0.08265352 
## Run 125 stress 0.08175709 
## Run 126 stress 0.08527026 
## Run 127 stress 0.08265345 
## Run 128 stress 0.08175706 
## Run 129 stress 0.08305415 
## Run 130 stress 0.08013003 
## Run 131 stress 0.08433697 
## Run 132 stress 0.08003192 
## Run 133 stress 0.07960677 
## Run 134 stress 0.08684102 
## Run 135 stress 0.08265445 
## Run 136 stress 0.08182125 
## Run 137 stress 0.08217341 
## Run 138 stress 0.07960666 
## Run 139 stress 0.0835586 
## Run 140 stress 0.08717131 
## Run 141 stress 0.0868264 
## Run 142 stress 0.07948984 
## Run 143 stress 0.08104886 
## Run 144 stress 0.08175691 
## Run 145 stress 0.07731513 
## Run 146 stress 0.07669154 
## ... Procrustes: rmse 2.949805e-05  max resid 7.00045e-05 
## ... Similar to previous best
## Run 147 stress 0.08249615 
## Run 148 stress 0.08957574 
## Run 149 stress 0.07871773 
## Run 150 stress 0.08355841 
## Run 151 stress 0.0773153 
## Run 152 stress 0.07868347 
## Run 153 stress 0.07949042 
## Run 154 stress 0.08097752 
## Run 155 stress 0.0827499 
## Run 156 stress 0.08360259 
## Run 157 stress 0.08265444 
## Run 158 stress 0.0796068 
## Run 159 stress 0.08250124 
## Run 160 stress 0.08265359 
## Run 161 stress 0.0810492 
## Run 162 stress 0.08250111 
## Run 163 stress 0.08443293 
## Run 164 stress 0.08182114 
## Run 165 stress 0.08283551 
## Run 166 stress 0.08314416 
## Run 167 stress 0.08144912 
## Run 168 stress 0.08317345 
## Run 169 stress 0.08104883 
## Run 170 stress 0.08835173 
## Run 171 stress 0.07960659 
## Run 172 stress 0.07669151 
## ... Procrustes: rmse 8.227299e-05  max resid 0.0001457511 
## ... Similar to previous best
## Run 173 stress 0.0852703 
## Run 174 stress 0.0806394 
## Run 175 stress 0.0826535 
## Run 176 stress 0.08433706 
## Run 177 stress 0.08464764 
## Run 178 stress 0.08144819 
## Run 179 stress 0.07951476 
## Run 180 stress 0.08433705 
## Run 181 stress 0.08063928 
## Run 182 stress 0.07669154 
## ... Procrustes: rmse 0.0001021604  max resid 0.0001798692 
## ... Similar to previous best
## Run 183 stress 0.0801297 
## Run 184 stress 0.08175697 
## Run 185 stress 0.08175695 
## Run 186 stress 0.08242385 
## Run 187 stress 0.08249596 
## Run 188 stress 0.07669157 
## ... Procrustes: rmse 0.000157579  max resid 0.0002881126 
## ... Similar to previous best
## Run 189 stress 0.08249604 
## Run 190 stress 0.08249613 
## Run 191 stress 0.08013012 
## Run 192 stress 0.08175693 
## Run 193 stress 0.08283544 
## Run 194 stress 0.08433695 
## Run 195 stress 0.08175692 
## Run 196 stress 0.08375754 
## Run 197 stress 0.07871761 
## Run 198 stress 0.08421007 
## Run 199 stress 0.08471588 
## Run 200 stress 0.08485156 
## Run 201 stress 0.08362758 
## Run 202 stress 0.081757 
## Run 203 stress 0.0831439 
## Run 204 stress 0.08265399 
## Run 205 stress 0.0817569 
## Run 206 stress 0.07868355 
## Run 207 stress 0.08375709 
## Run 208 stress 0.08370356 
## Run 209 stress 0.08317321 
## Run 210 stress 0.08243381 
## Run 211 stress 0.08835162 
## Run 212 stress 0.08182111 
## Run 213 stress 0.08175694 
## Run 214 stress 0.0831443 
## Run 215 stress 0.07943377 
## Run 216 stress 0.08252158 
## Run 217 stress 0.08418578 
## Run 218 stress 0.08477426 
## Run 219 stress 0.0836028 
## Run 220 stress 0.07871725 
## Run 221 stress 0.08249606 
## Run 222 stress 0.08175694 
## Run 223 stress 0.08927472 
## Run 224 stress 0.08355858 
## Run 225 stress 0.08003187 
## Run 226 stress 0.08250153 
## Run 227 stress 0.07868337 
## Run 228 stress 0.08317377 
## Run 229 stress 0.08375712 
## Run 230 stress 0.08217351 
## Run 231 stress 0.08530153 
## Run 232 stress 0.08337131 
## Run 233 stress 0.08097758 
## Run 234 stress 0.08249617 
## Run 235 stress 0.08305375 
## Run 236 stress 0.08175703 
## Run 237 stress 0.08379892 
## Run 238 stress 0.08835132 
## Run 239 stress 0.08012966 
## Run 240 stress 0.07960674 
## Run 241 stress 0.08182126 
## Run 242 stress 0.08144906 
## Run 243 stress 0.08421011 
## Run 244 stress 0.08175706 
## Run 245 stress 0.08835149 
## Run 246 stress 0.08360271 
## Run 247 stress 0.08684108 
## Run 248 stress 0.08233216 
## Run 249 stress 0.08217359 
## Run 250 stress 0.08175724 
## Run 251 stress 0.08243394 
## Run 252 stress 0.08477463 
## Run 253 stress 0.08097743 
## Run 254 stress 0.08012947 
## Run 255 stress 0.09063352 
## Run 256 stress 0.07951466 
## Run 257 stress 0.08265475 
## Run 258 stress 0.08097745 
## Run 259 stress 0.08012962 
## Run 260 stress 0.07868346 
## Run 261 stress 0.08003197 
## Run 262 stress 0.08337155 
## Run 263 stress 0.08252135 
## Run 264 stress 0.08175691 
## Run 265 stress 0.07960663 
## Run 266 stress 0.08527042 
## Run 267 stress 0.08616034 
## Run 268 stress 0.08182121 
## Run 269 stress 0.09091558 
## Run 270 stress 0.0817571 
## Run 271 stress 0.08317326 
## Run 272 stress 0.07948979 
## Run 273 stress 0.0824339 
## Run 274 stress 0.08104914 
## Run 275 stress 0.07731522 
## Run 276 stress 0.08433702 
## Run 277 stress 0.08012944 
## Run 278 stress 0.08210361 
## Run 279 stress 0.07731522 
## Run 280 stress 0.08317325 
## Run 281 stress 0.08317325 
## Run 282 stress 0.07960661 
## Run 283 stress 0.08252119 
## Run 284 stress 0.08104909 
## Run 285 stress 0.07669169 
## ... Procrustes: rmse 0.0002721835  max resid 0.0004735134 
## ... Similar to previous best
## Run 286 stress 0.08012999 
## Run 287 stress 0.08360266 
## Run 288 stress 0.08175689 
## Run 289 stress 0.08097759 
## Run 290 stress 0.08375708 
## Run 291 stress 0.08471588 
## Run 292 stress 0.08249597 
## Run 293 stress 0.0766917 
## ... Procrustes: rmse 0.0002553485  max resid 0.000437247 
## ... Similar to previous best
## Run 294 stress 0.07868362 
## Run 295 stress 0.08252117 
## Run 296 stress 0.08305464 
## Run 297 stress 0.08477447 
## Run 298 stress 0.08360265 
## Run 299 stress 0.08175689 
## Run 300 stress 0.08265372 
## Run 301 stress 0.08217347 
## Run 302 stress 0.08362753 
## Run 303 stress 0.08252792 
## Run 304 stress 0.08252801 
## Run 305 stress 0.08530174 
## Run 306 stress 0.07669165 
## ... Procrustes: rmse 0.0002193324  max resid 0.0003810647 
## ... Similar to previous best
## Run 307 stress 0.08375714 
## Run 308 stress 0.08189383 
## Run 309 stress 0.08265437 
## Run 310 stress 0.08370311 
## Run 311 stress 0.08375723 
## Run 312 stress 0.0825214 
## Run 313 stress 0.08433699 
## Run 314 stress 0.08182123 
## Run 315 stress 0.08012969 
## Run 316 stress 0.08097755 
## Run 317 stress 0.08433687 
## Run 318 stress 0.08252122 
## Run 319 stress 0.07669174 
## ... Procrustes: rmse 0.0002979431  max resid 0.0005192628 
## ... Similar to previous best
## Run 320 stress 0.0836276 
## Run 321 stress 0.08360272 
## Run 322 stress 0.07669163 
## ... Procrustes: rmse 0.0001754755  max resid 0.0003800497 
## ... Similar to previous best
## Run 323 stress 0.08283545 
## Run 324 stress 0.08218537 
## Run 325 stress 0.0837468 
## Run 326 stress 0.08097741 
## Run 327 stress 0.08477411 
## Run 328 stress 0.08337184 
## Run 329 stress 0.079434 
## Run 330 stress 0.08433694 
## Run 331 stress 0.08433693 
## Run 332 stress 0.08329757 
## Run 333 stress 0.08252133 
## Run 334 stress 0.07868379 
## Run 335 stress 0.08265435 
## Run 336 stress 0.08335413 
## Run 337 stress 0.08104914 
## Run 338 stress 0.07669178 
## ... Procrustes: rmse 0.0003296265  max resid 0.0005730505 
## ... Similar to previous best
## Run 339 stress 0.08485136 
## Run 340 stress 0.08252142 
## Run 341 stress 0.08003192 
## Run 342 stress 0.08459602 
## Run 343 stress 0.07948958 
## Run 344 stress 0.08283575 
## Run 345 stress 0.08097762 
## Run 346 stress 0.08375713 
## Run 347 stress 0.07943358 
## Run 348 stress 0.08252124 
## Run 349 stress 0.07951468 
## Run 350 stress 0.08556564 
## Run 351 stress 0.09022662 
## Run 352 stress 0.08265416 
## Run 353 stress 0.07669157 
## ... Procrustes: rmse 0.0001064941  max resid 0.0001840508 
## ... Similar to previous best
## Run 354 stress 0.08317355 
## Run 355 stress 0.08097774 
## Run 356 stress 0.08305491 
## Run 357 stress 0.08144925 
## Run 358 stress 0.08012969 
## Run 359 stress 0.09028543 
## Run 360 stress 0.08355806 
## Run 361 stress 0.08682648 
## Run 362 stress 0.08243365 
## Run 363 stress 0.07949007 
## Run 364 stress 0.0786835 
## Run 365 stress 0.08375716 
## Run 366 stress 0.07669151 
## ... Procrustes: rmse 5.470458e-05  max resid 0.0001252378 
## ... Similar to previous best
## Run 367 stress 0.0786838 
## Run 368 stress 0.08305544 
## Run 369 stress 0.08283543 
## Run 370 stress 0.08265484 
## Run 371 stress 0.07868369 
## Run 372 stress 0.08252126 
## Run 373 stress 0.08012994 
## Run 374 stress 0.08249625 
## Run 375 stress 0.08003181 
## Run 376 stress 0.08477424 
## Run 377 stress 0.09070288 
## Run 378 stress 0.08097762 
## Run 379 stress 0.08012951 
## Run 380 stress 0.07731535 
## Run 381 stress 0.08182112 
## Run 382 stress 0.08682653 
## Run 383 stress 0.08175693 
## Run 384 stress 0.08233253 
## Run 385 stress 0.0766915 
## ... Procrustes: rmse 1.981859e-05  max resid 3.829279e-05 
## ... Similar to previous best
## Run 386 stress 0.08182108 
## Run 387 stress 0.08375708 
## Run 388 stress 0.08182116 
## Run 389 stress 0.08003185 
## Run 390 stress 0.08097751 
## Run 391 stress 0.08233196 
## Run 392 stress 0.08218523 
## Run 393 stress 0.07960662 
## Run 394 stress 0.08485141 
## Run 395 stress 0.07871746 
## Run 396 stress 0.08360257 
## Run 397 stress 0.07669157 
## ... Procrustes: rmse 0.0001722046  max resid 0.0002992506 
## ... Similar to previous best
## Run 398 stress 0.08097764 
## Run 399 stress 0.07669158 
## ... Procrustes: rmse 0.0001778122  max resid 0.0003429679 
## ... Similar to previous best
## Run 400 stress 0.08249608 
## Run 401 stress 0.0825019 
## Run 402 stress 0.08241785 
## Run 403 stress 0.08182127 
## Run 404 stress 0.08175691 
## Run 405 stress 0.08250151 
## Run 406 stress 0.08175709 
## Run 407 stress 0.08433704 
## Run 408 stress 0.08370295 
## Run 409 stress 0.08582934 
## Run 410 stress 0.07669171 
## ... Procrustes: rmse 0.0002657692  max resid 0.0004550416 
## ... Similar to previous best
## Run 411 stress 0.08530184 
## Run 412 stress 0.07948979 
## Run 413 stress 0.07960687 
## Run 414 stress 0.08097775 
## Run 415 stress 0.08553063 
## Run 416 stress 0.08305442 
## Run 417 stress 0.08421029 
## Run 418 stress 0.07960681 
## Run 419 stress 0.08337118 
## Run 420 stress 0.08370335 
## Run 421 stress 0.082496 
## Run 422 stress 0.08433687 
## Run 423 stress 0.08553058 
## Run 424 stress 0.0796066 
## Run 425 stress 0.07731531 
## Run 426 stress 0.08104884 
## Run 427 stress 0.08104935 
## Run 428 stress 0.08182117 
## Run 429 stress 0.0854826 
## Run 430 stress 0.07669186 
## ... Procrustes: rmse 0.0003542539  max resid 0.0006036823 
## ... Similar to previous best
## Run 431 stress 0.08375712 
## Run 432 stress 0.08175689 
## Run 433 stress 0.09063299 
## Run 434 stress 0.08887988 
## Run 435 stress 0.08527035 
## Run 436 stress 0.08097754 
## Run 437 stress 0.08217343 
## Run 438 stress 0.08362753 
## Run 439 stress 0.08175709 
## Run 440 stress 0.08375761 
## Run 441 stress 0.08314378 
## Run 442 stress 0.08250115 
## Run 443 stress 0.07868363 
## Run 444 stress 0.08182119 
## Run 445 stress 0.07669163 
## ... Procrustes: rmse 0.0002276879  max resid 0.0003947814 
## ... Similar to previous best
## Run 446 stress 0.08692112 
## Run 447 stress 0.08337155 
## Run 448 stress 0.08464777 
## Run 449 stress 0.07871752 
## Run 450 stress 0.08243385 
## Run 451 stress 0.07949006 
## Run 452 stress 0.08684139 
## Run 453 stress 0.07948989 
## Run 454 stress 0.08657654 
## Run 455 stress 0.08314404 
## Run 456 stress 0.08337113 
## Run 457 stress 0.08835149 
## Run 458 stress 0.08317378 
## Run 459 stress 0.08355816 
## Run 460 stress 0.07871725 
## Run 461 stress 0.07669174 
## ... Procrustes: rmse 0.0003068139  max resid 0.000536659 
## ... Similar to previous best
## Run 462 stress 0.08104884 
## Run 463 stress 0.08175691 
## Run 464 stress 0.08583981 
## Run 465 stress 0.08314431 
## Run 466 stress 0.08339629 
## Run 467 stress 0.08175692 
## Run 468 stress 0.0892906 
## Run 469 stress 0.08453187 
## Run 470 stress 0.08003194 
## Run 471 stress 0.0842272 
## Run 472 stress 0.08464822 
## Run 473 stress 0.08175711 
## Run 474 stress 0.08104885 
## Run 475 stress 0.08433687 
## Run 476 stress 0.08379855 
## Run 477 stress 0.08003178 
## Run 478 stress 0.08217365 
## Run 479 stress 0.08464825 
## Run 480 stress 0.08175699 
## Run 481 stress 0.0836026 
## Run 482 stress 0.08243391 
## Run 483 stress 0.08249604 
## Run 484 stress 0.08464778 
## Run 485 stress 0.08957605 
## Run 486 stress 0.07948989 
## Run 487 stress 0.08433692 
## Run 488 stress 0.07948996 
## Run 489 stress 0.08433696 
## Run 490 stress 0.07731512 
## Run 491 stress 0.08265473 
## Run 492 stress 0.0817571 
## Run 493 stress 0.07731523 
## Run 494 stress 0.08317354 
## Run 495 stress 0.08097757 
## Run 496 stress 0.08097768 
## Run 497 stress 0.08422734 
## Run 498 stress 0.07669161 
## ... Procrustes: rmse 0.0002168708  max resid 0.0003761869 
## ... Similar to previous best
## Run 499 stress 0.07948971 
## Run 500 stress 0.08175689 
## *** Best solution repeated 31 times
# Mixed and stratified lakes
jpresems_NMDS <- metaMDS(jpresems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08503614 
## Run 1 stress 0.08440255 
## ... New best solution
## ... Procrustes: rmse 0.01442995  max resid 0.04296885 
## Run 2 stress 0.09465904 
## Run 3 stress 0.09400524 
## Run 4 stress 0.09286084 
## Run 5 stress 0.08440253 
## ... New best solution
## ... Procrustes: rmse 3.768082e-05  max resid 6.908018e-05 
## ... Similar to previous best
## Run 6 stress 0.09030404 
## Run 7 stress 0.09030404 
## Run 8 stress 0.09268388 
## Run 9 stress 0.09321398 
## Run 10 stress 0.09286086 
## Run 11 stress 0.09030399 
## Run 12 stress 0.09465905 
## Run 13 stress 0.09539197 
## Run 14 stress 0.0937426 
## Run 15 stress 0.09286085 
## Run 16 stress 0.09308955 
## Run 17 stress 0.09168942 
## Run 18 stress 0.09408014 
## Run 19 stress 0.0850356 
## Run 20 stress 0.08773476 
## Run 21 stress 0.09337301 
## Run 22 stress 0.08503501 
## Run 23 stress 0.09030396 
## Run 24 stress 0.09286083 
## Run 25 stress 0.08773467 
## Run 26 stress 0.09465904 
## Run 27 stress 0.08973886 
## Run 28 stress 0.09407984 
## Run 29 stress 0.0844026 
## ... Procrustes: rmse 0.0001034805  max resid 0.0002109211 
## ... Similar to previous best
## Run 30 stress 0.09539194 
## Run 31 stress 0.08503467 
## Run 32 stress 0.08503605 
## Run 33 stress 0.09159085 
## Run 34 stress 0.09168956 
## Run 35 stress 0.09286087 
## Run 36 stress 0.09407971 
## Run 37 stress 0.2347241 
## Run 38 stress 0.09030406 
## Run 39 stress 0.09030404 
## Run 40 stress 0.08773467 
## Run 41 stress 0.08973864 
## Run 42 stress 0.09374218 
## Run 43 stress 0.09416144 
## Run 44 stress 0.09030397 
## Run 45 stress 0.1026215 
## Run 46 stress 0.09168954 
## Run 47 stress 0.09145321 
## Run 48 stress 0.08503525 
## Run 49 stress 0.1038041 
## Run 50 stress 0.09030408 
## Run 51 stress 0.08973879 
## Run 52 stress 0.09159083 
## Run 53 stress 0.09590868 
## Run 54 stress 0.09416131 
## Run 55 stress 0.09168947 
## Run 56 stress 0.09308962 
## Run 57 stress 0.08503635 
## Run 58 stress 0.08503684 
## Run 59 stress 0.2725525 
## Run 60 stress 0.09030402 
## Run 61 stress 0.09380577 
## Run 62 stress 0.0932175 
## Run 63 stress 0.09268404 
## Run 64 stress 0.09145321 
## Run 65 stress 0.08773489 
## Run 66 stress 0.0914533 
## Run 67 stress 0.100461 
## Run 68 stress 0.08973863 
## Run 69 stress 0.09969991 
## Run 70 stress 0.09145324 
## Run 71 stress 0.08503545 
## Run 72 stress 0.09030408 
## Run 73 stress 0.105285 
## Run 74 stress 0.09403423 
## Run 75 stress 0.08503506 
## Run 76 stress 0.09407972 
## Run 77 stress 0.09308975 
## Run 78 stress 0.08440256 
## ... Procrustes: rmse 4.582874e-05  max resid 0.0001031636 
## ... Similar to previous best
## Run 79 stress 0.09539197 
## Run 80 stress 0.09977534 
## Run 81 stress 0.09321851 
## Run 82 stress 0.09159098 
## Run 83 stress 0.09407984 
## Run 84 stress 0.0940798 
## Run 85 stress 0.09159085 
## Run 86 stress 0.08503495 
## Run 87 stress 0.09721204 
## Run 88 stress 0.0946591 
## Run 89 stress 0.09145332 
## Run 90 stress 0.09268403 
## Run 91 stress 0.08440263 
## ... Procrustes: rmse 0.0001223883  max resid 0.0002515246 
## ... Similar to previous best
## Run 92 stress 0.09535491 
## Run 93 stress 0.1038049 
## Run 94 stress 0.09286084 
## Run 95 stress 0.09145323 
## Run 96 stress 0.09030401 
## Run 97 stress 0.0897387 
## Run 98 stress 0.09590846 
## Run 99 stress 0.09539194 
## Run 100 stress 0.09969972 
## Run 101 stress 0.08773468 
## Run 102 stress 0.09268362 
## Run 103 stress 0.09445479 
## Run 104 stress 0.08440252 
## ... New best solution
## ... Procrustes: rmse 4.532211e-05  max resid 0.0001458128 
## ... Similar to previous best
## Run 105 stress 0.09407981 
## Run 106 stress 0.0903041 
## Run 107 stress 0.08973878 
## Run 108 stress 0.09969968 
## Run 109 stress 0.09465908 
## Run 110 stress 0.09145321 
## Run 111 stress 0.0930898 
## Run 112 stress 0.09145326 
## Run 113 stress 0.09030397 
## Run 114 stress 0.09465907 
## Run 115 stress 0.08773466 
## Run 116 stress 0.09308969 
## Run 117 stress 0.09416147 
## Run 118 stress 0.09030395 
## Run 119 stress 0.08503461 
## Run 120 stress 0.09539196 
## Run 121 stress 0.09337232 
## Run 122 stress 0.08503658 
## Run 123 stress 0.08440251 
## ... New best solution
## ... Procrustes: rmse 5.416084e-05  max resid 0.0001082743 
## ... Similar to previous best
## Run 124 stress 0.09268356 
## Run 125 stress 0.08973876 
## Run 126 stress 0.08503514 
## Run 127 stress 0.0930895 
## Run 128 stress 0.09321753 
## Run 129 stress 0.08503648 
## Run 130 stress 0.09268336 
## Run 131 stress 0.09308947 
## Run 132 stress 0.09268408 
## Run 133 stress 0.09286084 
## Run 134 stress 0.08973893 
## Run 135 stress 0.09030413 
## Run 136 stress 0.08440258 
## ... Procrustes: rmse 0.0001772799  max resid 0.0003472425 
## ... Similar to previous best
## Run 137 stress 0.09407391 
## Run 138 stress 0.09407987 
## Run 139 stress 0.08440263 
## ... Procrustes: rmse 0.0001980797  max resid 0.0003700055 
## ... Similar to previous best
## Run 140 stress 0.09159085 
## Run 141 stress 0.08503506 
## Run 142 stress 0.09400541 
## Run 143 stress 0.09168951 
## Run 144 stress 0.09030394 
## Run 145 stress 0.08503502 
## Run 146 stress 0.09268367 
## Run 147 stress 0.09159105 
## Run 148 stress 0.08503669 
## Run 149 stress 0.08973889 
## Run 150 stress 0.09268355 
## Run 151 stress 0.09337259 
## Run 152 stress 0.08503623 
## Run 153 stress 0.08973864 
## Run 154 stress 0.0926841 
## Run 155 stress 0.1019597 
## Run 156 stress 0.0940798 
## Run 157 stress 0.1038041 
## Run 158 stress 0.09400521 
## Run 159 stress 0.09286084 
## Run 160 stress 0.08440257 
## ... Procrustes: rmse 0.0001285099  max resid 0.0002385532 
## ... Similar to previous best
## Run 161 stress 0.09374177 
## Run 162 stress 0.09030398 
## Run 163 stress 0.09286083 
## Run 164 stress 0.09407966 
## Run 165 stress 0.0944548 
## Run 166 stress 0.0903041 
## Run 167 stress 0.08440265 
## ... Procrustes: rmse 0.0001931355  max resid 0.0003542269 
## ... Similar to previous best
## Run 168 stress 0.09969973 
## Run 169 stress 0.09308948 
## Run 170 stress 0.08773487 
## Run 171 stress 0.08440256 
## ... Procrustes: rmse 0.000124144  max resid 0.0002322219 
## ... Similar to previous best
## Run 172 stress 0.08973876 
## Run 173 stress 0.09030394 
## Run 174 stress 0.090304 
## Run 175 stress 0.08773467 
## Run 176 stress 0.09286085 
## Run 177 stress 0.08440263 
## ... Procrustes: rmse 0.0001934751  max resid 0.0003562264 
## ... Similar to previous best
## Run 178 stress 0.08973865 
## Run 179 stress 0.09465908 
## Run 180 stress 0.09380599 
## Run 181 stress 0.09407999 
## Run 182 stress 0.09465909 
## Run 183 stress 0.09465906 
## Run 184 stress 0.08973874 
## Run 185 stress 0.09030407 
## Run 186 stress 0.09400523 
## Run 187 stress 0.09416144 
## Run 188 stress 0.09145326 
## Run 189 stress 0.09416131 
## Run 190 stress 0.08773473 
## Run 191 stress 0.09030393 
## Run 192 stress 0.09268372 
## Run 193 stress 0.09159084 
## Run 194 stress 0.09407993 
## Run 195 stress 0.09721202 
## Run 196 stress 0.09539194 
## Run 197 stress 0.09145325 
## Run 198 stress 0.08503459 
## Run 199 stress 0.08973865 
## Run 200 stress 0.09447299 
## Run 201 stress 0.0850346 
## Run 202 stress 0.09590916 
## Run 203 stress 0.0946443 
## Run 204 stress 0.09168928 
## Run 205 stress 0.08773466 
## Run 206 stress 0.09145334 
## Run 207 stress 0.09030406 
## Run 208 stress 0.09465904 
## Run 209 stress 0.08973865 
## Run 210 stress 0.08773478 
## Run 211 stress 0.09465908 
## Run 212 stress 0.08440253 
## ... Procrustes: rmse 7.561595e-05  max resid 0.0001436028 
## ... Similar to previous best
## Run 213 stress 0.09337256 
## Run 214 stress 0.09145331 
## Run 215 stress 0.08973862 
## Run 216 stress 0.09374278 
## Run 217 stress 0.09407967 
## Run 218 stress 0.09030406 
## Run 219 stress 0.09760832 
## Run 220 stress 0.0940436 
## Run 221 stress 0.08973867 
## Run 222 stress 0.09400521 
## Run 223 stress 0.09969978 
## Run 224 stress 0.09380578 
## Run 225 stress 0.09168946 
## Run 226 stress 0.09464501 
## Run 227 stress 0.09145322 
## Run 228 stress 0.08973881 
## Run 229 stress 0.09408015 
## Run 230 stress 0.08503514 
## Run 231 stress 0.09403411 
## Run 232 stress 0.09404378 
## Run 233 stress 0.09590484 
## Run 234 stress 0.09400543 
## Run 235 stress 0.09445481 
## Run 236 stress 0.08440252 
## ... Procrustes: rmse 5.564186e-05  max resid 0.000128289 
## ... Similar to previous best
## Run 237 stress 0.09308958 
## Run 238 stress 0.09286094 
## Run 239 stress 0.09168953 
## Run 240 stress 0.0940801 
## Run 241 stress 0.09408004 
## Run 242 stress 0.08440251 
## ... Procrustes: rmse 4.72309e-05  max resid 8.84036e-05 
## ... Similar to previous best
## Run 243 stress 0.09308951 
## Run 244 stress 0.09590499 
## Run 245 stress 0.09465906 
## Run 246 stress 0.08440253 
## ... Procrustes: rmse 8.55754e-05  max resid 0.0001681259 
## ... Similar to previous best
## Run 247 stress 0.09159095 
## Run 248 stress 0.09374308 
## Run 249 stress 0.09407965 
## Run 250 stress 0.09168935 
## Run 251 stress 0.09145328 
## Run 252 stress 0.08973862 
## Run 253 stress 0.09380576 
## Run 254 stress 0.09286083 
## Run 255 stress 0.09337274 
## Run 256 stress 0.09159087 
## Run 257 stress 0.09464493 
## Run 258 stress 0.09268374 
## Run 259 stress 0.09145332 
## Run 260 stress 0.09969992 
## Run 261 stress 0.08503513 
## Run 262 stress 0.09535514 
## Run 263 stress 0.09416146 
## Run 264 stress 0.09030401 
## Run 265 stress 0.09539192 
## Run 266 stress 0.2572343 
## Run 267 stress 0.09381844 
## Run 268 stress 0.09445472 
## Run 269 stress 0.09445469 
## Run 270 stress 0.08973891 
## Run 271 stress 0.09159086 
## Run 272 stress 0.103804 
## Run 273 stress 0.08503485 
## Run 274 stress 0.08773476 
## Run 275 stress 0.09400527 
## Run 276 stress 0.09030393 
## Run 277 stress 0.1038045 
## Run 278 stress 0.09168962 
## Run 279 stress 0.09268381 
## Run 280 stress 0.09969967 
## Run 281 stress 0.09145322 
## Run 282 stress 0.08503657 
## Run 283 stress 0.08503487 
## Run 284 stress 0.09465905 
## Run 285 stress 0.0940797 
## Run 286 stress 0.09168947 
## Run 287 stress 0.08503498 
## Run 288 stress 0.09447301 
## Run 289 stress 0.09760815 
## Run 290 stress 0.09159088 
## Run 291 stress 0.08773477 
## Run 292 stress 0.09286083 
## Run 293 stress 0.09030396 
## Run 294 stress 0.09159087 
## Run 295 stress 0.09403416 
## Run 296 stress 0.09407975 
## Run 297 stress 0.0850366 
## Run 298 stress 0.08503483 
## Run 299 stress 0.08440253 
## ... Procrustes: rmse 7.684902e-05  max resid 0.0001409014 
## ... Similar to previous best
## Run 300 stress 0.08973869 
## Run 301 stress 0.08973862 
## Run 302 stress 0.09760836 
## Run 303 stress 0.09286085 
## Run 304 stress 0.09721196 
## Run 305 stress 0.08440252 
## ... Procrustes: rmse 4.179412e-05  max resid 7.872746e-05 
## ... Similar to previous best
## Run 306 stress 0.08973863 
## Run 307 stress 0.09030406 
## Run 308 stress 0.08440259 
## ... Procrustes: rmse 0.0001596529  max resid 0.0003152628 
## ... Similar to previous best
## Run 309 stress 0.08773489 
## Run 310 stress 0.09308973 
## Run 311 stress 0.08773484 
## Run 312 stress 0.08773483 
## Run 313 stress 0.09159086 
## Run 314 stress 0.0933723 
## Run 315 stress 0.09416144 
## Run 316 stress 0.09465908 
## Run 317 stress 0.09030394 
## Run 318 stress 0.09407988 
## Run 319 stress 0.09030403 
## Run 320 stress 0.0959061 
## Run 321 stress 0.0940801 
## Run 322 stress 0.1038036 
## Run 323 stress 0.09465904 
## Run 324 stress 0.09337233 
## Run 325 stress 0.1052849 
## Run 326 stress 0.09407995 
## Run 327 stress 0.08503468 
## Run 328 stress 0.09669899 
## Run 329 stress 0.09403399 
## Run 330 stress 0.09030393 
## Run 331 stress 0.0926838 
## Run 332 stress 0.08773476 
## Run 333 stress 0.09374341 
## Run 334 stress 0.09168928 
## Run 335 stress 0.08503611 
## Run 336 stress 0.2767929 
## Run 337 stress 0.09417902 
## Run 338 stress 0.08503609 
## Run 339 stress 0.09400522 
## Run 340 stress 0.09380577 
## Run 341 stress 0.08440253 
## ... Procrustes: rmse 0.0001120124  max resid 0.0002136385 
## ... Similar to previous best
## Run 342 stress 0.08503502 
## Run 343 stress 0.09168933 
## Run 344 stress 0.09308953 
## Run 345 stress 0.09381851 
## Run 346 stress 0.1038042 
## Run 347 stress 0.09669857 
## Run 348 stress 0.09535455 
## Run 349 stress 0.09380581 
## Run 350 stress 0.09407991 
## Run 351 stress 0.09760822 
## Run 352 stress 0.09407132 
## Run 353 stress 0.09308962 
## Run 354 stress 0.09407966 
## Run 355 stress 0.08503632 
## Run 356 stress 0.09286087 
## Run 357 stress 0.08440253 
## ... Procrustes: rmse 8.052322e-05  max resid 0.0001549755 
## ... Similar to previous best
## Run 358 stress 0.08440254 
## ... Procrustes: rmse 7.599119e-05  max resid 0.0001516282 
## ... Similar to previous best
## Run 359 stress 0.09407982 
## Run 360 stress 0.09374262 
## Run 361 stress 0.09286094 
## Run 362 stress 0.08503511 
## Run 363 stress 0.08773473 
## Run 364 stress 0.0940797 
## Run 365 stress 0.08440251 
## ... Procrustes: rmse 3.314749e-05  max resid 6.205514e-05 
## ... Similar to previous best
## Run 366 stress 0.0915909 
## Run 367 stress 0.2793244 
## Run 368 stress 0.09416142 
## Run 369 stress 0.09268345 
## Run 370 stress 0.09308946 
## Run 371 stress 0.09168961 
## Run 372 stress 0.09407986 
## Run 373 stress 0.09030395 
## Run 374 stress 0.0937432 
## Run 375 stress 0.09030393 
## Run 376 stress 0.09969983 
## Run 377 stress 0.09268423 
## Run 378 stress 0.09030399 
## Run 379 stress 0.08503636 
## Run 380 stress 0.09337272 
## Run 381 stress 0.09268363 
## Run 382 stress 0.08973871 
## Run 383 stress 0.0930895 
## Run 384 stress 0.09145336 
## Run 385 stress 0.2531478 
## Run 386 stress 0.09030402 
## Run 387 stress 0.08503488 
## Run 388 stress 0.08973891 
## Run 389 stress 0.08773468 
## Run 390 stress 0.09407977 
## Run 391 stress 0.09159088 
## Run 392 stress 0.09407392 
## Run 393 stress 0.09381845 
## Run 394 stress 0.09400519 
## Run 395 stress 0.09374325 
## Run 396 stress 0.08503614 
## Run 397 stress 0.09590904 
## Run 398 stress 0.09969967 
## Run 399 stress 0.0933728 
## Run 400 stress 0.08503511 
## Run 401 stress 0.0938185 
## Run 402 stress 0.09969961 
## Run 403 stress 0.09374276 
## Run 404 stress 0.1084719 
## Run 405 stress 0.09268344 
## Run 406 stress 0.08503456 
## Run 407 stress 0.08440257 
## ... Procrustes: rmse 0.0001357901  max resid 0.0002865257 
## ... Similar to previous best
## Run 408 stress 0.09407471 
## Run 409 stress 0.09407971 
## Run 410 stress 0.08773471 
## Run 411 stress 0.09308977 
## Run 412 stress 0.09445474 
## Run 413 stress 0.08440251 
## ... Procrustes: rmse 3.274066e-05  max resid 6.186778e-05 
## ... Similar to previous best
## Run 414 stress 0.1072865 
## Run 415 stress 0.09416143 
## Run 416 stress 0.08973863 
## Run 417 stress 0.09268418 
## Run 418 stress 0.08973882 
## Run 419 stress 0.09407991 
## Run 420 stress 0.09407977 
## Run 421 stress 0.09539211 
## Run 422 stress 0.08973879 
## Run 423 stress 0.09539194 
## Run 424 stress 0.09374348 
## Run 425 stress 0.08973865 
## Run 426 stress 0.09400528 
## Run 427 stress 0.09590908 
## Run 428 stress 0.09159085 
## Run 429 stress 0.0953921 
## Run 430 stress 0.09447306 
## Run 431 stress 0.09969983 
## Run 432 stress 0.09159093 
## Run 433 stress 0.09030402 
## Run 434 stress 0.09407964 
## Run 435 stress 0.09030398 
## Run 436 stress 0.09465906 
## Run 437 stress 0.094644 
## Run 438 stress 0.09030393 
## Run 439 stress 0.08503516 
## Run 440 stress 0.0933726 
## Run 441 stress 0.08503479 
## Run 442 stress 0.09159095 
## Run 443 stress 0.09268389 
## Run 444 stress 0.09408016 
## Run 445 stress 0.08440251 
## ... Procrustes: rmse 3.869244e-05  max resid 7.587639e-05 
## ... Similar to previous best
## Run 446 stress 0.09168927 
## Run 447 stress 0.09159085 
## Run 448 stress 0.09030409 
## Run 449 stress 0.09407995 
## Run 450 stress 0.09539192 
## Run 451 stress 0.0877347 
## Run 452 stress 0.09374208 
## Run 453 stress 0.08440259 
## ... Procrustes: rmse 0.0001577305  max resid 0.0002956304 
## ... Similar to previous best
## Run 454 stress 0.08973886 
## Run 455 stress 0.09030396 
## Run 456 stress 0.08440257 
## ... Procrustes: rmse 0.0001242551  max resid 0.000232674 
## ... Similar to previous best
## Run 457 stress 0.09407975 
## Run 458 stress 0.09969986 
## Run 459 stress 0.08973864 
## Run 460 stress 0.09286087 
## Run 461 stress 0.09030393 
## Run 462 stress 0.09268354 
## Run 463 stress 0.09159084 
## Run 464 stress 0.09407985 
## Run 465 stress 0.08773477 
## Run 466 stress 0.09030393 
## Run 467 stress 0.09030395 
## Run 468 stress 0.08440251 
## ... Procrustes: rmse 1.885136e-05  max resid 3.269474e-05 
## ... Similar to previous best
## Run 469 stress 0.08973882 
## Run 470 stress 0.08773466 
## Run 471 stress 0.09407972 
## Run 472 stress 0.09308987 
## Run 473 stress 0.08440255 
## ... Procrustes: rmse 0.0001125257  max resid 0.0002353935 
## ... Similar to previous best
## Run 474 stress 0.1006349 
## Run 475 stress 0.0933731 
## Run 476 stress 0.09380575 
## Run 477 stress 0.09416149 
## Run 478 stress 0.09374331 
## Run 479 stress 0.08973868 
## Run 480 stress 0.09539193 
## Run 481 stress 0.08503479 
## Run 482 stress 0.08503563 
## Run 483 stress 0.08503515 
## Run 484 stress 0.09447298 
## Run 485 stress 0.08973882 
## Run 486 stress 0.09159083 
## Run 487 stress 0.09168958 
## Run 488 stress 0.1038037 
## Run 489 stress 0.08773476 
## Run 490 stress 0.09030393 
## Run 491 stress 0.09168951 
## Run 492 stress 0.08440254 
## ... Procrustes: rmse 0.0001198362  max resid 0.0002357284 
## ... Similar to previous best
## Run 493 stress 0.08503471 
## Run 494 stress 0.08503482 
## Run 495 stress 0.09969977 
## Run 496 stress 0.09030399 
## Run 497 stress 0.09590566 
## Run 498 stress 0.09760814 
## Run 499 stress 0.09403397 
## Run 500 stress 0.09168939 
## *** Best solution repeated 26 times
# Ocean sites and mixed lakes
jpreseom_NMDS <- metaMDS(jpreseom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.06623458 
## Run 1 stress 0.06477886 
## ... New best solution
## ... Procrustes: rmse 0.151836  max resid 0.2644403 
## Run 2 stress 0.07411943 
## Run 3 stress 0.07411938 
## Run 4 stress 0.07411945 
## Run 5 stress 0.08226183 
## Run 6 stress 0.07166978 
## Run 7 stress 0.06477849 
## ... New best solution
## ... Procrustes: rmse 0.0003058698  max resid 0.0005139809 
## ... Similar to previous best
## Run 8 stress 0.07166968 
## Run 9 stress 0.06623457 
## Run 10 stress 0.06477889 
## ... Procrustes: rmse 0.001699702  max resid 0.002864461 
## ... Similar to previous best
## Run 11 stress 0.06477851 
## ... Procrustes: rmse 2.311417e-05  max resid 3.863836e-05 
## ... Similar to previous best
## Run 12 stress 0.06623461 
## Run 13 stress 0.06123361 
## ... New best solution
## ... Procrustes: rmse 0.08982586  max resid 0.2166894 
## Run 14 stress 0.06124505 
## ... Procrustes: rmse 0.0151004  max resid 0.04181963 
## Run 15 stress 0.06623457 
## Run 16 stress 0.07411938 
## Run 17 stress 0.3271654 
## Run 18 stress 0.0741194 
## Run 19 stress 0.07411939 
## Run 20 stress 0.08226156 
## Run 21 stress 0.0612449 
## ... Procrustes: rmse 0.01493943  max resid 0.04138632 
## Run 22 stress 0.07166968 
## Run 23 stress 0.07411952 
## Run 24 stress 0.06623457 
## Run 25 stress 0.06124486 
## ... Procrustes: rmse 0.01478484  max resid 0.04096909 
## Run 26 stress 0.0716697 
## Run 27 stress 0.07411948 
## Run 28 stress 0.0662346 
## Run 29 stress 0.06124515 
## ... Procrustes: rmse 0.01516737  max resid 0.04199926 
## Run 30 stress 0.09093895 
## Run 31 stress 0.06623459 
## Run 32 stress 0.07411939 
## Run 33 stress 0.06124523 
## ... Procrustes: rmse 0.01522385  max resid 0.04215056 
## Run 34 stress 0.2345379 
## Run 35 stress 0.06123362 
## ... Procrustes: rmse 6.407176e-05  max resid 7.827092e-05 
## ... Similar to previous best
## Run 36 stress 0.06477858 
## Run 37 stress 0.3013217 
## Run 38 stress 0.06124509 
## ... Procrustes: rmse 0.01516025  max resid 0.0419771 
## Run 39 stress 0.06477979 
## Run 40 stress 0.06124497 
## ... Procrustes: rmse 0.01504938  max resid 0.04168094 
## Run 41 stress 0.06124497 
## ... Procrustes: rmse 0.01504566  max resid 0.0416703 
## Run 42 stress 0.06477916 
## Run 43 stress 0.06124515 
## ... Procrustes: rmse 0.01513569  max resid 0.04190823 
## Run 44 stress 0.06478017 
## Run 45 stress 0.0647787 
## Run 46 stress 0.06477947 
## Run 47 stress 0.06123361 
## ... Procrustes: rmse 5.246123e-05  max resid 6.504729e-05 
## ... Similar to previous best
## Run 48 stress 0.07166968 
## Run 49 stress 0.07166979 
## Run 50 stress 0.07166989 
## Run 51 stress 0.06623457 
## Run 52 stress 0.07166978 
## Run 53 stress 0.06623459 
## Run 54 stress 0.07166964 
## Run 55 stress 0.06477842 
## Run 56 stress 0.06623459 
## Run 57 stress 0.06124501 
## ... Procrustes: rmse 0.01508659  max resid 0.0417797 
## Run 58 stress 0.07166983 
## Run 59 stress 0.06123364 
## ... Procrustes: rmse 9.770767e-05  max resid 0.0001365167 
## ... Similar to previous best
## Run 60 stress 0.06623457 
## Run 61 stress 0.3271668 
## Run 62 stress 0.07411942 
## Run 63 stress 0.06477961 
## Run 64 stress 0.06477879 
## Run 65 stress 0.07411938 
## Run 66 stress 0.08226162 
## Run 67 stress 0.07411949 
## Run 68 stress 0.3275394 
## Run 69 stress 0.07166971 
## Run 70 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 9.170066e-06  max resid 1.881024e-05 
## ... Similar to previous best
## Run 71 stress 0.06623463 
## Run 72 stress 0.06123361 
## ... Procrustes: rmse 1.014284e-05  max resid 2.321901e-05 
## ... Similar to previous best
## Run 73 stress 0.06623461 
## Run 74 stress 0.07411943 
## Run 75 stress 0.06623459 
## Run 76 stress 0.07166968 
## Run 77 stress 0.07411939 
## Run 78 stress 0.08226171 
## Run 79 stress 0.06124494 
## ... Procrustes: rmse 0.01453098  max resid 0.04029075 
## Run 80 stress 0.07411945 
## Run 81 stress 0.0662346 
## Run 82 stress 0.06124492 
## ... Procrustes: rmse 0.01497043  max resid 0.04146975 
## Run 83 stress 0.07411944 
## Run 84 stress 0.06623458 
## Run 85 stress 0.2629205 
## Run 86 stress 0.2362366 
## Run 87 stress 0.06477865 
## Run 88 stress 0.07166964 
## Run 89 stress 0.07411941 
## Run 90 stress 0.06477837 
## Run 91 stress 0.0716697 
## Run 92 stress 0.07166975 
## Run 93 stress 0.07411945 
## Run 94 stress 0.06623461 
## Run 95 stress 0.08226163 
## Run 96 stress 0.06124486 
## ... Procrustes: rmse 0.01474263  max resid 0.04085883 
## Run 97 stress 0.07411939 
## Run 98 stress 0.06124529 
## ... Procrustes: rmse 0.01528903  max resid 0.04232235 
## Run 99 stress 0.06124522 
## ... Procrustes: rmse 0.01427872  max resid 0.03961298 
## Run 100 stress 0.06477954 
## Run 101 stress 0.06124489 
## ... Procrustes: rmse 0.01491644  max resid 0.04132468 
## Run 102 stress 0.07411943 
## Run 103 stress 0.07411941 
## Run 104 stress 0.07166969 
## Run 105 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 1.694264e-05  max resid 2.838339e-05 
## ... Similar to previous best
## Run 106 stress 0.06623461 
## Run 107 stress 0.06623459 
## Run 108 stress 0.08226159 
## Run 109 stress 0.07411952 
## Run 110 stress 0.0741195 
## Run 111 stress 0.07166982 
## Run 112 stress 0.06124509 
## ... Procrustes: rmse 0.01516347  max resid 0.04198589 
## Run 113 stress 0.06623457 
## Run 114 stress 0.06477955 
## Run 115 stress 0.06124501 
## ... Procrustes: rmse 0.01509515  max resid 0.04180273 
## Run 116 stress 0.06124509 
## ... Procrustes: rmse 0.01516867  max resid 0.04199885 
## Run 117 stress 0.0612336 
## ... Procrustes: rmse 9.698205e-06  max resid 2.165148e-05 
## ... Similar to previous best
## Run 118 stress 0.06124496 
## ... Procrustes: rmse 0.01503891  max resid 0.04165235 
## Run 119 stress 0.06477931 
## Run 120 stress 0.06124503 
## ... Procrustes: rmse 0.01511676  max resid 0.04185999 
## Run 121 stress 0.07411944 
## Run 122 stress 0.07166966 
## Run 123 stress 0.2362366 
## Run 124 stress 0.061245 
## ... Procrustes: rmse 0.01505682  max resid 0.04170148 
## Run 125 stress 0.0662346 
## Run 126 stress 0.06124488 
## ... Procrustes: rmse 0.01490415  max resid 0.04129076 
## Run 127 stress 0.08226162 
## Run 128 stress 0.06623463 
## Run 129 stress 0.07166982 
## Run 130 stress 0.07411947 
## Run 131 stress 0.06123361 
## ... Procrustes: rmse 1.845302e-05  max resid 4.330387e-05 
## ... Similar to previous best
## Run 132 stress 0.06477828 
## Run 133 stress 0.07166966 
## Run 134 stress 0.07411951 
## Run 135 stress 0.06623459 
## Run 136 stress 0.06623467 
## Run 137 stress 0.07411944 
## Run 138 stress 0.06124521 
## ... Procrustes: rmse 0.01521607  max resid 0.0421287 
## Run 139 stress 0.06623462 
## Run 140 stress 0.06124508 
## ... Procrustes: rmse 0.01515924  max resid 0.04197416 
## Run 141 stress 0.06124486 
## ... Procrustes: rmse 0.01471664  max resid 0.04078824 
## Run 142 stress 0.06124489 
## ... Procrustes: rmse 0.01485957  max resid 0.04117143 
## Run 143 stress 0.08226167 
## Run 144 stress 0.06623461 
## Run 145 stress 0.06124503 
## ... Procrustes: rmse 0.01510798  max resid 0.04183772 
## Run 146 stress 0.07166994 
## Run 147 stress 0.07166987 
## Run 148 stress 0.06477871 
## Run 149 stress 0.06124504 
## ... Procrustes: rmse 0.01510422  max resid 0.0418251 
## Run 150 stress 0.06623459 
## Run 151 stress 0.07411943 
## Run 152 stress 0.0662346 
## Run 153 stress 0.06623459 
## Run 154 stress 0.07166978 
## Run 155 stress 0.07166992 
## Run 156 stress 0.07166968 
## Run 157 stress 0.2361811 
## Run 158 stress 0.07411945 
## Run 159 stress 0.06124486 
## ... Procrustes: rmse 0.01481311  max resid 0.04104717 
## Run 160 stress 0.06477891 
## Run 161 stress 0.2381016 
## Run 162 stress 0.06477905 
## Run 163 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 1.139241e-05  max resid 2.370824e-05 
## ... Similar to previous best
## Run 164 stress 0.06623459 
## Run 165 stress 0.06124508 
## ... Procrustes: rmse 0.01514748  max resid 0.04194248 
## Run 166 stress 0.3407335 
## Run 167 stress 0.07411942 
## Run 168 stress 0.325193 
## Run 169 stress 0.07411944 
## Run 170 stress 0.305436 
## Run 171 stress 0.07411949 
## Run 172 stress 0.07411954 
## Run 173 stress 0.0741194 
## Run 174 stress 0.06623457 
## Run 175 stress 0.07411938 
## Run 176 stress 0.06477878 
## Run 177 stress 0.06477903 
## Run 178 stress 0.06124491 
## ... Procrustes: rmse 0.01496181  max resid 0.04144591 
## Run 179 stress 0.0662346 
## Run 180 stress 0.06623458 
## Run 181 stress 0.06623463 
## Run 182 stress 0.08226156 
## Run 183 stress 0.07411941 
## Run 184 stress 0.08226169 
## Run 185 stress 0.0741195 
## Run 186 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 4.270022e-06  max resid 9.569375e-06 
## ... Similar to previous best
## Run 187 stress 0.0612449 
## ... Procrustes: rmse 0.0149344  max resid 0.04137225 
## Run 188 stress 0.06124503 
## ... Procrustes: rmse 0.01510985  max resid 0.04184222 
## Run 189 stress 0.06124531 
## ... Procrustes: rmse 0.01423045  max resid 0.03948118 
## Run 190 stress 0.06477889 
## Run 191 stress 0.06477939 
## Run 192 stress 0.07166965 
## Run 193 stress 0.06477834 
## Run 194 stress 0.07411952 
## Run 195 stress 0.07166968 
## Run 196 stress 0.07411942 
## Run 197 stress 0.06623465 
## Run 198 stress 0.06477909 
## Run 199 stress 0.300852 
## Run 200 stress 0.07166965 
## Run 201 stress 0.06124504 
## ... Procrustes: rmse 0.01506322  max resid 0.04171434 
## Run 202 stress 0.07166965 
## Run 203 stress 0.06623457 
## Run 204 stress 0.2593351 
## Run 205 stress 0.06623457 
## Run 206 stress 0.07411942 
## Run 207 stress 0.07166977 
## Run 208 stress 0.06477954 
## Run 209 stress 0.07411943 
## Run 210 stress 0.06623462 
## Run 211 stress 0.06623459 
## Run 212 stress 0.07411947 
## Run 213 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 2.380441e-06  max resid 5.694634e-06 
## ... Similar to previous best
## Run 214 stress 0.0741194 
## Run 215 stress 0.0662346 
## Run 216 stress 0.07411938 
## Run 217 stress 0.07411942 
## Run 218 stress 0.07411939 
## Run 219 stress 0.0741194 
## Run 220 stress 0.08226177 
## Run 221 stress 0.06477848 
## Run 222 stress 0.07166968 
## Run 223 stress 0.06477901 
## Run 224 stress 0.3407342 
## Run 225 stress 0.06623457 
## Run 226 stress 0.06124502 
## ... Procrustes: rmse 0.01509739  max resid 0.04180906 
## Run 227 stress 0.06124496 
## ... Procrustes: rmse 0.01503212  max resid 0.04163408 
## Run 228 stress 0.06623457 
## Run 229 stress 0.06477847 
## Run 230 stress 0.06477969 
## Run 231 stress 0.07166973 
## Run 232 stress 0.06623462 
## Run 233 stress 0.06477832 
## Run 234 stress 0.06124521 
## ... Procrustes: rmse 0.01525076  max resid 0.04221925 
## Run 235 stress 0.06623457 
## Run 236 stress 0.3407335 
## Run 237 stress 0.0612451 
## ... Procrustes: rmse 0.01511016  max resid 0.04183942 
## Run 238 stress 0.06124496 
## ... Procrustes: rmse 0.0145231  max resid 0.04026837 
## Run 239 stress 0.06124535 
## ... Procrustes: rmse 0.01424462  max resid 0.03951732 
## Run 240 stress 0.06623465 
## Run 241 stress 0.2520055 
## Run 242 stress 0.2362366 
## Run 243 stress 0.06124494 
## ... Procrustes: rmse 0.01500796  max resid 0.04156914 
## Run 244 stress 0.2345379 
## Run 245 stress 0.07166973 
## Run 246 stress 0.08226158 
## Run 247 stress 0.07411942 
## Run 248 stress 0.07166969 
## Run 249 stress 0.07411949 
## Run 250 stress 0.06623468 
## Run 251 stress 0.06477871 
## Run 252 stress 0.0612451 
## ... Procrustes: rmse 0.01516893  max resid 0.04199967 
## Run 253 stress 0.2570202 
## Run 254 stress 0.06124492 
## ... Procrustes: rmse 0.01497526  max resid 0.04148157 
## Run 255 stress 0.07166975 
## Run 256 stress 0.06623459 
## Run 257 stress 0.0741195 
## Run 258 stress 0.06623463 
## Run 259 stress 0.07166968 
## Run 260 stress 0.08226157 
## Run 261 stress 0.08226159 
## Run 262 stress 0.0612336 
## ... Procrustes: rmse 6.393697e-06  max resid 1.672268e-05 
## ... Similar to previous best
## Run 263 stress 0.06124528 
## ... Procrustes: rmse 0.015285  max resid 0.04230905 
## Run 264 stress 0.0716698 
## Run 265 stress 0.06124496 
## ... Procrustes: rmse 0.01503185  max resid 0.04163268 
## Run 266 stress 0.07411948 
## Run 267 stress 0.07411943 
## Run 268 stress 0.07166981 
## Run 269 stress 0.06124501 
## ... Procrustes: rmse 0.01508981  max resid 0.04178873 
## Run 270 stress 0.07411948 
## Run 271 stress 0.06477971 
## Run 272 stress 0.06123362 
## ... Procrustes: rmse 5.250669e-05  max resid 0.0001203502 
## ... Similar to previous best
## Run 273 stress 0.06477837 
## Run 274 stress 0.07166981 
## Run 275 stress 0.07166964 
## Run 276 stress 0.07411944 
## Run 277 stress 0.07411938 
## Run 278 stress 0.0741194 
## Run 279 stress 0.06623457 
## Run 280 stress 0.07411946 
## Run 281 stress 0.06477863 
## Run 282 stress 0.06623462 
## Run 283 stress 0.08226162 
## Run 284 stress 0.06477858 
## Run 285 stress 0.08226158 
## Run 286 stress 0.07411945 
## Run 287 stress 0.06477931 
## Run 288 stress 0.07166972 
## Run 289 stress 0.07411944 
## Run 290 stress 0.06623459 
## Run 291 stress 0.07411949 
## Run 292 stress 0.07411951 
## Run 293 stress 0.06124498 
## ... Procrustes: rmse 0.01504502  max resid 0.04166935 
## Run 294 stress 0.06477866 
## Run 295 stress 0.0612336 
## ... Procrustes: rmse 1.175404e-05  max resid 1.534816e-05 
## ... Similar to previous best
## Run 296 stress 0.07411957 
## Run 297 stress 0.06124492 
## ... Procrustes: rmse 0.01497184  max resid 0.0414726 
## Run 298 stress 0.06477919 
## Run 299 stress 0.06124522 
## ... Procrustes: rmse 0.01525572  max resid 0.04223188 
## Run 300 stress 0.0647785 
## Run 301 stress 0.07411956 
## Run 302 stress 0.06477827 
## Run 303 stress 0.06623462 
## Run 304 stress 0.06124513 
## ... Procrustes: rmse 0.01515855  max resid 0.04197463 
## Run 305 stress 0.06477846 
## Run 306 stress 0.0612336 
## ... Procrustes: rmse 7.660537e-06  max resid 1.208136e-05 
## ... Similar to previous best
## Run 307 stress 0.2593351 
## Run 308 stress 0.07411939 
## Run 309 stress 0.0741194 
## Run 310 stress 0.07166973 
## Run 311 stress 0.07411939 
## Run 312 stress 0.08226158 
## Run 313 stress 0.07166966 
## Run 314 stress 0.06477862 
## Run 315 stress 0.06124514 
## ... Procrustes: rmse 0.0151579  max resid 0.0419676 
## Run 316 stress 0.07166981 
## Run 317 stress 0.06124502 
## ... Procrustes: rmse 0.01509454  max resid 0.04180062 
## Run 318 stress 0.0716697 
## Run 319 stress 0.07411938 
## Run 320 stress 0.07411947 
## Run 321 stress 0.07411945 
## Run 322 stress 0.07411938 
## Run 323 stress 0.06623459 
## Run 324 stress 0.06623458 
## Run 325 stress 0.07411946 
## Run 326 stress 0.0741194 
## Run 327 stress 0.06623461 
## Run 328 stress 0.06623457 
## Run 329 stress 0.06124513 
## ... Procrustes: rmse 0.01519453  max resid 0.04206785 
## Run 330 stress 0.06123361 
## ... Procrustes: rmse 2.511771e-05  max resid 3.402395e-05 
## ... Similar to previous best
## Run 331 stress 0.0612336 
## ... Procrustes: rmse 9.775366e-06  max resid 1.986939e-05 
## ... Similar to previous best
## Run 332 stress 0.08226156 
## Run 333 stress 0.06623457 
## Run 334 stress 0.06477935 
## Run 335 stress 0.07166976 
## Run 336 stress 0.07411942 
## Run 337 stress 0.061245 
## ... Procrustes: rmse 0.01507634  max resid 0.04175168 
## Run 338 stress 0.07411942 
## Run 339 stress 0.06477828 
## Run 340 stress 0.06124522 
## ... Procrustes: rmse 0.01525588  max resid 0.04223291 
## Run 341 stress 0.07411939 
## Run 342 stress 0.06623461 
## Run 343 stress 0.07411944 
## Run 344 stress 0.06477953 
## Run 345 stress 0.07166983 
## Run 346 stress 0.06623463 
## Run 347 stress 0.0647796 
## Run 348 stress 0.06477874 
## Run 349 stress 0.07411939 
## Run 350 stress 0.311412 
## Run 351 stress 0.06623457 
## Run 352 stress 0.06124536 
## ... Procrustes: rmse 0.01529888  max resid 0.04234416 
## Run 353 stress 0.07411949 
## Run 354 stress 0.2518588 
## Run 355 stress 0.07411942 
## Run 356 stress 0.0741194 
## Run 357 stress 0.06123363 
## ... Procrustes: rmse 7.777242e-05  max resid 0.0001021457 
## ... Similar to previous best
## Run 358 stress 0.06623459 
## Run 359 stress 0.0741194 
## Run 360 stress 0.06623469 
## Run 361 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 2.873554e-06  max resid 6.602872e-06 
## ... Similar to previous best
## Run 362 stress 0.06477879 
## Run 363 stress 0.06477879 
## Run 364 stress 0.0647792 
## Run 365 stress 0.06123362 
## ... Procrustes: rmse 6.032999e-05  max resid 7.612762e-05 
## ... Similar to previous best
## Run 366 stress 0.06124492 
## ... Procrustes: rmse 0.01458546  max resid 0.04043679 
## Run 367 stress 0.06477946 
## Run 368 stress 0.06623466 
## Run 369 stress 0.0647796 
## Run 370 stress 0.07411945 
## Run 371 stress 0.07411941 
## Run 372 stress 0.08226162 
## Run 373 stress 0.0741194 
## Run 374 stress 0.07411941 
## Run 375 stress 0.07411948 
## Run 376 stress 0.06623458 
## Run 377 stress 0.06477883 
## Run 378 stress 0.06477888 
## Run 379 stress 0.07411938 
## Run 380 stress 0.06623458 
## Run 381 stress 0.06124501 
## ... Procrustes: rmse 0.01507633  max resid 0.04175036 
## Run 382 stress 0.2381016 
## Run 383 stress 0.07411938 
## Run 384 stress 0.06623461 
## Run 385 stress 0.0741194 
## Run 386 stress 0.06623459 
## Run 387 stress 0.06623466 
## Run 388 stress 0.07166978 
## Run 389 stress 0.06124507 
## ... Procrustes: rmse 0.0150412  max resid 0.04166146 
## Run 390 stress 0.07411939 
## Run 391 stress 0.07411944 
## Run 392 stress 0.06124503 
## ... Procrustes: rmse 0.01511349  max resid 0.04185177 
## Run 393 stress 0.06477828 
## Run 394 stress 0.06623458 
## Run 395 stress 0.06477852 
## Run 396 stress 0.07411946 
## Run 397 stress 0.0741194 
## Run 398 stress 0.06124509 
## ... Procrustes: rmse 0.01516529  max resid 0.04198969 
## Run 399 stress 0.0822616 
## Run 400 stress 0.07411941 
## Run 401 stress 0.06477899 
## Run 402 stress 0.06623463 
## Run 403 stress 0.06477881 
## Run 404 stress 0.08226163 
## Run 405 stress 0.0822616 
## Run 406 stress 0.06623457 
## Run 407 stress 0.06623465 
## Run 408 stress 0.0662346 
## Run 409 stress 0.2629205 
## Run 410 stress 0.3269891 
## Run 411 stress 0.06623458 
## Run 412 stress 0.06623472 
## Run 413 stress 0.06623458 
## Run 414 stress 0.08226155 
## Run 415 stress 0.08226162 
## Run 416 stress 0.07411939 
## Run 417 stress 0.06477907 
## Run 418 stress 0.06623457 
## Run 419 stress 0.0612451 
## ... Procrustes: rmse 0.01517443  max resid 0.04201453 
## Run 420 stress 0.07411939 
## Run 421 stress 0.06123361 
## ... Procrustes: rmse 1.843663e-05  max resid 4.242721e-05 
## ... Similar to previous best
## Run 422 stress 0.06477873 
## Run 423 stress 0.06477849 
## Run 424 stress 0.06124509 
## ... Procrustes: rmse 0.0151483  max resid 0.0419461 
## Run 425 stress 0.07166979 
## Run 426 stress 0.07166977 
## Run 427 stress 0.06623459 
## Run 428 stress 0.07411938 
## Run 429 stress 0.07411951 
## Run 430 stress 0.3403703 
## Run 431 stress 0.07411949 
## Run 432 stress 0.07411947 
## Run 433 stress 0.09093964 
## Run 434 stress 0.07411952 
## Run 435 stress 0.06124501 
## ... Procrustes: rmse 0.01508006  max resid 0.04176321 
## Run 436 stress 0.07411938 
## Run 437 stress 0.08226165 
## Run 438 stress 0.0612336 
## ... Procrustes: rmse 7.630716e-06  max resid 9.428456e-06 
## ... Similar to previous best
## Run 439 stress 0.07411946 
## Run 440 stress 0.3157867 
## Run 441 stress 0.0662346 
## Run 442 stress 0.08226165 
## Run 443 stress 0.06623458 
## Run 444 stress 0.06623469 
## Run 445 stress 0.06477979 
## Run 446 stress 0.07411946 
## Run 447 stress 0.08226167 
## Run 448 stress 0.06124512 
## ... Procrustes: rmse 0.01518546  max resid 0.04204463 
## Run 449 stress 0.07166964 
## Run 450 stress 0.3252882 
## Run 451 stress 0.06123361 
## ... Procrustes: rmse 1.307703e-05  max resid 1.973796e-05 
## ... Similar to previous best
## Run 452 stress 0.06124496 
## ... Procrustes: rmse 0.01503582  max resid 0.0416436 
## Run 453 stress 0.06623457 
## Run 454 stress 0.06623458 
## Run 455 stress 0.0612336 
## ... Procrustes: rmse 1.064345e-05  max resid 2.485523e-05 
## ... Similar to previous best
## Run 456 stress 0.07411941 
## Run 457 stress 0.2345379 
## Run 458 stress 0.06477889 
## Run 459 stress 0.06124512 
## ... Procrustes: rmse 0.01517089  max resid 0.04200678 
## Run 460 stress 0.2570191 
## Run 461 stress 0.06124508 
## ... Procrustes: rmse 0.01515641  max resid 0.04196615 
## Run 462 stress 0.07411939 
## Run 463 stress 0.0612336 
## ... Procrustes: rmse 1.019825e-05  max resid 2.204993e-05 
## ... Similar to previous best
## Run 464 stress 0.06477925 
## Run 465 stress 0.06477826 
## Run 466 stress 0.3407338 
## Run 467 stress 0.08226169 
## Run 468 stress 0.06123361 
## ... Procrustes: rmse 2.743046e-05  max resid 6.429227e-05 
## ... Similar to previous best
## Run 469 stress 0.06623458 
## Run 470 stress 0.0612452 
## ... Procrustes: rmse 0.01524406  max resid 0.0422011 
## Run 471 stress 0.06623458 
## Run 472 stress 0.06623466 
## Run 473 stress 0.07411946 
## Run 474 stress 0.07411943 
## Run 475 stress 0.07166971 
## Run 476 stress 0.06477892 
## Run 477 stress 0.06477844 
## Run 478 stress 0.06124488 
## ... Procrustes: rmse 0.01490081  max resid 0.04128201 
## Run 479 stress 0.08226157 
## Run 480 stress 0.2548128 
## Run 481 stress 0.06124505 
## ... Procrustes: rmse 0.0151068  max resid 0.04183177 
## Run 482 stress 0.0716698 
## Run 483 stress 0.06477844 
## Run 484 stress 0.3266727 
## Run 485 stress 0.07411952 
## Run 486 stress 0.06477878 
## Run 487 stress 0.06124492 
## ... Procrustes: rmse 0.01497704  max resid 0.041486 
## Run 488 stress 0.06124517 
## ... Procrustes: rmse 0.01522314  max resid 0.04214519 
## Run 489 stress 0.07166971 
## Run 490 stress 0.07411938 
## Run 491 stress 0.06623468 
## Run 492 stress 0.06124493 
## ... Procrustes: rmse 0.01456431  max resid 0.04037918 
## Run 493 stress 0.06124508 
## ... Procrustes: rmse 0.01515175  max resid 0.0419541 
## Run 494 stress 0.06124501 
## ... Procrustes: rmse 0.01508851  max resid 0.04178431 
## Run 495 stress 0.08226171 
## Run 496 stress 0.06477934 
## Run 497 stress 0.06477941 
## Run 498 stress 0.0741194 
## Run 499 stress 0.07166983 
## Run 500 stress 0.06623459 
## *** Best solution repeated 8 times
# Stratified lakes and ocean sites
jpreseso_NMDS <- metaMDS(jpreseso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 9.59483e-05 
## Run 1 stress 9.472853e-05 
## ... New best solution
## ... Procrustes: rmse 6.410754e-05  max resid 0.0001483241 
## ... Similar to previous best
## Run 2 stress 9.235246e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001627853  max resid 0.0003795381 
## ... Similar to previous best
## Run 3 stress 9.566894e-05 
## ... Procrustes: rmse 0.0001822457  max resid 0.0003903129 
## ... Similar to previous best
## Run 4 stress 9.751814e-05 
## ... Procrustes: rmse 4.00838e-05  max resid 0.0001000457 
## ... Similar to previous best
## Run 5 stress 8.74836e-05 
## ... New best solution
## ... Procrustes: rmse 0.000159803  max resid 0.0002788223 
## ... Similar to previous best
## Run 6 stress 9.960134e-05 
## ... Procrustes: rmse 8.498542e-05  max resid 0.0001964046 
## ... Similar to previous best
## Run 7 stress 9.731831e-05 
## ... Procrustes: rmse 0.0001574507  max resid 0.0002559306 
## ... Similar to previous best
## Run 8 stress 9.217079e-05 
## ... Procrustes: rmse 0.0001783147  max resid 0.0003006826 
## ... Similar to previous best
## Run 9 stress 8.130857e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001116355  max resid 0.0002425482 
## ... Similar to previous best
## Run 10 stress 9.507079e-05 
## ... Procrustes: rmse 0.0001844149  max resid 0.0003039696 
## ... Similar to previous best
## Run 11 stress 9.188973e-05 
## ... Procrustes: rmse 0.000186963  max resid 0.000297401 
## ... Similar to previous best
## Run 12 stress 9.296862e-05 
## ... Procrustes: rmse 0.0001466515  max resid 0.0002524603 
## ... Similar to previous best
## Run 13 stress 9.160853e-05 
## ... Procrustes: rmse 9.073004e-05  max resid 0.0001740409 
## ... Similar to previous best
## Run 14 stress 8.570971e-05 
## ... Procrustes: rmse 0.0001285523  max resid 0.0002992416 
## ... Similar to previous best
## Run 15 stress 9.268619e-05 
## ... Procrustes: rmse 0.000160145  max resid 0.0002605717 
## ... Similar to previous best
## Run 16 stress 9.1126e-05 
## ... Procrustes: rmse 0.0001460265  max resid 0.0002230246 
## ... Similar to previous best
## Run 17 stress 9.209561e-05 
## ... Procrustes: rmse 0.0001426953  max resid 0.0002177961 
## ... Similar to previous best
## Run 18 stress 9.598348e-05 
## ... Procrustes: rmse 0.0001655659  max resid 0.0002837245 
## ... Similar to previous best
## Run 19 stress 9.335202e-05 
## ... Procrustes: rmse 0.0001499447  max resid 0.000262054 
## ... Similar to previous best
## Run 20 stress 9.802253e-05 
## ... Procrustes: rmse 0.0001493903  max resid 0.0002612456 
## ... Similar to previous best
## Run 21 stress 8.231371e-05 
## ... Procrustes: rmse 0.0001362094  max resid 0.0002063267 
## ... Similar to previous best
## Run 22 stress 9.814228e-05 
## ... Procrustes: rmse 0.0001405211  max resid 0.0002668665 
## ... Similar to previous best
## Run 23 stress 9.983722e-05 
## ... Procrustes: rmse 0.0001933951  max resid 0.0004021422 
## ... Similar to previous best
## Run 24 stress 8.137694e-05 
## ... Procrustes: rmse 7.900875e-05  max resid 0.0001681562 
## ... Similar to previous best
## Run 25 stress 9.613402e-05 
## ... Procrustes: rmse 0.0001954079  max resid 0.0003084112 
## ... Similar to previous best
## Run 26 stress 9.751477e-05 
## ... Procrustes: rmse 0.0001782074  max resid 0.0002726834 
## ... Similar to previous best
## Run 27 stress 9.941753e-05 
## ... Procrustes: rmse 0.0001815002  max resid 0.000274535 
## ... Similar to previous best
## Run 28 stress 9.712703e-05 
## ... Procrustes: rmse 0.0001909755  max resid 0.0003001171 
## ... Similar to previous best
## Run 29 stress 9.598096e-05 
## ... Procrustes: rmse 0.000168478  max resid 0.0002800472 
## ... Similar to previous best
## Run 30 stress 8.919522e-05 
## ... Procrustes: rmse 0.0001493558  max resid 0.0002599304 
## ... Similar to previous best
## Run 31 stress 9.788033e-05 
## ... Procrustes: rmse 0.0002163842  max resid 0.0003144053 
## ... Similar to previous best
## Run 32 stress 9.781457e-05 
## ... Procrustes: rmse 0.0001655937  max resid 0.0002846934 
## ... Similar to previous best
## Run 33 stress 9.705978e-05 
## ... Procrustes: rmse 0.0001914816  max resid 0.0003124464 
## ... Similar to previous best
## Run 34 stress 9.74657e-05 
## ... Procrustes: rmse 0.0001952112  max resid 0.0004031115 
## ... Similar to previous best
## Run 35 stress 8.495111e-05 
## ... Procrustes: rmse 0.0001549849  max resid 0.0002481814 
## ... Similar to previous best
## Run 36 stress 9.599517e-05 
## ... Procrustes: rmse 0.0001497556  max resid 0.0002625024 
## ... Similar to previous best
## Run 37 stress 8.047476e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001316529  max resid 0.0003171344 
## ... Similar to previous best
## Run 38 stress 9.931704e-05 
## ... Procrustes: rmse 0.0001786729  max resid 0.0003410153 
## ... Similar to previous best
## Run 39 stress 9.457163e-05 
## ... Procrustes: rmse 0.000176875  max resid 0.0003870977 
## ... Similar to previous best
## Run 40 stress 9.9266e-05 
## ... Procrustes: rmse 0.0002074735  max resid 0.000394718 
## ... Similar to previous best
## Run 41 stress 9.980356e-05 
## ... Procrustes: rmse 0.0002205637  max resid 0.0004146662 
## ... Similar to previous best
## Run 42 stress 9.852857e-05 
## ... Procrustes: rmse 0.0001865672  max resid 0.0003469429 
## ... Similar to previous best
## Run 43 stress 9.881635e-05 
## ... Procrustes: rmse 0.0001138065  max resid 0.0001915559 
## ... Similar to previous best
## Run 44 stress 9.521463e-05 
## ... Procrustes: rmse 0.0001653009  max resid 0.0002942017 
## ... Similar to previous best
## Run 45 stress 8.881287e-05 
## ... Procrustes: rmse 0.0001528444  max resid 0.0002836054 
## ... Similar to previous best
## Run 46 stress 9.355816e-05 
## ... Procrustes: rmse 0.0001308011  max resid 0.0002599294 
## ... Similar to previous best
## Run 47 stress 9.588184e-05 
## ... Procrustes: rmse 0.0001993539  max resid 0.0003899248 
## ... Similar to previous best
## Run 48 stress 9.698567e-05 
## ... Procrustes: rmse 0.0002090978  max resid 0.0004048869 
## ... Similar to previous best
## Run 49 stress 8.49283e-05 
## ... Procrustes: rmse 0.0001227485  max resid 0.0002621081 
## ... Similar to previous best
## Run 50 stress 9.528076e-05 
## ... Procrustes: rmse 0.0001865091  max resid 0.0003563759 
## ... Similar to previous best
## Run 51 stress 9.50318e-05 
## ... Procrustes: rmse 0.000214693  max resid 0.0003097155 
## ... Similar to previous best
## Run 52 stress 9.864957e-05 
## ... Procrustes: rmse 7.852421e-05  max resid 0.0001643219 
## ... Similar to previous best
## Run 53 stress 9.658313e-05 
## ... Procrustes: rmse 0.0001749757  max resid 0.0002944841 
## ... Similar to previous best
## Run 54 stress 9.699716e-05 
## ... Procrustes: rmse 0.0001507418  max resid 0.0002807991 
## ... Similar to previous best
## Run 55 stress 9.32581e-05 
## ... Procrustes: rmse 0.0001313621  max resid 0.0002872956 
## ... Similar to previous best
## Run 56 stress 9.80536e-05 
## ... Procrustes: rmse 0.0001382728  max resid 0.0002475549 
## ... Similar to previous best
## Run 57 stress 9.497487e-05 
## ... Procrustes: rmse 0.0001467458  max resid 0.000281073 
## ... Similar to previous best
## Run 58 stress 9.956962e-05 
## ... Procrustes: rmse 0.0001677289  max resid 0.0003576907 
## ... Similar to previous best
## Run 59 stress 9.456578e-05 
## ... Procrustes: rmse 0.0002024997  max resid 0.0003943128 
## ... Similar to previous best
## Run 60 stress 9.532828e-05 
## ... Procrustes: rmse 0.0001906505  max resid 0.0003540351 
## ... Similar to previous best
## Run 61 stress 9.288692e-05 
## ... Procrustes: rmse 0.0002142741  max resid 0.0003086579 
## ... Similar to previous best
## Run 62 stress 9.365513e-05 
## ... Procrustes: rmse 9.629852e-05  max resid 0.0001999456 
## ... Similar to previous best
## Run 63 stress 8.604398e-05 
## ... Procrustes: rmse 0.0001899444  max resid 0.0003659412 
## ... Similar to previous best
## Run 64 stress 8.930571e-05 
## ... Procrustes: rmse 9.75541e-05  max resid 0.0001737136 
## ... Similar to previous best
## Run 65 stress 9.450652e-05 
## ... Procrustes: rmse 0.000197548  max resid 0.0003996987 
## ... Similar to previous best
## Run 66 stress 8.899475e-05 
## ... Procrustes: rmse 0.0001683803  max resid 0.0003397223 
## ... Similar to previous best
## Run 67 stress 9.576681e-05 
## ... Procrustes: rmse 0.0001867573  max resid 0.000309956 
## ... Similar to previous best
## Run 68 stress 9.760111e-05 
## ... Procrustes: rmse 0.0002164877  max resid 0.000410266 
## ... Similar to previous best
## Run 69 stress 9.299233e-05 
## ... Procrustes: rmse 0.0001614377  max resid 0.000294574 
## ... Similar to previous best
## Run 70 stress 9.57717e-05 
## ... Procrustes: rmse 6.499181e-05  max resid 0.0001593769 
## ... Similar to previous best
## Run 71 stress 8.511255e-05 
## ... Procrustes: rmse 0.0001835057  max resid 0.0003761058 
## ... Similar to previous best
## Run 72 stress 9.852994e-05 
## ... Procrustes: rmse 0.000114133  max resid 0.000188846 
## ... Similar to previous best
## Run 73 stress 9.636598e-05 
## ... Procrustes: rmse 0.0001846873  max resid 0.0003569318 
## ... Similar to previous best
## Run 74 stress 9.43718e-05 
## ... Procrustes: rmse 0.0002037909  max resid 0.0003968819 
## ... Similar to previous best
## Run 75 stress 9.621628e-05 
## ... Procrustes: rmse 0.0002201752  max resid 0.0003413753 
## ... Similar to previous best
## Run 76 stress 8.924168e-05 
## ... Procrustes: rmse 0.0001728758  max resid 0.0003380219 
## ... Similar to previous best
## Run 77 stress 9.920342e-05 
## ... Procrustes: rmse 0.0002147125  max resid 0.0004113574 
## ... Similar to previous best
## Run 78 stress 8.700294e-05 
## ... Procrustes: rmse 0.0002034663  max resid 0.0002979376 
## ... Similar to previous best
## Run 79 stress 9.896758e-05 
## ... Procrustes: rmse 0.0002144522  max resid 0.0004051056 
## ... Similar to previous best
## Run 80 stress 9.317783e-05 
## ... Procrustes: rmse 0.0001102257  max resid 0.0001844143 
## ... Similar to previous best
## Run 81 stress 8.85321e-05 
## ... Procrustes: rmse 0.0001274794  max resid 0.0002683305 
## ... Similar to previous best
## Run 82 stress 9.60468e-05 
## ... Procrustes: rmse 0.0001161546  max resid 0.0001887846 
## ... Similar to previous best
## Run 83 stress 9.289036e-05 
## ... Procrustes: rmse 9.971872e-05  max resid 0.0001762291 
## ... Similar to previous best
## Run 84 stress 9.143646e-05 
## ... Procrustes: rmse 0.0001994652  max resid 0.0003918693 
## ... Similar to previous best
## Run 85 stress 9.399379e-05 
## ... Procrustes: rmse 0.000174663  max resid 0.0003733766 
## ... Similar to previous best
## Run 86 stress 9.859214e-05 
## ... Procrustes: rmse 0.0001653936  max resid 0.0002913269 
## ... Similar to previous best
## Run 87 stress 9.355423e-05 
## ... Procrustes: rmse 0.000208297  max resid 0.0004020388 
## ... Similar to previous best
## Run 88 stress 9.88448e-05 
## ... Procrustes: rmse 0.0002115594  max resid 0.0004077042 
## ... Similar to previous best
## Run 89 stress 9.311898e-05 
## ... Procrustes: rmse 0.0001403462  max resid 0.0002966942 
## ... Similar to previous best
## Run 90 stress 9.739987e-05 
## ... Procrustes: rmse 0.0001814549  max resid 0.0003377949 
## ... Similar to previous best
## Run 91 stress 9.810593e-05 
## ... Procrustes: rmse 0.0001394223  max resid 0.000265711 
## ... Similar to previous best
## Run 92 stress 9.838217e-05 
## ... Procrustes: rmse 0.0001738172  max resid 0.0002932993 
## ... Similar to previous best
## Run 93 stress 9.093251e-05 
## ... Procrustes: rmse 0.0001590226  max resid 0.0002378459 
## ... Similar to previous best
## Run 94 stress 9.797408e-05 
## ... Procrustes: rmse 0.0002141483  max resid 0.0004052919 
## ... Similar to previous best
## Run 95 stress 9.624738e-05 
## ... Procrustes: rmse 0.0001726529  max resid 0.0003693958 
## ... Similar to previous best
## Run 96 stress 8.736752e-05 
## ... Procrustes: rmse 0.0001260944  max resid 0.0002669327 
## ... Similar to previous best
## Run 97 stress 9.913115e-05 
## ... Procrustes: rmse 0.0001717984  max resid 0.000303429 
## ... Similar to previous best
## Run 98 stress 8.356296e-05 
## ... Procrustes: rmse 9.935563e-05  max resid 0.0002171429 
## ... Similar to previous best
## Run 99 stress 9.847301e-05 
## ... Procrustes: rmse 0.0002157581  max resid 0.0004135892 
## ... Similar to previous best
## Run 100 stress 9.997845e-05 
## ... Procrustes: rmse 0.0002128409  max resid 0.0004037051 
## ... Similar to previous best
## Run 101 stress 9.411409e-05 
## ... Procrustes: rmse 0.0001771123  max resid 0.0003019474 
## ... Similar to previous best
## Run 102 stress 9.278171e-05 
## ... Procrustes: rmse 0.0001329356  max resid 0.0002732758 
## ... Similar to previous best
## Run 103 stress 9.819705e-05 
## ... Procrustes: rmse 0.0002332526  max resid 0.0004260052 
## ... Similar to previous best
## Run 104 stress 9.764851e-05 
## ... Procrustes: rmse 0.0001683509  max resid 0.0003000656 
## ... Similar to previous best
## Run 105 stress 9.702199e-05 
## ... Procrustes: rmse 0.0002112348  max resid 0.000391549 
## ... Similar to previous best
## Run 106 stress 9.857292e-05 
## ... Procrustes: rmse 0.0001712508  max resid 0.0003046404 
## ... Similar to previous best
## Run 107 stress 9.043771e-05 
## ... Procrustes: rmse 0.000103053  max resid 0.0001739029 
## ... Similar to previous best
## Run 108 stress 9.716275e-05 
## ... Procrustes: rmse 0.000209391  max resid 0.0004019824 
## ... Similar to previous best
## Run 109 stress 9.662108e-05 
## ... Procrustes: rmse 0.0001169391  max resid 0.0001913872 
## ... Similar to previous best
## Run 110 stress 9.705841e-05 
## ... Procrustes: rmse 0.0002010646  max resid 0.0003867611 
## ... Similar to previous best
## Run 111 stress 9.967559e-05 
## ... Procrustes: rmse 0.0002177259  max resid 0.0004102581 
## ... Similar to previous best
## Run 112 stress 9.819769e-05 
## ... Procrustes: rmse 0.0001712365  max resid 0.0003015962 
## ... Similar to previous best
## Run 113 stress 8.315298e-05 
## ... Procrustes: rmse 0.0001881227  max resid 0.000372244 
## ... Similar to previous best
## Run 114 stress 9.42395e-05 
## ... Procrustes: rmse 0.0001824735  max resid 0.0003496531 
## ... Similar to previous best
## Run 115 stress 9.730022e-05 
## ... Procrustes: rmse 0.0002216518  max resid 0.0003169278 
## ... Similar to previous best
## Run 116 stress 9.634058e-05 
## ... Procrustes: rmse 0.0002059541  max resid 0.0003870336 
## ... Similar to previous best
## Run 117 stress 9.734319e-05 
## ... Procrustes: rmse 0.0001625889  max resid 0.0002748984 
## ... Similar to previous best
## Run 118 stress 7.133892e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001065925  max resid 0.0002546197 
## ... Similar to previous best
## Run 119 stress 9.7916e-05 
## ... Procrustes: rmse 0.0001938948  max resid 0.0003064627 
## ... Similar to previous best
## Run 120 stress 9.422314e-05 
## ... Procrustes: rmse 0.00018419  max resid 0.0003001541 
## ... Similar to previous best
## Run 121 stress 9.388915e-05 
## ... Procrustes: rmse 0.0001712055  max resid 0.000292639 
## ... Similar to previous best
## Run 122 stress 9.778155e-05 
## ... Procrustes: rmse 0.0001516088  max resid 0.0002551109 
## ... Similar to previous best
## Run 123 stress 9.605624e-05 
## ... Procrustes: rmse 0.0001726771  max resid 0.0002660099 
## ... Similar to previous best
## Run 124 stress 9.924771e-05 
## ... Procrustes: rmse 0.0001445872  max resid 0.000253415 
## ... Similar to previous best
## Run 125 stress 8.438688e-05 
## ... Procrustes: rmse 0.0001507556  max resid 0.0002693028 
## ... Similar to previous best
## Run 126 stress 9.406553e-05 
## ... Procrustes: rmse 0.0001159355  max resid 0.0002246903 
## ... Similar to previous best
## Run 127 stress 9.719069e-05 
## ... Procrustes: rmse 0.0001502066  max resid 0.0002230682 
## ... Similar to previous best
## Run 128 stress 9.958222e-05 
## ... Procrustes: rmse 9.175313e-05  max resid 0.0002163784 
## ... Similar to previous best
## Run 129 stress 9.443625e-05 
## ... Procrustes: rmse 0.0001636795  max resid 0.0003128253 
## ... Similar to previous best
## Run 130 stress 9.718798e-05 
## ... Procrustes: rmse 0.0001747132  max resid 0.0002992996 
## ... Similar to previous best
## Run 131 stress 7.49201e-05 
## ... Procrustes: rmse 0.0001087371  max resid 0.0002198579 
## ... Similar to previous best
## Run 132 stress 9.673698e-05 
## ... Procrustes: rmse 0.0001366153  max resid 0.000240198 
## ... Similar to previous best
## Run 133 stress 9.247814e-05 
## ... Procrustes: rmse 0.0002009961  max resid 0.0003066986 
## ... Similar to previous best
## Run 134 stress 9.900477e-05 
## ... Procrustes: rmse 0.0001447377  max resid 0.0002585225 
## ... Similar to previous best
## Run 135 stress 9.770068e-05 
## ... Procrustes: rmse 0.0001522042  max resid 0.0002550112 
## ... Similar to previous best
## Run 136 stress 9.741872e-05 
## ... Procrustes: rmse 0.0001781989  max resid 0.0003003425 
## ... Similar to previous best
## Run 137 stress 9.56598e-05 
## ... Procrustes: rmse 0.0001332902  max resid 0.0001927633 
## ... Similar to previous best
## Run 138 stress 9.947022e-05 
## ... Procrustes: rmse 0.0001444916  max resid 0.0002559937 
## ... Similar to previous best
## Run 139 stress 9.434095e-05 
## ... Procrustes: rmse 0.0001360573  max resid 0.0002471295 
## ... Similar to previous best
## Run 140 stress 9.066083e-05 
## ... Procrustes: rmse 0.0001676857  max resid 0.0002897838 
## ... Similar to previous best
## Run 141 stress 9.48704e-05 
## ... Procrustes: rmse 0.0001449238  max resid 0.0003360067 
## ... Similar to previous best
## Run 142 stress 9.376319e-05 
## ... Procrustes: rmse 0.0001985386  max resid 0.0003099228 
## ... Similar to previous best
## Run 143 stress 9.716387e-05 
## ... Procrustes: rmse 0.0001520133  max resid 0.0002542088 
## ... Similar to previous best
## Run 144 stress 6.478295e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001004449  max resid 0.0001669617 
## ... Similar to previous best
## Run 145 stress 9.569718e-05 
## ... Procrustes: rmse 0.0001751201  max resid 0.0002625806 
## ... Similar to previous best
## Run 146 stress 9.856185e-05 
## ... Procrustes: rmse 0.000209856  max resid 0.0002990097 
## ... Similar to previous best
## Run 147 stress 9.633713e-05 
## ... Procrustes: rmse 0.000181604  max resid 0.0002708795 
## ... Similar to previous best
## Run 148 stress 9.5619e-05 
## ... Procrustes: rmse 0.000173298  max resid 0.0002393971 
## ... Similar to previous best
## Run 149 stress 9.439623e-05 
## ... Procrustes: rmse 0.0001644833  max resid 0.0002687246 
## ... Similar to previous best
## Run 150 stress 9.943952e-05 
## ... Procrustes: rmse 0.000167542  max resid 0.000309174 
## ... Similar to previous best
## Run 151 stress 9.433921e-05 
## ... Procrustes: rmse 0.0001708988  max resid 0.0003093583 
## ... Similar to previous best
## Run 152 stress 9.95194e-05 
## ... Procrustes: rmse 0.0001825381  max resid 0.0003240506 
## ... Similar to previous best
## Run 153 stress 9.971397e-05 
## ... Procrustes: rmse 0.0001890655  max resid 0.0002812172 
## ... Similar to previous best
## Run 154 stress 9.815245e-05 
## ... Procrustes: rmse 0.0001649722  max resid 0.000287431 
## ... Similar to previous best
## Run 155 stress 9.426072e-05 
## ... Procrustes: rmse 0.0001255423  max resid 0.0002221185 
## ... Similar to previous best
## Run 156 stress 9.47884e-05 
## ... Procrustes: rmse 0.0001712848  max resid 0.0003075444 
## ... Similar to previous best
## Run 157 stress 9.608849e-05 
## ... Procrustes: rmse 0.0001752976  max resid 0.0003138597 
## ... Similar to previous best
## Run 158 stress 9.922737e-05 
## ... Procrustes: rmse 0.0001899112  max resid 0.0002787135 
## ... Similar to previous best
## Run 159 stress 9.543445e-05 
## ... Procrustes: rmse 0.0001660207  max resid 0.000266285 
## ... Similar to previous best
## Run 160 stress 9.767552e-05 
## ... Procrustes: rmse 0.0001698036  max resid 0.0002362495 
## ... Similar to previous best
## Run 161 stress 9.691756e-05 
## ... Procrustes: rmse 0.0001741159  max resid 0.0003143254 
## ... Similar to previous best
## Run 162 stress 9.540591e-05 
## ... Procrustes: rmse 0.000177177  max resid 0.0002813876 
## ... Similar to previous best
## Run 163 stress 9.609043e-05 
## ... Procrustes: rmse 0.0001314587  max resid 0.0002091217 
## ... Similar to previous best
## Run 164 stress 6.093316e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001099607  max resid 0.0002440023 
## ... Similar to previous best
## Run 165 stress 9.577316e-05 
## ... Procrustes: rmse 0.0001056195  max resid 0.0002133546 
## ... Similar to previous best
## Run 166 stress 9.858735e-05 
## ... Procrustes: rmse 0.00018138  max resid 0.0003164366 
## ... Similar to previous best
## Run 167 stress 9.412705e-05 
## ... Procrustes: rmse 0.0001759338  max resid 0.0003490775 
## ... Similar to previous best
## Run 168 stress 9.249174e-05 
## ... Procrustes: rmse 5.440871e-05  max resid 8.189154e-05 
## ... Similar to previous best
## Run 169 stress 9.575889e-05 
## ... Procrustes: rmse 0.0001900534  max resid 0.0003238485 
## ... Similar to previous best
## Run 170 stress 7.029048e-05 
## ... Procrustes: rmse 0.0001351741  max resid 0.0002840152 
## ... Similar to previous best
## Run 171 stress 9.520087e-05 
## ... Procrustes: rmse 0.0001850973  max resid 0.0002635348 
## ... Similar to previous best
## Run 172 stress 9.785101e-05 
## ... Procrustes: rmse 0.000181222  max resid 0.0003202555 
## ... Similar to previous best
## Run 173 stress 9.916433e-05 
## ... Procrustes: rmse 0.0001771678  max resid 0.000383521 
## ... Similar to previous best
## Run 174 stress 9.301833e-05 
## ... Procrustes: rmse 0.0001513406  max resid 0.0002880673 
## ... Similar to previous best
## Run 175 stress 9.023926e-05 
## ... Procrustes: rmse 7.221175e-05  max resid 0.0001086768 
## ... Similar to previous best
## Run 176 stress 7.335725e-05 
## ... Procrustes: rmse 0.0001388631  max resid 0.0002861311 
## ... Similar to previous best
## Run 177 stress 9.994893e-05 
## ... Procrustes: rmse 0.0001793952  max resid 0.0003819191 
## ... Similar to previous best
## Run 178 stress 9.052671e-05 
## ... Procrustes: rmse 9.684777e-05  max resid 0.000176965 
## ... Similar to previous best
## Run 179 stress 9.585914e-05 
## ... Procrustes: rmse 0.000208479  max resid 0.0004082683 
## ... Similar to previous best
## Run 180 stress 8.586177e-05 
## ... Procrustes: rmse 0.0001541002  max resid 0.0003360505 
## ... Similar to previous best
## Run 181 stress 9.903843e-05 
## ... Procrustes: rmse 8.555554e-05  max resid 0.0001271458 
## ... Similar to previous best
## Run 182 stress 9.26823e-05 
## ... Procrustes: rmse 0.0001316093  max resid 0.00027914 
## ... Similar to previous best
## Run 183 stress 9.766883e-05 
## ... Procrustes: rmse 0.0001930098  max resid 0.0003070835 
## ... Similar to previous best
## Run 184 stress 8.827494e-05 
## ... Procrustes: rmse 6.766997e-05  max resid 0.0001020943 
## ... Similar to previous best
## Run 185 stress 9.145722e-05 
## ... Procrustes: rmse 0.0001812097  max resid 0.0002954259 
## ... Similar to previous best
## Run 186 stress 9.631833e-05 
## ... Procrustes: rmse 0.0001638116  max resid 0.000366214 
## ... Similar to previous best
## Run 187 stress 9.982316e-05 
## ... Procrustes: rmse 0.0002050489  max resid 0.0003175541 
## ... Similar to previous best
## Run 188 stress 9.255161e-05 
## ... Procrustes: rmse 0.0001056699  max resid 0.0001813904 
## ... Similar to previous best
## Run 189 stress 9.065116e-05 
## ... Procrustes: rmse 0.0001606798  max resid 0.0003700162 
## ... Similar to previous best
## Run 190 stress 9.984915e-05 
## ... Procrustes: rmse 0.0001501954  max resid 0.0003488 
## ... Similar to previous best
## Run 191 stress 9.95301e-05 
## ... Procrustes: rmse 8.233034e-05  max resid 0.0001343575 
## ... Similar to previous best
## Run 192 stress 9.674278e-05 
## ... Procrustes: rmse 0.0002097614  max resid 0.0004083638 
## ... Similar to previous best
## Run 193 stress 9.909697e-05 
## ... Procrustes: rmse 7.801798e-05  max resid 0.0001040613 
## ... Similar to previous best
## Run 194 stress 9.989604e-05 
## ... Procrustes: rmse 0.0002166092  max resid 0.0004181489 
## ... Similar to previous best
## Run 195 stress 9.414406e-05 
## ... Procrustes: rmse 0.0001700203  max resid 0.0002562637 
## ... Similar to previous best
## Run 196 stress 9.810494e-05 
## ... Procrustes: rmse 8.933915e-05  max resid 0.0001335992 
## ... Similar to previous best
## Run 197 stress 9.683159e-05 
## ... Procrustes: rmse 0.0002102965  max resid 0.0004093869 
## ... Similar to previous best
## Run 198 stress 8.542887e-05 
## ... Procrustes: rmse 0.0001377556  max resid 0.0002705948 
## ... Similar to previous best
## Run 199 stress 9.471475e-05 
## ... Procrustes: rmse 0.0001395959  max resid 0.0002876721 
## ... Similar to previous best
## Run 200 stress 9.639319e-05 
## ... Procrustes: rmse 0.0001902961  max resid 0.0003238857 
## ... Similar to previous best
## Run 201 stress 9.848791e-05 
## ... Procrustes: rmse 0.0001862624  max resid 0.0003602308 
## ... Similar to previous best
## Run 202 stress 9.786057e-05 
## ... Procrustes: rmse 0.0001383271  max resid 0.0002841842 
## ... Similar to previous best
## Run 203 stress 9.702185e-05 
## ... Procrustes: rmse 0.0001476373  max resid 0.0003035513 
## ... Similar to previous best
## Run 204 stress 9.45466e-05 
## ... Procrustes: rmse 0.0001692246  max resid 0.0003707369 
## ... Similar to previous best
## Run 205 stress 9.815412e-05 
## ... Procrustes: rmse 0.0002122656  max resid 0.0004135663 
## ... Similar to previous best
## Run 206 stress 9.137484e-05 
## ... Procrustes: rmse 0.0001340686  max resid 0.0002831459 
## ... Similar to previous best
## Run 207 stress 9.864898e-05 
## ... Procrustes: rmse 0.0001445976  max resid 0.0002211948 
## ... Similar to previous best
## Run 208 stress 9.732649e-05 
## ... Procrustes: rmse 0.0001452494  max resid 0.0002785138 
## ... Similar to previous best
## Run 209 stress 9.808537e-05 
## ... Procrustes: rmse 0.00017807  max resid 0.0003144552 
## ... Similar to previous best
## Run 210 stress 9.616264e-05 
## ... Procrustes: rmse 0.0001731616  max resid 0.0002612108 
## ... Similar to previous best
## Run 211 stress 9.994617e-05 
## ... Procrustes: rmse 0.0001806136  max resid 0.0002700119 
## ... Similar to previous best
## Run 212 stress 9.491968e-05 
## ... Procrustes: rmse 0.0001364872  max resid 0.0002705228 
## ... Similar to previous best
## Run 213 stress 9.690367e-05 
## ... Procrustes: rmse 8.713039e-05  max resid 0.0001363943 
## ... Similar to previous best
## Run 214 stress 9.204142e-05 
## ... Procrustes: rmse 0.0001641414  max resid 0.0003639153 
## ... Similar to previous best
## Run 215 stress 9.94686e-05 
## ... Procrustes: rmse 0.0001575648  max resid 0.0002917066 
## ... Similar to previous best
## Run 216 stress 9.761042e-05 
## ... Procrustes: rmse 0.0001630186  max resid 0.0002407886 
## ... Similar to previous best
## Run 217 stress 9.935223e-05 
## ... Procrustes: rmse 0.0002132202  max resid 0.0004125369 
## ... Similar to previous best
## Run 218 stress 8.852838e-05 
## ... Procrustes: rmse 6.266862e-05  max resid 9.376996e-05 
## ... Similar to previous best
## Run 219 stress 9.563368e-05 
## ... Procrustes: rmse 0.0001862794  max resid 0.0003480467 
## ... Similar to previous best
## Run 220 stress 9.665134e-05 
## ... Procrustes: rmse 8.976841e-05  max resid 0.0001482775 
## ... Similar to previous best
## Run 221 stress 9.030292e-05 
## ... Procrustes: rmse 0.0001062251  max resid 0.0001882333 
## ... Similar to previous best
## Run 222 stress 9.617672e-05 
## ... Procrustes: rmse 8.527839e-05  max resid 0.0001166376 
## ... Similar to previous best
## Run 223 stress 9.337265e-05 
## ... Procrustes: rmse 0.0001640342  max resid 0.0003703393 
## ... Similar to previous best
## Run 224 stress 9.897746e-05 
## ... Procrustes: rmse 0.0001378459  max resid 0.0002055762 
## ... Similar to previous best
## Run 225 stress 9.721428e-05 
## ... Procrustes: rmse 0.0001383548  max resid 0.0002614615 
## ... Similar to previous best
## Run 226 stress 9.519014e-05 
## ... Procrustes: rmse 0.000167638  max resid 0.0003549047 
## ... Similar to previous best
## Run 227 stress 9.217048e-05 
## ... Procrustes: rmse 0.0001939666  max resid 0.0002979776 
## ... Similar to previous best
## Run 228 stress 9.316262e-05 
## ... Procrustes: rmse 0.0001958077  max resid 0.0003009132 
## ... Similar to previous best
## Run 229 stress 9.727566e-05 
## ... Procrustes: rmse 7.711844e-05  max resid 0.0001126741 
## ... Similar to previous best
## Run 230 stress 9.906234e-05 
## ... Procrustes: rmse 0.0001776073  max resid 0.000382303 
## ... Similar to previous best
## Run 231 stress 8.919357e-05 
## ... Procrustes: rmse 0.0001301059  max resid 0.0002766554 
## ... Similar to previous best
## Run 232 stress 9.845351e-05 
## ... Procrustes: rmse 0.0002075692  max resid 0.0003123867 
## ... Similar to previous best
## Run 233 stress 9.842938e-05 
## ... Procrustes: rmse 0.0001351059  max resid 0.0002829482 
## ... Similar to previous best
## Run 234 stress 8.908371e-05 
## ... Procrustes: rmse 0.0001441568  max resid 0.0002784204 
## ... Similar to previous best
## Run 235 stress 8.789872e-05 
## ... Procrustes: rmse 7.29729e-05  max resid 0.0001453527 
## ... Similar to previous best
## Run 236 stress 9.066367e-05 
## ... Procrustes: rmse 0.0001027613  max resid 0.0001884808 
## ... Similar to previous best
## Run 237 stress 8.815407e-05 
## ... Procrustes: rmse 0.0001613188  max resid 0.0002937716 
## ... Similar to previous best
## Run 238 stress 8.232904e-05 
## ... Procrustes: rmse 0.0001600724  max resid 0.0003474257 
## ... Similar to previous best
## Run 239 stress 9.643298e-05 
## ... Procrustes: rmse 8.505089e-05  max resid 0.0001272131 
## ... Similar to previous best
## Run 240 stress 7.725777e-05 
## ... Procrustes: rmse 0.0001343733  max resid 0.0002104874 
## ... Similar to previous best
## Run 241 stress 9.884858e-05 
## ... Procrustes: rmse 0.0001792229  max resid 0.0002684442 
## ... Similar to previous best
## Run 242 stress 9.110857e-05 
## ... Procrustes: rmse 0.0001580052  max resid 0.0002379016 
## ... Similar to previous best
## Run 243 stress 9.65178e-05 
## ... Procrustes: rmse 0.0001340793  max resid 0.0002824655 
## ... Similar to previous best
## Run 244 stress 9.824745e-05 
## ... Procrustes: rmse 0.0001242476  max resid 0.0002720648 
## ... Similar to previous best
## Run 245 stress 9.555113e-05 
## ... Procrustes: rmse 0.0001559708  max resid 0.0002880642 
## ... Similar to previous best
## Run 246 stress 9.692951e-05 
## ... Procrustes: rmse 0.0001950653  max resid 0.0003000802 
## ... Similar to previous best
## Run 247 stress 9.369871e-05 
## ... Procrustes: rmse 0.0001125955  max resid 0.0002546192 
## ... Similar to previous best
## Run 248 stress 9.95776e-05 
## ... Procrustes: rmse 0.000211441  max resid 0.0004119085 
## ... Similar to previous best
## Run 249 stress 9.978512e-05 
## ... Procrustes: rmse 0.0001789701  max resid 0.0003472866 
## ... Similar to previous best
## Run 250 stress 9.742484e-05 
## ... Procrustes: rmse 0.0001067469  max resid 0.000215352 
## ... Similar to previous best
## Run 251 stress 9.70934e-05 
## ... Procrustes: rmse 0.0001745242  max resid 0.0003758538 
## ... Similar to previous best
## Run 252 stress 9.953681e-05 
## ... Procrustes: rmse 0.0002020915  max resid 0.0003144697 
## ... Similar to previous best
## Run 253 stress 9.978806e-05 
## ... Procrustes: rmse 8.636001e-05  max resid 0.0001211818 
## ... Similar to previous best
## Run 254 stress 9.715337e-05 
## ... Procrustes: rmse 0.0001642705  max resid 0.0002436541 
## ... Similar to previous best
## Run 255 stress 9.0613e-05 
## ... Procrustes: rmse 0.0001913884  max resid 0.0002965831 
## ... Similar to previous best
## Run 256 stress 9.023775e-05 
## ... Procrustes: rmse 0.0001846691  max resid 0.0002972936 
## ... Similar to previous best
## Run 257 stress 9.548876e-05 
## ... Procrustes: rmse 8.439369e-05  max resid 0.0001261588 
## ... Similar to previous best
## Run 258 stress 9.452489e-05 
## ... Procrustes: rmse 0.0001853848  max resid 0.0003785733 
## ... Similar to previous best
## Run 259 stress 8.930189e-05 
## ... Procrustes: rmse 0.0001223704  max resid 0.0002720851 
## ... Similar to previous best
## Run 260 stress 9.938373e-05 
## ... Procrustes: rmse 0.0001394141  max resid 0.000282937 
## ... Similar to previous best
## Run 261 stress 9.859782e-05 
## ... Procrustes: rmse 0.0001983744  max resid 0.0003110604 
## ... Similar to previous best
## Run 262 stress 9.682683e-05 
## ... Procrustes: rmse 0.0001737424  max resid 0.0003760314 
## ... Similar to previous best
## Run 263 stress 9.850561e-05 
## ... Procrustes: rmse 9.151926e-05  max resid 0.0001336777 
## ... Similar to previous best
## Run 264 stress 9.593446e-05 
## ... Procrustes: rmse 0.0001186417  max resid 0.0002026338 
## ... Similar to previous best
## Run 265 stress 8.805893e-05 
## ... Procrustes: rmse 0.0001779271  max resid 0.0003638781 
## ... Similar to previous best
## Run 266 stress 8.95924e-05 
## ... Procrustes: rmse 6.864765e-05  max resid 0.0001045407 
## ... Similar to previous best
## Run 267 stress 9.99078e-05 
## ... Procrustes: rmse 0.0002027203  max resid 0.000348209 
## ... Similar to previous best
## Run 268 stress 8.868821e-05 
## ... Procrustes: rmse 0.000107469  max resid 0.0002904491 
## ... Similar to previous best
## Run 269 stress 9.826966e-05 
## ... Procrustes: rmse 0.0001939581  max resid 0.0003076688 
## ... Similar to previous best
## Run 270 stress 9.695433e-05 
## ... Procrustes: rmse 0.0001783977  max resid 0.0003162576 
## ... Similar to previous best
## Run 271 stress 9.382642e-05 
## ... Procrustes: rmse 0.0001596477  max resid 0.0003121032 
## ... Similar to previous best
## Run 272 stress 9.250347e-05 
## ... Procrustes: rmse 7.498992e-05  max resid 0.0001133578 
## ... Similar to previous best
## Run 273 stress 9.867757e-05 
## ... Procrustes: rmse 0.0001826593  max resid 0.0002857437 
## ... Similar to previous best
## Run 274 stress 9.892953e-05 
## ... Procrustes: rmse 0.0002022377  max resid 0.0003074436 
## ... Similar to previous best
## Run 275 stress 9.894395e-05 
## ... Procrustes: rmse 9.119997e-05  max resid 0.0001310863 
## ... Similar to previous best
## Run 276 stress 9.272054e-05 
## ... Procrustes: rmse 0.0001842438  max resid 0.0003443769 
## ... Similar to previous best
## Run 277 stress 9.32195e-05 
## ... Procrustes: rmse 0.0001971618  max resid 0.0003949427 
## ... Similar to previous best
## Run 278 stress 7.857267e-05 
## ... Procrustes: rmse 0.0001524939  max resid 0.0002954467 
## ... Similar to previous best
## Run 279 stress 8.856891e-05 
## ... Procrustes: rmse 0.0001580514  max resid 0.00036899 
## ... Similar to previous best
## Run 280 stress 9.761354e-05 
## ... Procrustes: rmse 0.0001740187  max resid 0.0003752507 
## ... Similar to previous best
## Run 281 stress 9.649101e-05 
## ... Procrustes: rmse 0.0001501365  max resid 0.0002816904 
## ... Similar to previous best
## Run 282 stress 9.782469e-05 
## ... Procrustes: rmse 0.0001753778  max resid 0.0002631359 
## ... Similar to previous best
## Run 283 stress 9.761624e-05 
## ... Procrustes: rmse 0.0001612246  max resid 0.0002658206 
## ... Similar to previous best
## Run 284 stress 9.76436e-05 
## ... Procrustes: rmse 0.0001696016  max resid 0.0003676179 
## ... Similar to previous best
## Run 285 stress 9.017158e-05 
## ... Procrustes: rmse 0.0001018902  max resid 0.0001660503 
## ... Similar to previous best
## Run 286 stress 9.425042e-05 
## ... Procrustes: rmse 8.07338e-05  max resid 0.0001209334 
## ... Similar to previous best
## Run 287 stress 9.237203e-05 
## ... Procrustes: rmse 0.0001350523  max resid 0.0002782397 
## ... Similar to previous best
## Run 288 stress 7.399322e-05 
## ... Procrustes: rmse 0.0001112353  max resid 0.0002295932 
## ... Similar to previous best
## Run 289 stress 9.302562e-05 
## ... Procrustes: rmse 0.0001245062  max resid 0.0002358014 
## ... Similar to previous best
## Run 290 stress 9.19289e-05 
## ... Procrustes: rmse 0.0001658632  max resid 0.0002519101 
## ... Similar to previous best
## Run 291 stress 9.948126e-05 
## ... Procrustes: rmse 0.0001096748  max resid 0.0002187481 
## ... Similar to previous best
## Run 292 stress 0.2413829 
## Run 293 stress 9.106325e-05 
## ... Procrustes: rmse 0.0001585332  max resid 0.0003417617 
## ... Similar to previous best
## Run 294 stress 0.2362213 
## Run 295 stress 8.776582e-05 
## ... Procrustes: rmse 0.0001554692  max resid 0.0002358077 
## ... Similar to previous best
## Run 296 stress 9.971179e-05 
## ... Procrustes: rmse 0.000194608  max resid 0.0003822728 
## ... Similar to previous best
## Run 297 stress 8.8684e-05 
## ... Procrustes: rmse 0.0001202957  max resid 0.0002665758 
## ... Similar to previous best
## Run 298 stress 9.844289e-05 
## ... Procrustes: rmse 0.0002076218  max resid 0.0003123815 
## ... Similar to previous best
## Run 299 stress 9.527591e-05 
## ... Procrustes: rmse 7.683521e-05  max resid 0.0001306921 
## ... Similar to previous best
## Run 300 stress 9.635964e-05 
## ... Procrustes: rmse 8.392412e-05  max resid 0.0001370699 
## ... Similar to previous best
## Run 301 stress 8.788193e-05 
## ... Procrustes: rmse 0.0001783962  max resid 0.000291938 
## ... Similar to previous best
## Run 302 stress 9.389951e-05 
## ... Procrustes: rmse 0.0001669844  max resid 0.0003484226 
## ... Similar to previous best
## Run 303 stress 9.564134e-05 
## ... Procrustes: rmse 0.0001864473  max resid 0.0003017745 
## ... Similar to previous best
## Run 304 stress 9.353528e-05 
## ... Procrustes: rmse 0.0001863876  max resid 0.0003475942 
## ... Similar to previous best
## Run 305 stress 9.587573e-05 
## ... Procrustes: rmse 0.0001608784  max resid 0.0002387535 
## ... Similar to previous best
## Run 306 stress 9.842397e-05 
## ... Procrustes: rmse 9.059614e-05  max resid 0.0001388117 
## ... Similar to previous best
## Run 307 stress 9.834342e-05 
## ... Procrustes: rmse 0.0001594874  max resid 0.0002947556 
## ... Similar to previous best
## Run 308 stress 7.710227e-05 
## ... Procrustes: rmse 0.0001103883  max resid 0.0002270064 
## ... Similar to previous best
## Run 309 stress 9.10632e-05 
## ... Procrustes: rmse 0.0001493198  max resid 0.0003222154 
## ... Similar to previous best
## Run 310 stress 9.347536e-05 
## ... Procrustes: rmse 0.0001978099  max resid 0.0003027538 
## ... Similar to previous best
## Run 311 stress 9.653533e-05 
## ... Procrustes: rmse 0.0002098494  max resid 0.0004095037 
## ... Similar to previous best
## Run 312 stress 9.252941e-05 
## ... Procrustes: rmse 0.0001752791  max resid 0.0003446363 
## ... Similar to previous best
## Run 313 stress 9.550312e-05 
## ... Procrustes: rmse 0.0001939011  max resid 0.0003076178 
## ... Similar to previous best
## Run 314 stress 9.757537e-05 
## ... Procrustes: rmse 0.0001068062  max resid 0.0002151611 
## ... Similar to previous best
## Run 315 stress 0.2413829 
## Run 316 stress 9.37239e-05 
## ... Procrustes: rmse 0.0001436658  max resid 0.0002644796 
## ... Similar to previous best
## Run 317 stress 9.764131e-05 
## ... Procrustes: rmse 0.0001508454  max resid 0.0002363167 
## ... Similar to previous best
## Run 318 stress 9.693641e-05 
## ... Procrustes: rmse 0.0001493377  max resid 0.0002363617 
## ... Similar to previous best
## Run 319 stress 9.788739e-05 
## ... Procrustes: rmse 0.0001726819  max resid 0.0003756632 
## ... Similar to previous best
## Run 320 stress 9.506552e-05 
## ... Procrustes: rmse 0.0001474888  max resid 0.0002693228 
## ... Similar to previous best
## Run 321 stress 8.565255e-05 
## ... Procrustes: rmse 0.0001588115  max resid 0.0003009284 
## ... Similar to previous best
## Run 322 stress 0.258082 
## Run 323 stress 7.43926e-05 
## ... Procrustes: rmse 0.0001168565  max resid 0.0002376107 
## ... Similar to previous best
## Run 324 stress 9.909087e-05 
## ... Procrustes: rmse 0.0001791767  max resid 0.0002698163 
## ... Similar to previous best
## Run 325 stress 9.608e-05 
## ... Procrustes: rmse 0.0001419138  max resid 0.0002893174 
## ... Similar to previous best
## Run 326 stress 9.659751e-05 
## ... Procrustes: rmse 0.0001940931  max resid 0.0003583606 
## ... Similar to previous best
## Run 327 stress 7.832844e-05 
## ... Procrustes: rmse 0.0001577321  max resid 0.0002699558 
## ... Similar to previous best
## Run 328 stress 9.748012e-05 
## ... Procrustes: rmse 0.0001956473  max resid 0.0003596681 
## ... Similar to previous best
## Run 329 stress 8.980489e-05 
## ... Procrustes: rmse 0.0001272191  max resid 0.0002573897 
## ... Similar to previous best
## Run 330 stress 9.18488e-05 
## ... Procrustes: rmse 7.208095e-05  max resid 0.000109712 
## ... Similar to previous best
## Run 331 stress 9.74839e-05 
## ... Procrustes: rmse 8.815276e-05  max resid 0.0001268098 
## ... Similar to previous best
## Run 332 stress 9.504634e-05 
## ... Procrustes: rmse 0.0001493556  max resid 0.0002763198 
## ... Similar to previous best
## Run 333 stress 7.93571e-05 
## ... Procrustes: rmse 0.0001415663  max resid 0.0003014607 
## ... Similar to previous best
## Run 334 stress 9.332341e-05 
## ... Procrustes: rmse 0.0001376883  max resid 0.0002866662 
## ... Similar to previous best
## Run 335 stress 0.2412264 
## Run 336 stress 9.928861e-05 
## ... Procrustes: rmse 0.0001894097  max resid 0.0003495319 
## ... Similar to previous best
## Run 337 stress 9.900622e-05 
## ... Procrustes: rmse 0.0001964591  max resid 0.0003111688 
## ... Similar to previous best
## Run 338 stress 8.77415e-05 
## ... Procrustes: rmse 0.0001112715  max resid 0.0002596486 
## ... Similar to previous best
## Run 339 stress 8.839874e-05 
## ... Procrustes: rmse 0.0001277391  max resid 0.0002743786 
## ... Similar to previous best
## Run 340 stress 9.70334e-05 
## ... Procrustes: rmse 0.0002090475  max resid 0.000407888 
## ... Similar to previous best
## Run 341 stress 9.540678e-05 
## ... Procrustes: rmse 0.000159957  max resid 0.0002369689 
## ... Similar to previous best
## Run 342 stress 9.069802e-05 
## ... Procrustes: rmse 0.0001579568  max resid 0.0002980757 
## ... Similar to previous best
## Run 343 stress 9.287998e-05 
## ... Procrustes: rmse 0.0001398183  max resid 0.0002611743 
## ... Similar to previous best
## Run 344 stress 9.951363e-05 
## ... Procrustes: rmse 0.0002040346  max resid 0.0003165005 
## ... Similar to previous best
## Run 345 stress 9.025349e-05 
## ... Procrustes: rmse 9.348131e-05  max resid 0.0001955362 
## ... Similar to previous best
## Run 346 stress 9.928692e-05 
## ... Procrustes: rmse 7.43263e-05  max resid 0.0001283727 
## ... Similar to previous best
## Run 347 stress 8.732146e-05 
## ... Procrustes: rmse 0.0001528013  max resid 0.0003335451 
## ... Similar to previous best
## Run 348 stress 9.957084e-05 
## ... Procrustes: rmse 0.0001981413  max resid 0.0003590846 
## ... Similar to previous best
## Run 349 stress 9.649598e-05 
## ... Procrustes: rmse 0.0002085979  max resid 0.0004073659 
## ... Similar to previous best
## Run 350 stress 9.977386e-05 
## ... Procrustes: rmse 0.0001132444  max resid 0.0002238605 
## ... Similar to previous best
## Run 351 stress 9.610045e-05 
## ... Procrustes: rmse 0.0001608522  max resid 0.0003344869 
## ... Similar to previous best
## Run 352 stress 9.486938e-05 
## ... Procrustes: rmse 0.000140083  max resid 0.0002893732 
## ... Similar to previous best
## Run 353 stress 9.573963e-05 
## ... Procrustes: rmse 8.543312e-05  max resid 0.0001266222 
## ... Similar to previous best
## Run 354 stress 9.949364e-05 
## ... Procrustes: rmse 8.648967e-05  max resid 0.0001389411 
## ... Similar to previous best
## Run 355 stress 9.629904e-05 
## ... Procrustes: rmse 0.0001560609  max resid 0.0002909989 
## ... Similar to previous best
## Run 356 stress 9.56336e-05 
## ... Procrustes: rmse 0.0001709685  max resid 0.0003742257 
## ... Similar to previous best
## Run 357 stress 9.334532e-05 
## ... Procrustes: rmse 0.0001371416  max resid 0.0002840583 
## ... Similar to previous best
## Run 358 stress 9.515809e-05 
## ... Procrustes: rmse 0.0001895862  max resid 0.0003777044 
## ... Similar to previous best
## Run 359 stress 9.5863e-05 
## ... Procrustes: rmse 8.528372e-05  max resid 0.0001236875 
## ... Similar to previous best
## Run 360 stress 9.70855e-05 
## ... Procrustes: rmse 0.0001035508  max resid 0.0002093415 
## ... Similar to previous best
## Run 361 stress 9.569624e-05 
## ... Procrustes: rmse 0.0001396848  max resid 0.0002890094 
## ... Similar to previous best
## Run 362 stress 9.974058e-05 
## ... Procrustes: rmse 0.0001809849  max resid 0.0002708522 
## ... Similar to previous best
## Run 363 stress 9.017594e-05 
## ... Procrustes: rmse 0.0001321715  max resid 0.0002826553 
## ... Similar to previous best
## Run 364 stress 7.919841e-05 
## ... Procrustes: rmse 0.0001684874  max resid 0.0003461837 
## ... Similar to previous best
## Run 365 stress 8.44418e-05 
## ... Procrustes: rmse 0.0001149457  max resid 0.0002590914 
## ... Similar to previous best
## Run 366 stress 9.203162e-05 
## ... Procrustes: rmse 8.113982e-05  max resid 0.0001418447 
## ... Similar to previous best
## Run 367 stress 8.791133e-05 
## ... Procrustes: rmse 6.707957e-05  max resid 9.78424e-05 
## ... Similar to previous best
## Run 368 stress 9.272559e-05 
## ... Procrustes: rmse 0.000188919  max resid 0.0003020368 
## ... Similar to previous best
## Run 369 stress 9.989945e-05 
## ... Procrustes: rmse 0.0001225069  max resid 0.0002437479 
## ... Similar to previous best
## Run 370 stress 9.528139e-05 
## ... Procrustes: rmse 0.0001046894  max resid 0.0002126933 
## ... Similar to previous best
## Run 371 stress 9.870351e-05 
## ... Procrustes: rmse 0.0001995858  max resid 0.0003889363 
## ... Similar to previous best
## Run 372 stress 9.603891e-05 
## ... Procrustes: rmse 0.0001567495  max resid 0.0002923423 
## ... Similar to previous best
## Run 373 stress 9.800347e-05 
## ... Procrustes: rmse 0.0002124219  max resid 0.0004131861 
## ... Similar to previous best
## Run 374 stress 9.748779e-05 
## ... Procrustes: rmse 0.00015903  max resid 0.0002463016 
## ... Similar to previous best
## Run 375 stress 9.023961e-05 
## ... Procrustes: rmse 0.0001135154  max resid 0.0002255979 
## ... Similar to previous best
## Run 376 stress 7.874856e-05 
## ... Procrustes: rmse 0.0001277825  max resid 0.0002376711 
## ... Similar to previous best
## Run 377 stress 8.430723e-05 
## ... Procrustes: rmse 0.000119852  max resid 0.0002543975 
## ... Similar to previous best
## Run 378 stress 9.436495e-05 
## ... Procrustes: rmse 0.0001380622  max resid 0.0002863275 
## ... Similar to previous best
## Run 379 stress 9.877504e-05 
## ... Procrustes: rmse 0.0001576397  max resid 0.0002970647 
## ... Similar to previous best
## Run 380 stress 0.206342 
## Run 381 stress 7.526447e-05 
## ... Procrustes: rmse 0.0001476714  max resid 0.0002589541 
## ... Similar to previous best
## Run 382 stress 9.402078e-05 
## ... Procrustes: rmse 0.0001358064  max resid 0.0002709644 
## ... Similar to previous best
## Run 383 stress 9.772209e-05 
## ... Procrustes: rmse 0.0001923718  max resid 0.0003067239 
## ... Similar to previous best
## Run 384 stress 9.138139e-05 
## ... Procrustes: rmse 0.000132066  max resid 0.0002477604 
## ... Similar to previous best
## Run 385 stress 9.466599e-05 
## ... Procrustes: rmse 0.0002048771  max resid 0.0004012658 
## ... Similar to previous best
## Run 386 stress 9.438219e-05 
## ... Procrustes: rmse 0.0001386446  max resid 0.0002863135 
## ... Similar to previous best
## Run 387 stress 9.278885e-05 
## ... Procrustes: rmse 0.0001116347  max resid 0.0001894896 
## ... Similar to previous best
## Run 388 stress 9.45473e-05 
## ... Procrustes: rmse 0.0001688906  max resid 0.0003695458 
## ... Similar to previous best
## Run 389 stress 9.564803e-05 
## ... Procrustes: rmse 0.0001483931  max resid 0.000273127 
## ... Similar to previous best
## Run 390 stress 9.883374e-05 
## ... Procrustes: rmse 0.0002142241  max resid 0.0004146502 
## ... Similar to previous best
## Run 391 stress 9.818496e-05 
## ... Procrustes: rmse 0.0001587761  max resid 0.0002923233 
## ... Similar to previous best
## Run 392 stress 9.934253e-05 
## ... Procrustes: rmse 0.0002009591  max resid 0.0003912733 
## ... Similar to previous best
## Run 393 stress 9.697622e-05 
## ... Procrustes: rmse 0.0001902268  max resid 0.0003821275 
## ... Similar to previous best
## Run 394 stress 9.796724e-05 
## ... Procrustes: rmse 0.0002108531  max resid 0.0004098341 
## ... Similar to previous best
## Run 395 stress 8.598815e-05 
## ... Procrustes: rmse 0.0001674818  max resid 0.0002834006 
## ... Similar to previous best
## Run 396 stress 9.419196e-05 
## ... Procrustes: rmse 0.0001661135  max resid 0.0003654934 
## ... Similar to previous best
## Run 397 stress 9.108324e-05 
## ... Procrustes: rmse 0.0001881479  max resid 0.000292385 
## ... Similar to previous best
## Run 398 stress 9.95533e-05 
## ... Procrustes: rmse 9.057585e-05  max resid 0.0001349164 
## ... Similar to previous best
## Run 399 stress 9.907032e-05 
## ... Procrustes: rmse 8.741693e-05  max resid 0.0001506989 
## ... Similar to previous best
## Run 400 stress 8.805184e-05 
## ... Procrustes: rmse 9.154609e-05  max resid 0.00019498 
## ... Similar to previous best
## Run 401 stress 9.251812e-05 
## ... Procrustes: rmse 0.0001604374  max resid 0.0003453267 
## ... Similar to previous best
## Run 402 stress 8.91042e-05 
## ... Procrustes: rmse 0.0001330699  max resid 0.0002532575 
## ... Similar to previous best
## Run 403 stress 9.737128e-05 
## ... Procrustes: rmse 8.907709e-05  max resid 0.0001301345 
## ... Similar to previous best
## Run 404 stress 9.986849e-05 
## ... Procrustes: rmse 0.0001814541  max resid 0.0002714225 
## ... Similar to previous best
## Run 405 stress 9.53488e-05 
## ... Procrustes: rmse 0.0001522064  max resid 0.0002822472 
## ... Similar to previous best
## Run 406 stress 9.70838e-05 
## ... Procrustes: rmse 6.822639e-05  max resid 8.961092e-05 
## ... Similar to previous best
## Run 407 stress 9.936733e-05 
## ... Procrustes: rmse 8.852937e-05  max resid 0.0001485033 
## ... Similar to previous best
## Run 408 stress 8.546814e-05 
## ... Procrustes: rmse 0.0001696525  max resid 0.0003148595 
## ... Similar to previous best
## Run 409 stress 9.843027e-05 
## ... Procrustes: rmse 0.0001471219  max resid 0.0002964483 
## ... Similar to previous best
## Run 410 stress 9.411025e-05 
## ... Procrustes: rmse 0.0001682213  max resid 0.0003393898 
## ... Similar to previous best
## Run 411 stress 7.255365e-05 
## ... Procrustes: rmse 0.0001119342  max resid 0.0002323318 
## ... Similar to previous best
## Run 412 stress 9.662773e-05 
## ... Procrustes: rmse 0.0001488503  max resid 0.0002332396 
## ... Similar to previous best
## Run 413 stress 9.953934e-05 
## ... Procrustes: rmse 0.0001796876  max resid 0.0002685796 
## ... Similar to previous best
## Run 414 stress 9.184751e-05 
## ... Procrustes: rmse 0.0001303774  max resid 0.0002810625 
## ... Similar to previous best
## Run 415 stress 9.606244e-05 
## ... Procrustes: rmse 0.000162431  max resid 0.0002429907 
## ... Similar to previous best
## Run 416 stress 9.628232e-05 
## ... Procrustes: rmse 0.0001964965  max resid 0.0003094334 
## ... Similar to previous best
## Run 417 stress 9.272941e-05 
## ... Procrustes: rmse 7.830785e-05  max resid 0.0001152184 
## ... Similar to previous best
## Run 418 stress 9.660613e-05 
## ... Procrustes: rmse 0.0001548436  max resid 0.0003478644 
## ... Similar to previous best
## Run 419 stress 9.465681e-05 
## ... Procrustes: rmse 0.0001640027  max resid 0.0003607148 
## ... Similar to previous best
## Run 420 stress 0.2362213 
## Run 421 stress 9.892164e-05 
## ... Procrustes: rmse 0.0002133294  max resid 0.0004132873 
## ... Similar to previous best
## Run 422 stress 9.858307e-05 
## ... Procrustes: rmse 0.0001771978  max resid 0.0003789752 
## ... Similar to previous best
## Run 423 stress 9.90203e-05 
## ... Procrustes: rmse 0.0001669308  max resid 0.0002463802 
## ... Similar to previous best
## Run 424 stress 9.9235e-05 
## ... Procrustes: rmse 0.0002064352  max resid 0.0003127633 
## ... Similar to previous best
## Run 425 stress 9.067423e-05 
## ... Procrustes: rmse 7.28319e-05  max resid 0.0001064099 
## ... Similar to previous best
## Run 426 stress 8.844744e-05 
## ... Procrustes: rmse 0.0001675131  max resid 0.0003545425 
## ... Similar to previous best
## Run 427 stress 9.206051e-05 
## ... Procrustes: rmse 0.0001525924  max resid 0.0002256992 
## ... Similar to previous best
## Run 428 stress 8.416029e-05 
## ... Procrustes: rmse 5.86763e-05  max resid 8.608442e-05 
## ... Similar to previous best
## Run 429 stress 9.7742e-05 
## ... Procrustes: rmse 0.0001768964  max resid 0.0002667296 
## ... Similar to previous best
## Run 430 stress 9.994344e-05 
## ... Procrustes: rmse 9.282862e-05  max resid 0.0001334016 
## ... Similar to previous best
## Run 431 stress 8.306354e-05 
## ... Procrustes: rmse 7.739677e-05  max resid 0.0001723671 
## ... Similar to previous best
## Run 432 stress 9.432957e-05 
## ... Procrustes: rmse 0.0001332386  max resid 0.0002172018 
## ... Similar to previous best
## Run 433 stress 8.91477e-05 
## ... Procrustes: rmse 0.0001946172  max resid 0.0003895407 
## ... Similar to previous best
## Run 434 stress 8.876677e-05 
## ... Procrustes: rmse 0.0001736806  max resid 0.0003166373 
## ... Similar to previous best
## Run 435 stress 9.582496e-05 
## ... Procrustes: rmse 0.0001431394  max resid 0.0002781267 
## ... Similar to previous best
## Run 436 stress 9.575671e-05 
## ... Procrustes: rmse 0.0001948126  max resid 0.0003095726 
## ... Similar to previous best
## Run 437 stress 9.677415e-05 
## ... Procrustes: rmse 0.0001640362  max resid 0.000243465 
## ... Similar to previous best
## Run 438 stress 9.622442e-05 
## ... Procrustes: rmse 0.0002084545  max resid 0.0004085293 
## ... Similar to previous best
## Run 439 stress 9.795657e-05 
## ... Procrustes: rmse 0.0001697194  max resid 0.0003574807 
## ... Similar to previous best
## Run 440 stress 9.645007e-05 
## ... Procrustes: rmse 0.0001704963  max resid 0.0003706851 
## ... Similar to previous best
## Run 441 stress 9.829303e-05 
## ... Procrustes: rmse 9.14681e-05  max resid 0.0001342685 
## ... Similar to previous best
## Run 442 stress 9.51572e-05 
## ... Procrustes: rmse 0.0001520497  max resid 0.0002861823 
## ... Similar to previous best
## Run 443 stress 9.733995e-05 
## ... Procrustes: rmse 0.000125576  max resid 0.0002716273 
## ... Similar to previous best
## Run 444 stress 9.80168e-05 
## ... Procrustes: rmse 8.839063e-05  max resid 0.0001229152 
## ... Similar to previous best
## Run 445 stress 9.742132e-05 
## ... Procrustes: rmse 0.0001084492  max resid 0.0002175801 
## ... Similar to previous best
## Run 446 stress 9.228873e-05 
## ... Procrustes: rmse 7.629165e-05  max resid 0.0001115447 
## ... Similar to previous best
## Run 447 stress 9.712864e-05 
## ... Procrustes: rmse 0.0001733898  max resid 0.0003906985 
## ... Similar to previous best
## Run 448 stress 9.722248e-05 
## ... Procrustes: rmse 0.0001564026  max resid 0.0002495142 
## ... Similar to previous best
## Run 449 stress 9.827365e-05 
## ... Procrustes: rmse 0.0001623636  max resid 0.0002987496 
## ... Similar to previous best
## Run 450 stress 9.878593e-05 
## ... Procrustes: rmse 0.0001742075  max resid 0.0003909751 
## ... Similar to previous best
## Run 451 stress 9.565911e-05 
## ... Procrustes: rmse 0.0001926431  max resid 0.000358538 
## ... Similar to previous best
## Run 452 stress 9.649035e-05 
## ... Procrustes: rmse 0.0001932307  max resid 0.0003548411 
## ... Similar to previous best
## Run 453 stress 9.56517e-05 
## ... Procrustes: rmse 0.000141805  max resid 0.0002923333 
## ... Similar to previous best
## Run 454 stress 9.853842e-05 
## ... Procrustes: rmse 7.921936e-05  max resid 0.000111707 
## ... Similar to previous best
## Run 455 stress 9.454624e-05 
## ... Procrustes: rmse 9.38783e-05  max resid 0.000170782 
## ... Similar to previous best
## Run 456 stress 9.554215e-05 
## ... Procrustes: rmse 0.0001696539  max resid 0.0003694819 
## ... Similar to previous best
## Run 457 stress 9.220582e-05 
## ... Procrustes: rmse 0.0001467506  max resid 0.0002812787 
## ... Similar to previous best
## Run 458 stress 9.774267e-05 
## ... Procrustes: rmse 0.0001503274  max resid 0.0002317597 
## ... Similar to previous best
## Run 459 stress 9.565204e-05 
## ... Procrustes: rmse 0.0002069876  max resid 0.0004059171 
## ... Similar to previous best
## Run 460 stress 9.957229e-05 
## ... Procrustes: rmse 9.261815e-05  max resid 0.0001376866 
## ... Similar to previous best
## Run 461 stress 9.659137e-05 
## ... Procrustes: rmse 0.0001843862  max resid 0.000361496 
## ... Similar to previous best
## Run 462 stress 9.552301e-05 
## ... Procrustes: rmse 0.0001714996  max resid 0.0003736441 
## ... Similar to previous best
## Run 463 stress 9.054493e-05 
## ... Procrustes: rmse 9.609535e-05  max resid 0.0002013467 
## ... Similar to previous best
## Run 464 stress 9.562909e-05 
## ... Procrustes: rmse 0.0001029734  max resid 0.0002070872 
## ... Similar to previous best
## Run 465 stress 9.663014e-05 
## ... Procrustes: rmse 0.0002096859  max resid 0.0004093251 
## ... Similar to previous best
## Run 466 stress 9.68083e-05 
## ... Procrustes: rmse 0.0001367625  max resid 0.0002810355 
## ... Similar to previous best
## Run 467 stress 9.246838e-05 
## ... Procrustes: rmse 0.0001422745  max resid 0.0002656499 
## ... Similar to previous best
## Run 468 stress 9.664999e-05 
## ... Procrustes: rmse 9.352999e-05  max resid 0.0001646234 
## ... Similar to previous best
## Run 469 stress 9.523562e-05 
## ... Procrustes: rmse 0.0001938598  max resid 0.000306185 
## ... Similar to previous best
## Run 470 stress 9.683772e-05 
## ... Procrustes: rmse 8.221572e-05  max resid 0.000126062 
## ... Similar to previous best
## Run 471 stress 8.302796e-05 
## ... Procrustes: rmse 0.0001362743  max resid 0.0002527815 
## ... Similar to previous best
## Run 472 stress 9.537129e-05 
## ... Procrustes: rmse 0.0001926332  max resid 0.0003066222 
## ... Similar to previous best
## Run 473 stress 9.738347e-05 
## ... Procrustes: rmse 8.589593e-05  max resid 0.0001192907 
## ... Similar to previous best
## Run 474 stress 9.522971e-05 
## ... Procrustes: rmse 0.000153471  max resid 0.0002912599 
## ... Similar to previous best
## Run 475 stress 9.280134e-05 
## ... Procrustes: rmse 0.0001608106  max resid 0.0003566979 
## ... Similar to previous best
## Run 476 stress 9.093503e-05 
## ... Procrustes: rmse 0.0001570231  max resid 0.0003187335 
## ... Similar to previous best
## Run 477 stress 9.628882e-05 
## ... Procrustes: rmse 6.68909e-05  max resid 0.0001057053 
## ... Similar to previous best
## Run 478 stress 9.494782e-05 
## ... Procrustes: rmse 0.000127635  max resid 0.0002788122 
## ... Similar to previous best
## Run 479 stress 9.575296e-05 
## ... Procrustes: rmse 0.0001729794  max resid 0.0002609475 
## ... Similar to previous best
## Run 480 stress 9.471887e-05 
## ... Procrustes: rmse 0.0001796459  max resid 0.0003516203 
## ... Similar to previous best
## Run 481 stress 9.355922e-05 
## ... Procrustes: rmse 0.000196569  max resid 0.0003029581 
## ... Similar to previous best
## Run 482 stress 8.653435e-05 
## ... Procrustes: rmse 0.0001563891  max resid 0.0003111384 
## ... Similar to previous best
## Run 483 stress 8.909799e-05 
## ... Procrustes: rmse 0.00019381  max resid 0.0003891483 
## ... Similar to previous best
## Run 484 stress 9.121985e-05 
## ... Procrustes: rmse 0.0001928804  max resid 0.0002989936 
## ... Similar to previous best
## Run 485 stress 9.428498e-05 
## ... Procrustes: rmse 0.0001810923  max resid 0.0002607777 
## ... Similar to previous best
## Run 486 stress 9.590099e-05 
## ... Procrustes: rmse 0.0002079875  max resid 0.0004066051 
## ... Similar to previous best
## Run 487 stress 9.343984e-05 
## ... Procrustes: rmse 7.770277e-05  max resid 0.0001182121 
## ... Similar to previous best
## Run 488 stress 9.648016e-05 
## ... Procrustes: rmse 0.0001122054  max resid 0.0001966543 
## ... Similar to previous best
## Run 489 stress 9.873841e-05 
## ... Procrustes: rmse 0.0001629969  max resid 0.000365217 
## ... Similar to previous best
## Run 490 stress 9.261642e-05 
## ... Procrustes: rmse 9.940558e-05  max resid 0.0002071701 
## ... Similar to previous best
## Run 491 stress 8.891161e-05 
## ... Procrustes: rmse 0.0001295243  max resid 0.0002802229 
## ... Similar to previous best
## Run 492 stress 9.774807e-05 
## ... Procrustes: rmse 0.0001454649  max resid 0.0002919783 
## ... Similar to previous best
## Run 493 stress 9.915556e-05 
## ... Procrustes: rmse 9.222463e-05  max resid 0.0001646676 
## ... Similar to previous best
## Run 494 stress 9.353164e-05 
## ... Procrustes: rmse 0.000165515  max resid 0.0003480661 
## ... Similar to previous best
## Run 495 stress 9.820541e-05 
## ... Procrustes: rmse 0.0001951882  max resid 0.0003609844 
## ... Similar to previous best
## Run 496 stress 9.614086e-05 
## ... Procrustes: rmse 0.0001344973  max resid 0.0002817428 
## ... Similar to previous best
## Run 497 stress 9.002489e-05 
## ... Procrustes: rmse 9.30283e-05  max resid 0.0001973882 
## ... Similar to previous best
## Run 498 stress 9.987271e-05 
## ... Procrustes: rmse 0.0001729222  max resid 0.0003651593 
## ... Similar to previous best
## Run 499 stress 9.513502e-05 
## ... Procrustes: rmse 0.0001689931  max resid 0.0003045042 
## ... Similar to previous best
## Run 500 stress 9.866027e-05 
## ... Procrustes: rmse 0.0002073255  max resid 0.0004044378 
## ... Similar to previous best
## *** Best solution repeated 330 times
## Warning in metaMDS(jpreseso_dist, try = 1000, parallel = 4, previous.best, :
## stress is (nearly) zero: you may have insufficient data
## Dice-Sørensen
# All sites 
sprese_NMDS <- metaMDS(sprese_dist, try = 1000, parallel = 4)
## Run 0 stress 0.08144919 
## Run 1 stress 0.08265366 
## Run 2 stress 0.08189388 
## ... Procrustes: rmse 0.07166969  max resid 0.1938115 
## Run 3 stress 0.07948983 
## ... New best solution
## ... Procrustes: rmse 0.01588629  max resid 0.04491025 
## Run 4 stress 0.08182117 
## Run 5 stress 0.08485117 
## Run 6 stress 0.08443448 
## Run 7 stress 0.08252799 
## Run 8 stress 0.082502 
## Run 9 stress 0.081757 
## Run 10 stress 0.08433703 
## Run 11 stress 0.08217345 
## Run 12 stress 0.09103944 
## Run 13 stress 0.08097762 
## Run 14 stress 0.0800318 
## Run 15 stress 0.08471604 
## Run 16 stress 0.08459589 
## Run 17 stress 0.08530166 
## Run 18 stress 0.09063323 
## Run 19 stress 0.08265437 
## Run 20 stress 0.08957589 
## *** Best solution was not repeated -- monoMDS stopping criteria:
##     20: stress ratio > sratmax
# Mixed and stratified lakes
spresems_NMDS <- metaMDS(spresems_dist, try = 1000, parallel = 4)
## Run 0 stress 0.08503579 
## Run 1 stress 0.09268391 
## Run 2 stress 0.09374328 
## Run 3 stress 0.09669866 
## Run 4 stress 0.09286084 
## Run 5 stress 0.09535434 
## Run 6 stress 0.09407979 
## Run 7 stress 0.09030397 
## Run 8 stress 0.08503513 
## ... New best solution
## ... Procrustes: rmse 0.0004036477  max resid 0.001140587 
## ... Similar to previous best
## Run 9 stress 0.08440254 
## ... New best solution
## ... Procrustes: rmse 0.01430485  max resid 0.04275519 
## Run 10 stress 0.09407974 
## Run 11 stress 0.08503621 
## Run 12 stress 0.09380583 
## Run 13 stress 0.09465906 
## Run 14 stress 0.09268338 
## Run 15 stress 0.09030408 
## Run 16 stress 0.1026215 
## Run 17 stress 0.09337274 
## Run 18 stress 0.085037 
## Run 19 stress 0.09030396 
## Run 20 stress 0.08503487 
## *** Best solution was not repeated -- monoMDS stopping criteria:
##     20: stress ratio > sratmax
# Ocean sites and mixed lakes
spreseom_NMDS <- metaMDS(spreseom_dist, try = 1000, parallel = 4)
## Run 0 stress 0.06623465 
## Run 1 stress 0.07411955 
## Run 2 stress 0.06124496 
## ... New best solution
## ... Procrustes: rmse 0.1389504  max resid 0.2532802 
## Run 3 stress 0.07411951 
## Run 4 stress 0.0741194 
## Run 5 stress 0.06623461 
## Run 6 stress 0.08226162 
## Run 7 stress 0.06477929 
## Run 8 stress 0.06623457 
## Run 9 stress 0.0612336 
## ... New best solution
## ... Procrustes: rmse 0.01451356  max resid 0.04041493 
## Run 10 stress 0.06477881 
## Run 11 stress 0.2548126 
## Run 12 stress 0.0716697 
## Run 13 stress 0.2887255 
## Run 14 stress 0.06623459 
## Run 15 stress 0.06124493 
## ... Procrustes: rmse 0.01499279  max resid 0.04152836 
## Run 16 stress 0.0741195 
## Run 17 stress 0.06477967 
## Run 18 stress 0.06623459 
## Run 19 stress 0.06623458 
## Run 20 stress 0.06477887 
## *** Best solution was not repeated -- monoMDS stopping criteria:
##     19: stress ratio > sratmax
##      1: scale factor of the gradient < sfgrmin
# Stratified lakes and ocean sites
spreseso_NMDS <- metaMDS(spreseso_dist, try = 1000, parallel = 4)
## Run 0 stress 9.120921e-05 
## Run 1 stress 8.988777e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001908834  max resid 0.0003487929 
## ... Similar to previous best
## Run 2 stress 0.2413829 
## Run 3 stress 9.87493e-05 
## ... Procrustes: rmse 0.0001882507  max resid 0.00035701 
## ... Similar to previous best
## Run 4 stress 9.505239e-05 
## ... Procrustes: rmse 0.0001254943  max resid 0.0002498878 
## ... Similar to previous best
## Run 5 stress 8.842979e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001800877  max resid 0.0003365766 
## ... Similar to previous best
## Run 6 stress 9.664653e-05 
## ... Procrustes: rmse 0.0001841995  max resid 0.0004296358 
## ... Similar to previous best
## Run 7 stress 9.753874e-05 
## ... Procrustes: rmse 0.0002298436  max resid 0.0004665612 
## ... Similar to previous best
## Run 8 stress 9.599941e-05 
## ... Procrustes: rmse 0.0001788471  max resid 0.0003310474 
## ... Similar to previous best
## Run 9 stress 9.376373e-05 
## ... Procrustes: rmse 0.00017492  max resid 0.0003224698 
## ... Similar to previous best
## Run 10 stress 9.762915e-05 
## ... Procrustes: rmse 0.0001317214  max resid 0.0002844036 
## ... Similar to previous best
## Run 11 stress 8.458922e-05 
## ... New best solution
## ... Procrustes: rmse 0.0002356651  max resid 0.0004325938 
## ... Similar to previous best
## Run 12 stress 9.633549e-05 
## ... Procrustes: rmse 0.0001697501  max resid 0.0002836809 
## ... Similar to previous best
## Run 13 stress 9.895871e-05 
## ... Procrustes: rmse 0.0001290125  max resid 0.000296876 
## ... Similar to previous best
## Run 14 stress 9.913057e-05 
## ... Procrustes: rmse 0.0002327374  max resid 0.0004048325 
## ... Similar to previous best
## Run 15 stress 9.966467e-05 
## ... Procrustes: rmse 0.0002136448  max resid 0.0003117524 
## ... Similar to previous best
## Run 16 stress 9.528411e-05 
## ... Procrustes: rmse 0.000172575  max resid 0.0004073891 
## ... Similar to previous best
## Run 17 stress 9.615783e-05 
## ... Procrustes: rmse 0.0001822469  max resid 0.0003446949 
## ... Similar to previous best
## Run 18 stress 0.2391425 
## Run 19 stress 9.384909e-05 
## ... Procrustes: rmse 0.0001817118  max resid 0.0003432172 
## ... Similar to previous best
## Run 20 stress 9.49004e-05 
## ... Procrustes: rmse 0.0002144172  max resid 0.0003669832 
## ... Similar to previous best
## *** Best solution repeated 9 times
## Warning in metaMDS(spreseso_dist, try = 1000, parallel = 4): stress is (nearly)
## zero: you may have insufficient data
### Biogeographic
## Jaccard
# All sites 
jpresb_NMDS <- metaMDS(jpresb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.090746 
## Run 1 stress 0.0923613 
## Run 2 stress 0.09148455 
## Run 3 stress 0.09087538 
## ... Procrustes: rmse 0.02928647  max resid 0.09283843 
## Run 4 stress 0.09236132 
## Run 5 stress 0.09646675 
## Run 6 stress 0.0907461 
## ... Procrustes: rmse 0.0001475972  max resid 0.0002487037 
## ... Similar to previous best
## Run 7 stress 0.09160271 
## Run 8 stress 0.1072735 
## Run 9 stress 0.1074332 
## Run 10 stress 0.09160263 
## Run 11 stress 0.1071955 
## Run 12 stress 0.09160268 
## Run 13 stress 0.1076547 
## Run 14 stress 0.1073654 
## Run 15 stress 0.1076701 
## Run 16 stress 0.09236125 
## Run 17 stress 0.09702934 
## Run 18 stress 0.09299747 
## Run 19 stress 0.1070509 
## Run 20 stress 0.1071953 
## Run 21 stress 0.09072306 
## ... New best solution
## ... Procrustes: rmse 0.02826535  max resid 0.09367669 
## Run 22 stress 0.09160262 
## Run 23 stress 0.1071481 
## Run 24 stress 0.09123427 
## Run 25 stress 0.1071481 
## Run 26 stress 0.1077817 
## Run 27 stress 0.1076824 
## Run 28 stress 0.09160265 
## Run 29 stress 0.0907461 
## ... Procrustes: rmse 0.02822845  max resid 0.09419437 
## Run 30 stress 0.1068691 
## Run 31 stress 0.09702954 
## Run 32 stress 0.107273 
## Run 33 stress 0.09161034 
## Run 34 stress 0.1087015 
## Run 35 stress 0.09646616 
## Run 36 stress 0.09160268 
## Run 37 stress 0.1077822 
## Run 38 stress 0.09172709 
## Run 39 stress 0.0964663 
## Run 40 stress 0.1104974 
## Run 41 stress 0.09012996 
## ... New best solution
## ... Procrustes: rmse 0.01519781  max resid 0.0411981 
## Run 42 stress 0.0916028 
## Run 43 stress 0.09012993 
## ... New best solution
## ... Procrustes: rmse 4.023064e-05  max resid 7.926606e-05 
## ... Similar to previous best
## Run 44 stress 0.09161031 
## Run 45 stress 0.107432 
## Run 46 stress 0.09161028 
## Run 47 stress 0.1076282 
## Run 48 stress 0.1071476 
## Run 49 stress 0.09123413 
## Run 50 stress 0.1087012 
## Run 51 stress 0.1076542 
## Run 52 stress 0.107051 
## Run 53 stress 0.09335816 
## Run 54 stress 0.1087661 
## Run 55 stress 0.09140394 
## Run 56 stress 0.1115199 
## Run 57 stress 0.090746 
## Run 58 stress 0.1096251 
## Run 59 stress 0.09236137 
## Run 60 stress 0.09072327 
## Run 61 stress 0.09140394 
## Run 62 stress 0.09161036 
## Run 63 stress 0.09160265 
## Run 64 stress 0.1072735 
## Run 65 stress 0.0916103 
## Run 66 stress 0.1076283 
## Run 67 stress 0.09160264 
## Run 68 stress 0.1068699 
## Run 69 stress 0.1065864 
## Run 70 stress 0.1077996 
## Run 71 stress 0.1115197 
## Run 72 stress 0.0923612 
## Run 73 stress 0.09161035 
## Run 74 stress 0.09236121 
## Run 75 stress 0.09702978 
## Run 76 stress 0.09286508 
## Run 77 stress 0.09072304 
## Run 78 stress 0.0916026 
## Run 79 stress 0.09646659 
## Run 80 stress 0.1068695 
## Run 81 stress 0.09236129 
## Run 82 stress 0.1071484 
## Run 83 stress 0.09087543 
## Run 84 stress 0.09123408 
## Run 85 stress 0.1067344 
## Run 86 stress 0.09161033 
## Run 87 stress 0.1087016 
## Run 88 stress 0.09162889 
## Run 89 stress 0.090746 
## Run 90 stress 0.09646762 
## Run 91 stress 0.09677547 
## Run 92 stress 0.1073658 
## Run 93 stress 0.09161028 
## Run 94 stress 0.09335798 
## Run 95 stress 0.1077202 
## Run 96 stress 0.1102834 
## Run 97 stress 0.09161035 
## Run 98 stress 0.090746 
## Run 99 stress 0.1076822 
## Run 100 stress 0.1076701 
## Run 101 stress 0.09301382 
## Run 102 stress 0.09246731 
## Run 103 stress 0.1133904 
## Run 104 stress 0.09008902 
## ... New best solution
## ... Procrustes: rmse 0.009025347  max resid 0.0308572 
## Run 105 stress 0.1067466 
## Run 106 stress 0.107051 
## Run 107 stress 0.09140383 
## Run 108 stress 0.107273 
## Run 109 stress 0.09286503 
## Run 110 stress 0.09677703 
## Run 111 stress 0.09160275 
## Run 112 stress 0.1073655 
## Run 113 stress 0.0964664 
## Run 114 stress 0.1099469 
## Run 115 stress 0.09072306 
## Run 116 stress 0.1109104 
## Run 117 stress 0.09161036 
## Run 118 stress 0.09646618 
## Run 119 stress 0.1070509 
## Run 120 stress 0.09013008 
## ... Procrustes: rmse 0.009030306  max resid 0.03099909 
## Run 121 stress 0.09161038 
## Run 122 stress 0.09072305 
## Run 123 stress 0.09087551 
## Run 124 stress 0.09161027 
## Run 125 stress 0.09072306 
## Run 126 stress 0.0907231 
## Run 127 stress 0.1072734 
## Run 128 stress 0.1074324 
## Run 129 stress 0.09246743 
## Run 130 stress 0.09162895 
## Run 131 stress 0.09072313 
## Run 132 stress 0.1067343 
## Run 133 stress 0.09162892 
## Run 134 stress 0.1087018 
## Run 135 stress 0.09236118 
## Run 136 stress 0.1088838 
## Run 137 stress 0.09072318 
## Run 138 stress 0.09161035 
## Run 139 stress 0.09161035 
## Run 140 stress 0.1090357 
## Run 141 stress 0.1067338 
## Run 142 stress 0.106734 
## Run 143 stress 0.09072316 
## Run 144 stress 0.09813095 
## Run 145 stress 0.1076824 
## Run 146 stress 0.09074603 
## Run 147 stress 0.09161044 
## Run 148 stress 0.09301386 
## Run 149 stress 0.09286529 
## Run 150 stress 0.09396281 
## Run 151 stress 0.1072732 
## Run 152 stress 0.1070513 
## Run 153 stress 0.1072864 
## Run 154 stress 0.09813102 
## Run 155 stress 0.090089 
## ... New best solution
## ... Procrustes: rmse 6.418934e-05  max resid 0.0001067422 
## ... Similar to previous best
## Run 156 stress 0.1104973 
## Run 157 stress 0.09161028 
## Run 158 stress 0.09206441 
## Run 159 stress 0.1087653 
## Run 160 stress 0.09072304 
## Run 161 stress 0.09072312 
## Run 162 stress 0.09286517 
## Run 163 stress 0.09677743 
## Run 164 stress 0.09206448 
## Run 165 stress 0.09236122 
## Run 166 stress 0.090746 
## Run 167 stress 0.1070509 
## Run 168 stress 0.09161034 
## Run 169 stress 0.09161029 
## Run 170 stress 0.107273 
## Run 171 stress 0.09301399 
## Run 172 stress 0.0920645 
## Run 173 stress 0.09160276 
## Run 174 stress 0.09161028 
## Run 175 stress 0.1077999 
## Run 176 stress 0.09012989 
## ... Procrustes: rmse 0.009027026  max resid 0.03094068 
## Run 177 stress 0.09140394 
## Run 178 stress 0.1074317 
## Run 179 stress 0.09301406 
## Run 180 stress 0.107273 
## Run 181 stress 0.1087657 
## Run 182 stress 0.1101712 
## Run 183 stress 0.09286513 
## Run 184 stress 0.09702955 
## Run 185 stress 0.09008913 
## ... Procrustes: rmse 0.0001408665  max resid 0.0002382693 
## ... Similar to previous best
## Run 186 stress 0.090746 
## Run 187 stress 0.09813132 
## Run 188 stress 0.09236118 
## Run 189 stress 0.09236124 
## Run 190 stress 0.110171 
## Run 191 stress 0.1065862 
## Run 192 stress 0.09160267 
## Run 193 stress 0.0916026 
## Run 194 stress 0.1077996 
## Run 195 stress 0.1118503 
## Run 196 stress 0.09236118 
## Run 197 stress 0.09072547 
## Run 198 stress 0.0916027 
## Run 199 stress 0.1067327 
## Run 200 stress 0.1073654 
## Run 201 stress 0.09236118 
## Run 202 stress 0.09646604 
## Run 203 stress 0.1102834 
## Run 204 stress 0.1077992 
## Run 205 stress 0.1090356 
## Run 206 stress 0.09246745 
## Run 207 stress 0.1104964 
## Run 208 stress 0.09161042 
## Run 209 stress 0.09702963 
## Run 210 stress 0.1076701 
## Run 211 stress 0.09335818 
## Run 212 stress 0.1081605 
## Run 213 stress 0.1073654 
## Run 214 stress 0.09161028 
## Run 215 stress 0.1087012 
## Run 216 stress 0.1071478 
## Run 217 stress 0.09072543 
## Run 218 stress 0.09087538 
## Run 219 stress 0.09301421 
## Run 220 stress 0.1065863 
## Run 221 stress 0.09162896 
## Run 222 stress 0.09161027 
## Run 223 stress 0.09160271 
## Run 224 stress 0.1073654 
## Run 225 stress 0.09160262 
## Run 226 stress 0.1071956 
## Run 227 stress 0.09161028 
## Run 228 stress 0.09646698 
## Run 229 stress 0.1119477 
## Run 230 stress 0.1087014 
## Run 231 stress 0.09172706 
## Run 232 stress 0.09161028 
## Run 233 stress 0.106869 
## Run 234 stress 0.1099466 
## Run 235 stress 0.09206451 
## Run 236 stress 0.09072311 
## Run 237 stress 0.0916103 
## Run 238 stress 0.09161044 
## Run 239 stress 0.1108945 
## Run 240 stress 0.09160281 
## Run 241 stress 0.09072552 
## Run 242 stress 0.09702933 
## Run 243 stress 0.1070509 
## Run 244 stress 0.09161037 
## Run 245 stress 0.09677533 
## Run 246 stress 0.09160268 
## Run 247 stress 0.09008904 
## ... Procrustes: rmse 9.296883e-05  max resid 0.0001545219 
## ... Similar to previous best
## Run 248 stress 0.090089 
## ... Procrustes: rmse 1.19634e-05  max resid 2.098958e-05 
## ... Similar to previous best
## Run 249 stress 0.090746 
## Run 250 stress 0.09206452 
## Run 251 stress 0.09161031 
## Run 252 stress 0.1067348 
## Run 253 stress 0.1073655 
## Run 254 stress 0.09123416 
## Run 255 stress 0.09161036 
## Run 256 stress 0.0916104 
## Run 257 stress 0.09336453 
## Run 258 stress 0.09160266 
## Run 259 stress 0.09072318 
## Run 260 stress 0.09140399 
## Run 261 stress 0.090746 
## Run 262 stress 0.1076822 
## Run 263 stress 0.1071482 
## Run 264 stress 0.1087658 
## Run 265 stress 0.1067347 
## Run 266 stress 0.1074328 
## Run 267 stress 0.09012991 
## ... Procrustes: rmse 0.009022426  max resid 0.03085437 
## Run 268 stress 0.1067469 
## Run 269 stress 0.090089 
## ... Procrustes: rmse 2.882278e-05  max resid 4.634513e-05 
## ... Similar to previous best
## Run 270 stress 0.1077997 
## Run 271 stress 0.108255 
## Run 272 stress 0.09172709 
## Run 273 stress 0.09087541 
## Run 274 stress 0.09072312 
## Run 275 stress 0.09301407 
## Run 276 stress 0.1101718 
## Run 277 stress 0.09161029 
## Run 278 stress 0.09299756 
## Run 279 stress 0.1108945 
## Run 280 stress 0.09236125 
## Run 281 stress 0.09072543 
## Run 282 stress 0.1072732 
## Run 283 stress 0.09072543 
## Run 284 stress 0.1077996 
## Run 285 stress 0.09206445 
## Run 286 stress 0.1076282 
## Run 287 stress 0.09072304 
## Run 288 stress 0.09702969 
## Run 289 stress 0.107799 
## Run 290 stress 0.09072317 
## Run 291 stress 0.09172701 
## Run 292 stress 0.1077992 
## Run 293 stress 0.09160263 
## Run 294 stress 0.09646742 
## Run 295 stress 0.0920645 
## Run 296 stress 0.09856353 
## Run 297 stress 0.1072735 
## Run 298 stress 0.1067472 
## Run 299 stress 0.09148473 
## Run 300 stress 0.1073654 
## Run 301 stress 0.09074601 
## Run 302 stress 0.09206443 
## Run 303 stress 0.09162887 
## Run 304 stress 0.09123416 
## Run 305 stress 0.1090352 
## Run 306 stress 0.09140409 
## Run 307 stress 0.09087553 
## Run 308 stress 0.09646747 
## Run 309 stress 0.1087012 
## Run 310 stress 0.09236134 
## Run 311 stress 0.09161029 
## Run 312 stress 0.09206452 
## Run 313 stress 0.1087656 
## Run 314 stress 0.1101716 
## Run 315 stress 0.111521 
## Run 316 stress 0.1076819 
## Run 317 stress 0.09072553 
## Run 318 stress 0.1087016 
## Run 319 stress 0.1073654 
## Run 320 stress 0.1118777 
## Run 321 stress 0.1067337 
## Run 322 stress 0.09161052 
## Run 323 stress 0.09072306 
## Run 324 stress 0.09677532 
## Run 325 stress 0.1074349 
## Run 326 stress 0.09072551 
## Run 327 stress 0.09012989 
## ... Procrustes: rmse 0.009028531  max resid 0.03096213 
## Run 328 stress 0.09335813 
## Run 329 stress 0.1090352 
## Run 330 stress 0.09160259 
## Run 331 stress 0.09161028 
## Run 332 stress 0.09008909 
## ... Procrustes: rmse 0.0001458147  max resid 0.0002421131 
## ... Similar to previous best
## Run 333 stress 0.1065863 
## Run 334 stress 0.0912342 
## Run 335 stress 0.09236118 
## Run 336 stress 0.09161031 
## Run 337 stress 0.1076283 
## Run 338 stress 0.1067349 
## Run 339 stress 0.1108357 
## Run 340 stress 0.09646693 
## Run 341 stress 0.09160267 
## Run 342 stress 0.09072312 
## Run 343 stress 0.09087543 
## Run 344 stress 0.09161038 
## Run 345 stress 0.09161027 
## Run 346 stress 0.09286499 
## Run 347 stress 0.09162891 
## Run 348 stress 0.09160262 
## Run 349 stress 0.09072308 
## Run 350 stress 0.09087538 
## Run 351 stress 0.1072732 
## Run 352 stress 0.09172701 
## Run 353 stress 0.09161028 
## Run 354 stress 0.09072316 
## Run 355 stress 0.1093937 
## Run 356 stress 0.09087538 
## Run 357 stress 0.1082559 
## Run 358 stress 0.090746 
## Run 359 stress 0.09236118 
## Run 360 stress 0.1077996 
## Run 361 stress 0.0912341 
## Run 362 stress 0.1115212 
## Run 363 stress 0.09702927 
## Run 364 stress 0.09072543 
## Run 365 stress 0.1090355 
## Run 366 stress 0.09161035 
## Run 367 stress 0.09123421 
## Run 368 stress 0.09286507 
## Run 369 stress 0.1109105 
## Run 370 stress 0.1072732 
## Run 371 stress 0.09160262 
## Run 372 stress 0.0908754 
## Run 373 stress 0.09012991 
## ... Procrustes: rmse 0.009022922  max resid 0.03085711 
## Run 374 stress 0.09646609 
## Run 375 stress 0.09072308 
## Run 376 stress 0.09299749 
## Run 377 stress 0.09160294 
## Run 378 stress 0.09813078 
## Run 379 stress 0.09286522 
## Run 380 stress 0.09236118 
## Run 381 stress 0.09160273 
## Run 382 stress 0.09008909 
## ... Procrustes: rmse 0.0001498225  max resid 0.0002496078 
## ... Similar to previous best
## Run 383 stress 0.09008903 
## ... Procrustes: rmse 8.171955e-05  max resid 0.0001370667 
## ... Similar to previous best
## Run 384 stress 0.107273 
## Run 385 stress 0.1072097 
## Run 386 stress 0.09335826 
## Run 387 stress 0.1077992 
## Run 388 stress 0.09072305 
## Run 389 stress 0.096466 
## Run 390 stress 0.1070509 
## Run 391 stress 0.09160261 
## Run 392 stress 0.09160267 
## Run 393 stress 0.107051 
## Run 394 stress 0.1077997 
## Run 395 stress 0.1073655 
## Run 396 stress 0.1108355 
## Run 397 stress 0.09396266 
## Run 398 stress 0.1073655 
## Run 399 stress 0.09140374 
## Run 400 stress 0.09161027 
## Run 401 stress 0.09012991 
## ... Procrustes: rmse 0.009033266  max resid 0.03105521 
## Run 402 stress 0.09646669 
## Run 403 stress 0.09160277 
## Run 404 stress 0.1067338 
## Run 405 stress 0.09008901 
## ... Procrustes: rmse 4.585965e-05  max resid 7.391204e-05 
## ... Similar to previous best
## Run 406 stress 0.1074334 
## Run 407 stress 0.1065864 
## Run 408 stress 0.1067348 
## Run 409 stress 0.1102836 
## Run 410 stress 0.09012997 
## ... Procrustes: rmse 0.009018083  max resid 0.03075464 
## Run 411 stress 0.09677532 
## Run 412 stress 0.09702979 
## Run 413 stress 0.09236118 
## Run 414 stress 0.1068692 
## Run 415 stress 0.09162887 
## Run 416 stress 0.1072731 
## Run 417 stress 0.1108358 
## Run 418 stress 0.1108356 
## Run 419 stress 0.09236127 
## Run 420 stress 0.0923612 
## Run 421 stress 0.1072731 
## Run 422 stress 0.1090355 
## Run 423 stress 0.09813087 
## Run 424 stress 0.09140402 
## Run 425 stress 0.09072304 
## Run 426 stress 0.09301417 
## Run 427 stress 0.09702949 
## Run 428 stress 0.09072309 
## Run 429 stress 0.1067335 
## Run 430 stress 0.09161032 
## Run 431 stress 0.1076702 
## Run 432 stress 0.09301391 
## Run 433 stress 0.09140373 
## Run 434 stress 0.09646542 
## Run 435 stress 0.09160266 
## Run 436 stress 0.09206454 
## Run 437 stress 0.09160265 
## Run 438 stress 0.1077996 
## Run 439 stress 0.1068696 
## Run 440 stress 0.1087657 
## Run 441 stress 0.09677631 
## Run 442 stress 0.09206442 
## Run 443 stress 0.09072308 
## Run 444 stress 0.0916026 
## Run 445 stress 0.09161029 
## Run 446 stress 0.09012993 
## ... Procrustes: rmse 0.0090208  max resid 0.03081244 
## Run 447 stress 0.09140376 
## Run 448 stress 0.1076819 
## Run 449 stress 0.09206459 
## Run 450 stress 0.09702953 
## Run 451 stress 0.09161027 
## Run 452 stress 0.09646707 
## Run 453 stress 0.1074326 
## Run 454 stress 0.1090353 
## Run 455 stress 0.1068693 
## Run 456 stress 0.1071476 
## Run 457 stress 0.09236118 
## Run 458 stress 0.1073654 
## Run 459 stress 0.1074342 
## Run 460 stress 0.1099466 
## Run 461 stress 0.09236125 
## Run 462 stress 0.090746 
## Run 463 stress 0.1072735 
## Run 464 stress 0.0912341 
## Run 465 stress 0.09161036 
## Run 466 stress 0.09286669 
## Run 467 stress 0.09072543 
## Run 468 stress 0.1102833 
## Run 469 stress 0.09161035 
## Run 470 stress 0.09396275 
## Run 471 stress 0.1076283 
## Run 472 stress 0.0964682 
## Run 473 stress 0.1077818 
## Run 474 stress 0.0923612 
## Run 475 stress 0.1093945 
## Run 476 stress 0.09008904 
## ... Procrustes: rmse 9.592848e-05  max resid 0.0001594017 
## ... Similar to previous best
## Run 477 stress 0.09160259 
## Run 478 stress 0.09162889 
## Run 479 stress 0.09160263 
## Run 480 stress 0.09161032 
## Run 481 stress 0.1071962 
## Run 482 stress 0.09286503 
## Run 483 stress 0.1067465 
## Run 484 stress 0.09162889 
## Run 485 stress 0.1102831 
## Run 486 stress 0.1074327 
## Run 487 stress 0.1096258 
## Run 488 stress 0.1067339 
## Run 489 stress 0.09677534 
## Run 490 stress 0.09162887 
## Run 491 stress 0.1073654 
## Run 492 stress 0.1072731 
## Run 493 stress 0.0908754 
## Run 494 stress 0.1072731 
## Run 495 stress 0.1067338 
## Run 496 stress 0.1072731 
## Run 497 stress 0.09160265 
## Run 498 stress 0.09286503 
## Run 499 stress 0.09087543 
## Run 500 stress 0.0923613 
## *** Best solution repeated 10 times
# Mixed and stratified lakes
jpresbms_NMDS <- metaMDS(jpresbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08659673 
## Run 1 stress 0.09847317 
## Run 2 stress 0.1017606 
## Run 3 stress 0.1084403 
## Run 4 stress 0.1055395 
## Run 5 stress 0.09820575 
## Run 6 stress 0.1055395 
## Run 7 stress 0.09669148 
## Run 8 stress 0.1009084 
## Run 9 stress 0.08709978 
## Run 10 stress 0.0870998 
## Run 11 stress 0.09678125 
## Run 12 stress 0.1001416 
## Run 13 stress 0.09770037 
## Run 14 stress 0.09659294 
## Run 15 stress 0.0993334 
## Run 16 stress 0.09610472 
## Run 17 stress 0.1017605 
## Run 18 stress 0.09610458 
## Run 19 stress 0.09820576 
## Run 20 stress 0.09669197 
## Run 21 stress 0.08659679 
## ... Procrustes: rmse 0.0001209689  max resid 0.0002641472 
## ... Similar to previous best
## Run 22 stress 0.09610473 
## Run 23 stress 0.09610471 
## Run 24 stress 0.0971931 
## Run 25 stress 0.09669148 
## Run 26 stress 0.09770003 
## Run 27 stress 0.09669153 
## Run 28 stress 0.08659682 
## ... Procrustes: rmse 0.0001157269  max resid 0.0002402509 
## ... Similar to previous best
## Run 29 stress 0.09610464 
## Run 30 stress 0.3023335 
## Run 31 stress 0.0870998 
## Run 32 stress 0.1084404 
## Run 33 stress 0.1083834 
## Run 34 stress 0.08709978 
## Run 35 stress 0.09933326 
## Run 36 stress 0.1001416 
## Run 37 stress 0.08659674 
## ... Procrustes: rmse 4.134831e-05  max resid 8.633737e-05 
## ... Similar to previous best
## Run 38 stress 0.09926886 
## Run 39 stress 0.09719301 
## Run 40 stress 0.08709991 
## Run 41 stress 0.1001415 
## Run 42 stress 0.09634639 
## Run 43 stress 0.09847322 
## Run 44 stress 0.08709985 
## Run 45 stress 0.08709979 
## Run 46 stress 0.0967811 
## Run 47 stress 0.09770022 
## Run 48 stress 0.08709978 
## Run 49 stress 0.08659675 
## ... Procrustes: rmse 5.458297e-05  max resid 0.0001151017 
## ... Similar to previous best
## Run 50 stress 0.1009079 
## Run 51 stress 0.1055801 
## Run 52 stress 0.09639143 
## Run 53 stress 0.0870998 
## Run 54 stress 0.08709999 
## Run 55 stress 0.1009081 
## Run 56 stress 0.09639148 
## Run 57 stress 0.09639141 
## Run 58 stress 0.08659678 
## ... Procrustes: rmse 0.0001117348  max resid 0.0002439218 
## ... Similar to previous best
## Run 59 stress 0.09610454 
## Run 60 stress 0.09639148 
## Run 61 stress 0.09610461 
## Run 62 stress 0.09781864 
## Run 63 stress 0.09678131 
## Run 64 stress 0.09610471 
## Run 65 stress 0.09899169 
## Run 66 stress 0.0963914 
## Run 67 stress 0.08709987 
## Run 68 stress 0.08709992 
## Run 69 stress 0.08709988 
## Run 70 stress 0.2519918 
## Run 71 stress 0.0961045 
## Run 72 stress 0.09634629 
## Run 73 stress 0.09769993 
## Run 74 stress 0.1084403 
## Run 75 stress 0.1009079 
## Run 76 stress 0.09610455 
## Run 77 stress 0.10558 
## Run 78 stress 0.09610483 
## Run 79 stress 0.09610469 
## Run 80 stress 0.09899095 
## Run 81 stress 0.09719298 
## Run 82 stress 0.08659677 
## ... Procrustes: rmse 5.171293e-05  max resid 9.894633e-05 
## ... Similar to previous best
## Run 83 stress 0.09610488 
## Run 84 stress 0.09820575 
## Run 85 stress 0.09820572 
## Run 86 stress 0.09610468 
## Run 87 stress 0.09926832 
## Run 88 stress 0.1001416 
## Run 89 stress 0.09678116 
## Run 90 stress 0.1001416 
## Run 91 stress 0.0870998 
## Run 92 stress 0.09933331 
## Run 93 stress 0.09639163 
## Run 94 stress 0.1001415 
## Run 95 stress 0.08659673 
## ... Procrustes: rmse 6.537481e-06  max resid 1.406847e-05 
## ... Similar to previous best
## Run 96 stress 0.09610454 
## Run 97 stress 0.09669147 
## Run 98 stress 0.1001415 
## Run 99 stress 0.08709986 
## Run 100 stress 0.08659681 
## ... Procrustes: rmse 0.0001397791  max resid 0.0003003544 
## ... Similar to previous best
## Run 101 stress 0.09610464 
## Run 102 stress 0.08709979 
## Run 103 stress 0.09639152 
## Run 104 stress 0.08709983 
## Run 105 stress 0.08659676 
## ... Procrustes: rmse 7.646863e-05  max resid 0.0001660115 
## ... Similar to previous best
## Run 106 stress 0.08659673 
## ... Procrustes: rmse 2.489345e-05  max resid 5.384034e-05 
## ... Similar to previous best
## Run 107 stress 0.0961045 
## Run 108 stress 0.09769936 
## Run 109 stress 0.08709994 
## Run 110 stress 0.0870998 
## Run 111 stress 0.09820578 
## Run 112 stress 0.0961045 
## Run 113 stress 0.0963914 
## Run 114 stress 0.09610477 
## Run 115 stress 0.09769922 
## Run 116 stress 0.1025582 
## Run 117 stress 0.09634639 
## Run 118 stress 0.08709983 
## Run 119 stress 0.09659318 
## Run 120 stress 0.09610455 
## Run 121 stress 0.09610479 
## Run 122 stress 0.08659678 
## ... Procrustes: rmse 0.00010743  max resid 0.0002340695 
## ... Similar to previous best
## Run 123 stress 0.09610486 
## Run 124 stress 0.09639137 
## Run 125 stress 0.09719309 
## Run 126 stress 0.1001415 
## Run 127 stress 0.1159873 
## Run 128 stress 0.09610474 
## Run 129 stress 0.08659672 
## ... New best solution
## ... Procrustes: rmse 1.696284e-05  max resid 3.726246e-05 
## ... Similar to previous best
## Run 130 stress 0.09974297 
## Run 131 stress 0.08659672 
## ... Procrustes: rmse 6.011089e-06  max resid 1.421746e-05 
## ... Similar to previous best
## Run 132 stress 0.09610482 
## Run 133 stress 0.09926921 
## Run 134 stress 0.09639155 
## Run 135 stress 0.0982058 
## Run 136 stress 0.08659674 
## ... Procrustes: rmse 6.244974e-05  max resid 0.0001357017 
## ... Similar to previous best
## Run 137 stress 0.08659675 
## ... Procrustes: rmse 8.594786e-05  max resid 0.0001998756 
## ... Similar to previous best
## Run 138 stress 0.09678129 
## Run 139 stress 0.1017605 
## Run 140 stress 0.1001417 
## Run 141 stress 0.08709978 
## Run 142 stress 0.09820579 
## Run 143 stress 0.09610451 
## Run 144 stress 0.09659302 
## Run 145 stress 0.09719302 
## Run 146 stress 0.24998 
## Run 147 stress 0.09770013 
## Run 148 stress 0.09678118 
## Run 149 stress 0.09639154 
## Run 150 stress 0.1017608 
## Run 151 stress 0.09926819 
## Run 152 stress 0.1055395 
## Run 153 stress 0.2668212 
## Run 154 stress 0.1001417 
## Run 155 stress 0.0870998 
## Run 156 stress 0.09820571 
## Run 157 stress 0.1017606 
## Run 158 stress 0.25055 
## Run 159 stress 0.09974303 
## Run 160 stress 0.09669167 
## Run 161 stress 0.1001415 
## Run 162 stress 0.08709979 
## Run 163 stress 0.09847326 
## Run 164 stress 0.09847335 
## Run 165 stress 0.1009083 
## Run 166 stress 0.1017605 
## Run 167 stress 0.10844 
## Run 168 stress 0.1084403 
## Run 169 stress 0.09669168 
## Run 170 stress 0.1023119 
## Run 171 stress 0.1001416 
## Run 172 stress 0.1025583 
## Run 173 stress 0.1001416 
## Run 174 stress 0.0961048 
## Run 175 stress 0.08709978 
## Run 176 stress 0.09974306 
## Run 177 stress 0.08659679 
## ... Procrustes: rmse 0.000143358  max resid 0.0003108634 
## ... Similar to previous best
## Run 178 stress 0.09639168 
## Run 179 stress 0.09719298 
## Run 180 stress 0.09899153 
## Run 181 stress 0.09659287 
## Run 182 stress 0.09933246 
## Run 183 stress 0.09639145 
## Run 184 stress 0.09659293 
## Run 185 stress 0.09610489 
## Run 186 stress 0.09610451 
## Run 187 stress 0.09770049 
## Run 188 stress 0.1083836 
## Run 189 stress 0.09769969 
## Run 190 stress 0.1009083 
## Run 191 stress 0.09610458 
## Run 192 stress 0.08709978 
## Run 193 stress 0.09610456 
## Run 194 stress 0.08709978 
## Run 195 stress 0.09678129 
## Run 196 stress 0.1055395 
## Run 197 stress 0.0961045 
## Run 198 stress 0.08709992 
## Run 199 stress 0.09610457 
## Run 200 stress 0.0870999 
## Run 201 stress 0.09610466 
## Run 202 stress 0.1015317 
## Run 203 stress 0.0961045 
## Run 204 stress 0.3373344 
## Run 205 stress 0.1001416 
## Run 206 stress 0.0870998 
## Run 207 stress 0.09659299 
## Run 208 stress 0.09639136 
## Run 209 stress 0.09610452 
## Run 210 stress 0.1009083 
## Run 211 stress 0.0971931 
## Run 212 stress 0.08659675 
## ... Procrustes: rmse 8.671552e-05  max resid 0.0001881892 
## ... Similar to previous best
## Run 213 stress 0.09669153 
## Run 214 stress 0.1084399 
## Run 215 stress 0.09610473 
## Run 216 stress 0.09610474 
## Run 217 stress 0.0865968 
## ... Procrustes: rmse 0.0001326304  max resid 0.0002766035 
## ... Similar to previous best
## Run 218 stress 0.09820577 
## Run 219 stress 0.0870999 
## Run 220 stress 0.08709978 
## Run 221 stress 0.09847321 
## Run 222 stress 0.08659674 
## ... Procrustes: rmse 6.529878e-05  max resid 0.0001410278 
## ... Similar to previous best
## Run 223 stress 0.08659687 
## ... Procrustes: rmse 0.0002073137  max resid 0.0004472042 
## ... Similar to previous best
## Run 224 stress 0.09669147 
## Run 225 stress 0.09610459 
## Run 226 stress 0.1088711 
## Run 227 stress 0.09719303 
## Run 228 stress 0.1084402 
## Run 229 stress 0.09719297 
## Run 230 stress 0.1055804 
## Run 231 stress 0.1009082 
## Run 232 stress 0.08659677 
## ... Procrustes: rmse 0.000118279  max resid 0.0002552334 
## ... Similar to previous best
## Run 233 stress 0.0963915 
## Run 234 stress 0.08659673 
## ... Procrustes: rmse 4.28518e-05  max resid 8.390445e-05 
## ... Similar to previous best
## Run 235 stress 0.08709978 
## Run 236 stress 0.09610469 
## Run 237 stress 0.0865968 
## ... Procrustes: rmse 0.0001574818  max resid 0.0003457644 
## ... Similar to previous best
## Run 238 stress 0.1088712 
## Run 239 stress 0.08659673 
## ... Procrustes: rmse 3.312183e-05  max resid 7.19539e-05 
## ... Similar to previous best
## Run 240 stress 0.08709987 
## Run 241 stress 0.08709978 
## Run 242 stress 0.08659673 
## ... Procrustes: rmse 3.06464e-05  max resid 6.664712e-05 
## ... Similar to previous best
## Run 243 stress 0.09639142 
## Run 244 stress 0.09678117 
## Run 245 stress 0.09610452 
## Run 246 stress 0.08709981 
## Run 247 stress 0.09659336 
## Run 248 stress 0.0984733 
## Run 249 stress 0.09847313 
## Run 250 stress 0.1008328 
## Run 251 stress 0.09669179 
## Run 252 stress 0.10558 
## Run 253 stress 0.09610479 
## Run 254 stress 0.1023118 
## Run 255 stress 0.08709986 
## Run 256 stress 0.08659681 
## ... Procrustes: rmse 0.0001572695  max resid 0.0003396277 
## ... Similar to previous best
## Run 257 stress 0.09847322 
## Run 258 stress 0.09610462 
## Run 259 stress 0.09610462 
## Run 260 stress 0.09610454 
## Run 261 stress 0.1015317 
## Run 262 stress 0.09610459 
## Run 263 stress 0.08659672 
## ... Procrustes: rmse 1.251336e-05  max resid 2.680724e-05 
## ... Similar to previous best
## Run 264 stress 0.08709979 
## Run 265 stress 0.08709984 
## Run 266 stress 0.09820571 
## Run 267 stress 0.08709978 
## Run 268 stress 0.08709981 
## Run 269 stress 0.09610469 
## Run 270 stress 0.08709997 
## Run 271 stress 0.09610475 
## Run 272 stress 0.09610456 
## Run 273 stress 0.0865968 
## ... Procrustes: rmse 0.0001500299  max resid 0.0003248834 
## ... Similar to previous best
## Run 274 stress 0.09926899 
## Run 275 stress 0.09769922 
## Run 276 stress 0.08709982 
## Run 277 stress 0.08659675 
## ... Procrustes: rmse 9.350295e-05  max resid 0.0002022585 
## ... Similar to previous best
## Run 278 stress 0.1008329 
## Run 279 stress 0.0870998 
## Run 280 stress 0.09659322 
## Run 281 stress 0.09820569 
## Run 282 stress 0.0870998 
## Run 283 stress 0.09820584 
## Run 284 stress 0.09769941 
## Run 285 stress 0.08709992 
## Run 286 stress 0.1001416 
## Run 287 stress 0.1017603 
## Run 288 stress 0.08659676 
## ... Procrustes: rmse 9.738969e-05  max resid 0.0002112982 
## ... Similar to previous best
## Run 289 stress 0.09610485 
## Run 290 stress 0.09781859 
## Run 291 stress 0.09669148 
## Run 292 stress 0.1017608 
## Run 293 stress 0.09639158 
## Run 294 stress 0.08659684 
## ... Procrustes: rmse 0.000188347  max resid 0.0004062606 
## ... Similar to previous best
## Run 295 stress 0.09820573 
## Run 296 stress 0.09639136 
## Run 297 stress 0.08709978 
## Run 298 stress 0.1001416 
## Run 299 stress 0.1084405 
## Run 300 stress 0.08709978 
## Run 301 stress 0.09669177 
## Run 302 stress 0.09639146 
## Run 303 stress 0.1009081 
## Run 304 stress 0.3216672 
## Run 305 stress 0.09634631 
## Run 306 stress 0.09610463 
## Run 307 stress 0.0961049 
## Run 308 stress 0.09719302 
## Run 309 stress 0.2492652 
## Run 310 stress 0.09974299 
## Run 311 stress 0.1017603 
## Run 312 stress 0.1001415 
## Run 313 stress 0.0870998 
## Run 314 stress 0.1009084 
## Run 315 stress 0.09974297 
## Run 316 stress 0.09719303 
## Run 317 stress 0.3073577 
## Run 318 stress 0.08709978 
## Run 319 stress 0.09610459 
## Run 320 stress 0.09926851 
## Run 321 stress 0.09820574 
## Run 322 stress 0.08659674 
## ... Procrustes: rmse 7.349805e-05  max resid 0.0001484167 
## ... Similar to previous best
## Run 323 stress 0.08659672 
## ... Procrustes: rmse 4.675175e-06  max resid 1.042245e-05 
## ... Similar to previous best
## Run 324 stress 0.08709982 
## Run 325 stress 0.09639149 
## Run 326 stress 0.09639136 
## Run 327 stress 0.08709983 
## Run 328 stress 0.1023117 
## Run 329 stress 0.09769977 
## Run 330 stress 0.09610454 
## Run 331 stress 0.08709981 
## Run 332 stress 0.09610476 
## Run 333 stress 0.09678126 
## Run 334 stress 0.08709978 
## Run 335 stress 0.08659689 
## ... Procrustes: rmse 0.0001952877  max resid 0.0004233741 
## ... Similar to previous best
## Run 336 stress 0.09610452 
## Run 337 stress 0.2513325 
## Run 338 stress 0.09610455 
## Run 339 stress 0.08659673 
## ... Procrustes: rmse 1.736097e-05  max resid 3.834582e-05 
## ... Similar to previous best
## Run 340 stress 0.09610487 
## Run 341 stress 0.09669147 
## Run 342 stress 0.0961045 
## Run 343 stress 0.08709994 
## Run 344 stress 0.1001416 
## Run 345 stress 0.1001416 
## Run 346 stress 0.09678134 
## Run 347 stress 0.08659676 
## ... Procrustes: rmse 0.0001015713  max resid 0.0002205313 
## ... Similar to previous best
## Run 348 stress 0.09610483 
## Run 349 stress 0.0989915 
## Run 350 stress 0.1055395 
## Run 351 stress 0.08659673 
## ... Procrustes: rmse 3.084376e-05  max resid 6.671217e-05 
## ... Similar to previous best
## Run 352 stress 0.09926911 
## Run 353 stress 0.08709984 
## Run 354 stress 0.08659674 
## ... Procrustes: rmse 5.459163e-05  max resid 0.0001158749 
## ... Similar to previous best
## Run 355 stress 0.08709978 
## Run 356 stress 0.09719308 
## Run 357 stress 0.1001415 
## Run 358 stress 0.09678117 
## Run 359 stress 0.08659678 
## ... Procrustes: rmse 0.000130959  max resid 0.0002729753 
## ... Similar to previous best
## Run 360 stress 0.09639135 
## Run 361 stress 0.1088714 
## Run 362 stress 0.09610481 
## Run 363 stress 0.09847317 
## Run 364 stress 0.09933395 
## Run 365 stress 0.09669146 
## Run 366 stress 0.09847327 
## Run 367 stress 0.08659679 
## ... Procrustes: rmse 0.0001423034  max resid 0.0003062278 
## ... Similar to previous best
## Run 368 stress 0.08709982 
## Run 369 stress 0.09678113 
## Run 370 stress 0.08709992 
## Run 371 stress 0.1083842 
## Run 372 stress 0.09820572 
## Run 373 stress 0.09770052 
## Run 374 stress 0.09847324 
## Run 375 stress 0.0967813 
## Run 376 stress 0.09974297 
## Run 377 stress 0.2492113 
## Run 378 stress 0.0961047 
## Run 379 stress 0.1055397 
## Run 380 stress 0.100908 
## Run 381 stress 0.0870998 
## Run 382 stress 0.1001417 
## Run 383 stress 0.09769969 
## Run 384 stress 0.08659677 
## ... Procrustes: rmse 0.0001250945  max resid 0.000270698 
## ... Similar to previous best
## Run 385 stress 0.1008328 
## Run 386 stress 0.09769984 
## Run 387 stress 0.09770036 
## Run 388 stress 0.09847316 
## Run 389 stress 0.0870998 
## Run 390 stress 0.08709981 
## Run 391 stress 0.08709978 
## Run 392 stress 0.09639143 
## Run 393 stress 0.113574 
## Run 394 stress 0.09669146 
## Run 395 stress 0.09719313 
## Run 396 stress 0.0984732 
## Run 397 stress 0.09669154 
## Run 398 stress 0.08709999 
## Run 399 stress 0.09659299 
## Run 400 stress 0.09669152 
## Run 401 stress 0.09669148 
## Run 402 stress 0.08659673 
## ... Procrustes: rmse 4.974727e-05  max resid 0.0001089761 
## ... Similar to previous best
## Run 403 stress 0.09847323 
## Run 404 stress 0.1017606 
## Run 405 stress 0.09719312 
## Run 406 stress 0.0977003 
## Run 407 stress 0.3089594 
## Run 408 stress 0.09847322 
## Run 409 stress 0.1017604 
## Run 410 stress 0.09974303 
## Run 411 stress 0.09719305 
## Run 412 stress 0.09610467 
## Run 413 stress 0.08709984 
## Run 414 stress 0.1017603 
## Run 415 stress 0.09610451 
## Run 416 stress 0.08709978 
## Run 417 stress 0.09847341 
## Run 418 stress 0.09926822 
## Run 419 stress 0.09669148 
## Run 420 stress 0.08709979 
## Run 421 stress 0.09659303 
## Run 422 stress 0.09770004 
## Run 423 stress 0.09639145 
## Run 424 stress 0.09678122 
## Run 425 stress 0.100908 
## Run 426 stress 0.09678127 
## Run 427 stress 0.08659681 
## ... Procrustes: rmse 0.0001249824  max resid 0.0002645202 
## ... Similar to previous best
## Run 428 stress 0.2513324 
## Run 429 stress 0.0963914 
## Run 430 stress 0.09610452 
## Run 431 stress 0.100908 
## Run 432 stress 0.09974302 
## Run 433 stress 0.09678112 
## Run 434 stress 0.08709984 
## Run 435 stress 0.09639137 
## Run 436 stress 0.0961045 
## Run 437 stress 0.1009081 
## Run 438 stress 0.08659673 
## ... Procrustes: rmse 2.1377e-05  max resid 5.044906e-05 
## ... Similar to previous best
## Run 439 stress 0.09639143 
## Run 440 stress 0.09847336 
## Run 441 stress 0.09669157 
## Run 442 stress 0.3242894 
## Run 443 stress 0.08709985 
## Run 444 stress 0.08709988 
## Run 445 stress 0.09770051 
## Run 446 stress 0.09669154 
## Run 447 stress 0.1055395 
## Run 448 stress 0.08709978 
## Run 449 stress 0.08659677 
## ... Procrustes: rmse 6.223809e-05  max resid 0.0001249404 
## ... Similar to previous best
## Run 450 stress 0.09926891 
## Run 451 stress 0.1001415 
## Run 452 stress 0.09669171 
## Run 453 stress 0.08709989 
## Run 454 stress 0.09610455 
## Run 455 stress 0.08709981 
## Run 456 stress 0.1017605 
## Run 457 stress 0.3066246 
## Run 458 stress 0.09678112 
## Run 459 stress 0.1017603 
## Run 460 stress 0.09678121 
## Run 461 stress 0.09678139 
## Run 462 stress 0.09926946 
## Run 463 stress 0.1001415 
## Run 464 stress 0.08709983 
## Run 465 stress 0.1001417 
## Run 466 stress 0.1008328 
## Run 467 stress 0.10844 
## Run 468 stress 0.09610466 
## Run 469 stress 0.09639143 
## Run 470 stress 0.08709979 
## Run 471 stress 0.108384 
## Run 472 stress 0.09639135 
## Run 473 stress 0.1001416 
## Run 474 stress 0.09669178 
## Run 475 stress 0.25055 
## Run 476 stress 0.09781865 
## Run 477 stress 0.09719312 
## Run 478 stress 0.0997432 
## Run 479 stress 0.0961045 
## Run 480 stress 0.09659288 
## Run 481 stress 0.1001415 
## Run 482 stress 0.09639147 
## Run 483 stress 0.09719302 
## Run 484 stress 0.08659674 
## ... Procrustes: rmse 5.862388e-05  max resid 0.0001269699 
## ... Similar to previous best
## Run 485 stress 0.09933324 
## Run 486 stress 0.0982057 
## Run 487 stress 0.09899127 
## Run 488 stress 0.09610469 
## Run 489 stress 0.08659682 
## ... Procrustes: rmse 0.0001585878  max resid 0.0003443529 
## ... Similar to previous best
## Run 490 stress 0.09678122 
## Run 491 stress 0.09820572 
## Run 492 stress 0.1001415 
## Run 493 stress 0.08659673 
## ... Procrustes: rmse 3.885074e-05  max resid 8.373421e-05 
## ... Similar to previous best
## Run 494 stress 0.09847314 
## Run 495 stress 0.1008329 
## Run 496 stress 0.09719298 
## Run 497 stress 0.09770001 
## Run 498 stress 0.100908 
## Run 499 stress 0.0865968 
## ... Procrustes: rmse 0.0001514924  max resid 0.0003268317 
## ... Similar to previous best
## Run 500 stress 0.1055397 
## *** Best solution repeated 38 times
# Ocean sites and mixed lakes
jpresbom_NMDS <- metaMDS(jpresbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.06881667 
## Run 1 stress 0.06973634 
## Run 2 stress 0.06881668 
## ... Procrustes: rmse 3.707229e-05  max resid 8.685551e-05 
## ... Similar to previous best
## Run 3 stress 0.06951346 
## Run 4 stress 0.06961751 
## Run 5 stress 0.06961823 
## Run 6 stress 0.06881668 
## ... Procrustes: rmse 3.718527e-05  max resid 8.666343e-05 
## ... Similar to previous best
## Run 7 stress 0.06961734 
## Run 8 stress 0.06961744 
## Run 9 stress 0.06951321 
## Run 10 stress 0.06973612 
## Run 11 stress 0.06961701 
## Run 12 stress 0.06881668 
## ... Procrustes: rmse 5.49246e-05  max resid 0.0001298111 
## ... Similar to previous best
## Run 13 stress 0.06881667 
## ... Procrustes: rmse 1.122488e-05  max resid 2.642735e-05 
## ... Similar to previous best
## Run 14 stress 0.06881667 
## ... Procrustes: rmse 2.163379e-05  max resid 5.124693e-05 
## ... Similar to previous best
## Run 15 stress 0.0738991 
## Run 16 stress 0.07611923 
## Run 17 stress 0.06881668 
## ... Procrustes: rmse 3.265855e-05  max resid 7.483887e-05 
## ... Similar to previous best
## Run 18 stress 0.06961862 
## Run 19 stress 0.06961702 
## Run 20 stress 0.07332519 
## Run 21 stress 0.06951374 
## Run 22 stress 0.07332524 
## Run 23 stress 0.07611899 
## Run 24 stress 0.0688167 
## ... Procrustes: rmse 0.0001056499  max resid 0.0002459036 
## ... Similar to previous best
## Run 25 stress 0.06951381 
## Run 26 stress 0.07611934 
## Run 27 stress 0.07332518 
## Run 28 stress 0.06881667 
## ... New best solution
## ... Procrustes: rmse 2.486788e-05  max resid 5.891223e-05 
## ... Similar to previous best
## Run 29 stress 0.0695139 
## Run 30 stress 0.06881669 
## ... Procrustes: rmse 4.147499e-05  max resid 8.03705e-05 
## ... Similar to previous best
## Run 31 stress 0.06881672 
## ... Procrustes: rmse 0.0001253721  max resid 0.0002946389 
## ... Similar to previous best
## Run 32 stress 0.06881685 
## ... Procrustes: rmse 0.000237467  max resid 0.0005478976 
## ... Similar to previous best
## Run 33 stress 0.076119 
## Run 34 stress 0.06961743 
## Run 35 stress 0.0741111 
## Run 36 stress 0.06961883 
## Run 37 stress 0.06973625 
## Run 38 stress 0.07332512 
## Run 39 stress 0.06961691 
## Run 40 stress 0.06881688 
## ... Procrustes: rmse 0.0002634591  max resid 0.0006133985 
## ... Similar to previous best
## Run 41 stress 0.06961788 
## Run 42 stress 0.06973619 
## Run 43 stress 0.3124325 
## Run 44 stress 0.06961812 
## Run 45 stress 0.06881683 
## ... Procrustes: rmse 0.0002038737  max resid 0.0004666732 
## ... Similar to previous best
## Run 46 stress 0.06881671 
## ... Procrustes: rmse 8.296776e-05  max resid 0.0001907189 
## ... Similar to previous best
## Run 47 stress 0.06961773 
## Run 48 stress 0.06881667 
## ... Procrustes: rmse 3.142671e-05  max resid 6.69443e-05 
## ... Similar to previous best
## Run 49 stress 0.06961867 
## Run 50 stress 0.06961814 
## Run 51 stress 0.06961816 
## Run 52 stress 0.06961735 
## Run 53 stress 0.06961748 
## Run 54 stress 0.06881674 
## ... Procrustes: rmse 0.0001538689  max resid 0.0003612142 
## ... Similar to previous best
## Run 55 stress 0.06961752 
## Run 56 stress 0.0688167 
## ... Procrustes: rmse 0.0001029672  max resid 0.0002429018 
## ... Similar to previous best
## Run 57 stress 0.06961723 
## Run 58 stress 0.06961766 
## Run 59 stress 0.3432081 
## Run 60 stress 0.06961804 
## Run 61 stress 0.0688167 
## ... Procrustes: rmse 9.39904e-05  max resid 0.0002167171 
## ... Similar to previous best
## Run 62 stress 0.07332523 
## Run 63 stress 0.06961727 
## Run 64 stress 0.06961769 
## Run 65 stress 0.06961762 
## Run 66 stress 0.06973607 
## Run 67 stress 0.07411109 
## Run 68 stress 0.06961736 
## Run 69 stress 0.07411123 
## Run 70 stress 0.06961833 
## Run 71 stress 0.0695133 
## Run 72 stress 0.07611905 
## Run 73 stress 0.06961798 
## Run 74 stress 0.06973621 
## Run 75 stress 0.06961801 
## Run 76 stress 0.06973614 
## Run 77 stress 0.0697363 
## Run 78 stress 0.07611919 
## Run 79 stress 0.06881681 
## ... Procrustes: rmse 0.0002107055  max resid 0.0004924381 
## ... Similar to previous best
## Run 80 stress 0.06973624 
## Run 81 stress 0.3432093 
## Run 82 stress 0.06961809 
## Run 83 stress 0.07611911 
## Run 84 stress 0.06881685 
## ... Procrustes: rmse 0.0002446261  max resid 0.000567317 
## ... Similar to previous best
## Run 85 stress 0.06961706 
## Run 86 stress 0.06961771 
## Run 87 stress 0.06961694 
## Run 88 stress 0.073325 
## Run 89 stress 0.06881668 
## ... Procrustes: rmse 4.799859e-05  max resid 0.000110303 
## ... Similar to previous best
## Run 90 stress 0.06881667 
## ... Procrustes: rmse 2.914904e-05  max resid 6.998451e-05 
## ... Similar to previous best
## Run 91 stress 0.06881668 
## ... Procrustes: rmse 6.490534e-05  max resid 0.0001570939 
## ... Similar to previous best
## Run 92 stress 0.07611896 
## Run 93 stress 0.06881667 
## ... Procrustes: rmse 2.230581e-05  max resid 4.980879e-05 
## ... Similar to previous best
## Run 94 stress 0.0688167 
## ... Procrustes: rmse 0.0001025603  max resid 0.0002419988 
## ... Similar to previous best
## Run 95 stress 0.06881667 
## ... Procrustes: rmse 2.455969e-05  max resid 4.808855e-05 
## ... Similar to previous best
## Run 96 stress 0.07611933 
## Run 97 stress 0.07411105 
## Run 98 stress 0.06951335 
## Run 99 stress 0.3432088 
## Run 100 stress 0.06973614 
## Run 101 stress 0.06951388 
## Run 102 stress 0.06881667 
## ... Procrustes: rmse 2.239789e-05  max resid 5.178439e-05 
## ... Similar to previous best
## Run 103 stress 0.06881667 
## ... Procrustes: rmse 3.672415e-05  max resid 8.231821e-05 
## ... Similar to previous best
## Run 104 stress 0.06881669 
## ... Procrustes: rmse 6.727337e-05  max resid 0.0001618009 
## ... Similar to previous best
## Run 105 stress 0.06973615 
## Run 106 stress 0.06881667 
## ... Procrustes: rmse 3.671674e-05  max resid 8.900947e-05 
## ... Similar to previous best
## Run 107 stress 0.06961818 
## Run 108 stress 0.06973604 
## Run 109 stress 0.06961747 
## Run 110 stress 0.0741111 
## Run 111 stress 0.06973605 
## Run 112 stress 0.0696173 
## Run 113 stress 0.06961721 
## Run 114 stress 0.06961787 
## Run 115 stress 0.06961717 
## Run 116 stress 0.06881667 
## ... Procrustes: rmse 5.170671e-05  max resid 0.0001243318 
## ... Similar to previous best
## Run 117 stress 0.06881668 
## ... Procrustes: rmse 5.585912e-05  max resid 0.000125363 
## ... Similar to previous best
## Run 118 stress 0.06881669 
## ... Procrustes: rmse 6.397942e-05  max resid 0.0001448112 
## ... Similar to previous best
## Run 119 stress 0.06961873 
## Run 120 stress 0.06973645 
## Run 121 stress 0.06961845 
## Run 122 stress 0.06973619 
## Run 123 stress 0.06961842 
## Run 124 stress 0.07611893 
## Run 125 stress 0.07411127 
## Run 126 stress 0.06961778 
## Run 127 stress 0.06961736 
## Run 128 stress 0.07332518 
## Run 129 stress 0.06951353 
## Run 130 stress 0.06961885 
## Run 131 stress 0.06881674 
## ... Procrustes: rmse 0.0001536439  max resid 0.0003613783 
## ... Similar to previous best
## Run 132 stress 0.2542395 
## Run 133 stress 0.07332514 
## Run 134 stress 0.07611891 
## Run 135 stress 0.06881669 
## ... Procrustes: rmse 8.162905e-05  max resid 0.0001911506 
## ... Similar to previous best
## Run 136 stress 0.07611918 
## Run 137 stress 0.0697363 
## Run 138 stress 0.06881676 
## ... Procrustes: rmse 7.572341e-05  max resid 0.0001470379 
## ... Similar to previous best
## Run 139 stress 0.06951366 
## Run 140 stress 0.06961742 
## Run 141 stress 0.06881673 
## ... Procrustes: rmse 0.0001224477  max resid 0.0002854185 
## ... Similar to previous best
## Run 142 stress 0.3249489 
## Run 143 stress 0.07389911 
## Run 144 stress 0.06961815 
## Run 145 stress 0.06881668 
## ... Procrustes: rmse 6.654295e-05  max resid 0.0001592215 
## ... Similar to previous best
## Run 146 stress 0.06951328 
## Run 147 stress 0.06881667 
## ... Procrustes: rmse 4.462024e-05  max resid 0.0001066635 
## ... Similar to previous best
## Run 148 stress 0.0695139 
## Run 149 stress 0.06881678 
## ... Procrustes: rmse 0.0001897095  max resid 0.0004431387 
## ... Similar to previous best
## Run 150 stress 0.06881668 
## ... Procrustes: rmse 6.732049e-05  max resid 0.0001616825 
## ... Similar to previous best
## Run 151 stress 0.07332538 
## Run 152 stress 0.06973601 
## Run 153 stress 0.06881667 
## ... Procrustes: rmse 4.079071e-05  max resid 9.497156e-05 
## ... Similar to previous best
## Run 154 stress 0.06881667 
## ... Procrustes: rmse 3.396424e-05  max resid 7.986188e-05 
## ... Similar to previous best
## Run 155 stress 0.06961706 
## Run 156 stress 0.06973622 
## Run 157 stress 0.06961737 
## Run 158 stress 0.06973608 
## Run 159 stress 0.06881669 
## ... Procrustes: rmse 6.303449e-05  max resid 0.0001409866 
## ... Similar to previous best
## Run 160 stress 0.06881667 
## ... New best solution
## ... Procrustes: rmse 1.062642e-05  max resid 2.657931e-05 
## ... Similar to previous best
## Run 161 stress 0.06961753 
## Run 162 stress 0.06961698 
## Run 163 stress 0.0761191 
## Run 164 stress 0.06961787 
## Run 165 stress 0.06951355 
## Run 166 stress 0.0696172 
## Run 167 stress 0.06961715 
## Run 168 stress 0.06961811 
## Run 169 stress 0.06973619 
## Run 170 stress 0.06961727 
## Run 171 stress 0.0741111 
## Run 172 stress 0.06961756 
## Run 173 stress 0.06973624 
## Run 174 stress 0.06961751 
## Run 175 stress 0.06881667 
## ... Procrustes: rmse 2.920278e-05  max resid 5.962961e-05 
## ... Similar to previous best
## Run 176 stress 0.06961863 
## Run 177 stress 0.0688168 
## ... Procrustes: rmse 0.0002019742  max resid 0.0004648162 
## ... Similar to previous best
## Run 178 stress 0.06961842 
## Run 179 stress 0.07611919 
## Run 180 stress 0.06951344 
## Run 181 stress 0.07411116 
## Run 182 stress 0.06881672 
## ... Procrustes: rmse 0.0001246117  max resid 0.0002900241 
## ... Similar to previous best
## Run 183 stress 0.07332501 
## Run 184 stress 0.06961796 
## Run 185 stress 0.06961771 
## Run 186 stress 0.06961823 
## Run 187 stress 0.06961716 
## Run 188 stress 0.06973612 
## Run 189 stress 0.0696189 
## Run 190 stress 0.06951366 
## Run 191 stress 0.06951396 
## Run 192 stress 0.069617 
## Run 193 stress 0.06961795 
## Run 194 stress 0.06973619 
## Run 195 stress 0.3432096 
## Run 196 stress 0.06881673 
## ... Procrustes: rmse 0.0001376557  max resid 0.0003247543 
## ... Similar to previous best
## Run 197 stress 0.2793271 
## Run 198 stress 0.06961776 
## Run 199 stress 0.0688167 
## ... Procrustes: rmse 9.131292e-05  max resid 0.0002143166 
## ... Similar to previous best
## Run 200 stress 0.06881667 
## ... Procrustes: rmse 6.216862e-06  max resid 1.145681e-05 
## ... Similar to previous best
## Run 201 stress 0.06951374 
## Run 202 stress 0.07332531 
## Run 203 stress 0.3116433 
## Run 204 stress 0.06961772 
## Run 205 stress 0.06961724 
## Run 206 stress 0.06961832 
## Run 207 stress 0.07611906 
## Run 208 stress 0.06973625 
## Run 209 stress 0.06961772 
## Run 210 stress 0.06951389 
## Run 211 stress 0.322285 
## Run 212 stress 0.07332531 
## Run 213 stress 0.07430909 
## Run 214 stress 0.06961772 
## Run 215 stress 0.06961813 
## Run 216 stress 0.06961742 
## Run 217 stress 0.0696184 
## Run 218 stress 0.0696171 
## Run 219 stress 0.07611929 
## Run 220 stress 0.06881675 
## ... Procrustes: rmse 0.0001311566  max resid 0.0002994971 
## ... Similar to previous best
## Run 221 stress 0.06961788 
## Run 222 stress 0.06973621 
## Run 223 stress 0.06961699 
## Run 224 stress 0.0695137 
## Run 225 stress 0.06973627 
## Run 226 stress 0.07430884 
## Run 227 stress 0.07389906 
## Run 228 stress 0.06881678 
## ... Procrustes: rmse 0.0001771603  max resid 0.0004105285 
## ... Similar to previous best
## Run 229 stress 0.0696173 
## Run 230 stress 0.06961842 
## Run 231 stress 0.06961758 
## Run 232 stress 0.07611913 
## Run 233 stress 0.06973638 
## Run 234 stress 0.06973603 
## Run 235 stress 0.07332526 
## Run 236 stress 0.06961777 
## Run 237 stress 0.06961872 
## Run 238 stress 0.06961721 
## Run 239 stress 0.06881668 
## ... Procrustes: rmse 3.875343e-05  max resid 9.174295e-05 
## ... Similar to previous best
## Run 240 stress 0.06881672 
## ... Procrustes: rmse 0.0001286492  max resid 0.0003037984 
## ... Similar to previous best
## Run 241 stress 0.06961737 
## Run 242 stress 0.06881668 
## ... Procrustes: rmse 5.653926e-05  max resid 0.0001332248 
## ... Similar to previous best
## Run 243 stress 0.06961749 
## Run 244 stress 0.07611907 
## Run 245 stress 0.06973626 
## Run 246 stress 0.06881669 
## ... Procrustes: rmse 7.377438e-05  max resid 0.0001715535 
## ... Similar to previous best
## Run 247 stress 0.07332538 
## Run 248 stress 0.07332507 
## Run 249 stress 0.06961722 
## Run 250 stress 0.06881667 
## ... Procrustes: rmse 1.457206e-05  max resid 3.214191e-05 
## ... Similar to previous best
## Run 251 stress 0.07332513 
## Run 252 stress 0.06881668 
## ... Procrustes: rmse 6.712545e-05  max resid 0.000157953 
## ... Similar to previous best
## Run 253 stress 0.06973623 
## Run 254 stress 0.06961698 
## Run 255 stress 0.06961712 
## Run 256 stress 0.06961851 
## Run 257 stress 0.0688167 
## ... Procrustes: rmse 9.605922e-05  max resid 0.0002271885 
## ... Similar to previous best
## Run 258 stress 0.0688167 
## ... Procrustes: rmse 8.0601e-05  max resid 0.0001841793 
## ... Similar to previous best
## Run 259 stress 0.06961733 
## Run 260 stress 0.06973609 
## Run 261 stress 0.0696178 
## Run 262 stress 0.06881668 
## ... Procrustes: rmse 7.391761e-05  max resid 0.0001741232 
## ... Similar to previous best
## Run 263 stress 0.06961838 
## Run 264 stress 0.07431072 
## Run 265 stress 0.06961694 
## Run 266 stress 0.07332501 
## Run 267 stress 0.07411117 
## Run 268 stress 0.06961698 
## Run 269 stress 0.06951384 
## Run 270 stress 0.06973607 
## Run 271 stress 0.06961695 
## Run 272 stress 0.07411115 
## Run 273 stress 0.06881669 
## ... Procrustes: rmse 8.565396e-05  max resid 0.0002033401 
## ... Similar to previous best
## Run 274 stress 0.06961819 
## Run 275 stress 0.06973612 
## Run 276 stress 0.06881667 
## ... Procrustes: rmse 1.833015e-05  max resid 4.159761e-05 
## ... Similar to previous best
## Run 277 stress 0.06961824 
## Run 278 stress 0.06951382 
## Run 279 stress 0.06961785 
## Run 280 stress 0.07611894 
## Run 281 stress 0.0688168 
## ... Procrustes: rmse 9.484586e-05  max resid 0.0002023772 
## ... Similar to previous best
## Run 282 stress 0.06881672 
## ... Procrustes: rmse 0.0001219237  max resid 0.0002862884 
## ... Similar to previous best
## Run 283 stress 0.06881667 
## ... Procrustes: rmse 3.945523e-05  max resid 9.149684e-05 
## ... Similar to previous best
## Run 284 stress 0.06961809 
## Run 285 stress 0.06881692 
## ... Procrustes: rmse 0.0002854084  max resid 0.0006584032 
## ... Similar to previous best
## Run 286 stress 0.06961767 
## Run 287 stress 0.06973605 
## Run 288 stress 0.06961722 
## Run 289 stress 0.06961759 
## Run 290 stress 0.06973615 
## Run 291 stress 0.0697362 
## Run 292 stress 0.06961784 
## Run 293 stress 0.06961881 
## Run 294 stress 0.06951345 
## Run 295 stress 0.0688167 
## ... Procrustes: rmse 6.677542e-05  max resid 0.0001561436 
## ... Similar to previous best
## Run 296 stress 0.07389915 
## Run 297 stress 0.3330624 
## Run 298 stress 0.06961833 
## Run 299 stress 0.06973636 
## Run 300 stress 0.06881671 
## ... Procrustes: rmse 0.0001075233  max resid 0.0002564141 
## ... Similar to previous best
## Run 301 stress 0.06961773 
## Run 302 stress 0.06961764 
## Run 303 stress 0.06881668 
## ... Procrustes: rmse 3.166928e-05  max resid 6.546023e-05 
## ... Similar to previous best
## Run 304 stress 0.07611917 
## Run 305 stress 0.06881668 
## ... Procrustes: rmse 4.754453e-05  max resid 0.000105712 
## ... Similar to previous best
## Run 306 stress 0.06961799 
## Run 307 stress 0.0696181 
## Run 308 stress 0.07611924 
## Run 309 stress 0.06881677 
## ... Procrustes: rmse 0.0001702901  max resid 0.0003923022 
## ... Similar to previous best
## Run 310 stress 0.06973612 
## Run 311 stress 0.06881667 
## ... Procrustes: rmse 1.381966e-05  max resid 2.303705e-05 
## ... Similar to previous best
## Run 312 stress 0.06881667 
## ... Procrustes: rmse 2.641154e-05  max resid 6.006672e-05 
## ... Similar to previous best
## Run 313 stress 0.06881667 
## ... Procrustes: rmse 3.903286e-05  max resid 9.09345e-05 
## ... Similar to previous best
## Run 314 stress 0.06961748 
## Run 315 stress 0.06973617 
## Run 316 stress 0.06961786 
## Run 317 stress 0.2802483 
## Run 318 stress 0.06961805 
## Run 319 stress 0.06973602 
## Run 320 stress 0.06881667 
## ... Procrustes: rmse 3.407971e-05  max resid 7.845105e-05 
## ... Similar to previous best
## Run 321 stress 0.06881667 
## ... Procrustes: rmse 2.292576e-05  max resid 5.45962e-05 
## ... Similar to previous best
## Run 322 stress 0.06973608 
## Run 323 stress 0.06961748 
## Run 324 stress 0.06881667 
## ... Procrustes: rmse 5.931542e-06  max resid 1.079518e-05 
## ... Similar to previous best
## Run 325 stress 0.06881668 
## ... Procrustes: rmse 4.959322e-05  max resid 0.0001188502 
## ... Similar to previous best
## Run 326 stress 0.06961744 
## Run 327 stress 0.07411103 
## Run 328 stress 0.06881667 
## ... Procrustes: rmse 5.784598e-06  max resid 9.563635e-06 
## ... Similar to previous best
## Run 329 stress 0.069617 
## Run 330 stress 0.06973606 
## Run 331 stress 0.0696183 
## Run 332 stress 0.06961858 
## Run 333 stress 0.06881667 
## ... Procrustes: rmse 1.704494e-05  max resid 3.859592e-05 
## ... Similar to previous best
## Run 334 stress 0.06961746 
## Run 335 stress 0.07411109 
## Run 336 stress 0.06961738 
## Run 337 stress 0.06961844 
## Run 338 stress 0.06881668 
## ... Procrustes: rmse 6.041828e-05  max resid 0.0001424437 
## ... Similar to previous best
## Run 339 stress 0.0688167 
## ... Procrustes: rmse 9.818361e-05  max resid 0.0002294232 
## ... Similar to previous best
## Run 340 stress 0.06973605 
## Run 341 stress 0.06961704 
## Run 342 stress 0.06973612 
## Run 343 stress 0.06973617 
## Run 344 stress 0.06881667 
## ... Procrustes: rmse 9.514107e-06  max resid 2.067301e-05 
## ... Similar to previous best
## Run 345 stress 0.0688167 
## ... Procrustes: rmse 9.346963e-05  max resid 0.000218901 
## ... Similar to previous best
## Run 346 stress 0.07332522 
## Run 347 stress 0.0688167 
## ... Procrustes: rmse 0.0001005687  max resid 0.0002376711 
## ... Similar to previous best
## Run 348 stress 0.06961853 
## Run 349 stress 0.06961758 
## Run 350 stress 0.06881683 
## ... Procrustes: rmse 0.0002178543  max resid 0.0005038827 
## ... Similar to previous best
## Run 351 stress 0.06961766 
## Run 352 stress 0.06973627 
## Run 353 stress 0.07332504 
## Run 354 stress 0.06961706 
## Run 355 stress 0.06961777 
## Run 356 stress 0.06881669 
## ... Procrustes: rmse 2.224248e-05  max resid 4.002077e-05 
## ... Similar to previous best
## Run 357 stress 0.06881672 
## ... Procrustes: rmse 7.36463e-05  max resid 0.0001636005 
## ... Similar to previous best
## Run 358 stress 0.07332518 
## Run 359 stress 0.07611888 
## Run 360 stress 0.06951347 
## Run 361 stress 0.0696175 
## Run 362 stress 0.06961782 
## Run 363 stress 0.3434698 
## Run 364 stress 0.06961748 
## Run 365 stress 0.06973632 
## Run 366 stress 0.06961875 
## Run 367 stress 0.06961875 
## Run 368 stress 0.06961709 
## Run 369 stress 0.07411112 
## Run 370 stress 0.281914 
## Run 371 stress 0.06961798 
## Run 372 stress 0.06961767 
## Run 373 stress 0.0696186 
## Run 374 stress 0.06961796 
## Run 375 stress 0.06951342 
## Run 376 stress 0.06961834 
## Run 377 stress 0.06961727 
## Run 378 stress 0.06973608 
## Run 379 stress 0.0697362 
## Run 380 stress 0.07332513 
## Run 381 stress 0.06961789 
## Run 382 stress 0.06951371 
## Run 383 stress 0.06881672 
## ... Procrustes: rmse 0.000119083  max resid 0.0002760418 
## ... Similar to previous best
## Run 384 stress 0.06951365 
## Run 385 stress 0.06961768 
## Run 386 stress 0.0688168 
## ... Procrustes: rmse 0.0001974216  max resid 0.0004550445 
## ... Similar to previous best
## Run 387 stress 0.06951352 
## Run 388 stress 0.06961756 
## Run 389 stress 0.07611917 
## Run 390 stress 0.06961767 
## Run 391 stress 0.06881669 
## ... Procrustes: rmse 8.464747e-05  max resid 0.0002005005 
## ... Similar to previous best
## Run 392 stress 0.06951374 
## Run 393 stress 0.06961856 
## Run 394 stress 0.06961792 
## Run 395 stress 0.06973642 
## Run 396 stress 0.06961795 
## Run 397 stress 0.06973621 
## Run 398 stress 0.06881667 
## ... Procrustes: rmse 4.920403e-05  max resid 0.000112245 
## ... Similar to previous best
## Run 399 stress 0.06881675 
## ... Procrustes: rmse 0.0001521311  max resid 0.000359777 
## ... Similar to previous best
## Run 400 stress 0.06961745 
## Run 401 stress 0.06951322 
## Run 402 stress 0.06881667 
## ... Procrustes: rmse 4.140199e-05  max resid 9.628655e-05 
## ... Similar to previous best
## Run 403 stress 0.06973619 
## Run 404 stress 0.07611917 
## Run 405 stress 0.06961862 
## Run 406 stress 0.3239233 
## Run 407 stress 0.06961823 
## Run 408 stress 0.06961756 
## Run 409 stress 0.07611909 
## Run 410 stress 0.06961763 
## Run 411 stress 0.06961844 
## Run 412 stress 0.06973621 
## Run 413 stress 0.06881667 
## ... Procrustes: rmse 2.152617e-05  max resid 4.851486e-05 
## ... Similar to previous best
## Run 414 stress 0.0696176 
## Run 415 stress 0.06881677 
## ... Procrustes: rmse 0.0001621184  max resid 0.0003711545 
## ... Similar to previous best
## Run 416 stress 0.0733252 
## Run 417 stress 0.06961752 
## Run 418 stress 0.06961708 
## Run 419 stress 0.06881671 
## ... Procrustes: rmse 9.565065e-05  max resid 0.0002210306 
## ... Similar to previous best
## Run 420 stress 0.06881669 
## ... Procrustes: rmse 6.640822e-05  max resid 0.0001556615 
## ... Similar to previous best
## Run 421 stress 0.06961748 
## Run 422 stress 0.06973615 
## Run 423 stress 0.06961771 
## Run 424 stress 0.07611898 
## Run 425 stress 0.06973601 
## Run 426 stress 0.06881668 
## ... Procrustes: rmse 4.487763e-05  max resid 0.0001030031 
## ... Similar to previous best
## Run 427 stress 0.06881671 
## ... Procrustes: rmse 0.0001088856  max resid 0.000253812 
## ... Similar to previous best
## Run 428 stress 0.06951385 
## Run 429 stress 0.07411118 
## Run 430 stress 0.0695137 
## Run 431 stress 0.07431141 
## Run 432 stress 0.06961789 
## Run 433 stress 0.06973629 
## Run 434 stress 0.06961758 
## Run 435 stress 0.06881667 
## ... Procrustes: rmse 1.3746e-05  max resid 3.217639e-05 
## ... Similar to previous best
## Run 436 stress 0.06973628 
## Run 437 stress 0.06961756 
## Run 438 stress 0.06881667 
## ... Procrustes: rmse 3.097521e-05  max resid 7.33678e-05 
## ... Similar to previous best
## Run 439 stress 0.06961856 
## Run 440 stress 0.06881667 
## ... Procrustes: rmse 6.478784e-06  max resid 1.472503e-05 
## ... Similar to previous best
## Run 441 stress 0.06961846 
## Run 442 stress 0.07332524 
## Run 443 stress 0.07611901 
## Run 444 stress 0.06951348 
## Run 445 stress 0.06961836 
## Run 446 stress 0.06961727 
## Run 447 stress 0.07332517 
## Run 448 stress 0.3531018 
## Run 449 stress 0.07611915 
## Run 450 stress 0.0761192 
## Run 451 stress 0.07411107 
## Run 452 stress 0.2802482 
## Run 453 stress 0.0688167 
## ... Procrustes: rmse 8.03064e-05  max resid 0.0001819785 
## ... Similar to previous best
## Run 454 stress 0.06881669 
## ... Procrustes: rmse 6.160637e-05  max resid 0.000139406 
## ... Similar to previous best
## Run 455 stress 0.0695137 
## Run 456 stress 0.06881668 
## ... Procrustes: rmse 3.798151e-05  max resid 8.807224e-05 
## ... Similar to previous best
## Run 457 stress 0.06961841 
## Run 458 stress 0.06961729 
## Run 459 stress 0.06961814 
## Run 460 stress 0.06881667 
## ... Procrustes: rmse 1.123307e-05  max resid 2.174909e-05 
## ... Similar to previous best
## Run 461 stress 0.06881667 
## ... Procrustes: rmse 1.183252e-05  max resid 2.461427e-05 
## ... Similar to previous best
## Run 462 stress 0.06951392 
## Run 463 stress 0.07411125 
## Run 464 stress 0.0696173 
## Run 465 stress 0.06961831 
## Run 466 stress 0.06973635 
## Run 467 stress 0.06961872 
## Run 468 stress 0.06961697 
## Run 469 stress 0.06951353 
## Run 470 stress 0.06881667 
## ... Procrustes: rmse 4.621615e-06  max resid 6.883946e-06 
## ... Similar to previous best
## Run 471 stress 0.06973607 
## Run 472 stress 0.06961819 
## Run 473 stress 0.06961716 
## Run 474 stress 0.06881668 
## ... Procrustes: rmse 4.083709e-05  max resid 9.21307e-05 
## ... Similar to previous best
## Run 475 stress 0.07332499 
## Run 476 stress 0.06961822 
## Run 477 stress 0.06973616 
## Run 478 stress 0.06881679 
## ... Procrustes: rmse 0.0001722213  max resid 0.0003941547 
## ... Similar to previous best
## Run 479 stress 0.3330626 
## Run 480 stress 0.06961842 
## Run 481 stress 0.06961773 
## Run 482 stress 0.06961696 
## Run 483 stress 0.06881669 
## ... Procrustes: rmse 8.115581e-05  max resid 0.0001871465 
## ... Similar to previous best
## Run 484 stress 0.06881673 
## ... Procrustes: rmse 0.0001374121  max resid 0.0003190196 
## ... Similar to previous best
## Run 485 stress 0.06881668 
## ... Procrustes: rmse 5.404837e-05  max resid 0.0001261247 
## ... Similar to previous best
## Run 486 stress 0.06973603 
## Run 487 stress 0.07332499 
## Run 488 stress 0.06973631 
## Run 489 stress 0.06881667 
## ... Procrustes: rmse 1.894405e-05  max resid 4.506082e-05 
## ... Similar to previous best
## Run 490 stress 0.06961806 
## Run 491 stress 0.0688167 
## ... Procrustes: rmse 8.525537e-05  max resid 0.0001959511 
## ... Similar to previous best
## Run 492 stress 0.07411114 
## Run 493 stress 0.0697362 
## Run 494 stress 0.06973604 
## Run 495 stress 0.06881672 
## ... Procrustes: rmse 0.0001101126  max resid 0.0002628258 
## ... Similar to previous best
## Run 496 stress 0.07332502 
## Run 497 stress 0.06961752 
## Run 498 stress 0.06973639 
## Run 499 stress 0.0688167 
## ... Procrustes: rmse 4.21932e-05  max resid 8.076432e-05 
## ... Similar to previous best
## Run 500 stress 0.06961783 
## *** Best solution repeated 76 times
# Stratified lakes and ocean sites
jpresbso_NMDS <- metaMDS(jpresbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08013059 
## Run 1 stress 0.07081974 
## ... New best solution
## ... Procrustes: rmse 0.1001537  max resid 0.2610525 
## Run 2 stress 0.07081979 
## ... Procrustes: rmse 3.78897e-05  max resid 0.0001001369 
## ... Similar to previous best
## Run 3 stress 0.08028808 
## Run 4 stress 0.08013059 
## Run 5 stress 0.08028806 
## Run 6 stress 0.08679565 
## Run 7 stress 0.08028807 
## Run 8 stress 0.07081961 
## ... New best solution
## ... Procrustes: rmse 0.0001890956  max resid 0.0005049454 
## ... Similar to previous best
## Run 9 stress 0.0843384 
## Run 10 stress 0.08028806 
## Run 11 stress 0.09109115 
## Run 12 stress 0.08013059 
## Run 13 stress 0.08679567 
## Run 14 stress 0.07081969 
## ... Procrustes: rmse 0.0001550354  max resid 0.0004097534 
## ... Similar to previous best
## Run 15 stress 0.08013059 
## Run 16 stress 0.08679567 
## Run 17 stress 0.08028806 
## Run 18 stress 0.09109113 
## Run 19 stress 0.07081961 
## ... Procrustes: rmse 6.66682e-05  max resid 0.0001764658 
## ... Similar to previous best
## Run 20 stress 0.0726393 
## Run 21 stress 0.07081968 
## ... Procrustes: rmse 0.0001827885  max resid 0.0004861563 
## ... Similar to previous best
## Run 22 stress 0.07081978 
## ... Procrustes: rmse 0.000262568  max resid 0.0006984798 
## ... Similar to previous best
## Run 23 stress 0.08199752 
## Run 24 stress 0.08433838 
## Run 25 stress 0.08013059 
## Run 26 stress 0.08679566 
## Run 27 stress 0.08013059 
## Run 28 stress 0.08433838 
## Run 29 stress 0.07081971 
## ... Procrustes: rmse 0.0001515071  max resid 0.0004054493 
## ... Similar to previous best
## Run 30 stress 0.07263931 
## Run 31 stress 0.07081961 
## ... Procrustes: rmse 1.998855e-05  max resid 5.109347e-05 
## ... Similar to previous best
## Run 32 stress 0.08013059 
## Run 33 stress 0.07263932 
## Run 34 stress 0.09109112 
## Run 35 stress 0.07081961 
## ... New best solution
## ... Procrustes: rmse 1.494918e-05  max resid 3.564356e-05 
## ... Similar to previous best
## Run 36 stress 0.08679566 
## Run 37 stress 0.0843384 
## Run 38 stress 0.08028807 
## Run 39 stress 0.07081965 
## ... Procrustes: rmse 0.0001387879  max resid 0.0003704447 
## ... Similar to previous best
## Run 40 stress 0.08013059 
## Run 41 stress 0.08013059 
## Run 42 stress 0.08013059 
## Run 43 stress 0.08199752 
## Run 44 stress 0.07081961 
## ... Procrustes: rmse 3.279654e-05  max resid 8.728061e-05 
## ... Similar to previous best
## Run 45 stress 0.08433843 
## Run 46 stress 0.08028807 
## Run 47 stress 0.08028808 
## Run 48 stress 0.07081971 
## ... Procrustes: rmse 0.0001929146  max resid 0.0005164706 
## ... Similar to previous best
## Run 49 stress 0.08013059 
## Run 50 stress 0.0801306 
## Run 51 stress 0.08013059 
## Run 52 stress 0.09109119 
## Run 53 stress 0.07063383 
## ... New best solution
## ... Procrustes: rmse 0.01424412  max resid 0.03135559 
## Run 54 stress 0.08028807 
## Run 55 stress 0.08433841 
## Run 56 stress 0.08028807 
## Run 57 stress 0.07081963 
## ... Procrustes: rmse 0.01421975  max resid 0.031086 
## Run 58 stress 0.08679565 
## Run 59 stress 0.07263929 
## Run 60 stress 0.08028806 
## Run 61 stress 0.08028807 
## Run 62 stress 0.07263929 
## Run 63 stress 0.08679564 
## Run 64 stress 0.07263929 
## Run 65 stress 0.08679567 
## Run 66 stress 0.08028806 
## Run 67 stress 0.09109114 
## Run 68 stress 0.08013059 
## Run 69 stress 0.07081969 
## ... Procrustes: rmse 0.01415311  max resid 0.03100573 
## Run 70 stress 0.08679568 
## Run 71 stress 0.07263929 
## Run 72 stress 0.08028806 
## Run 73 stress 0.08679565 
## Run 74 stress 0.08679565 
## Run 75 stress 0.08199752 
## Run 76 stress 0.08028807 
## Run 77 stress 0.08199752 
## Run 78 stress 0.08199753 
## Run 79 stress 0.08679564 
## Run 80 stress 0.08028806 
## Run 81 stress 0.07263929 
## Run 82 stress 0.08028808 
## Run 83 stress 0.09109114 
## Run 84 stress 0.08028807 
## Run 85 stress 0.07063381 
## ... New best solution
## ... Procrustes: rmse 7.516114e-05  max resid 0.0002044182 
## ... Similar to previous best
## Run 86 stress 0.07263932 
## Run 87 stress 0.08013059 
## Run 88 stress 0.08028806 
## Run 89 stress 0.0843384 
## Run 90 stress 0.07081961 
## ... Procrustes: rmse 0.01429578  max resid 0.03117511 
## Run 91 stress 0.09109118 
## Run 92 stress 0.07263938 
## Run 93 stress 0.08013059 
## Run 94 stress 0.09109113 
## Run 95 stress 0.08013059 
## Run 96 stress 0.08013059 
## Run 97 stress 0.07263929 
## Run 98 stress 0.07263929 
## Run 99 stress 0.08199752 
## Run 100 stress 0.08013059 
## Run 101 stress 0.07081965 
## ... Procrustes: rmse 0.01422357  max resid 0.03109471 
## Run 102 stress 0.08028807 
## Run 103 stress 0.08028806 
## Run 104 stress 0.07081967 
## ... Procrustes: rmse 0.01420383  max resid 0.03107301 
## Run 105 stress 0.08199753 
## Run 106 stress 0.09109114 
## Run 107 stress 0.08013059 
## Run 108 stress 0.08028807 
## Run 109 stress 0.08028806 
## Run 110 stress 0.08013059 
## Run 111 stress 0.08028806 
## Run 112 stress 0.08433845 
## Run 113 stress 0.08028807 
## Run 114 stress 0.07263929 
## Run 115 stress 0.07081965 
## ... Procrustes: rmse 0.01422292  max resid 0.03109463 
## Run 116 stress 0.08028806 
## Run 117 stress 0.08679565 
## Run 118 stress 0.07263929 
## Run 119 stress 0.07063388 
## ... Procrustes: rmse 0.000150382  max resid 0.0004115433 
## ... Similar to previous best
## Run 120 stress 0.08199753 
## Run 121 stress 0.07081962 
## ... Procrustes: rmse 0.01430211  max resid 0.03118049 
## Run 122 stress 0.07063387 
## ... Procrustes: rmse 0.0001374305  max resid 0.0003763995 
## ... Similar to previous best
## Run 123 stress 0.0726393 
## Run 124 stress 0.07081967 
## ... Procrustes: rmse 0.01435682  max resid 0.03123882 
## Run 125 stress 0.08199752 
## Run 126 stress 0.08679567 
## Run 127 stress 0.07081968 
## ... Procrustes: rmse 0.01436516  max resid 0.03124821 
## Run 128 stress 0.08028807 
## Run 129 stress 0.08679566 
## Run 130 stress 0.08679568 
## Run 131 stress 0.07063391 
## ... Procrustes: rmse 0.0001768843  max resid 0.0004845858 
## ... Similar to previous best
## Run 132 stress 0.07263929 
## Run 133 stress 0.0726393 
## Run 134 stress 0.08013059 
## Run 135 stress 0.07081966 
## ... Procrustes: rmse 0.01421589  max resid 0.03108847 
## Run 136 stress 0.09109112 
## Run 137 stress 0.07081975 
## ... Procrustes: rmse 0.01416705  max resid 0.03103413 
## Run 138 stress 0.08679564 
## Run 139 stress 0.07263929 
## Run 140 stress 0.08013059 
## Run 141 stress 0.07081962 
## ... Procrustes: rmse 0.01425034  max resid 0.03112416 
## Run 142 stress 0.07081962 
## ... Procrustes: rmse 0.01425371  max resid 0.03112897 
## Run 143 stress 0.0959007 
## Run 144 stress 0.0867957 
## Run 145 stress 0.08028806 
## Run 146 stress 0.08433841 
## Run 147 stress 0.08199753 
## Run 148 stress 0.07263929 
## Run 149 stress 0.08028806 
## Run 150 stress 0.07063383 
## ... Procrustes: rmse 8.429331e-05  max resid 0.0002298083 
## ... Similar to previous best
## Run 151 stress 0.08028806 
## Run 152 stress 0.0726393 
## Run 153 stress 0.08028806 
## Run 154 stress 0.08013061 
## Run 155 stress 0.07081961 
## ... Procrustes: rmse 0.01429539  max resid 0.03117199 
## Run 156 stress 0.08199752 
## Run 157 stress 0.08028807 
## Run 158 stress 0.07081973 
## ... Procrustes: rmse 0.01417451  max resid 0.03104143 
## Run 159 stress 0.08013059 
## Run 160 stress 0.08199753 
## Run 161 stress 0.07063383 
## ... Procrustes: rmse 7.825174e-05  max resid 0.0002143279 
## ... Similar to previous best
## Run 162 stress 0.08679565 
## Run 163 stress 0.07081966 
## ... Procrustes: rmse 0.01434689  max resid 0.03122701 
## Run 164 stress 0.07081962 
## ... Procrustes: rmse 0.01431822  max resid 0.03119753 
## Run 165 stress 0.08013063 
## Run 166 stress 0.07263931 
## Run 167 stress 0.08028806 
## Run 168 stress 0.07081961 
## ... Procrustes: rmse 0.01430191  max resid 0.03118062 
## Run 169 stress 0.08679565 
## Run 170 stress 0.07063389 
## ... Procrustes: rmse 0.0001317398  max resid 0.0003557566 
## ... Similar to previous best
## Run 171 stress 0.07081968 
## ... Procrustes: rmse 0.01420734  max resid 0.03107967 
## Run 172 stress 0.08028806 
## Run 173 stress 0.08199755 
## Run 174 stress 0.08028807 
## Run 175 stress 0.08199752 
## Run 176 stress 0.07081962 
## ... Procrustes: rmse 0.01425387  max resid 0.03112705 
## Run 177 stress 0.07063381 
## ... Procrustes: rmse 1.775484e-05  max resid 4.784436e-05 
## ... Similar to previous best
## Run 178 stress 0.08199753 
## Run 179 stress 0.08679565 
## Run 180 stress 0.08199752 
## Run 181 stress 0.08199752 
## Run 182 stress 0.07081972 
## ... Procrustes: rmse 0.01418382  max resid 0.03105275 
## Run 183 stress 0.07263929 
## Run 184 stress 0.0801306 
## Run 185 stress 0.09109121 
## Run 186 stress 0.07263934 
## Run 187 stress 0.07081971 
## ... Procrustes: rmse 0.01437116  max resid 0.031258 
## Run 188 stress 0.08013059 
## Run 189 stress 0.08679564 
## Run 190 stress 0.07081969 
## ... Procrustes: rmse 0.01436977  max resid 0.03125371 
## Run 191 stress 0.07063388 
## ... Procrustes: rmse 0.0001510932  max resid 0.000413399 
## ... Similar to previous best
## Run 192 stress 0.08679565 
## Run 193 stress 0.08679565 
## Run 194 stress 0.07081971 
## ... Procrustes: rmse 0.01438225  max resid 0.03126758 
## Run 195 stress 0.07263929 
## Run 196 stress 0.08028806 
## Run 197 stress 0.07081961 
## ... Procrustes: rmse 0.01428678  max resid 0.03116459 
## Run 198 stress 0.07081961 
## ... Procrustes: rmse 0.01428318  max resid 0.03116024 
## Run 199 stress 0.08199754 
## Run 200 stress 0.09590076 
## Run 201 stress 0.08679565 
## Run 202 stress 0.08679565 
## Run 203 stress 0.07063381 
## ... Procrustes: rmse 1.089782e-05  max resid 2.97928e-05 
## ... Similar to previous best
## Run 204 stress 0.07081983 
## ... Procrustes: rmse 0.01414056  max resid 0.03100407 
## Run 205 stress 0.07263929 
## Run 206 stress 0.0843384 
## Run 207 stress 0.09576452 
## Run 208 stress 0.0726393 
## Run 209 stress 0.08433838 
## Run 210 stress 0.08013059 
## Run 211 stress 0.08199752 
## Run 212 stress 0.08199757 
## Run 213 stress 0.07081966 
## ... Procrustes: rmse 0.01422222  max resid 0.03109105 
## Run 214 stress 0.07063391 
## ... Procrustes: rmse 0.0001496024  max resid 0.0004053477 
## ... Similar to previous best
## Run 215 stress 0.07081961 
## ... Procrustes: rmse 0.014263  max resid 0.03113844 
## Run 216 stress 0.07081961 
## ... Procrustes: rmse 0.01427665  max resid 0.03115588 
## Run 217 stress 0.08679566 
## Run 218 stress 0.07263929 
## Run 219 stress 0.08028806 
## Run 220 stress 0.07081963 
## ... Procrustes: rmse 0.01423366  max resid 0.03110581 
## Run 221 stress 0.08028807 
## Run 222 stress 0.07081968 
## ... Procrustes: rmse 0.01420332  max resid 0.03107296 
## Run 223 stress 0.0726393 
## Run 224 stress 0.07063383 
## ... Procrustes: rmse 5.51975e-05  max resid 0.0001480196 
## ... Similar to previous best
## Run 225 stress 0.09109113 
## Run 226 stress 0.07063388 
## ... Procrustes: rmse 0.0001410247  max resid 0.000383789 
## ... Similar to previous best
## Run 227 stress 0.07081963 
## ... Procrustes: rmse 0.01432474  max resid 0.03120498 
## Run 228 stress 0.08199756 
## Run 229 stress 0.08013059 
## Run 230 stress 0.08679565 
## Run 231 stress 0.0843384 
## Run 232 stress 0.08028807 
## Run 233 stress 0.08679564 
## Run 234 stress 0.08679564 
## Run 235 stress 0.0726393 
## Run 236 stress 0.07063381 
## ... Procrustes: rmse 3.382482e-05  max resid 9.358182e-05 
## ... Similar to previous best
## Run 237 stress 0.07081961 
## ... Procrustes: rmse 0.01427328  max resid 0.03115048 
## Run 238 stress 0.08199753 
## Run 239 stress 0.08199752 
## Run 240 stress 0.09109113 
## Run 241 stress 0.07081975 
## ... Procrustes: rmse 0.01417027  max resid 0.03103504 
## Run 242 stress 0.07081968 
## ... Procrustes: rmse 0.0143641  max resid 0.0312477 
## Run 243 stress 0.08028807 
## Run 244 stress 0.07081974 
## ... Procrustes: rmse 0.01439651  max resid 0.03128098 
## Run 245 stress 0.08028806 
## Run 246 stress 0.07081961 
## ... Procrustes: rmse 0.01429791  max resid 0.03117556 
## Run 247 stress 0.08679565 
## Run 248 stress 0.07063386 
## ... Procrustes: rmse 0.0001153285  max resid 0.000316423 
## ... Similar to previous best
## Run 249 stress 0.0801306 
## Run 250 stress 0.08013059 
## Run 251 stress 0.08028806 
## Run 252 stress 0.08433842 
## Run 253 stress 0.07081968 
## ... Procrustes: rmse 0.0142019  max resid 0.03107009 
## Run 254 stress 0.07263932 
## Run 255 stress 0.07081963 
## ... Procrustes: rmse 0.01423339  max resid 0.03110617 
## Run 256 stress 0.08013059 
## Run 257 stress 0.07081961 
## ... Procrustes: rmse 0.01429778  max resid 0.03117646 
## Run 258 stress 0.08028807 
## Run 259 stress 0.07063384 
## ... Procrustes: rmse 8.345143e-05  max resid 0.0002253497 
## ... Similar to previous best
## Run 260 stress 0.08013059 
## Run 261 stress 0.07263931 
## Run 262 stress 0.07263931 
## Run 263 stress 0.07263931 
## Run 264 stress 0.07081965 
## ... Procrustes: rmse 0.01422525  max resid 0.03109904 
## Run 265 stress 0.08028808 
## Run 266 stress 0.08679564 
## Run 267 stress 0.07081961 
## ... Procrustes: rmse 0.0143  max resid 0.03117936 
## Run 268 stress 0.08028809 
## Run 269 stress 0.0726393 
## Run 270 stress 0.09109115 
## Run 271 stress 0.08679564 
## Run 272 stress 0.08679564 
## Run 273 stress 0.08013059 
## Run 274 stress 0.0801306 
## Run 275 stress 0.08028807 
## Run 276 stress 0.07063384 
## ... Procrustes: rmse 9.568844e-05  max resid 0.0002614002 
## ... Similar to previous best
## Run 277 stress 0.08679568 
## Run 278 stress 0.08199752 
## Run 279 stress 0.08199752 
## Run 280 stress 0.07081975 
## ... Procrustes: rmse 0.01416876  max resid 0.03103664 
## Run 281 stress 0.08433842 
## Run 282 stress 0.07081967 
## ... Procrustes: rmse 0.01421004  max resid 0.03107947 
## Run 283 stress 0.09109116 
## Run 284 stress 0.08013059 
## Run 285 stress 0.08433843 
## Run 286 stress 0.08013061 
## Run 287 stress 0.07263929 
## Run 288 stress 0.07081962 
## ... Procrustes: rmse 0.01431869  max resid 0.03119823 
## Run 289 stress 0.08199753 
## Run 290 stress 0.07081961 
## ... Procrustes: rmse 0.01428055  max resid 0.03116002 
## Run 291 stress 0.09109119 
## Run 292 stress 0.07063391 
## ... Procrustes: rmse 0.0001621985  max resid 0.0004469252 
## ... Similar to previous best
## Run 293 stress 0.08199752 
## Run 294 stress 0.07263929 
## Run 295 stress 0.0801306 
## Run 296 stress 0.07063388 
## ... Procrustes: rmse 0.0001310701  max resid 0.0003553815 
## ... Similar to previous best
## Run 297 stress 0.08199753 
## Run 298 stress 0.07081962 
## ... Procrustes: rmse 0.01431736  max resid 0.03119724 
## Run 299 stress 0.07263932 
## Run 300 stress 0.08028807 
## Run 301 stress 0.08013059 
## Run 302 stress 0.07081972 
## ... Procrustes: rmse 0.01417822  max resid 0.03104458 
## Run 303 stress 0.08679567 
## Run 304 stress 0.08028807 
## Run 305 stress 0.0726393 
## Run 306 stress 0.07081961 
## ... Procrustes: rmse 0.01426856  max resid 0.03114448 
## Run 307 stress 0.08028806 
## Run 308 stress 0.08199756 
## Run 309 stress 0.0801306 
## Run 310 stress 0.07081971 
## ... Procrustes: rmse 0.0141865  max resid 0.03105583 
## Run 311 stress 0.08028806 
## Run 312 stress 0.07063381 
## ... Procrustes: rmse 2.300385e-05  max resid 6.265534e-05 
## ... Similar to previous best
## Run 313 stress 0.08679575 
## Run 314 stress 0.07263929 
## Run 315 stress 0.08199752 
## Run 316 stress 0.07081963 
## ... Procrustes: rmse 0.01423643  max resid 0.03110854 
## Run 317 stress 0.07063382 
## ... Procrustes: rmse 4.470335e-05  max resid 0.0001214088 
## ... Similar to previous best
## Run 318 stress 0.07081961 
## ... Procrustes: rmse 0.0143001  max resid 0.03117852 
## Run 319 stress 0.08028806 
## Run 320 stress 0.08433838 
## Run 321 stress 0.08013059 
## Run 322 stress 0.07081969 
## ... Procrustes: rmse 0.01419293  max resid 0.03106106 
## Run 323 stress 0.0867957 
## Run 324 stress 0.08013059 
## Run 325 stress 0.07081961 
## ... Procrustes: rmse 0.01425843  max resid 0.03113421 
## Run 326 stress 0.0843384 
## Run 327 stress 0.07063391 
## ... Procrustes: rmse 0.0001636314  max resid 0.0004500007 
## ... Similar to previous best
## Run 328 stress 0.07063383 
## ... Procrustes: rmse 7.525411e-05  max resid 0.0002040844 
## ... Similar to previous best
## Run 329 stress 0.07081965 
## ... Procrustes: rmse 0.01434722  max resid 0.03122915 
## Run 330 stress 0.07081961 
## ... Procrustes: rmse 0.01427817  max resid 0.03115457 
## Run 331 stress 0.07263929 
## Run 332 stress 0.08013061 
## Run 333 stress 0.08028808 
## Run 334 stress 0.07263929 
## Run 335 stress 0.07081961 
## ... Procrustes: rmse 0.01430478  max resid 0.031184 
## Run 336 stress 0.0726393 
## Run 337 stress 0.08013059 
## Run 338 stress 0.07263929 
## Run 339 stress 0.08199753 
## Run 340 stress 0.07263931 
## Run 341 stress 0.08199753 
## Run 342 stress 0.07263931 
## Run 343 stress 0.07081962 
## ... Procrustes: rmse 0.01431172  max resid 0.0311921 
## Run 344 stress 0.0726393 
## Run 345 stress 0.07081963 
## ... Procrustes: rmse 0.01424253  max resid 0.03111449 
## Run 346 stress 0.08028806 
## Run 347 stress 0.08028806 
## Run 348 stress 0.0843384 
## Run 349 stress 0.07081963 
## ... Procrustes: rmse 0.01423637  max resid 0.03111005 
## Run 350 stress 0.08199752 
## Run 351 stress 0.07263931 
## Run 352 stress 0.07081961 
## ... Procrustes: rmse 0.0142946  max resid 0.03117201 
## Run 353 stress 0.07081981 
## ... Procrustes: rmse 0.01414497  max resid 0.03100828 
## Run 354 stress 0.07081975 
## ... Procrustes: rmse 0.01438755  max resid 0.03126908 
## Run 355 stress 0.07063383 
## ... Procrustes: rmse 8.958965e-05  max resid 0.0002457189 
## ... Similar to previous best
## Run 356 stress 0.08028807 
## Run 357 stress 0.07081963 
## ... Procrustes: rmse 0.01424504  max resid 0.03111978 
## Run 358 stress 0.08199752 
## Run 359 stress 0.07263929 
## Run 360 stress 0.08013059 
## Run 361 stress 0.07063383 
## ... Procrustes: rmse 7.111712e-05  max resid 0.0001968363 
## ... Similar to previous best
## Run 362 stress 0.08679565 
## Run 363 stress 0.07263929 
## Run 364 stress 0.08199752 
## Run 365 stress 0.0843384 
## Run 366 stress 0.07081963 
## ... Procrustes: rmse 0.01423595  max resid 0.03110921 
## Run 367 stress 0.08199752 
## Run 368 stress 0.08013059 
## Run 369 stress 0.07081962 
## ... Procrustes: rmse 0.01424905  max resid 0.03112362 
## Run 370 stress 0.08679565 
## Run 371 stress 0.0726393 
## Run 372 stress 0.08433848 
## Run 373 stress 0.08028806 
## Run 374 stress 0.07081969 
## ... Procrustes: rmse 0.01436989  max resid 0.03125476 
## Run 375 stress 0.07263929 
## Run 376 stress 0.08028806 
## Run 377 stress 0.08433845 
## Run 378 stress 0.08199752 
## Run 379 stress 0.0708197 
## ... Procrustes: rmse 0.01418888  max resid 0.03105651 
## Run 380 stress 0.07081974 
## ... Procrustes: rmse 0.01439272  max resid 0.03127962 
## Run 381 stress 0.08199753 
## Run 382 stress 0.07063388 
## ... Procrustes: rmse 0.0001530937  max resid 0.0004193015 
## ... Similar to previous best
## Run 383 stress 0.08199752 
## Run 384 stress 0.08013059 
## Run 385 stress 0.08199752 
## Run 386 stress 0.07263929 
## Run 387 stress 0.08679568 
## Run 388 stress 0.07081969 
## ... Procrustes: rmse 0.01419712  max resid 0.03106547 
## Run 389 stress 0.07263929 
## Run 390 stress 0.07063389 
## ... Procrustes: rmse 0.0001473167  max resid 0.0003999417 
## ... Similar to previous best
## Run 391 stress 0.08679567 
## Run 392 stress 0.08199752 
## Run 393 stress 0.07063386 
## ... Procrustes: rmse 0.0001186927  max resid 0.0003246023 
## ... Similar to previous best
## Run 394 stress 0.07063383 
## ... Procrustes: rmse 7.632437e-05  max resid 0.0002090965 
## ... Similar to previous best
## Run 395 stress 0.08433849 
## Run 396 stress 0.07081965 
## ... Procrustes: rmse 0.01434319  max resid 0.03122356 
## Run 397 stress 0.08028807 
## Run 398 stress 0.08013059 
## Run 399 stress 0.08679565 
## Run 400 stress 0.2845319 
## Run 401 stress 0.07081964 
## ... Procrustes: rmse 0.01423058  max resid 0.03110431 
## Run 402 stress 0.07081975 
## ... Procrustes: rmse 0.01416635  max resid 0.03103212 
## Run 403 stress 0.07081965 
## ... Procrustes: rmse 0.0142214  max resid 0.03109254 
## Run 404 stress 0.07081973 
## ... Procrustes: rmse 0.01439163  max resid 0.03127558 
## Run 405 stress 0.07263929 
## Run 406 stress 0.08199752 
## Run 407 stress 0.08679564 
## Run 408 stress 0.08028807 
## Run 409 stress 0.08199752 
## Run 410 stress 0.0726393 
## Run 411 stress 0.08028808 
## Run 412 stress 0.07263929 
## Run 413 stress 0.07263929 
## Run 414 stress 0.08679568 
## Run 415 stress 0.08013059 
## Run 416 stress 0.0726393 
## Run 417 stress 0.08028807 
## Run 418 stress 0.08433843 
## Run 419 stress 0.08199752 
## Run 420 stress 0.08199752 
## Run 421 stress 0.08028806 
## Run 422 stress 0.07081972 
## ... Procrustes: rmse 0.01418406  max resid 0.03105358 
## Run 423 stress 0.08679564 
## Run 424 stress 0.08013059 
## Run 425 stress 0.07081964 
## ... Procrustes: rmse 0.01422858  max resid 0.03110181 
## Run 426 stress 0.07263931 
## Run 427 stress 0.08199754 
## Run 428 stress 0.08199752 
## Run 429 stress 0.07081971 
## ... Procrustes: rmse 0.01438133  max resid 0.03126661 
## Run 430 stress 0.09241919 
## Run 431 stress 0.0708197 
## ... Procrustes: rmse 0.01437306  max resid 0.03125485 
## Run 432 stress 0.0726393 
## Run 433 stress 0.07063381 
## ... Procrustes: rmse 2.124456e-05  max resid 4.228447e-05 
## ... Similar to previous best
## Run 434 stress 0.08199752 
## Run 435 stress 0.07263932 
## Run 436 stress 0.08013059 
## Run 437 stress 0.07063386 
## ... Procrustes: rmse 0.0001015807  max resid 0.0002742963 
## ... Similar to previous best
## Run 438 stress 0.0726393 
## Run 439 stress 0.0726393 
## Run 440 stress 0.08028806 
## Run 441 stress 0.08013059 
## Run 442 stress 0.08028806 
## Run 443 stress 0.07263929 
## Run 444 stress 0.07063382 
## ... Procrustes: rmse 4.734342e-05  max resid 0.0001261375 
## ... Similar to previous best
## Run 445 stress 0.07081969 
## ... Procrustes: rmse 0.01437442  max resid 0.03125855 
## Run 446 stress 0.07263929 
## Run 447 stress 0.0801306 
## Run 448 stress 0.08028806 
## Run 449 stress 0.07081969 
## ... Procrustes: rmse 0.01437089  max resid 0.03125551 
## Run 450 stress 0.0843384 
## Run 451 stress 0.07263929 
## Run 452 stress 0.0726393 
## Run 453 stress 0.09109114 
## Run 454 stress 0.08013059 
## Run 455 stress 0.08013059 
## Run 456 stress 0.07081971 
## ... Procrustes: rmse 0.01419009  max resid 0.03105597 
## Run 457 stress 0.07263929 
## Run 458 stress 0.07399338 
## Run 459 stress 0.07263929 
## Run 460 stress 0.08013059 
## Run 461 stress 0.08028807 
## Run 462 stress 0.09109113 
## Run 463 stress 0.07263929 
## Run 464 stress 0.09109115 
## Run 465 stress 0.08679565 
## Run 466 stress 0.0726393 
## Run 467 stress 0.08028807 
## Run 468 stress 0.08679565 
## Run 469 stress 0.08028807 
## Run 470 stress 0.07263929 
## Run 471 stress 0.07081966 
## ... Procrustes: rmse 0.01420969  max resid 0.03108027 
## Run 472 stress 0.07263929 
## Run 473 stress 0.07081962 
## ... Procrustes: rmse 0.01431928  max resid 0.03119962 
## Run 474 stress 0.07081962 
## ... Procrustes: rmse 0.01424653  max resid 0.03111957 
## Run 475 stress 0.08679566 
## Run 476 stress 0.08028806 
## Run 477 stress 0.07263929 
## Run 478 stress 0.07263929 
## Run 479 stress 0.08028808 
## Run 480 stress 0.08199753 
## Run 481 stress 0.08433843 
## Run 482 stress 0.08028808 
## Run 483 stress 0.08433839 
## Run 484 stress 0.09242 
## Run 485 stress 0.07263929 
## Run 486 stress 0.07081968 
## ... Procrustes: rmse 0.0143655  max resid 0.03124935 
## Run 487 stress 0.09241948 
## Run 488 stress 0.08013059 
## Run 489 stress 0.07081978 
## ... Procrustes: rmse 0.01415635  max resid 0.03101971 
## Run 490 stress 0.08199752 
## Run 491 stress 0.09109118 
## Run 492 stress 0.07081961 
## ... Procrustes: rmse 0.01428679  max resid 0.03116347 
## Run 493 stress 0.08013059 
## Run 494 stress 0.08013059 
## Run 495 stress 0.09109113 
## Run 496 stress 0.08028809 
## Run 497 stress 0.08199752 
## Run 498 stress 0.08028806 
## Run 499 stress 0.09109116 
## Run 500 stress 0.08199752 
## *** Best solution repeated 32 times
## Dice-Sørensen
# All sites 
spresb_NMDS <- metaMDS(spresb_dist, try = 1000, parallel = 4)
## Run 0 stress 0.09072551 
## Run 1 stress 0.09012992 
## ... New best solution
## ... Procrustes: rmse 0.02527372  max resid 0.08903269 
## Run 2 stress 0.1068691 
## Run 3 stress 0.09072308 
## Run 4 stress 0.09677541 
## Run 5 stress 0.09072311 
## Run 6 stress 0.09072546 
## Run 7 stress 0.09161036 
## Run 8 stress 0.09172712 
## Run 9 stress 0.09702959 
## Run 10 stress 0.09161029 
## Run 11 stress 0.1077951 
## Run 12 stress 0.0907231 
## Run 13 stress 0.0912341 
## Run 14 stress 0.09646576 
## Run 15 stress 0.1073656 
## Run 16 stress 0.091629 
## Run 17 stress 0.0964678 
## Run 18 stress 0.09396303 
## Run 19 stress 0.1093943 
## Run 20 stress 0.1067328 
## *** Best solution was not repeated -- monoMDS stopping criteria:
##     20: stress ratio > sratmax
# Mixed and stratified lakes
spresbms_NMDS <- metaMDS(spresbms_dist, try = 1000, parallel = 4)
## Run 0 stress 0.08659677 
## Run 1 stress 0.09610452 
## Run 2 stress 0.0961045 
## Run 3 stress 0.0870998 
## Run 4 stress 0.09974303 
## Run 5 stress 0.09610472 
## Run 6 stress 0.09769941 
## Run 7 stress 0.08709981 
## Run 8 stress 0.08709983 
## Run 9 stress 0.08709978 
## Run 10 stress 0.100908 
## Run 11 stress 0.08709978 
## Run 12 stress 0.09719298 
## Run 13 stress 0.08659685 
## ... Procrustes: rmse 7.952364e-05  max resid 0.0001672202 
## ... Similar to previous best
## Run 14 stress 0.09610452 
## Run 15 stress 0.08659679 
## ... Procrustes: rmse 3.427132e-05  max resid 7.298812e-05 
## ... Similar to previous best
## Run 16 stress 0.1017605 
## Run 17 stress 0.09659296 
## Run 18 stress 0.08709989 
## Run 19 stress 0.09669161 
## Run 20 stress 0.09847318 
## *** Best solution repeated 2 times
# Ocean sites and mixed lakes
spresbom_NMDS <- metaMDS(spresbom_dist, try = 1000, parallel = 4)
## Run 0 stress 0.06881667 
## Run 1 stress 0.06973604 
## Run 2 stress 0.06961699 
## Run 3 stress 0.07332545 
## Run 4 stress 0.06881667 
## ... Procrustes: rmse 1.992341e-05  max resid 4.655303e-05 
## ... Similar to previous best
## Run 5 stress 0.06973603 
## Run 6 stress 0.06961726 
## Run 7 stress 0.06961768 
## Run 8 stress 0.06881667 
## ... New best solution
## ... Procrustes: rmse 1.946106e-05  max resid 4.394894e-05 
## ... Similar to previous best
## Run 9 stress 0.07430898 
## Run 10 stress 0.3106852 
## Run 11 stress 0.06961776 
## Run 12 stress 0.06881668 
## ... Procrustes: rmse 3.330181e-05  max resid 7.009159e-05 
## ... Similar to previous best
## Run 13 stress 0.07611897 
## Run 14 stress 0.06881669 
## ... Procrustes: rmse 9.876388e-05  max resid 0.0002317418 
## ... Similar to previous best
## Run 15 stress 0.06881668 
## ... Procrustes: rmse 2.642974e-05  max resid 5.741425e-05 
## ... Similar to previous best
## Run 16 stress 0.06961866 
## Run 17 stress 0.06951398 
## Run 18 stress 0.06961794 
## Run 19 stress 0.06881672 
## ... Procrustes: rmse 0.0001389615  max resid 0.0003262665 
## ... Similar to previous best
## Run 20 stress 0.06961849 
## *** Best solution repeated 5 times
# Stratified lakes and ocean sites
spresbso_NMDS <- metaMDS(spresbso_dist, try = 1000, parallel = 4)
## Run 0 stress 0.08013059 
## Run 1 stress 0.08679565 
## Run 2 stress 0.07081966 
## ... New best solution
## ... Procrustes: rmse 0.1003425  max resid 0.2612304 
## Run 3 stress 0.08199754 
## Run 4 stress 0.07063391 
## ... New best solution
## ... Procrustes: rmse 0.01410921  max resid 0.03118583 
## Run 5 stress 0.09109114 
## Run 6 stress 0.08679565 
## Run 7 stress 0.08679565 
## Run 8 stress 0.07081965 
## ... Procrustes: rmse 0.01411174  max resid 0.0309457 
## Run 9 stress 0.08013059 
## Run 10 stress 0.08028806 
## Run 11 stress 0.08028806 
## Run 12 stress 0.07063385 
## ... New best solution
## ... Procrustes: rmse 7.728451e-05  max resid 0.0002102095 
## ... Similar to previous best
## Run 13 stress 0.07081971 
## ... Procrustes: rmse 0.01412376  max resid 0.03097022 
## Run 14 stress 0.07063384 
## ... New best solution
## ... Procrustes: rmse 9.440731e-06  max resid 2.551935e-05 
## ... Similar to previous best
## Run 15 stress 0.08028807 
## Run 16 stress 0.07063389 
## ... Procrustes: rmse 6.04064e-05  max resid 0.0001639898 
## ... Similar to previous best
## Run 17 stress 0.07081961 
## ... Procrustes: rmse 0.01423503  max resid 0.03109732 
## Run 18 stress 0.08013059 
## Run 19 stress 0.07081979 
## ... Procrustes: rmse 0.01409855  max resid 0.03094419 
## Run 20 stress 0.08679569 
## *** Best solution repeated 2 times

Determine stratification homogeneity using incidences

We use betadisper to determine homogeneity of the presence absence data based on the stratification category. Is the dispersion of incidences similar between the different stratifications.

## Stratification
# Jaccard
stratification_group_jpres_bd <- betadisper(jpres_dist, stratification_group)
anova(stratification_group_jpres_bd)
## Analysis of Variance Table
## 
## Response: Distances
##           Df   Sum Sq   Mean Sq F value Pr(>F)
## Groups     2 0.001495 0.0007473  0.1275  0.881
## Residuals 19 0.111356 0.0058609
permutest(stratification_group_jpres_bd, pairwise = TRUE)
## 
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
## 
## Response: Distances
##           Df   Sum Sq   Mean Sq      F N.Perm Pr(>F)
## Groups     2 0.001495 0.0007473 0.1275    999  0.885
## Residuals 19 0.111356 0.0058609                     
## 
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
##              Mixed   Ocean Stratified
## Mixed              0.82800      0.393
## Ocean      0.83147              0.867
## Stratified 0.41321 0.85898
(stratification_group_jpres_bd.HSD <- TukeyHSD(stratification_group_jpres_bd))
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                         diff         lwr       upr     p adj
## Ocean-Mixed      0.010393222 -0.09464200 0.1154284 0.9658276
## Stratified-Mixed 0.019315395 -0.07792832 0.1165591 0.8699882
## Stratified-Ocean 0.008922173 -0.09611305 0.1139574 0.9746887
boxplot(stratification_group_jpres_bd)

# Dice-Sørensen
stratification_group_spres_bd <- betadisper(spres_dist, stratification_group)
anova(stratification_group_spres_bd)
## Analysis of Variance Table
## 
## Response: Distances
##           Df   Sum Sq   Mean Sq F value Pr(>F)
## Groups     2 0.004075 0.0020373  0.1745 0.8412
## Residuals 19 0.221851 0.0116764
permutest(stratification_group_spres_bd, pairwise = TRUE)
## 
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
## 
## Response: Distances
##           Df   Sum Sq   Mean Sq      F N.Perm Pr(>F)
## Groups     2 0.004075 0.0020373 0.1745    999  0.847
## Residuals 19 0.221851 0.0116764                     
## 
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
##              Mixed   Ocean Stratified
## Mixed              0.72500      0.374
## Ocean      0.71901              0.943
## Stratified 0.36777 0.93989
(stratification_group_spres_bd.HSD <- TukeyHSD(stratification_group_spres_bd))
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                         diff        lwr       upr     p adj
## Ocean-Mixed      0.024910614 -0.1233440 0.1731653 0.9049381
## Stratified-Mixed 0.030232187 -0.1070249 0.1674893 0.8428610
## Stratified-Ocean 0.005321574 -0.1429331 0.1535762 0.9954271
boxplot(stratification_group_spres_bd)

Determine stratification dissimilarity using incidences

We use adonis to determine if dissimilarities of species incidences by stratification categories are significant and how much of the variation is explained by incidence dissimilarities.

### Stratification
## Jaccard
# All sites
jpres_pms <- adonis2(jpres_dist ~ env[-20,19], permutations = 999)
jpres_pms
## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
## 
## adonis2(formula = jpres_dist ~ env[-20, 19], permutations = 999)
##              Df SumOfSqs      R2      F Pr(>F)    
## env[-20, 19]  2   2.1042 0.25523 3.2556  0.001 ***
## Residual     19   6.1401 0.74477                  
## Total        21   8.2443 1.00000                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
# By stratifcation
jpres_pms_pair <- pairwise.adonis(jpres_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
jpres_pms_pair
##                 pairs Df SumsOfSqs  F.Model        R2 p.value p.adjusted sig
## 1 Stratified vs Mixed  1 1.3139866 4.158150 0.2289964   0.001      0.003   *
## 2 Stratified vs Ocean  1 1.3049256 3.903468 0.2454476   0.001      0.003   *
## 3      Mixed vs Ocean  1 0.4999441 1.560433 0.1150725   0.056      0.168
## Dice-Sørensen
# All sites
spres_pms <- adonis2(spres_dist ~ env[-20,19], permutations = 999)
spres_pms
## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
## 
## adonis2(formula = spres_dist ~ env[-20, 19], permutations = 999)
##              Df SumOfSqs     R2      F Pr(>F)    
## env[-20, 19]  2   2.5015 0.3572 5.2792  0.001 ***
## Residual     19   4.5016 0.6428                  
## Total        21   7.0032 1.0000                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
# By stratifcation
spres_pms_pair <- pairwise.adonis(spres_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
spres_pms_pair
##                 pairs Df SumsOfSqs  F.Model        R2 p.value p.adjusted sig
## 1 Stratified vs Mixed  1 1.6177889 7.163751 0.3384916   0.001      0.003   *
## 2 Stratified vs Ocean  1 1.6459069 6.509883 0.3516977   0.001      0.003   *
## 3      Mixed vs Ocean  1 0.4361964 1.864338 0.1344700   0.074      0.222

Envfit environmental influence on incidences

We use envfit to determine significantly correlated environmental variables to our NMDS. We will use these results, if significant, in our figure.

### Environmental
## Jaccard
# All sites for figure
jprese_ef <- envfit(jprese_NMDS, env[-c(9,16,18,20),c(36)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jprese_ef
## 
## ***VECTORS
## 
##        NMDS1   NMDS2     r2   Pr(>r)   
## [1,] 0.94641 0.32296 0.8332 0.002997 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jprese_efp <- p.adjust.envfit(jprese_ef)
## Adjustment of significance by bonferroni method
jprese_efp
## 
## ***VECTORS
## 
##        NMDS1   NMDS2     r2   Pr(>r)   
## [1,] 0.94641 0.32296 0.8332 0.002997 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
jpresea_ef <- envfit(jprese_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jpresea_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2   Pr(>r)   
## temperature_median -0.48785 -0.87293 0.0586 0.837163   
## salinity_median     0.99783 -0.06587 0.7388 0.038961 * 
## oxygen_median       0.79309  0.60911 0.5361 0.810190   
## pH_median           0.94641  0.32296 0.8332 0.002997 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresea_efp <- p.adjust.envfit(jpresea_ef)
## Adjustment of significance by bonferroni method
jpresea_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median -0.48785 -0.87293 0.0586 1.00000  
## salinity_median     0.99783 -0.06587 0.7388 0.15584  
## oxygen_median       0.79309  0.60911 0.5361 1.00000  
## pH_median           0.94641  0.32296 0.8332 0.01199 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
jpresems_ef <- envfit(jpresems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(10)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jpresems_ef
## 
## ***VECTORS
## 
##        NMDS1   NMDS2    r2   Pr(>r)    
## [1,] 0.96335 0.26825 0.803 0.000999 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresems_efp <- p.adjust.envfit(jpresems_ef)
## Adjustment of significance by bonferroni method
jpresems_efp
## 
## ***VECTORS
## 
##        NMDS1   NMDS2    r2   Pr(>r)    
## [1,] 0.96335 0.26825 0.803 0.000999 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
jpreseom_ef <- envfit(jpreseom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(6)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
jpreseom_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)   
## [1,]  0.78732 -0.61655 0.7842 0.00999 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpreseom_efp <- p.adjust.envfit(jpreseom_ef)
## Adjustment of significance by bonferroni method
jpreseom_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)   
## [1,]  0.78732 -0.61655 0.7842 0.00999 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
jpreseso_ef <- envfit(jpreseso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(8)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
jpreseso_ef
## 
## ***VECTORS
## 
##          NMDS1     NMDS2     r2 Pr(>r)
## [1,] 0.0031273 1.0000000 0.7187 0.6893
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpreseso_efp <- p.adjust.envfit(jpreseso_ef)
## Adjustment of significance by bonferroni method
jpreseso_efp
## 
## ***VECTORS
## 
##          NMDS1     NMDS2     r2 Pr(>r)
## [1,] 0.0031273 1.0000000 0.7187 0.6893
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## Dice-Sørensen
# All sites 
sprese_ef <- envfit(sprese_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
sprese_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2   Pr(>r)   
## temperature_median -0.84743 -0.53091 0.0491 0.890110   
## salinity_median     0.99772 -0.06748 0.7375 0.032967 * 
## oxygen_median       0.80429  0.59423 0.5363 0.822178   
## pH_median           0.95061  0.31039 0.8373 0.002997 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
sprese_efp <- p.adjust.envfit(sprese_ef)
## Adjustment of significance by bonferroni method
sprese_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median -0.84743 -0.53091 0.0491 1.00000  
## salinity_median     0.99772 -0.06748 0.7375 0.13187  
## oxygen_median       0.80429  0.59423 0.5363 1.00000  
## pH_median           0.95061  0.31039 0.8373 0.01199 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
spresems_ef <- envfit(spresems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
spresems_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2   Pr(>r)   
## temperature_median -0.56404 -0.82575 0.0779 0.817183   
## salinity_median     0.99172  0.12839 0.7458 0.033966 * 
## oxygen_median       0.94200  0.33563 0.3552 0.901099   
## pH_median           0.96324  0.26866 0.8030 0.001998 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spresems_efp <- p.adjust.envfit(spresems_ef)
## Adjustment of significance by bonferroni method
spresems_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2   Pr(>r)   
## temperature_median -0.56404 -0.82575 0.0779 1.000000   
## salinity_median     0.99172  0.12839 0.7458 0.135864   
## oxygen_median       0.94200  0.33563 0.3552 1.000000   
## pH_median           0.96324  0.26866 0.8030 0.007992 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
spreseom_ef <- envfit(spreseom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
spreseom_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median  0.10614  0.99435 0.0705 0.69530  
## salinity_median     0.78732 -0.61654 0.7842 0.01299 *
## oxygen_median       0.96712  0.25433 0.7188 0.05095 .
## pH_median           0.81135  0.58456 0.6420 0.02098 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spreseom_efp <- p.adjust.envfit(spreseom_ef)
## Adjustment of significance by bonferroni method
spreseom_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median  0.10614  0.99435 0.0705 1.00000  
## salinity_median     0.78732 -0.61654 0.7842 0.05195 .
## oxygen_median       0.96712  0.25433 0.7188 0.20380  
## pH_median           0.81135  0.58456 0.6420 0.08392 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
spreseso_ef <- envfit(spreseso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
spreseso_ef
## 
## ***VECTORS
## 
##                          NMDS1       NMDS2     r2  Pr(>r)  
## temperature_median -0.00026795 -1.00000000 0.0980 0.45355  
## salinity_median     0.00052976  1.00000000 0.7665 0.01399 *
## oxygen_median       0.00118659 -1.00000000 0.7948 0.12288  
## pH_median           0.00220519  1.00000000 0.6909 0.48751  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spreseso_efp <- p.adjust.envfit(spreseso_ef)
## Adjustment of significance by bonferroni method
spreseso_efp
## 
## ***VECTORS
## 
##                          NMDS1       NMDS2     r2  Pr(>r)  
## temperature_median -0.00026795 -1.00000000 0.0980 1.00000  
## salinity_median     0.00052976  1.00000000 0.7665 0.05594 .
## oxygen_median       0.00118659 -1.00000000 0.7948 0.49151  
## pH_median           0.00220519  1.00000000 0.6909 1.00000  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
jpress_ef <- envfit(jpress_NMDS, env[c(1:2,4,5,12,17,21:22),c(2,6,8,10,22:32)], permutations = 1000, na.rm = TRUE)
jpress_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## temperature_median         -0.35881 -0.93341 0.1965 0.6014
## salinity_median            -0.70036  0.71379 0.5991 0.1349
## oxygen_median               0.98543 -0.17006 0.5185 0.1678
## pH_median                  -0.98992 -0.14163 0.5058 0.1868
## volume_m3_w_chemocline     -0.99942 -0.03420 0.1624 0.6933
## volume_m3                  -0.44002 -0.89799 0.1263 0.6683
## surface_area_m2            -0.35025 -0.93666 0.2598 0.4695
## distance_to_ocean_min_m     0.63373 -0.77355 0.2151 0.5155
## distance_to_ocean_mean_m    0.01326 -0.99991 0.1726 0.5984
## distance_to_ocean_median_m -0.00456 -0.99999 0.2084 0.5544
## tidal_lag_time_minutes     -0.95579 -0.29405 0.3022 0.3916
## tidal_efficiency            0.35277  0.93571 0.0640 0.8382
## perimeter_fromSat          -0.28273 -0.95920 0.3722 0.3477
## max_depth                  -0.46293 -0.88640 0.0126 0.9640
## logArea                    -0.26513 -0.96421 0.2144 0.5624
## Permutation: free
## Number of permutations: 1000
jpress_efp <- p.adjust.envfit(jpress_ef)
## Adjustment of significance by bonferroni method
jpress_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## temperature_median         -0.35881 -0.93341 0.1965      1
## salinity_median            -0.70036  0.71379 0.5991      1
## oxygen_median               0.98543 -0.17006 0.5185      1
## pH_median                  -0.98992 -0.14163 0.5058      1
## volume_m3_w_chemocline     -0.99942 -0.03420 0.1624      1
## volume_m3                  -0.44002 -0.89799 0.1263      1
## surface_area_m2            -0.35025 -0.93666 0.2598      1
## distance_to_ocean_min_m     0.63373 -0.77355 0.2151      1
## distance_to_ocean_mean_m    0.01326 -0.99991 0.1726      1
## distance_to_ocean_median_m -0.00456 -0.99999 0.2084      1
## tidal_lag_time_minutes     -0.95579 -0.29405 0.3022      1
## tidal_efficiency            0.35277  0.93571 0.0640      1
## perimeter_fromSat          -0.28273 -0.95920 0.3722      1
## max_depth                  -0.46293 -0.88640 0.0126      1
## logArea                    -0.26513 -0.96421 0.2144      1
## Permutation: free
## Number of permutations: 1000
### Biogeographic
## Jaccard
# All sites for figure
jpresb_ef <- envfit(jpresb_NMDS, env[-c(8,20),c(47)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
jpresb_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## [1,]  0.20933 -0.97785 0.3086 0.05794 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresb_efp <- p.adjust.envfit(jpresb_ef)
## Adjustment of significance by bonferroni method
jpresb_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## [1,]  0.20933 -0.97785 0.3086 0.05794 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
jpresba_ef <- envfit(jpresb_NMDS, env[-c(8,20),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
jpresba_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2  Pr(>r)  
## volume_m3_w_chemocline      0.68420 -0.72929 0.1623 0.44855  
## volume_m3                   0.64631 -0.76307 0.1557 0.41359  
## surface_area_m2             0.43195 -0.90190 0.2799 0.20380  
## distance_to_ocean_min_m    -0.98169 -0.19050 0.6466 0.11788  
## distance_to_ocean_mean_m   -0.95198 -0.30617 0.5726 0.54246  
## distance_to_ocean_median_m -0.94460 -0.32822 0.5670 0.53447  
## tidal_lag_time_minutes     -0.99902 -0.04415 0.5908 0.69630  
## tidal_efficiency            0.99868  0.05130 0.6114 0.43257  
## perimeter_fromSat           0.53005 -0.84797 0.2175 0.37862  
## max_depth                  -0.22622 -0.97408 0.1435 0.75125  
## logArea                     0.20933 -0.97785 0.3086 0.06094 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresba_efp <- p.adjust.envfit(jpresba_ef)
## Adjustment of significance by bonferroni method
jpresba_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.68420 -0.72929 0.1623 1.0000
## volume_m3                   0.64631 -0.76307 0.1557 1.0000
## surface_area_m2             0.43195 -0.90190 0.2799 1.0000
## distance_to_ocean_min_m    -0.98169 -0.19050 0.6466 1.0000
## distance_to_ocean_mean_m   -0.95198 -0.30617 0.5726 1.0000
## distance_to_ocean_median_m -0.94460 -0.32822 0.5670 1.0000
## tidal_lag_time_minutes     -0.99902 -0.04415 0.5908 1.0000
## tidal_efficiency            0.99868  0.05130 0.6114 1.0000
## perimeter_fromSat           0.53005 -0.84797 0.2175 1.0000
## max_depth                  -0.22622 -0.97408 0.1435 1.0000
## logArea                     0.20933 -0.97785 0.3086 0.6703
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
jpresbms_ef <- envfit(jpresbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
jpresbms_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline     -0.35180  0.93608 0.0099 0.9730
## volume_m3                  -0.68236 -0.73102 0.1272 0.9051
## surface_area_m2            -0.93217  0.36201 0.0832 0.9331
## distance_to_ocean_min_m    -0.94998  0.31230 0.5323 0.1548
## distance_to_ocean_mean_m   -0.85542  0.51793 0.4286 0.4915
## distance_to_ocean_median_m -0.81025  0.58609 0.4367 0.4426
## tidal_lag_time_minutes     -0.74306  0.66923 0.4175 0.7193
## tidal_efficiency            0.58875 -0.80832 0.5328 0.1908
## perimeter_fromSat          -0.25657  0.96653 0.0917 0.7103
## max_depth                  -0.35004 -0.93674 0.1947 0.7313
## logArea                    -0.88134  0.47249 0.0201 0.9760
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresbms_efp <- p.adjust.envfit(jpresbms_ef)
## Adjustment of significance by bonferroni method
jpresbms_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline     -0.35180  0.93608 0.0099      1
## volume_m3                  -0.68236 -0.73102 0.1272      1
## surface_area_m2            -0.93217  0.36201 0.0832      1
## distance_to_ocean_min_m    -0.94998  0.31230 0.5323      1
## distance_to_ocean_mean_m   -0.85542  0.51793 0.4286      1
## distance_to_ocean_median_m -0.81025  0.58609 0.4367      1
## tidal_lag_time_minutes     -0.74306  0.66923 0.4175      1
## tidal_efficiency            0.58875 -0.80832 0.5328      1
## perimeter_fromSat          -0.25657  0.96653 0.0917      1
## max_depth                  -0.35004 -0.93674 0.1947      1
## logArea                    -0.88134  0.47249 0.0201      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
jpresbom_ef <- envfit(jpresbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(25)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
jpresbom_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## [1,] -0.84334  0.53738 0.4301 0.03297 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresbom_efp <- p.adjust.envfit(jpresbom_ef)
## Adjustment of significance by bonferroni method
jpresbom_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## [1,] -0.84334  0.53738 0.4301 0.03297 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
jpresbso_ef <- envfit(jpresbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jpresbso_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.94207  0.33541 0.2252 0.7423
## volume_m3                   0.95259  0.30424 0.2135 0.7592
## surface_area_m2             0.78571 -0.61859 0.3178 0.6923
## distance_to_ocean_min_m    -0.88999 -0.45597 0.6701 0.2068
## distance_to_ocean_mean_m   -0.89206 -0.45192 0.6471 0.5405
## distance_to_ocean_median_m -0.87780 -0.47904 0.6385 0.5425
## tidal_lag_time_minutes     -0.98368 -0.17995 0.7191 0.9421
## tidal_efficiency            0.97293  0.23110 0.7970 0.5834
## perimeter_fromSat           0.99077 -0.13554 0.2877 0.7303
## max_depth                  -0.96970 -0.24432 0.0579 0.9630
## logArea                     0.54157 -0.84066 0.2156 0.5584
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresbso_efp <- p.adjust.envfit(jpresbso_ef)
## Adjustment of significance by bonferroni method
jpresbso_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.94207  0.33541 0.2252      1
## volume_m3                   0.95259  0.30424 0.2135      1
## surface_area_m2             0.78571 -0.61859 0.3178      1
## distance_to_ocean_min_m    -0.88999 -0.45597 0.6701      1
## distance_to_ocean_mean_m   -0.89206 -0.45192 0.6471      1
## distance_to_ocean_median_m -0.87780 -0.47904 0.6385      1
## tidal_lag_time_minutes     -0.98368 -0.17995 0.7191      1
## tidal_efficiency            0.97293  0.23110 0.7970      1
## perimeter_fromSat           0.99077 -0.13554 0.2877      1
## max_depth                  -0.96970 -0.24432 0.0579      1
## logArea                     0.54157 -0.84066 0.2156      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## Dice-Sørensen
# All sites 
spresb_ef <- envfit(spresb_NMDS, env[-c(8,20),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
spresb_ef
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline    0.67431 -0.73845 0.1637 0.4356
## surface_area_m2           0.42687 -0.90432 0.2824 0.1928
## distance_to_ocean_mean_m -0.95486 -0.29707 0.5732 0.5325
## tidal_efficiency          0.99977  0.02152 0.6115 0.4296
## max_depth                -0.23404 -0.97223 0.1373 0.8202
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spresb_efp <- p.adjust.envfit(spresb_ef)
## Adjustment of significance by bonferroni method
spresb_efp
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline    0.67431 -0.73845 0.1637  1.000
## surface_area_m2           0.42687 -0.90432 0.2824  0.964
## distance_to_ocean_mean_m -0.95486 -0.29707 0.5732  1.000
## tidal_efficiency          0.99977  0.02152 0.6115  1.000
## max_depth                -0.23404 -0.97223 0.1373  1.000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
spresbms_ef <- envfit(spresbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
spresbms_ef
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline   -0.35213  0.93595 0.0099 0.9720
## surface_area_m2          -0.93250  0.36117 0.0832 0.9401
## distance_to_ocean_mean_m -0.85545  0.51789 0.4285 0.4725
## tidal_efficiency          0.58881 -0.80827 0.5327 0.1838
## max_depth                -0.35006 -0.93673 0.1948 0.7293
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spresbms_efp <- p.adjust.envfit(spresbms_ef)
## Adjustment of significance by bonferroni method
spresbms_efp
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline   -0.35213  0.93595 0.0099 1.0000
## surface_area_m2          -0.93250  0.36117 0.0832 1.0000
## distance_to_ocean_mean_m -0.85545  0.51789 0.4285 1.0000
## tidal_efficiency          0.58881 -0.80827 0.5327 0.9191
## max_depth                -0.35006 -0.93673 0.1948 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
spresbom_ef <- envfit(spresbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
spresbom_ef
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2  Pr(>r)  
## volume_m3_w_chemocline    0.94021  0.34059 0.1657 0.55744  
## surface_area_m2           0.73084 -0.68255 0.2650 0.53846  
## distance_to_ocean_mean_m -0.72897  0.68455 0.2299 0.36264  
## tidal_efficiency          0.76011 -0.64979 0.2206 0.26573  
## max_depth                 0.66523  0.74664 0.5244 0.04595 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spresbom_efp <- p.adjust.envfit(spresbom_ef)
## Adjustment of significance by bonferroni method
spresbom_efp
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline    0.94021  0.34059 0.1657 1.0000
## surface_area_m2           0.73084 -0.68255 0.2650 1.0000
## distance_to_ocean_mean_m -0.72897  0.68455 0.2299 1.0000
## tidal_efficiency          0.76011 -0.64979 0.2206 1.0000
## max_depth                 0.66523  0.74664 0.5244 0.2298
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
spresbso_ef <- envfit(spresbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
spresbso_ef
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline    0.94236  0.33460 0.2252 0.7333
## surface_area_m2           0.78553 -0.61882 0.3179 0.6573
## distance_to_ocean_mean_m -0.89200 -0.45203 0.6470 0.5025
## tidal_efficiency          0.97296  0.23098 0.7970 0.5794
## max_depth                -0.96932 -0.24581 0.0579 0.9650
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
spresbso_efp <- p.adjust.envfit(spresbso_ef)
## Adjustment of significance by bonferroni method
spresbso_efp
## 
## ***VECTORS
## 
##                             NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline    0.94236  0.33460 0.2252      1
## surface_area_m2           0.78553 -0.61882 0.3179      1
## distance_to_ocean_mean_m -0.89200 -0.45203 0.6470      1
## tidal_efficiency          0.97296  0.23098 0.7970      1
## max_depth                -0.96932 -0.24581 0.0579      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
### Traits
# All sites for figure 
jprest_ef <- envfit(jpres_NMDS, FD_total_env[-20,c(57:58,64)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
jprest_ef
## 
## ***VECTORS
## 
##      NMDS1    NMDS2     r2   Pr(>r)   
## L  0.13030  0.99147 0.3305 0.004995 **
## T -0.97546 -0.22018 0.7008 0.008991 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##        NMDS1   NMDS2
## EC1b -1.0503 -0.5276
## EC2g -1.5644  0.0244
## EC3n  0.2905  0.0559
## 
## Goodness of fit:
##        r2  Pr(>r)  
## EC 0.4777 0.01099 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jprest_efp <- p.adjust.envfit(jprest_ef)
## Adjustment of significance by bonferroni method
jprest_efp
## 
## ***VECTORS
## 
##      NMDS1    NMDS2     r2  Pr(>r)  
## L  0.13030  0.99147 0.3305 0.01499 *
## T -0.97546 -0.22018 0.7008 0.02697 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##        NMDS1   NMDS2
## EC1b -1.0503 -0.5276
## EC2g -1.5644  0.0244
## EC3n  0.2905  0.0559
## 
## Goodness of fit:
##        r2  Pr(>r)  
## EC 0.4777 0.03297 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification 9:10,18:19
jpresta_ef <- envfit(jpres_NMDS, FD_total_env[-20,c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
jpresta_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL       0.13030  0.99147 0.3305 0.008991 **
## Troph            -0.97546 -0.22018 0.7008 0.010989 * 
## DepthMin         -0.47471  0.88014 0.0104 0.896104   
## DepthMax          0.48869  0.87246 0.3001 0.063936 . 
## TempPrefMin       0.53929 -0.84212 0.3079 0.155844   
## TempPrefMax      -0.06393 -0.99795 0.0801 0.164835   
## Weight            0.01274  0.99992 0.1121 0.136863   
## CaudalFinLength  -0.13218  0.99123 0.1757 0.015984 * 
## DorsalSpinesMean  0.99278 -0.11999 0.6012 0.023976 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.2929 -0.2733
## BodyShapeI3f         0.2803  0.1104
## BodyShapeI4e        -1.2708 -0.2089
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.1634 -0.3024
## OperculumPresentyes  0.2585  0.0672
## FeedingPathb         0.1050  0.0528
## FeedingPathp        -1.0503 -0.5276
## RepGuild11b         -1.0503 -0.5276
## RepGuild12g         -1.5644  0.0244
## RepGuild13n          0.2905  0.0559
## RepGuild22eb        -1.1059 -0.4106
## RepGuild23n         -1.5644  0.0244
## RepGuild26s          0.2229  0.0190
## ParentalCare3p      -1.1202 -0.1985
## ParentalCare4n       0.4201  0.0744
## WaterPref1s          0.3596  0.0225
## WaterPref3a         -1.2225 -0.0764
## 
## Goodness of fit:
##                      r2   Pr(>r)   
## BodyShapeI       0.4385 0.045954 * 
## DemersPelag      0.0000 1.000000   
## OperculumPresent 0.3654 0.098901 . 
## FeedingPath      0.1572 0.364635   
## RepGuild1        0.4777 0.007992 **
## RepGuild2        0.3744 0.011988 * 
## ParentalCare     0.5523 0.080919 . 
## WaterPref        0.5022 0.056943 . 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jpresta_efp <- p.adjust.envfit(jpresta_ef)
## Adjustment of significance by bonferroni method
jpresta_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.13030  0.99147 0.3305 0.1528
## Troph            -0.97546 -0.22018 0.7008 0.1868
## DepthMin         -0.47471  0.88014 0.0104 1.0000
## DepthMax          0.48869  0.87246 0.3001 1.0000
## TempPrefMin       0.53929 -0.84212 0.3079 1.0000
## TempPrefMax      -0.06393 -0.99795 0.0801 1.0000
## Weight            0.01274  0.99992 0.1121 1.0000
## CaudalFinLength  -0.13218  0.99123 0.1757 0.2717
## DorsalSpinesMean  0.99278 -0.11999 0.6012 0.4076
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.2929 -0.2733
## BodyShapeI3f         0.2803  0.1104
## BodyShapeI4e        -1.2708 -0.2089
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.1634 -0.3024
## OperculumPresentyes  0.2585  0.0672
## FeedingPathb         0.1050  0.0528
## FeedingPathp        -1.0503 -0.5276
## RepGuild11b         -1.0503 -0.5276
## RepGuild12g         -1.5644  0.0244
## RepGuild13n          0.2905  0.0559
## RepGuild22eb        -1.1059 -0.4106
## RepGuild23n         -1.5644  0.0244
## RepGuild26s          0.2229  0.0190
## ParentalCare3p      -1.1202 -0.1985
## ParentalCare4n       0.4201  0.0744
## WaterPref1s          0.3596  0.0225
## WaterPref3a         -1.2225 -0.0764
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.4385 0.7812
## DemersPelag      0.0000 1.0000
## OperculumPresent 0.3654 1.0000
## FeedingPath      0.1572 1.0000
## RepGuild1        0.4777 0.1359
## RepGuild2        0.3744 0.2038
## ParentalCare     0.5523 1.0000
## WaterPref        0.5022 0.9680
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes 12:14,18
jprestms_ef <- envfit(jpresms_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(12:14,18)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_ef
## 
## ***VECTORS
## 
##                NMDS1    NMDS2     r2   Pr(>r)    
## DepthMax     0.37917  0.92533 0.5650 0.009990 ** 
## TempPrefMin  0.13433 -0.99094 0.7048 0.000999 ***
## TempPrefMax -0.04422 -0.99902 0.4378 0.004995 ** 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##               NMDS1   NMDS2
## RepGuild11b -0.8545 -0.3481
## RepGuild12g -1.1597  0.1376
## RepGuild13n  0.3357  0.0351
## 
## Goodness of fit:
##               r2   Pr(>r)   
## RepGuild1 0.5641 0.002997 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jprestms_efp <- p.adjust.envfit(jprestms_ef)
## Adjustment of significance by bonferroni method
jprestms_efp
## 
## ***VECTORS
## 
##                NMDS1    NMDS2     r2   Pr(>r)   
## DepthMax     0.37917  0.92533 0.5650 0.039960 * 
## TempPrefMin  0.13433 -0.99094 0.7048 0.003996 **
## TempPrefMax -0.04422 -0.99902 0.4378 0.019980 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##               NMDS1   NMDS2
## RepGuild11b -0.8545 -0.3481
## RepGuild12g -1.1597  0.1376
## RepGuild13n  0.3357  0.0351
## 
## Goodness of fit:
##               r2  Pr(>r)  
## RepGuild1 0.5641 0.01199 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes 9:10
jprestom_ef <- envfit(jpresom_NMDS, FD_total_env[c(3,6:11,13:16,18:19,23),c(9:10)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
jprestom_ef
## 
## ***VECTORS
## 
##                NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL -0.99998 -0.00677 0.4907 0.014985 * 
## Troph       -0.66850 -0.74371 0.6816 0.001998 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jprestom_efp <- p.adjust.envfit(jprestom_ef)
## Adjustment of significance by bonferroni method
jprestom_efp
## 
## ***VECTORS
## 
##                NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL -0.99998 -0.00677 0.4907 0.029970 * 
## Troph       -0.66850 -0.74371 0.6816 0.003996 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites 9:10,18:19
jprestso_ef <- envfit(jpresso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(9:10,18:19)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_ef
## 
## ***VECTORS
## 
##                NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL  0.10155  0.99483 0.3868 0.001998 **
## Troph       -0.79699 -0.60400 0.8666 0.009990 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                NMDS1   NMDS2
## RepGuild11b  -0.6890 -0.3566
## RepGuild12g  -1.0431  0.0618
## RepGuild13n   0.3464  0.0589
## RepGuild22eb -0.7281 -0.2733
## RepGuild23n  -1.0431  0.0618
## RepGuild26s   0.2559  0.0136
## 
## Goodness of fit:
##               r2   Pr(>r)   
## RepGuild1 0.4562 0.006993 **
## RepGuild2 0.3465 0.004995 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
jprestso_efp <- p.adjust.envfit(jprestso_ef)
## Adjustment of significance by bonferroni method
jprestso_efp
## 
## ***VECTORS
## 
##                NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL  0.10155  0.99483 0.3868 0.007992 **
## Troph       -0.79699 -0.60400 0.8666 0.039960 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                NMDS1   NMDS2
## RepGuild11b  -0.6890 -0.3566
## RepGuild12g  -1.0431  0.0618
## RepGuild13n   0.3464  0.0589
## RepGuild22eb -0.7281 -0.2733
## RepGuild23n  -1.0431  0.0618
## RepGuild26s   0.2559  0.0136
## 
## Goodness of fit:
##               r2  Pr(>r)  
## RepGuild1 0.4562 0.02797 *
## RepGuild2 0.3465 0.01998 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
### Traits
# All sites 
sprest_ef <- envfit(spres_NMDS, FD_total_env[-20,c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
sprest_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2   Pr(>r)    
## MaxLengthTL       0.13029  0.99148 0.3305 0.000999 ***
## Troph            -0.97544 -0.22027 0.7008 0.009990 ** 
## DepthMin         -0.47449  0.88026 0.0104 0.908092    
## DepthMax          0.48869  0.87246 0.3001 0.065934 .  
## TempPrefMin       0.53929 -0.84212 0.3079 0.149850    
## TempPrefMax      -0.06391 -0.99796 0.0801 0.177822    
## Weight            0.01274  0.99992 0.1121 0.118881    
## CaudalFinLength  -0.13218  0.99123 0.1756 0.013986 *  
## DorsalSpinesMean  0.99277 -0.12003 0.6012 0.018981 *  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.3234 -0.3018
## BodyShapeI3f         0.3095  0.1219
## BodyShapeI4e        -1.4031 -0.2307
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.2845 -0.3339
## OperculumPresentyes  0.2854  0.0742
## FeedingPathb         0.1160  0.0583
## FeedingPathp        -1.1597 -0.5825
## RepGuild11b         -1.1597 -0.5825
## RepGuild12g         -1.7273  0.0270
## RepGuild13n          0.3208  0.0617
## RepGuild22eb        -1.2211 -0.4533
## RepGuild23n         -1.7273  0.0270
## RepGuild26s          0.2461  0.0210
## ParentalCare3p      -1.2368 -0.2192
## ParentalCare4n       0.4638  0.0822
## WaterPref1s          0.3970  0.0248
## WaterPref3a         -1.3498 -0.0843
## 
## Goodness of fit:
##                      r2   Pr(>r)   
## BodyShapeI       0.4385 0.034965 * 
## DemersPelag      0.0000 1.000000   
## OperculumPresent 0.3654 0.098901 . 
## FeedingPath      0.1572 0.369630   
## RepGuild1        0.4777 0.003996 **
## RepGuild2        0.3744 0.006993 **
## ParentalCare     0.5523 0.070929 . 
## WaterPref        0.5021 0.047952 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
sprest_efp <- p.adjust.envfit(sprest_ef)
## Adjustment of significance by bonferroni method
sprest_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2  Pr(>r)  
## MaxLengthTL       0.13029  0.99148 0.3305 0.01698 *
## Troph            -0.97544 -0.22027 0.7008 0.16983  
## DepthMin         -0.47449  0.88026 0.0104 1.00000  
## DepthMax          0.48869  0.87246 0.3001 1.00000  
## TempPrefMin       0.53929 -0.84212 0.3079 1.00000  
## TempPrefMax      -0.06391 -0.99796 0.0801 1.00000  
## Weight            0.01274  0.99992 0.1121 1.00000  
## CaudalFinLength  -0.13218  0.99123 0.1756 0.23776  
## DorsalSpinesMean  0.99277 -0.12003 0.6012 0.32268  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.3234 -0.3018
## BodyShapeI3f         0.3095  0.1219
## BodyShapeI4e        -1.4031 -0.2307
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.2845 -0.3339
## OperculumPresentyes  0.2854  0.0742
## FeedingPathb         0.1160  0.0583
## FeedingPathp        -1.1597 -0.5825
## RepGuild11b         -1.1597 -0.5825
## RepGuild12g         -1.7273  0.0270
## RepGuild13n          0.3208  0.0617
## RepGuild22eb        -1.2211 -0.4533
## RepGuild23n         -1.7273  0.0270
## RepGuild26s          0.2461  0.0210
## ParentalCare3p      -1.2368 -0.2192
## ParentalCare4n       0.4638  0.0822
## WaterPref1s          0.3970  0.0248
## WaterPref3a         -1.3498 -0.0843
## 
## Goodness of fit:
##                      r2  Pr(>r)  
## BodyShapeI       0.4385 0.59441  
## DemersPelag      0.0000 1.00000  
## OperculumPresent 0.3654 1.00000  
## FeedingPath      0.1572 1.00000  
## RepGuild1        0.4777 0.06793 .
## RepGuild2        0.3744 0.11888  
## ParentalCare     0.5523 1.00000  
## WaterPref        0.5021 0.81518  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
sprestms_ef <- envfit(spresms_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
sprestms_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2   Pr(>r)    
## MaxLengthTL       0.23348  0.97236 0.4657 0.023976 *  
## Troph            -0.99931  0.03701 0.5740 0.079920 .  
## DepthMin         -0.11931  0.99286 0.1167 0.302697    
## DepthMax          0.38593  0.92253 0.5532 0.016983 *  
## TempPrefMin       0.13455 -0.99091 0.7083 0.000999 ***
## TempPrefMax      -0.04406 -0.99903 0.4488 0.008991 ** 
## Weight            0.13928  0.99025 0.3111 0.061938 .  
## CaudalFinLength   0.03257  0.99947 0.2952 0.051948 .  
## DorsalSpinesMean  0.96547 -0.26052 0.6133 0.028971 *  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -1.0217 -0.3206
## BodyShapeI3f         0.5233  0.0133
## BodyShapeI4e        -1.1836  0.0436
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.0995 -0.1165
## OperculumPresentyes  0.3665  0.0388
## FeedingPathb         0.1480  0.0602
## FeedingPathp        -1.0360 -0.4216
## RepGuild11b         -1.0360 -0.4216
## RepGuild12g         -1.4204  0.1607
## RepGuild13n          0.4094  0.0435
## RepGuild22eb        -1.0217 -0.3206
## RepGuild23n         -1.4204  0.1607
## RepGuild26s          0.2971 -0.0001
## ParentalCare3p      -1.0016  0.0352
## ParentalCare4n       0.6010 -0.0211
## WaterPref1s          0.4802 -0.0074
## WaterPref3a         -1.0564  0.0163
## 
## Goodness of fit:
##                      r2   Pr(>r)   
## BodyShapeI       0.6408 0.018981 * 
## DemersPelag      0.0000 1.000000   
## OperculumPresent 0.4275 0.072927 . 
## FeedingPath      0.1875 0.278721   
## RepGuild1        0.5655 0.005994 **
## RepGuild2        0.4184 0.012987 * 
## ParentalCare     0.6323 0.075924 . 
## WaterPref        0.5323 0.078921 . 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
sprestms_efp <- p.adjust.envfit(sprestms_ef)
## Adjustment of significance by bonferroni method
sprestms_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2  Pr(>r)  
## MaxLengthTL       0.23348  0.97236 0.4657 0.40759  
## Troph            -0.99931  0.03701 0.5740 1.00000  
## DepthMin         -0.11931  0.99286 0.1167 1.00000  
## DepthMax          0.38593  0.92253 0.5532 0.28871  
## TempPrefMin       0.13455 -0.99091 0.7083 0.01698 *
## TempPrefMax      -0.04406 -0.99903 0.4488 0.15285  
## Weight            0.13928  0.99025 0.3111 1.00000  
## CaudalFinLength   0.03257  0.99947 0.2952 0.88312  
## DorsalSpinesMean  0.96547 -0.26052 0.6133 0.49251  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -1.0217 -0.3206
## BodyShapeI3f         0.5233  0.0133
## BodyShapeI4e        -1.1836  0.0436
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.0995 -0.1165
## OperculumPresentyes  0.3665  0.0388
## FeedingPathb         0.1480  0.0602
## FeedingPathp        -1.0360 -0.4216
## RepGuild11b         -1.0360 -0.4216
## RepGuild12g         -1.4204  0.1607
## RepGuild13n          0.4094  0.0435
## RepGuild22eb        -1.0217 -0.3206
## RepGuild23n         -1.4204  0.1607
## RepGuild26s          0.2971 -0.0001
## ParentalCare3p      -1.0016  0.0352
## ParentalCare4n       0.6010 -0.0211
## WaterPref1s          0.4802 -0.0074
## WaterPref3a         -1.0564  0.0163
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.6408 0.3227
## DemersPelag      0.0000 1.0000
## OperculumPresent 0.4275 1.0000
## FeedingPath      0.1875 1.0000
## RepGuild1        0.5655 0.1019
## RepGuild2        0.4184 0.2208
## ParentalCare     0.6323 1.0000
## WaterPref        0.5323 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
sprestom_ef <- envfit(spresom_NMDS, FD_total_env[c(3,6:11,13:16,18:19,23),c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
sprestom_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL      -0.99998 -0.00678 0.4907 0.009990 **
## Troph            -0.66850 -0.74371 0.6816 0.001998 **
## DepthMin          0.29445  0.95567 0.1726 0.216783   
## DepthMax         -0.10243 -0.99474 0.0077 0.973027   
## TempPrefMin       0.63819 -0.76988 0.2869 0.111888   
## TempPrefMax       0.34837 -0.93736 0.0734 0.529471   
## Weight           -0.99715  0.07542 0.0534 0.683317   
## CaudalFinLength  -0.99876  0.04976 0.3784 0.040959 * 
## DorsalSpinesMean  0.78598 -0.61825 0.3655 0.072927 . 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.5434  0.0555
## BodyShapeI3f        -0.0906 -0.0092
## DemersPelag1r        0.0000  0.0000
## OperculumPresentyes  0.0000  0.0000
## FeedingPathb         0.0000  0.0000
## RepGuild13n          0.0000  0.0000
## RepGuild26s          0.0000  0.0000
## ParentalCare4n       0.0000  0.0000
## WaterPref1s          0.0000  0.0000
## 
## Goodness of fit:
##                     r2 Pr(>r)
## BodyShapeI       0.117 0.6404
## DemersPelag      0.000 1.0000
## OperculumPresent 0.000 1.0000
## FeedingPath      0.000 1.0000
## RepGuild1        0.000 1.0000
## RepGuild2        0.000 1.0000
## ParentalCare     0.000 1.0000
## WaterPref        0.000 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
sprestom_efp <- p.adjust.envfit(sprestom_ef)
## Adjustment of significance by bonferroni method
sprestom_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2  Pr(>r)  
## MaxLengthTL      -0.99998 -0.00678 0.4907 0.16983  
## Troph            -0.66850 -0.74371 0.6816 0.03397 *
## DepthMin          0.29445  0.95567 0.1726 1.00000  
## DepthMax         -0.10243 -0.99474 0.0077 1.00000  
## TempPrefMin       0.63819 -0.76988 0.2869 1.00000  
## TempPrefMax       0.34837 -0.93736 0.0734 1.00000  
## Weight           -0.99715  0.07542 0.0534 1.00000  
## CaudalFinLength  -0.99876  0.04976 0.3784 0.69630  
## DorsalSpinesMean  0.78598 -0.61825 0.3655 1.00000  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.5434  0.0555
## BodyShapeI3f        -0.0906 -0.0092
## DemersPelag1r        0.0000  0.0000
## OperculumPresentyes  0.0000  0.0000
## FeedingPathb         0.0000  0.0000
## RepGuild13n          0.0000  0.0000
## RepGuild26s          0.0000  0.0000
## ParentalCare4n       0.0000  0.0000
## WaterPref1s          0.0000  0.0000
## 
## Goodness of fit:
##                     r2 Pr(>r)
## BodyShapeI       0.117      1
## DemersPelag      0.000      1
## OperculumPresent 0.000      1
## FeedingPath      0.000      1
## RepGuild1        0.000      1
## RepGuild2        0.000      1
## ParentalCare     0.000      1
## WaterPref        0.000      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
sprestso_ef <- envfit(spresso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
sprestso_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL       0.10154  0.99483 0.3868 0.002997 **
## Troph            -0.79699 -0.60399 0.8666 0.011988 * 
## DepthMin         -0.20036  0.97972 0.0314 0.689311   
## DepthMax          0.39583  0.91832 0.2841 0.040959 * 
## TempPrefMin       0.39055 -0.92058 0.3671 0.128871   
## TempPrefMax      -0.08495 -0.99639 0.1297 0.144855   
## Weight           -0.05008  0.99875 0.2028 0.116883   
## CaudalFinLength  -0.11161  0.99375 0.2116 0.058941 . 
## DorsalSpinesMean  0.99753  0.07024 0.6372 0.048951 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.5873 -0.2448
## BodyShapeI3f         0.4117  0.2046
## BodyShapeI4e        -1.1609 -0.1744
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.0574 -0.3140
## OperculumPresentyes  0.4229  0.1256
## FeedingPathb         0.1626  0.0841
## FeedingPathp        -0.9753 -0.5047
## RepGuild11b         -0.9753 -0.5047
## RepGuild12g         -1.4767  0.0875
## RepGuild13n          0.4904  0.0834
## RepGuild22eb        -1.0307 -0.3868
## RepGuild23n         -1.4767  0.0875
## RepGuild26s          0.3622  0.0193
## ParentalCare3p      -1.0120 -0.1455
## ParentalCare4n       0.7590  0.1091
## WaterPref1s          0.6224  0.0027
## WaterPref3a         -1.1204 -0.0049
## 
## Goodness of fit:
##                      r2   Pr(>r)   
## BodyShapeI       0.4042 0.060939 . 
## DemersPelag      0.0000 1.000000   
## OperculumPresent 0.3356 0.101898   
## FeedingPath      0.1386 0.350649   
## RepGuild1        0.4562 0.006993 **
## RepGuild2        0.3465 0.005994 **
## ParentalCare     0.5406 0.116883   
## WaterPref        0.4808 0.064935 . 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
sprestso_efp <- p.adjust.envfit(sprestso_ef)
## Adjustment of significance by bonferroni method
sprestso_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2  Pr(>r)  
## MaxLengthTL       0.10154  0.99483 0.3868 0.05095 .
## Troph            -0.79699 -0.60399 0.8666 0.20380  
## DepthMin         -0.20036  0.97972 0.0314 1.00000  
## DepthMax          0.39583  0.91832 0.2841 0.69630  
## TempPrefMin       0.39055 -0.92058 0.3671 1.00000  
## TempPrefMax      -0.08495 -0.99639 0.1297 1.00000  
## Weight           -0.05008  0.99875 0.2028 1.00000  
## CaudalFinLength  -0.11161  0.99375 0.2116 1.00000  
## DorsalSpinesMean  0.99753  0.07024 0.6372 0.83217  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.5873 -0.2448
## BodyShapeI3f         0.4117  0.2046
## BodyShapeI4e        -1.1609 -0.1744
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.0574 -0.3140
## OperculumPresentyes  0.4229  0.1256
## FeedingPathb         0.1626  0.0841
## FeedingPathp        -0.9753 -0.5047
## RepGuild11b         -0.9753 -0.5047
## RepGuild12g         -1.4767  0.0875
## RepGuild13n          0.4904  0.0834
## RepGuild22eb        -1.0307 -0.3868
## RepGuild23n         -1.4767  0.0875
## RepGuild26s          0.3622  0.0193
## ParentalCare3p      -1.0120 -0.1455
## ParentalCare4n       0.7590  0.1091
## WaterPref1s          0.6224  0.0027
## WaterPref3a         -1.1204 -0.0049
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.4042 1.0000
## DemersPelag      0.0000 1.0000
## OperculumPresent 0.3356 1.0000
## FeedingPath      0.1386 1.0000
## RepGuild1        0.4562 0.1189
## RepGuild2        0.3465 0.1019
## ParentalCare     0.5406 1.0000
## WaterPref        0.4808 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000

Incidence mantel tests

We used mantel tests to determine significance between the incidence and environmental distance matrices.

### Environmental
## Jaccard
# All sites
enve_dist_s <- dist(scaled_env[-c(9,16,18,20),c(2)], method = "euclidean")
jpresea_mant_s <- mantel(jprese_dist, enve_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jpresea_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jprese_dist, ydis = enve_dist_s, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.6697 
##       Significance: 0.006 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.570 0.605 0.628 0.652 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
enve_dist_p <- dist(scaled_env[-c(9,16,18,20),c(4)], method = "euclidean")
jpresea_mant_p <- mantel(jprese_dist, enve_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jpresea_mant_p
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jprese_dist, ydis = enve_dist_p, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.7163 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.533 0.572 0.606 0.651 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jpresea_mant_pv <- rbind(jpresea_mant_s$signif, jpresea_mant_p$signif)
jpresea_mant_pv <- jpresea_mant_pv[,1]
jpresea_mant_pv <- p.adjust(jpresea_mant_pv, method = "bonferroni")
jpresea_mant_pv
## [1] 0.012 0.004
# Mixed and stratified lakes
envems_dist_s <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2)], method = "euclidean")
jpresems_mant_s <- mantel(jpresems_dist, envems_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jpresems_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresems_dist, ydis = envems_dist_s, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6676 
##       Significance: 0.006 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.561 0.606 0.633 0.653 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envems_dist_p <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(4)], method = "euclidean")
jpresems_mant_p <- mantel(jpresems_dist, envems_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jpresems_mant_p
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresems_dist, ydis = envems_dist_p, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6357 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.429 0.473 0.496 0.534 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jpresems_mant_pv <- rbind(jpresems_mant_s$signif, jpresems_mant_p$signif)
jpresems_mant_pv <- jpresems_mant_pv[,1]
jpresems_mant_pv <- p.adjust(jpresems_mant_pv, method = "bonferroni")
jpresems_mant_pv
## [1] 0.012 0.004
# Ocean sites and mixed lakes
enveom_dist_p <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(4)], method = "euclidean")
jpreseom_mant_p <- mantel(jpreseom_dist, enveom_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
jpreseom_mant_p
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpreseom_dist, ydis = enveom_dist_p, method = "spearman",      permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15,          19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5793 
##       Significance: 0.012 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.317 0.386 0.456 0.591 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
enveso_dist_s <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2)], method = "euclidean")
jpreseso_mant_s <- mantel(jpreseso_dist, enveso_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
jpreseso_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpreseso_dist, ydis = enveso_dist_s, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17,          19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5528 
##       Significance: 0.02 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.458 0.511 0.546 0.569 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## Dice-Sørensen
# All sites
enve_dist <- dist(scaled_env[-c(9,16,18,20),c(6,8,10)], method = "euclidean")
sprese_mant <- mantel(sprese_dist, enve_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
sprese_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = sprese_dist, ydis = enve_dist, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.3836 
##       Significance: 0.16 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.414 0.449 0.480 0.499 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
envems_dist <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10)], method = "euclidean")
spresems_mant <- mantel(spresems_dist, envems_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
spresems_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresems_dist, ydis = envems_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3463 
##       Significance: 0.212 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.401 0.454 0.499 0.533 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
enveom_dist <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(6,8,10)], method = "euclidean")
spreseom_mant <- mantel(spreseom_dist, enveom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
spreseom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spreseom_dist, ydis = enveom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15,          19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2566 
##       Significance: 0.086 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.241 0.281 0.345 0.435 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
enveso_dist <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(6,8,10)], method = "euclidean")
spreseso_mant <- mantel(spreseso_dist, enveso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
spreseso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spreseso_dist, ydis = enveso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17,          19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4922 
##       Significance: 0.165 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.509 0.535 0.555 0.572 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes
enves_dist <- dist(scaled_env[c(1:2,4,5,12,17,21:22),c(2)], method = "euclidean")
jpreses_mant <- mantel(jpress_dist, enves_dist, method = "spearman", permutations = 999, na.rm = TRUE)
jpreses_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpress_dist, ydis = enves_dist, method = "spearman",      permutations = 999, na.rm = TRUE) 
## 
## Mantel statistic r: 0.4001 
##       Significance: 0.016 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.238 0.304 0.359 0.409 
## Permutation: free
## Number of permutations: 999
### Biogeographic
## Jaccard
# All sites
envb_dist <- dist(scaled_env[-c(8,20),c(5:15)], method = "euclidean")
jpresba_mant <- mantel(jpresb_dist, envb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
jpresba_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresb_dist, ydis = envb_dist, method = "spearman",      permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3881 
##       Significance: 0.241 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.426 0.447 0.465 0.489 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:15)], method = "euclidean")
jpresbms_mant <- mantel(jpresbms_dist, envbms_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
jpresbms_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresbms_dist, ydis = envbms_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 10, 12:15, 17, 21:23),          19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2892 
##       Significance: 0.338 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.404 0.467 0.510 0.550 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(5:15)], method = "euclidean")
jpresbom_mant <- mantel(jpresbom_dist, envbom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
jpresbom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresbom_dist, ydis = envbom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:7, 9:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2261 
##       Significance: 0.227 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.298 0.338 0.383 0.426 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:15)], method = "euclidean")
jpresbso_mant <- mantel(jpresbso_dist, envbso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jpresbso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresbso_dist, ydis = envbso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5571 
##       Significance: 0.383 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.597 0.611 0.624 0.638 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jpresb_mant_p <- rbind(jpresbms_mant$signif, jpresbom_mant$signif, jpresbso_mant$signif)
jpresb_mant_p <- jpresb_mant_p[,1]
jpresb_mant_p <- p.adjust(jpresb_mant_p, method = "bonferroni")
jpresb_mant_p
## [1] 1.000 0.681 1.000
## Dice-Sørensen
# All sites
spresb_mant <- mantel(spresb_dist, envb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
spresb_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresb_dist, ydis = envb_dist, method = "spearman",      permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3881 
##       Significance: 0.282 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.439 0.467 0.494 0.516 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
spresbms_mant <- mantel(spresbms_dist, envbms_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
spresbms_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresbms_dist, ydis = envbms_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 10, 12:15, 17, 21:23),          19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2892 
##       Significance: 0.349 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.401 0.451 0.481 0.515 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
spresbom_mant <- mantel(spresbom_dist, envbom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
spresbom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresbom_dist, ydis = envbom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:7, 9:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2261 
##       Significance: 0.226 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.294 0.339 0.374 0.413 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
spresbso_mant <- mantel(spresbso_dist, envbso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
spresbso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresbso_dist, ydis = envbso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5571 
##       Significance: 0.403 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.600 0.618 0.629 0.640 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
### Traits
# All sites 1,2,4,12:13
FDpa_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(1)]))
jpresta_mant_s <- mantel(jpres_dist, FDpa_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_s, method = "spearman",      permutations = 999, strata = env[-20, 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5553 
##       Significance: 0.001 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.368 0.409 0.440 0.472 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpa_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(2)]))
jpresta_mant_l <- mantel(jpres_dist, FDpa_dist_l, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_l
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_l, method = "spearman",      permutations = 999, strata = env[-20, 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3662 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.252 0.278 0.301 0.320 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpa_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(4)]))
jpresta_mant_dmin <- mantel(jpres_dist, FDpa_dist_dmin, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_dmin
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_dmin, method = "spearman",      permutations = 999, strata = env[-20, 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6215 
##       Significance: 0.006 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.549 0.566 0.580 0.602 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpa_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(12:13)]))
jpresta_mant_ec <- mantel(jpres_dist, FDpa_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_ec
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_ec, method = "spearman",      permutations = 999, strata = env[-20, 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5011 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.387 0.412 0.437 0.471 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jpresta_mant_pv <- rbind(jpresta_mant_s$signif, jpresta_mant_l$signif, jpresta_mant_dmin$signif, jpresta_mant_ec$signif)
jpresta_mant_pv <- jpresta_mant_pv[,1]
jpresta_mant_pv <- p.adjust(jpresta_mant_pv, method = "bonferroni")
jpresta_mant_pv
## [1] 0.004 0.008 0.024 0.008
# Mixed and stratified lakes 1,4,12:13
FDpams_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1)]))
jprestms_mant_s <- mantel(jpresms_dist, FDpams_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresms_dist, ydis = FDpams_dist_s, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4835 
##       Significance: 0.005 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.321 0.371 0.413 0.451 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpams_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(4)]))
jprestms_mant_dmin <- mantel(jpresms_dist, FDpams_dist_dmin, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_mant_dmin
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresms_dist, ydis = FDpams_dist_dmin, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5526 
##       Significance: 0.009 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.472 0.501 0.526 0.547 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpams_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(12:13)]))
jprestms_mant_ec <- mantel(jpresms_dist, FDpams_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_mant_ec
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresms_dist, ydis = FDpams_dist_ec, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5043 
##       Significance: 0.005 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.359 0.395 0.438 0.451 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jprestms_mant_pv <- rbind(jprestms_mant_s$signif, jprestms_mant_dmin$signif, jprestms_mant_ec$signif)
jprestms_mant_pv <- jprestms_mant_pv[,1]
jprestms_mant_pv <- p.adjust(jprestms_mant_pv, method = "bonferroni")
jprestms_mant_pv
## [1] 0.015 0.027 0.015
# Ocean sites and mixed lakes 1,2
FDpaom_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(1)]))
jprestom_mant_s <- mantel(jpresom_dist, FDpaom_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
jprestom_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresom_dist, ydis = FDpaom_dist_s, method = "spearman",      permutations = 999, strata = env[c(3, 6:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4451 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.161 0.225 0.269 0.322 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpaom_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(2)]))
jprestom_mant_l <- mantel(jpresom_dist, FDpaom_dist_l, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
jprestom_mant_l
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresom_dist, ydis = FDpaom_dist_l, method = "spearman",      permutations = 999, strata = env[c(3, 6:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2519 
##       Significance: 0.02 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.137 0.188 0.232 0.291 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jprestom_mant_pv <- rbind(jprestom_mant_s$signif, jprestom_mant_l$signif)
jprestom_mant_pv <- jprestom_mant_pv[,1]
jprestom_mant_pv <- p.adjust(jprestom_mant_pv, method = "bonferroni")
jprestom_mant_pv
## [1] 0.004 0.040
# Stratified lakes and ocean sites 2,4,12:13
FDpaso_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(2)]))
jprestso_mant_l <- mantel(jpresso_dist, FDpaso_dist_l, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_mant_l
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresso_dist, ydis = FDpaso_dist_l, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2324 
##       Significance: 0.003 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.148 0.172 0.187 0.206 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpaso_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(4)]))
jprestso_mant_dmin <- mantel(jpresso_dist, FDpaso_dist_dmin, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_mant_dmin
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresso_dist, ydis = FDpaso_dist_dmin, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5981 
##       Significance: 0.001 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.517 0.536 0.549 0.567 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpaso_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(12:13)]))
jprestso_mant_ec <- mantel(jpresso_dist, FDpaso_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_mant_ec
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = jpresso_dist, ydis = FDpaso_dist_ec, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2447 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.149 0.174 0.191 0.214 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
jprestso_mant_pv <- rbind(jprestso_mant_l$signif, jprestso_mant_dmin$signif, jprestso_mant_ec$signif)
jprestso_mant_pv <- jprestso_mant_pv[,1]
jprestso_mant_pv <- p.adjust(jprestso_mant_pv, method = "bonferroni")
jprestso_mant_pv
## [1] 0.009 0.003 0.006
## Dice-Sørensen
# All sites
FDpa_dist <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(1:17)]))
spresta_mant <- mantel(spres_dist, FDpa_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
spresta_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spres_dist, ydis = FDpa_dist, method = "spearman",      permutations = 999, strata = env[-20, 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6331 
##       Significance: 0.001 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.513 0.536 0.560 0.578 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
FDpams_dist <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1:17)]))
sprestms_mant <- mantel(spresms_dist, FDpams_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
sprestms_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresms_dist, ydis = FDpams_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6558 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.461 0.498 0.543 0.578 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
FDpaom_dist <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(1:7)]))
sprestom_mant <- mantel(spresom_dist, FDpaom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
sprestom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresom_dist, ydis = FDpaom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3433 
##       Significance: 0.016 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.173 0.236 0.297 0.352 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
FDpaso_dist <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(1:17)]))
sprestso_mant <- mantel(spresso_dist, FDpaso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
sprestso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = spresso_dist, ydis = FDpaso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3897 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.269 0.310 0.342 0.365 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999

Plot Jaccard incidence NMDS and envfit results

Includes a plot of correlated environmental variables and a plot of correlated traits

jpres_NMDS_data.scores <- as.data.frame(scores(jpres_NMDS))
jpres_NMDS_data.scores$Stratification <- env[-20,19]
jpres_NMDS_data.scores$Lakes <- env[-20,1]
jpres_NMDS_data.scores$Stratification <- factor(jpres_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))

jprese_ef_coord_cont <- as.data.frame(scores(jprese_ef, "vectors")) * ordiArrowMul(jprese_ef)
jprese_new_row_names <- c("pH")
# Assign the new row names to the data frame
jprese_ef_coord_cont <- data.frame(row.names = jprese_new_row_names, jprese_ef_coord_cont)

# jpresb_ef_coord_cont <- as.data.frame(scores(jpresb_ef, "vectors")) * ordiArrowMul(jpresb_ef)
# jpresb_new_row_names <- c("LA")
# # Assign the new row names to the data frame
# jpresb_ef_coord_cont <- data.frame(row.names = jpresb_new_row_names, jpresb_ef_coord_cont)

jpres_ef_plot <- ggplot(data = jpres_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification), level = 0.50) +
  geom_point(data = jpres_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) + 
  geom_text_repel(data = jpres_NMDS_data.scores, label = jpres_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
               data = jprese_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD661D") +
  geom_text(data = jprese_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
            color = "#CD661D", label = row.names(jprese_ef_coord_cont), size = 7) +
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
  #              data = jpresb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#698B22") +
  # geom_text(data = jpresb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
  #           color = "#698B22", label = row.names(jpresb_ef_coord_cont), size = 6) +
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = 1, y = 0.73, size = 6, 
  #          label = paste("Stress: ", round(jpres_NMDS$stress, digits = 2))) +
  labs(color = "Stratification")
jpres_ef_plot <- jpres_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
jpres_ef_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/jpres_ef_plot.png", jpres_ef_plot, width = 8, height = 4, units = "in")


jprest_ef_coord_cont <- as.data.frame(scores(jprest_ef, "vectors")) * ordiArrowMul(jprest_ef)
jprest_ef_coord_cat = as.data.frame(scores(jprest_ef, "factors")) * ordiArrowMul(jprest_ef)

jprest_ef_plot <- ggplot(data = jpres_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
  geom_point(data = jpres_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) + 
  geom_text_repel(data = jpres_NMDS_data.scores, label = jpres_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = jprest_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD3333") +
  geom_text(data = jprest_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "#CD3333", label = row.names(jprest_ef_coord_cont), size = 7) + 
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = jprest_ef_coord_cat, linewidth =1, alpha = 0.2, color = "#8B6508") +
  geom_text(data = jprest_ef_coord_cat, aes(x = NMDS1, y = NMDS2), 
            color = "#8B6508", label = row.names(jprest_ef_coord_cat), size = 7, check_overlap = T) + 
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = 1.05, y = 0.73, size = 6, 
  #          label = paste("Stress: ", round(jpres_NMDS$stress, digits = 2))) +
  labs(color = "Stratification", tag = "B")
jprest_ef_plot <- jprest_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
jprest_ef_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/jprest_ef_plot.png", jprest_ef_plot, width = 8.25, height = 4.13, units = "in")

Plot Dice-Sørensen incidence NMDS and envfit results

spres_NMDS_data.scores <- as.data.frame(scores(spres_NMDS))
spres_NMDS_data.scores$Stratification <- env[-c(20),19]
spres_NMDS_data.scores$Stratification <- factor(spres_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))

sprese_ef_coord_cont <- as.data.frame(scores(sprese_ef, "vectors")) * ordiArrowMul(sprese_ef)
spresb_ef_coord_cont <- as.data.frame(scores(spresb_ef, "vectors")) * ordiArrowMul(spresb_ef)
sprest_ef_coord_cont <- as.data.frame(scores(sprest_ef, "vectors")) * ordiArrowMul(sprest_ef)
sprest_ef_coord_cat = as.data.frame(scores(sprest_ef, "factors")) * ordiArrowMul(sprest_ef)

spres_ef_plot <- ggplot(data = spres_NMDS_data.scores, aes(x = NMDS1, y = NMDS2)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
  geom_point(data = spres_NMDS_data.scores, aes(color = Stratification), size = 7, alpha = 1) + 
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = sprese_ef_coord_cont, size =1, alpha = 0.5, color = "#8968CD") + 
  geom_text(data = sprese_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "#8968CD", label = row.names(sprese_ef_coord_cont)) + 
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = spresb_ef_coord_cont, size =1, alpha = 0.5, color = "#CD5555") + 
  geom_text(data = spresb_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "#CD5555", label = row.names(spresb_ef_coord_cont)) + 
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = sprest_ef_coord_cont, size =1, alpha = 0.5, color = "darkolivegreen3") +
  geom_text(data = sprest_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "darkolivegreen3", label = row.names(sprest_ef_coord_cont)) + 
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = sprest_ef_coord_cat, size =1, alpha = 0.5, color = "#EEC900") +
  geom_text(data = sprest_ef_coord_cat, aes(x = NMDS1, y = NMDS2), 
            color = "#EEC900", label = row.names(sprest_ef_coord_cat)) + 
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  annotate(geom = "label", x = -1.5, y = 0.82639346, size = 4, 
           label = paste("Stress: ", round(spres_NMDS$stress, digits = 2))) +
  labs(color = "Stratification")
spres_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/spres_ef_plot.png", spres_ef_plot, width = 8, height = 4, units = "in")

Trait dissimilarity distances

We use the community weighted means calculated from the FD package. We use traits that were found to be significantly correlated with stratification and environmental variables.

### Regular 6,8,10,18,20,21,22
# All sites 6,8,10,18,20,21,22
# Non-siginficant dipersion but significant difference between stratification types: 10,20,22
# BodyShapeI, OperculumPresent, Troph, RepGuild1, ParentalCare, WaterPref, DorsalSpinesMean
fd_dist <- gowdis(FD_total_env[-20,c(6,8,10,18,20,21,22)])
# Mixed and stratified lakes
fdms_dist <- gowdis(FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10,18,20,21,22)])
# Ocean sites and mixed lakes
fdom_dist <- gowdis(FD_total_env[c(3,6:11,13:16,18:19,23),c(6,8,10,18,20,21,22)])
# Stratified lakes and ocean sites
fdso_dist <- gowdis(FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(6,8,10,18,20,21,22)])
# Stratified lakes
fds_dist <- gowdis(FD_total_env[c(1:2,4,5,12,17,21:22),c(6,8,10,18,20,21,22)])


### Environmental -c(9,16,18,20)
# All sites
fde_dist <- gowdis(FD_total_env[-c(9,16,18,20),c(6,8,10,18,20,21,22)])
# Mixed and stratified lakes
fdems_dist <- gowdis(FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10,18,20,21,22)])
# Ocean sites and mixed lakes
fdeom_dist <- gowdis(FD_total_env[c(3,6:8,10:11,13:15,19,23),c(6,8,10,18,20,21,22)])
# Stratified lakes and ocean sites
fdeso_dist <- gowdis(FD_total_env[c(1:2,4,5,7,11:12,17,19,21:22),c(6,8,10,18,20,21,22)])


### Biogeographic -c(8,20)
# All sites
fdb_dist <- gowdis(FD_total_env[-c(8,20),-c(6,8,10,18,20,21,22)])
# Mixed and stratified lakes
fdbms_dist <- gowdis(FD_total_env[c(1:6,10,12:15,17,21:23),c(6,8,10,18,20,21,22)])
# Ocean sites and mixed lakes
fdbom_dist <- gowdis(FD_total_env[c(3,6:7,9:11,13:16,18:19,23),c(6,8,10,18,20,21,22)])
# Stratified lakes and ocean sites
fdbso_dist <- gowdis(FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(6,8,10,18,20,21,22)])

Trait NMDS

To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.

### Regular
# All sites 
fd_NMDS <- metaMDS(fd_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.03172161 
## Run 1 stress 0.03676001 
## Run 2 stress 0.03644827 
## Run 3 stress 0.03752263 
## Run 4 stress 0.03644765 
## Run 5 stress 0.03866126 
## Run 6 stress 0.03172162 
## ... Procrustes: rmse 2.907315e-05  max resid 9.31783e-05 
## ... Similar to previous best
## Run 7 stress 0.03676002 
## Run 8 stress 0.03644823 
## Run 9 stress 0.03751878 
## Run 10 stress 0.03393548 
## Run 11 stress 0.03675763 
## Run 12 stress 0.03393548 
## Run 13 stress 0.03393548 
## Run 14 stress 0.03676003 
## Run 15 stress 0.03393551 
## Run 16 stress 0.2155578 
## Run 17 stress 0.03577049 
## Run 18 stress 0.03172159 
## ... New best solution
## ... Procrustes: rmse 6.090777e-05  max resid 0.0002162438 
## ... Similar to previous best
## Run 19 stress 0.03172158 
## ... New best solution
## ... Procrustes: rmse 3.422988e-05  max resid 0.0001070888 
## ... Similar to previous best
## Run 20 stress 0.03172162 
## ... Procrustes: rmse 4.651624e-05  max resid 0.0001415165 
## ... Similar to previous best
## Run 21 stress 0.03752409 
## Run 22 stress 0.03866129 
## Run 23 stress 0.03751884 
## Run 24 stress 0.03675802 
## Run 25 stress 0.03577054 
## Run 26 stress 0.03172159 
## ... Procrustes: rmse 1.254479e-05  max resid 3.869204e-05 
## ... Similar to previous best
## Run 27 stress 0.03577048 
## Run 28 stress 0.03866128 
## Run 29 stress 0.03393548 
## Run 30 stress 0.03403879 
## Run 31 stress 0.03577092 
## Run 32 stress 0.03577096 
## Run 33 stress 0.03577098 
## Run 34 stress 0.03393553 
## Run 35 stress 0.03752416 
## Run 36 stress 0.03403879 
## Run 37 stress 0.03393549 
## Run 38 stress 0.03866135 
## Run 39 stress 0.03172159 
## ... Procrustes: rmse 1.884991e-05  max resid 6.392282e-05 
## ... Similar to previous best
## Run 40 stress 0.04599199 
## Run 41 stress 0.03172158 
## ... Procrustes: rmse 3.074257e-05  max resid 8.362105e-05 
## ... Similar to previous best
## Run 42 stress 0.03172162 
## ... Procrustes: rmse 4.186809e-05  max resid 0.0001274977 
## ... Similar to previous best
## Run 43 stress 0.03675772 
## Run 44 stress 0.2156908 
## Run 45 stress 0.03172158 
## ... Procrustes: rmse 3.329818e-06  max resid 1.03662e-05 
## ... Similar to previous best
## Run 46 stress 0.03644817 
## Run 47 stress 0.03393548 
## Run 48 stress 0.03172159 
## ... Procrustes: rmse 6.043402e-06  max resid 1.57008e-05 
## ... Similar to previous best
## Run 49 stress 0.036758 
## Run 50 stress 0.03172162 
## ... Procrustes: rmse 4.249985e-05  max resid 0.0001294009 
## ... Similar to previous best
## Run 51 stress 0.03393548 
## Run 52 stress 0.03866132 
## Run 53 stress 0.03172161 
## ... Procrustes: rmse 1.96119e-05  max resid 6.130382e-05 
## ... Similar to previous best
## Run 54 stress 0.03393549 
## Run 55 stress 0.3807978 
## Run 56 stress 0.03172159 
## ... Procrustes: rmse 1.390791e-05  max resid 4.287653e-05 
## ... Similar to previous best
## Run 57 stress 0.03644816 
## Run 58 stress 0.03172162 
## ... Procrustes: rmse 4.248583e-05  max resid 0.0001279729 
## ... Similar to previous best
## Run 59 stress 0.03675998 
## Run 60 stress 0.03751766 
## Run 61 stress 0.03675996 
## Run 62 stress 0.2155239 
## Run 63 stress 0.03752418 
## Run 64 stress 0.03172159 
## ... Procrustes: rmse 1.243733e-05  max resid 3.730288e-05 
## ... Similar to previous best
## Run 65 stress 0.03172164 
## ... Procrustes: rmse 6.024307e-05  max resid 0.0001772209 
## ... Similar to previous best
## Run 66 stress 0.03172161 
## ... Procrustes: rmse 7.101092e-05  max resid 0.0002221434 
## ... Similar to previous best
## Run 67 stress 0.03866127 
## Run 68 stress 0.03577044 
## Run 69 stress 0.03866816 
## Run 70 stress 0.03866811 
## Run 71 stress 0.0317216 
## ... Procrustes: rmse 2.197235e-05  max resid 7.691983e-05 
## ... Similar to previous best
## Run 72 stress 0.03675813 
## Run 73 stress 0.03172159 
## ... Procrustes: rmse 7.236039e-06  max resid 2.221118e-05 
## ... Similar to previous best
## Run 74 stress 0.03751758 
## Run 75 stress 0.05308619 
## Run 76 stress 0.03675801 
## Run 77 stress 0.03644759 
## Run 78 stress 0.03752412 
## Run 79 stress 0.03751884 
## Run 80 stress 0.2156843 
## Run 81 stress 0.03675772 
## Run 82 stress 0.03866132 
## Run 83 stress 0.03172161 
## ... Procrustes: rmse 3.468174e-05  max resid 0.0001029894 
## ... Similar to previous best
## Run 84 stress 0.03393548 
## Run 85 stress 0.03172162 
## ... Procrustes: rmse 2.129239e-05  max resid 6.507502e-05 
## ... Similar to previous best
## Run 86 stress 0.03644759 
## Run 87 stress 0.03172159 
## ... Procrustes: rmse 2.322988e-05  max resid 5.713447e-05 
## ... Similar to previous best
## Run 88 stress 0.03393549 
## Run 89 stress 0.0317216 
## ... Procrustes: rmse 1.761044e-05  max resid 5.284032e-05 
## ... Similar to previous best
## Run 90 stress 0.0445539 
## Run 91 stress 0.03751757 
## Run 92 stress 0.03172161 
## ... Procrustes: rmse 2.93477e-05  max resid 9.10781e-05 
## ... Similar to previous best
## Run 93 stress 0.03866129 
## Run 94 stress 0.03393551 
## Run 95 stress 0.03644817 
## Run 96 stress 0.03751757 
## Run 97 stress 0.03172161 
## ... Procrustes: rmse 9.638319e-06  max resid 2.928546e-05 
## ... Similar to previous best
## Run 98 stress 0.036758 
## Run 99 stress 0.04457726 
## Run 100 stress 0.03172159 
## ... Procrustes: rmse 1.877859e-05  max resid 5.718608e-05 
## ... Similar to previous best
## Run 101 stress 0.03752411 
## Run 102 stress 0.03577051 
## Run 103 stress 0.03393549 
## Run 104 stress 0.03752419 
## Run 105 stress 0.03393549 
## Run 106 stress 0.03676001 
## Run 107 stress 0.0375176 
## Run 108 stress 0.03577097 
## Run 109 stress 0.03752411 
## Run 110 stress 0.03172162 
## ... Procrustes: rmse 3.812986e-05  max resid 0.0001163101 
## ... Similar to previous best
## Run 111 stress 0.03172161 
## ... Procrustes: rmse 3.631811e-05  max resid 0.0001212794 
## ... Similar to previous best
## Run 112 stress 0.03866125 
## Run 113 stress 0.03172162 
## ... Procrustes: rmse 4.098181e-05  max resid 0.0001251281 
## ... Similar to previous best
## Run 114 stress 0.03393548 
## Run 115 stress 0.03751757 
## Run 116 stress 0.03172164 
## ... Procrustes: rmse 5.523572e-05  max resid 0.0001678021 
## ... Similar to previous best
## Run 117 stress 0.03577094 
## Run 118 stress 0.03866129 
## Run 119 stress 0.04461507 
## Run 120 stress 0.0317216 
## ... Procrustes: rmse 2.353647e-05  max resid 7.218314e-05 
## ... Similar to previous best
## Run 121 stress 0.03866816 
## Run 122 stress 0.03172159 
## ... Procrustes: rmse 1.129018e-05  max resid 3.525418e-05 
## ... Similar to previous best
## Run 123 stress 0.03644761 
## Run 124 stress 0.03393551 
## Run 125 stress 0.03172164 
## ... Procrustes: rmse 6.028574e-05  max resid 0.0001771439 
## ... Similar to previous best
## Run 126 stress 0.04065276 
## Run 127 stress 0.03675811 
## Run 128 stress 0.03873358 
## Run 129 stress 0.03172159 
## ... Procrustes: rmse 4.986826e-06  max resid 1.623875e-05 
## ... Similar to previous best
## Run 130 stress 0.03172159 
## ... Procrustes: rmse 4.094569e-05  max resid 0.0001267432 
## ... Similar to previous best
## Run 131 stress 0.03577096 
## Run 132 stress 0.03752411 
## Run 133 stress 0.03393549 
## Run 134 stress 0.0364482 
## Run 135 stress 0.03752411 
## Run 136 stress 0.03172159 
## ... Procrustes: rmse 5.101084e-06  max resid 1.502386e-05 
## ... Similar to previous best
## Run 137 stress 0.03644819 
## Run 138 stress 0.03393551 
## Run 139 stress 0.03675995 
## Run 140 stress 0.0317216 
## ... Procrustes: rmse 9.347038e-06  max resid 3.303627e-05 
## ... Similar to previous best
## Run 141 stress 0.03866132 
## Run 142 stress 0.04599195 
## Run 143 stress 0.03577052 
## Run 144 stress 0.0375188 
## Run 145 stress 0.03644825 
## Run 146 stress 0.03172159 
## ... Procrustes: rmse 1.861399e-05  max resid 6.441513e-05 
## ... Similar to previous best
## Run 147 stress 0.03751763 
## Run 148 stress 0.03577049 
## Run 149 stress 0.03577094 
## Run 150 stress 0.03393548 
## Run 151 stress 0.03393549 
## Run 152 stress 0.03577098 
## Run 153 stress 0.04064951 
## Run 154 stress 0.03577092 
## Run 155 stress 0.3808352 
## Run 156 stress 0.03866128 
## Run 157 stress 0.0364482 
## Run 158 stress 0.03866127 
## Run 159 stress 0.2151142 
## Run 160 stress 0.0317216 
## ... Procrustes: rmse 2.393974e-05  max resid 7.555367e-05 
## ... Similar to previous best
## Run 161 stress 0.04065276 
## Run 162 stress 0.2152295 
## Run 163 stress 0.03577045 
## Run 164 stress 0.03644764 
## Run 165 stress 0.03752415 
## Run 166 stress 0.03752264 
## Run 167 stress 0.03577098 
## Run 168 stress 0.03644822 
## Run 169 stress 0.03577046 
## Run 170 stress 0.03866129 
## Run 171 stress 0.03172159 
## ... Procrustes: rmse 4.167718e-05  max resid 0.0001296064 
## ... Similar to previous best
## Run 172 stress 0.03577092 
## Run 173 stress 0.04065279 
## Run 174 stress 0.03172159 
## ... Procrustes: rmse 5.201376e-06  max resid 1.249908e-05 
## ... Similar to previous best
## Run 175 stress 0.03577055 
## Run 176 stress 0.03577044 
## Run 177 stress 0.03752409 
## Run 178 stress 0.03393548 
## Run 179 stress 0.0317216 
## ... Procrustes: rmse 2.378708e-05  max resid 7.217108e-05 
## ... Similar to previous best
## Run 180 stress 0.03577093 
## Run 181 stress 0.04064952 
## Run 182 stress 0.03644759 
## Run 183 stress 0.03644766 
## Run 184 stress 0.03393553 
## Run 185 stress 0.03393548 
## Run 186 stress 0.03172162 
## ... Procrustes: rmse 4.209568e-05  max resid 0.0001288405 
## ... Similar to previous best
## Run 187 stress 0.03172159 
## ... Procrustes: rmse 1.343114e-05  max resid 4.174197e-05 
## ... Similar to previous best
## Run 188 stress 0.03644824 
## Run 189 stress 0.03393549 
## Run 190 stress 0.03172158 
## ... New best solution
## ... Procrustes: rmse 4.635384e-06  max resid 1.201008e-05 
## ... Similar to previous best
## Run 191 stress 0.03866813 
## Run 192 stress 0.04618969 
## Run 193 stress 0.03393548 
## Run 194 stress 0.03675813 
## Run 195 stress 0.04457719 
## Run 196 stress 0.2149491 
## Run 197 stress 0.03866126 
## Run 198 stress 0.2155578 
## Run 199 stress 0.04064953 
## Run 200 stress 0.03866125 
## Run 201 stress 0.03577048 
## Run 202 stress 0.03866127 
## Run 203 stress 0.03675765 
## Run 204 stress 0.03393549 
## Run 205 stress 0.2155578 
## Run 206 stress 0.03866813 
## Run 207 stress 0.03644817 
## Run 208 stress 0.03577055 
## Run 209 stress 0.03393549 
## Run 210 stress 0.03172159 
## ... Procrustes: rmse 1.357796e-05  max resid 4.822393e-05 
## ... Similar to previous best
## Run 211 stress 0.03172158 
## ... New best solution
## ... Procrustes: rmse 1.015154e-05  max resid 3.189155e-05 
## ... Similar to previous best
## Run 212 stress 0.03172159 
## ... Procrustes: rmse 2.172457e-05  max resid 6.653185e-05 
## ... Similar to previous best
## Run 213 stress 0.03393556 
## Run 214 stress 0.03751883 
## Run 215 stress 0.03172159 
## ... Procrustes: rmse 3.023497e-05  max resid 0.0001067622 
## ... Similar to previous best
## Run 216 stress 0.03172159 
## ... Procrustes: rmse 1.924229e-05  max resid 6.571431e-05 
## ... Similar to previous best
## Run 217 stress 0.03866125 
## Run 218 stress 0.03644762 
## Run 219 stress 0.04064952 
## Run 220 stress 0.03172158 
## ... Procrustes: rmse 1.258584e-05  max resid 4.118397e-05 
## ... Similar to previous best
## Run 221 stress 0.03172161 
## ... Procrustes: rmse 4.755385e-05  max resid 0.0001504797 
## ... Similar to previous best
## Run 222 stress 0.0364476 
## Run 223 stress 0.03172158 
## ... Procrustes: rmse 1.029439e-05  max resid 3.240301e-05 
## ... Similar to previous best
## Run 224 stress 0.03172159 
## ... Procrustes: rmse 2.35693e-05  max resid 8.156604e-05 
## ... Similar to previous best
## Run 225 stress 0.03675998 
## Run 226 stress 0.03675996 
## Run 227 stress 0.03172159 
## ... Procrustes: rmse 2.26084e-05  max resid 6.676822e-05 
## ... Similar to previous best
## Run 228 stress 0.03644819 
## Run 229 stress 0.04064946 
## Run 230 stress 0.03644824 
## Run 231 stress 0.03393549 
## Run 232 stress 0.03644761 
## Run 233 stress 0.3738536 
## Run 234 stress 0.04598733 
## Run 235 stress 0.03866812 
## Run 236 stress 0.03644761 
## Run 237 stress 0.03644761 
## Run 238 stress 0.0317216 
## ... Procrustes: rmse 3.533371e-05  max resid 0.0001072037 
## ... Similar to previous best
## Run 239 stress 0.03644818 
## Run 240 stress 0.03866133 
## Run 241 stress 0.03866126 
## Run 242 stress 0.03866131 
## Run 243 stress 0.03172161 
## ... Procrustes: rmse 5.196744e-05  max resid 0.0001795443 
## ... Similar to previous best
## Run 244 stress 0.03172158 
## ... Procrustes: rmse 1.019076e-05  max resid 3.012645e-05 
## ... Similar to previous best
## Run 245 stress 0.03751759 
## Run 246 stress 0.03577051 
## Run 247 stress 0.03172159 
## ... Procrustes: rmse 2.015976e-05  max resid 6.226827e-05 
## ... Similar to previous best
## Run 248 stress 0.0317216 
## ... Procrustes: rmse 3.288383e-05  max resid 9.98017e-05 
## ... Similar to previous best
## Run 249 stress 0.03873351 
## Run 250 stress 0.1883273 
## Run 251 stress 0.03866127 
## Run 252 stress 0.04064946 
## Run 253 stress 0.03172164 
## ... Procrustes: rmse 7.226193e-05  max resid 0.0002229758 
## ... Similar to previous best
## Run 254 stress 0.03644761 
## Run 255 stress 0.03172159 
## ... Procrustes: rmse 2.429931e-05  max resid 7.281381e-05 
## ... Similar to previous best
## Run 256 stress 0.0317216 
## ... Procrustes: rmse 4.322987e-05  max resid 0.0001307226 
## ... Similar to previous best
## Run 257 stress 0.03752264 
## Run 258 stress 0.03644764 
## Run 259 stress 0.03172159 
## ... Procrustes: rmse 2.159044e-05  max resid 6.564351e-05 
## ... Similar to previous best
## Run 260 stress 0.0317216 
## ... Procrustes: rmse 4.589284e-05  max resid 0.0001409641 
## ... Similar to previous best
## Run 261 stress 0.03866126 
## Run 262 stress 0.03577054 
## Run 263 stress 0.03577091 
## Run 264 stress 0.03577051 
## Run 265 stress 0.03577095 
## Run 266 stress 0.03393551 
## Run 267 stress 0.03577089 
## Run 268 stress 0.03172166 
## ... Procrustes: rmse 8.251242e-05  max resid 0.0002496492 
## ... Similar to previous best
## Run 269 stress 0.04064948 
## Run 270 stress 0.04065271 
## Run 271 stress 0.03172158 
## ... Procrustes: rmse 6.424812e-06  max resid 1.933787e-05 
## ... Similar to previous best
## Run 272 stress 0.03577046 
## Run 273 stress 0.03752409 
## Run 274 stress 0.0317216 
## ... Procrustes: rmse 4.611654e-05  max resid 0.00014087 
## ... Similar to previous best
## Run 275 stress 0.03393549 
## Run 276 stress 0.04599193 
## Run 277 stress 0.03172158 
## ... Procrustes: rmse 1.277194e-05  max resid 4.058951e-05 
## ... Similar to previous best
## Run 278 stress 0.03866812 
## Run 279 stress 0.03752417 
## Run 280 stress 0.03752416 
## Run 281 stress 0.03644766 
## Run 282 stress 0.03172159 
## ... Procrustes: rmse 1.746034e-05  max resid 6.038519e-05 
## ... Similar to previous best
## Run 283 stress 0.03675999 
## Run 284 stress 0.03676005 
## Run 285 stress 0.03393548 
## Run 286 stress 0.03644763 
## Run 287 stress 0.03172161 
## ... Procrustes: rmse 5.191311e-05  max resid 0.0001671789 
## ... Similar to previous best
## Run 288 stress 0.03393551 
## Run 289 stress 0.03172164 
## ... Procrustes: rmse 6.213399e-05  max resid 0.0002026418 
## ... Similar to previous best
## Run 290 stress 0.03866127 
## Run 291 stress 0.03644767 
## Run 292 stress 0.0317216 
## ... Procrustes: rmse 2.652908e-05  max resid 8.941666e-05 
## ... Similar to previous best
## Run 293 stress 0.0339355 
## Run 294 stress 0.03644763 
## Run 295 stress 0.03676003 
## Run 296 stress 0.215679 
## Run 297 stress 0.04065273 
## Run 298 stress 0.04064949 
## Run 299 stress 0.03577043 
## Run 300 stress 0.0339355 
## Run 301 stress 0.0367577 
## Run 302 stress 0.03644818 
## Run 303 stress 0.03393548 
## Run 304 stress 0.0317216 
## ... Procrustes: rmse 3.679027e-05  max resid 0.0001306626 
## ... Similar to previous best
## Run 305 stress 0.03393548 
## Run 306 stress 0.03393548 
## Run 307 stress 0.03172159 
## ... Procrustes: rmse 4.789629e-06  max resid 1.469686e-05 
## ... Similar to previous best
## Run 308 stress 0.04461768 
## Run 309 stress 0.03675807 
## Run 310 stress 0.03172164 
## ... Procrustes: rmse 7.130637e-05  max resid 0.0002134348 
## ... Similar to previous best
## Run 311 stress 0.03577044 
## Run 312 stress 0.03644818 
## Run 313 stress 0.03172163 
## ... Procrustes: rmse 6.887714e-05  max resid 0.0002161924 
## ... Similar to previous best
## Run 314 stress 0.03644768 
## Run 315 stress 0.03752419 
## Run 316 stress 0.04457719 
## Run 317 stress 0.03644818 
## Run 318 stress 0.04064955 
## Run 319 stress 0.03172159 
## ... Procrustes: rmse 2.239151e-05  max resid 6.883682e-05 
## ... Similar to previous best
## Run 320 stress 0.03577051 
## Run 321 stress 0.03172158 
## ... Procrustes: rmse 1.024655e-05  max resid 3.078095e-05 
## ... Similar to previous best
## Run 322 stress 0.03644764 
## Run 323 stress 0.0317216 
## ... Procrustes: rmse 3.519276e-05  max resid 0.0001244958 
## ... Similar to previous best
## Run 324 stress 0.03675998 
## Run 325 stress 0.05475657 
## Run 326 stress 0.03644761 
## Run 327 stress 0.03577096 
## Run 328 stress 0.03172159 
## ... Procrustes: rmse 2.871673e-05  max resid 9.011797e-05 
## ... Similar to previous best
## Run 329 stress 0.03172159 
## ... Procrustes: rmse 1.674159e-05  max resid 5.713531e-05 
## ... Similar to previous best
## Run 330 stress 0.03172161 
## ... Procrustes: rmse 5.054049e-05  max resid 0.0001796464 
## ... Similar to previous best
## Run 331 stress 0.03393551 
## Run 332 stress 0.0339355 
## Run 333 stress 0.0317216 
## ... Procrustes: rmse 2.593314e-05  max resid 8.930548e-05 
## ... Similar to previous best
## Run 334 stress 0.03577098 
## Run 335 stress 0.03393551 
## Run 336 stress 0.03172159 
## ... Procrustes: rmse 2.861985e-05  max resid 8.718963e-05 
## ... Similar to previous best
## Run 337 stress 0.0364482 
## Run 338 stress 0.03675767 
## Run 339 stress 0.03393549 
## Run 340 stress 0.0375176 
## Run 341 stress 0.03675999 
## Run 342 stress 0.04455391 
## Run 343 stress 0.03393552 
## Run 344 stress 0.03751768 
## Run 345 stress 0.03393548 
## Run 346 stress 0.03644817 
## Run 347 stress 0.1736602 
## Run 348 stress 0.0375188 
## Run 349 stress 0.0339355 
## Run 350 stress 0.03577046 
## Run 351 stress 0.05475663 
## Run 352 stress 0.2156908 
## Run 353 stress 0.03393548 
## Run 354 stress 0.03393553 
## Run 355 stress 0.03577044 
## Run 356 stress 0.03172159 
## ... Procrustes: rmse 1.928647e-05  max resid 6.015821e-05 
## ... Similar to previous best
## Run 357 stress 0.03393548 
## Run 358 stress 0.04457724 
## Run 359 stress 0.2155465 
## Run 360 stress 0.04461495 
## Run 361 stress 0.03675765 
## Run 362 stress 0.03644761 
## Run 363 stress 0.03644769 
## Run 364 stress 0.03577097 
## Run 365 stress 0.03172161 
## ... Procrustes: rmse 5.126539e-05  max resid 0.0001475918 
## ... Similar to previous best
## Run 366 stress 0.0317216 
## ... Procrustes: rmse 3.32472e-05  max resid 0.0001061806 
## ... Similar to previous best
## Run 367 stress 0.04599197 
## Run 368 stress 0.03644771 
## Run 369 stress 0.0340388 
## Run 370 stress 0.03393551 
## Run 371 stress 0.03172158 
## ... Procrustes: rmse 1.606546e-05  max resid 4.8724e-05 
## ... Similar to previous best
## Run 372 stress 0.03751889 
## Run 373 stress 0.1873379 
## Run 374 stress 0.03675765 
## Run 375 stress 0.03866818 
## Run 376 stress 0.03172158 
## ... Procrustes: rmse 9.694067e-06  max resid 2.804125e-05 
## ... Similar to previous best
## Run 377 stress 0.03577104 
## Run 378 stress 0.03172161 
## ... Procrustes: rmse 5.41734e-05  max resid 0.0001651783 
## ... Similar to previous best
## Run 379 stress 0.03866812 
## Run 380 stress 0.04065273 
## Run 381 stress 0.03577097 
## Run 382 stress 0.04456405 
## Run 383 stress 0.03752411 
## Run 384 stress 0.03866129 
## Run 385 stress 0.0317216 
## ... Procrustes: rmse 3.364867e-05  max resid 0.0001210813 
## ... Similar to previous best
## Run 386 stress 0.03172158 
## ... Procrustes: rmse 1.199471e-05  max resid 3.61846e-05 
## ... Similar to previous best
## Run 387 stress 0.03172159 
## ... Procrustes: rmse 3.302034e-05  max resid 0.0001012959 
## ... Similar to previous best
## Run 388 stress 0.03393553 
## Run 389 stress 0.0339355 
## Run 390 stress 0.03577045 
## Run 391 stress 0.05308618 
## Run 392 stress 0.03393548 
## Run 393 stress 0.03644764 
## Run 394 stress 0.03172166 
## ... Procrustes: rmse 7.074441e-05  max resid 0.0002160201 
## ... Similar to previous best
## Run 395 stress 0.0317216 
## ... Procrustes: rmse 3.868716e-05  max resid 0.0001213492 
## ... Similar to previous best
## Run 396 stress 0.03172159 
## ... Procrustes: rmse 2.55762e-05  max resid 7.121404e-05 
## ... Similar to previous best
## Run 397 stress 0.03675799 
## Run 398 stress 0.03752266 
## Run 399 stress 0.03577096 
## Run 400 stress 0.03393548 
## Run 401 stress 0.03866128 
## Run 402 stress 0.03676005 
## Run 403 stress 0.03866126 
## Run 404 stress 0.03393551 
## Run 405 stress 0.0386613 
## Run 406 stress 0.05475707 
## Run 407 stress 0.03675775 
## Run 408 stress 0.03172158 
## ... Procrustes: rmse 7.26745e-06  max resid 1.821956e-05 
## ... Similar to previous best
## Run 409 stress 0.03866129 
## Run 410 stress 0.03675996 
## Run 411 stress 0.0317216 
## ... Procrustes: rmse 3.510869e-05  max resid 0.0001079812 
## ... Similar to previous best
## Run 412 stress 0.03577047 
## Run 413 stress 0.1830269 
## Run 414 stress 0.03172161 
## ... Procrustes: rmse 4.791954e-05  max resid 0.0001500392 
## ... Similar to previous best
## Run 415 stress 0.03644821 
## Run 416 stress 0.03172162 
## ... Procrustes: rmse 5.443775e-05  max resid 0.0001647468 
## ... Similar to previous best
## Run 417 stress 0.03644827 
## Run 418 stress 0.03644763 
## Run 419 stress 0.03675996 
## Run 420 stress 0.03752264 
## Run 421 stress 0.03577044 
## Run 422 stress 0.03644768 
## Run 423 stress 0.03172159 
## ... Procrustes: rmse 2.082013e-05  max resid 6.376265e-05 
## ... Similar to previous best
## Run 424 stress 0.03644816 
## Run 425 stress 0.03577058 
## Run 426 stress 0.04064952 
## Run 427 stress 0.1906383 
## Run 428 stress 0.2156908 
## Run 429 stress 0.03393551 
## Run 430 stress 0.03393548 
## Run 431 stress 0.03644763 
## Run 432 stress 0.03873352 
## Run 433 stress 0.03393551 
## Run 434 stress 0.03866126 
## Run 435 stress 0.03172163 
## ... Procrustes: rmse 6.630193e-05  max resid 0.0002013991 
## ... Similar to previous best
## Run 436 stress 0.03577047 
## Run 437 stress 0.03172159 
## ... Procrustes: rmse 1.301653e-05  max resid 4.433644e-05 
## ... Similar to previous best
## Run 438 stress 0.03675766 
## Run 439 stress 0.0339355 
## Run 440 stress 0.0406495 
## Run 441 stress 0.03577048 
## Run 442 stress 0.03675806 
## Run 443 stress 0.03393549 
## Run 444 stress 0.03393552 
## Run 445 stress 0.03577048 
## Run 446 stress 0.03172161 
## ... Procrustes: rmse 4.883999e-05  max resid 0.0001573987 
## ... Similar to previous best
## Run 447 stress 0.03577089 
## Run 448 stress 0.03675807 
## Run 449 stress 0.03644759 
## Run 450 stress 0.03172159 
## ... Procrustes: rmse 2.119965e-05  max resid 6.860624e-05 
## ... Similar to previous best
## Run 451 stress 0.03644762 
## Run 452 stress 0.03866129 
## Run 453 stress 0.03752271 
## Run 454 stress 0.04599197 
## Run 455 stress 0.03644823 
## Run 456 stress 0.04457724 
## Run 457 stress 0.04064954 
## Run 458 stress 0.03675801 
## Run 459 stress 0.1812318 
## Run 460 stress 0.03866124 
## Run 461 stress 0.03577099 
## Run 462 stress 0.03172161 
## ... Procrustes: rmse 4.267956e-05  max resid 0.0001531415 
## ... Similar to previous best
## Run 463 stress 0.03866811 
## Run 464 stress 0.03644819 
## Run 465 stress 0.03172159 
## ... Procrustes: rmse 2.820769e-05  max resid 0.0001001068 
## ... Similar to previous best
## Run 466 stress 0.03644763 
## Run 467 stress 0.03644763 
## Run 468 stress 0.03751878 
## Run 469 stress 0.03393549 
## Run 470 stress 0.03675998 
## Run 471 stress 0.03172164 
## ... Procrustes: rmse 7.302234e-05  max resid 0.0002227704 
## ... Similar to previous best
## Run 472 stress 0.0367602 
## Run 473 stress 0.2156323 
## Run 474 stress 0.2156679 
## Run 475 stress 0.03644765 
## Run 476 stress 0.03866129 
## Run 477 stress 0.03393548 
## Run 478 stress 0.03644759 
## Run 479 stress 0.03393548 
## Run 480 stress 0.03676002 
## Run 481 stress 0.0364476 
## Run 482 stress 0.03577049 
## Run 483 stress 0.03866126 
## Run 484 stress 0.03577048 
## Run 485 stress 0.0317216 
## ... Procrustes: rmse 4.247788e-05  max resid 0.0001433155 
## ... Similar to previous best
## Run 486 stress 0.03393549 
## Run 487 stress 0.03393548 
## Run 488 stress 0.0406495 
## Run 489 stress 0.03644762 
## Run 490 stress 0.03577104 
## Run 491 stress 0.03866129 
## Run 492 stress 0.03866816 
## Run 493 stress 0.03393552 
## Run 494 stress 0.03172159 
## ... Procrustes: rmse 2.925937e-05  max resid 0.0001034529 
## ... Similar to previous best
## Run 495 stress 0.03866811 
## Run 496 stress 0.03752409 
## Run 497 stress 0.03393548 
## Run 498 stress 0.04458616 
## Run 499 stress 0.03752413 
## Run 500 stress 0.03752273 
## *** Best solution repeated 65 times
round(fd_NMDS$stress, digits = 2)
## [1] 0.03
# Mixed and stratified lakes
fdms_NMDS <- metaMDS(fdms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.0297451 
## Run 1 stress 0.0239786 
## ... New best solution
## ... Procrustes: rmse 0.05177576  max resid 0.1310531 
## Run 2 stress 0.03160261 
## Run 3 stress 0.02975951 
## Run 4 stress 0.03040206 
## Run 5 stress 0.06145217 
## Run 6 stress 0.0272182 
## Run 7 stress 0.03162927 
## Run 8 stress 0.02721655 
## Run 9 stress 0.03035655 
## Run 10 stress 0.03035655 
## Run 11 stress 0.0613575 
## Run 12 stress 0.03162942 
## Run 13 stress 0.0297451 
## Run 14 stress 0.06124242 
## Run 15 stress 0.03164951 
## Run 16 stress 0.0297451 
## Run 17 stress 0.06145202 
## Run 18 stress 0.03162191 
## Run 19 stress 0.0303565 
## Run 20 stress 0.06148343 
## Run 21 stress 0.06085681 
## Run 22 stress 0.02721656 
## Run 23 stress 0.02975952 
## Run 24 stress 0.03035658 
## Run 25 stress 0.03160243 
## Run 26 stress 0.06135757 
## Run 27 stress 0.02975951 
## Run 28 stress 0.03164954 
## Run 29 stress 0.03035935 
## Run 30 stress 0.02975952 
## Run 31 stress 0.06748642 
## Run 32 stress 0.0297451 
## Run 33 stress 0.02975954 
## Run 34 stress 0.02721811 
## Run 35 stress 0.03035659 
## Run 36 stress 0.0297451 
## Run 37 stress 0.06749084 
## Run 38 stress 0.02397858 
## ... New best solution
## ... Procrustes: rmse 2.230542e-05  max resid 4.083353e-05 
## ... Similar to previous best
## Run 39 stress 0.03035657 
## Run 40 stress 0.03035927 
## Run 41 stress 0.02975952 
## Run 42 stress 0.02975952 
## Run 43 stress 0.06085669 
## Run 44 stress 0.03162196 
## Run 45 stress 0.02974511 
## Run 46 stress 0.02974511 
## Run 47 stress 0.0297451 
## Run 48 stress 0.02721815 
## Run 49 stress 0.02721657 
## Run 50 stress 0.02721809 
## Run 51 stress 0.02397857 
## ... New best solution
## ... Procrustes: rmse 2.031708e-05  max resid 3.523251e-05 
## ... Similar to previous best
## Run 52 stress 0.02723761 
## Run 53 stress 0.02721815 
## Run 54 stress 0.06082257 
## Run 55 stress 0.02721661 
## Run 56 stress 0.03035666 
## Run 57 stress 0.03160269 
## Run 58 stress 0.02974511 
## Run 59 stress 0.0297595 
## Run 60 stress 0.02721659 
## Run 61 stress 0.02397859 
## ... Procrustes: rmse 0.0001002507  max resid 0.0001562791 
## ... Similar to previous best
## Run 62 stress 0.02975951 
## Run 63 stress 0.02974512 
## Run 64 stress 0.02721655 
## Run 65 stress 0.02397859 
## ... Procrustes: rmse 3.804309e-05  max resid 6.718769e-05 
## ... Similar to previous best
## Run 66 stress 0.03035655 
## Run 67 stress 0.06123865 
## Run 68 stress 0.0297451 
## Run 69 stress 0.02974513 
## Run 70 stress 0.0303565 
## Run 71 stress 0.02975952 
## Run 72 stress 0.03035929 
## Run 73 stress 0.03035649 
## Run 74 stress 0.02399583 
## ... Procrustes: rmse 0.00128965  max resid 0.003833083 
## ... Similar to previous best
## Run 75 stress 0.07130468 
## Run 76 stress 0.03164927 
## Run 77 stress 0.06128628 
## Run 78 stress 0.0297451 
## Run 79 stress 0.0297595 
## Run 80 stress 0.02399586 
## ... Procrustes: rmse 0.001282703  max resid 0.003778664 
## ... Similar to previous best
## Run 81 stress 0.06123847 
## Run 82 stress 0.02721655 
## Run 83 stress 0.03035658 
## Run 84 stress 0.06123851 
## Run 85 stress 0.03162195 
## Run 86 stress 0.0272375 
## Run 87 stress 0.02721813 
## Run 88 stress 0.03160259 
## Run 89 stress 0.02974512 
## Run 90 stress 0.03035926 
## Run 91 stress 0.0297451 
## Run 92 stress 0.0272166 
## Run 93 stress 0.03160247 
## Run 94 stress 0.02721657 
## Run 95 stress 0.06085684 
## Run 96 stress 0.03035925 
## Run 97 stress 0.0713033 
## Run 98 stress 0.02721662 
## Run 99 stress 0.02974514 
## Run 100 stress 0.02975951 
## Run 101 stress 0.0316219 
## Run 102 stress 0.06748643 
## Run 103 stress 0.03035658 
## Run 104 stress 0.0303565 
## Run 105 stress 0.0297451 
## Run 106 stress 0.02723721 
## Run 107 stress 0.03162193 
## Run 108 stress 0.02975953 
## Run 109 stress 0.06134225 
## Run 110 stress 0.03164944 
## Run 111 stress 0.02974514 
## Run 112 stress 0.06749083 
## Run 113 stress 0.03162193 
## Run 114 stress 0.02721812 
## Run 115 stress 0.0303565 
## Run 116 stress 0.0272181 
## Run 117 stress 0.0297451 
## Run 118 stress 0.03162192 
## Run 119 stress 0.06128632 
## Run 120 stress 0.03035925 
## Run 121 stress 0.03035649 
## Run 122 stress 0.03035649 
## Run 123 stress 0.02975951 
## Run 124 stress 0.06749075 
## Run 125 stress 0.02721655 
## Run 126 stress 0.0297451 
## Run 127 stress 0.02399587 
## ... Procrustes: rmse 0.001327819  max resid 0.004070277 
## ... Similar to previous best
## Run 128 stress 0.02721663 
## Run 129 stress 0.02721654 
## Run 130 stress 0.02723758 
## Run 131 stress 0.03162917 
## Run 132 stress 0.02974514 
## Run 133 stress 0.02974511 
## Run 134 stress 0.03040212 
## Run 135 stress 0.02723721 
## Run 136 stress 0.02974511 
## Run 137 stress 0.0272166 
## Run 138 stress 0.03035935 
## Run 139 stress 0.07130478 
## Run 140 stress 0.03035651 
## Run 141 stress 0.03035926 
## Run 142 stress 0.06749083 
## Run 143 stress 0.02974513 
## Run 144 stress 0.03160248 
## Run 145 stress 0.0297451 
## Run 146 stress 0.06085697 
## Run 147 stress 0.06128623 
## Run 148 stress 0.0303565 
## Run 149 stress 0.06145188 
## Run 150 stress 0.06145206 
## Run 151 stress 0.03035925 
## Run 152 stress 0.02721654 
## Run 153 stress 0.03160241 
## Run 154 stress 0.02975954 
## Run 155 stress 0.03035925 
## Run 156 stress 0.0272375 
## Run 157 stress 0.03035924 
## Run 158 stress 0.06134226 
## Run 159 stress 0.02975951 
## Run 160 stress 0.02399583 
## ... Procrustes: rmse 0.001316354  max resid 0.004007681 
## ... Similar to previous best
## Run 161 stress 0.02399583 
## ... Procrustes: rmse 0.001312855  max resid 0.003987825 
## ... Similar to previous best
## Run 162 stress 0.06128632 
## Run 163 stress 0.06085715 
## Run 164 stress 0.03035928 
## Run 165 stress 0.02397856 
## ... New best solution
## ... Procrustes: rmse 6.556799e-05  max resid 0.0001094471 
## ... Similar to previous best
## Run 166 stress 0.2528081 
## Run 167 stress 0.03035937 
## Run 168 stress 0.03160254 
## Run 169 stress 0.02975951 
## Run 170 stress 0.03035933 
## Run 171 stress 0.03162191 
## Run 172 stress 0.02397859 
## ... Procrustes: rmse 9.535803e-05  max resid 0.0001567091 
## ... Similar to previous best
## Run 173 stress 0.0608567 
## Run 174 stress 0.02721658 
## Run 175 stress 0.03035651 
## Run 176 stress 0.0612424 
## Run 177 stress 0.02974511 
## Run 178 stress 0.0297451 
## Run 179 stress 0.03035658 
## Run 180 stress 0.0272372 
## Run 181 stress 0.03040222 
## Run 182 stress 0.03164935 
## Run 183 stress 0.0297451 
## Run 184 stress 0.03162945 
## Run 185 stress 0.06082285 
## Run 186 stress 0.02721814 
## Run 187 stress 0.02721657 
## Run 188 stress 0.06145254 
## Run 189 stress 0.02723752 
## Run 190 stress 0.06082266 
## Run 191 stress 0.02974511 
## Run 192 stress 0.02721662 
## Run 193 stress 0.03035659 
## Run 194 stress 0.02721809 
## Run 195 stress 0.02721812 
## Run 196 stress 0.02975953 
## Run 197 stress 0.0297451 
## Run 198 stress 0.02721656 
## Run 199 stress 0.07130341 
## Run 200 stress 0.02399583 
## ... Procrustes: rmse 0.001295518  max resid 0.00380844 
## ... Similar to previous best
## Run 201 stress 0.03162205 
## Run 202 stress 0.03035662 
## Run 203 stress 0.03035655 
## Run 204 stress 0.02397857 
## ... Procrustes: rmse 8.101272e-05  max resid 0.0001378887 
## ... Similar to previous best
## Run 205 stress 0.0297451 
## Run 206 stress 0.02399587 
## ... Procrustes: rmse 0.001321141  max resid 0.004006936 
## ... Similar to previous best
## Run 207 stress 0.02721818 
## Run 208 stress 0.02975951 
## Run 209 stress 0.02975952 
## Run 210 stress 0.02721815 
## Run 211 stress 0.03035653 
## Run 212 stress 0.03035651 
## Run 213 stress 0.060823 
## Run 214 stress 0.02975952 
## Run 215 stress 0.02975951 
## Run 216 stress 0.02721813 
## Run 217 stress 0.02975958 
## Run 218 stress 0.02975951 
## Run 219 stress 0.02721811 
## Run 220 stress 0.07130476 
## Run 221 stress 0.02723752 
## Run 222 stress 0.02974514 
## Run 223 stress 0.06082294 
## Run 224 stress 0.36574 
## Run 225 stress 0.03035655 
## Run 226 stress 0.07130469 
## Run 227 stress 0.02721658 
## Run 228 stress 0.02974512 
## Run 229 stress 0.06134537 
## Run 230 stress 0.03164927 
## Run 231 stress 0.06128629 
## Run 232 stress 0.03035926 
## Run 233 stress 0.02974512 
## Run 234 stress 0.03162915 
## Run 235 stress 0.03160249 
## Run 236 stress 0.02397856 
## ... Procrustes: rmse 6.029941e-05  max resid 0.0001003632 
## ... Similar to previous best
## Run 237 stress 0.02975951 
## Run 238 stress 0.02974513 
## Run 239 stress 0.0297595 
## Run 240 stress 0.03035934 
## Run 241 stress 0.02974512 
## Run 242 stress 0.02975951 
## Run 243 stress 0.0297595 
## Run 244 stress 0.02723725 
## Run 245 stress 0.03164958 
## Run 246 stress 0.02975952 
## Run 247 stress 0.02974511 
## Run 248 stress 0.02723718 
## Run 249 stress 0.02725041 
## Run 250 stress 0.03035652 
## Run 251 stress 0.03160241 
## Run 252 stress 0.02721656 
## Run 253 stress 0.02975951 
## Run 254 stress 0.02399587 
## ... Procrustes: rmse 0.001320687  max resid 0.004006086 
## ... Similar to previous best
## Run 255 stress 0.03035925 
## Run 256 stress 0.06128617 
## Run 257 stress 0.02399584 
## ... Procrustes: rmse 0.001314103  max resid 0.00396271 
## ... Similar to previous best
## Run 258 stress 0.06749083 
## Run 259 stress 0.03162197 
## Run 260 stress 0.02975953 
## Run 261 stress 0.02721659 
## Run 262 stress 0.2529907 
## Run 263 stress 0.02723752 
## Run 264 stress 0.06085705 
## Run 265 stress 0.07130349 
## Run 266 stress 0.03040208 
## Run 267 stress 0.03035928 
## Run 268 stress 0.02723751 
## Run 269 stress 0.03160248 
## Run 270 stress 0.06148333 
## Run 271 stress 0.03160261 
## Run 272 stress 0.02399587 
## ... Procrustes: rmse 0.001323468  max resid 0.004020865 
## ... Similar to previous best
## Run 273 stress 0.02721658 
## Run 274 stress 0.02721656 
## Run 275 stress 0.02975951 
## Run 276 stress 0.0297451 
## Run 277 stress 0.03162191 
## Run 278 stress 0.02974511 
## Run 279 stress 0.02721809 
## Run 280 stress 0.02397856 
## ... New best solution
## ... Procrustes: rmse 2.48319e-05  max resid 4.72834e-05 
## ... Similar to previous best
## Run 281 stress 0.02721663 
## Run 282 stress 0.02975951 
## Run 283 stress 0.03035651 
## Run 284 stress 0.03163521 
## Run 285 stress 0.06082249 
## Run 286 stress 0.06123852 
## Run 287 stress 0.02974512 
## Run 288 stress 0.06749083 
## Run 289 stress 0.06135716 
## Run 290 stress 0.03160251 
## Run 291 stress 0.03035925 
## Run 292 stress 0.0303565 
## Run 293 stress 0.03040294 
## Run 294 stress 0.06130695 
## Run 295 stress 0.03035655 
## Run 296 stress 0.02721811 
## Run 297 stress 0.03035924 
## Run 298 stress 0.0297595 
## Run 299 stress 0.02975952 
## Run 300 stress 0.06082298 
## Run 301 stress 0.02399582 
## ... Procrustes: rmse 0.001308731  max resid 0.003941133 
## ... Similar to previous best
## Run 302 stress 0.03160258 
## Run 303 stress 0.03160264 
## Run 304 stress 0.03035655 
## Run 305 stress 0.3657398 
## Run 306 stress 0.06082303 
## Run 307 stress 0.02397856 
## ... Procrustes: rmse 3.525046e-05  max resid 5.188045e-05 
## ... Similar to previous best
## Run 308 stress 0.02721659 
## Run 309 stress 0.06145153 
## Run 310 stress 0.0303565 
## Run 311 stress 0.02721809 
## Run 312 stress 0.03035652 
## Run 313 stress 0.06749083 
## Run 314 stress 0.06128604 
## Run 315 stress 0.02975951 
## Run 316 stress 0.03162923 
## Run 317 stress 0.02397862 
## ... Procrustes: rmse 8.150886e-05  max resid 0.0001489861 
## ... Similar to previous best
## Run 318 stress 0.0297451 
## Run 319 stress 0.03035664 
## Run 320 stress 0.03160271 
## Run 321 stress 0.06085652 
## Run 322 stress 0.02974511 
## Run 323 stress 0.03035939 
## Run 324 stress 0.06085683 
## Run 325 stress 0.06749084 
## Run 326 stress 0.02721809 
## Run 327 stress 0.02723755 
## Run 328 stress 0.02723757 
## Run 329 stress 0.06749083 
## Run 330 stress 0.02397855 
## ... New best solution
## ... Procrustes: rmse 1.786158e-05  max resid 2.885038e-05 
## ... Similar to previous best
## Run 331 stress 0.0297451 
## Run 332 stress 0.0297595 
## Run 333 stress 0.0272376 
## Run 334 stress 0.03160245 
## Run 335 stress 0.03035925 
## Run 336 stress 0.03035658 
## Run 337 stress 0.02974513 
## Run 338 stress 0.02397856 
## ... Procrustes: rmse 2.626585e-05  max resid 5.024898e-05 
## ... Similar to previous best
## Run 339 stress 0.03162924 
## Run 340 stress 0.03035649 
## Run 341 stress 0.2207036 
## Run 342 stress 0.02975951 
## Run 343 stress 0.02723755 
## Run 344 stress 0.02721811 
## Run 345 stress 0.02721656 
## Run 346 stress 0.03035664 
## Run 347 stress 0.06135755 
## Run 348 stress 0.02975952 
## Run 349 stress 0.02975952 
## Run 350 stress 0.06123846 
## Run 351 stress 0.0297451 
## Run 352 stress 0.02397859 
## ... Procrustes: rmse 7.112146e-05  max resid 0.0001190799 
## ... Similar to previous best
## Run 353 stress 0.02974513 
## Run 354 stress 0.02399582 
## ... Procrustes: rmse 0.001310502  max resid 0.003960146 
## ... Similar to previous best
## Run 355 stress 0.0316292 
## Run 356 stress 0.02975951 
## Run 357 stress 0.02975954 
## Run 358 stress 0.03162189 
## Run 359 stress 0.0297451 
## Run 360 stress 0.03035655 
## Run 361 stress 0.0612425 
## Run 362 stress 0.03035928 
## Run 363 stress 0.02397855 
## ... New best solution
## ... Procrustes: rmse 1.726121e-05  max resid 2.965459e-05 
## ... Similar to previous best
## Run 364 stress 0.0297451 
## Run 365 stress 0.02974512 
## Run 366 stress 0.03035656 
## Run 367 stress 0.0297451 
## Run 368 stress 0.02721665 
## Run 369 stress 0.0614522 
## Run 370 stress 0.02975952 
## Run 371 stress 0.03163539 
## Run 372 stress 0.0272181 
## Run 373 stress 0.03035658 
## Run 374 stress 0.0297451 
## Run 375 stress 0.03035935 
## Run 376 stress 0.06082302 
## Run 377 stress 0.03035937 
## Run 378 stress 0.03164956 
## Run 379 stress 0.02975953 
## Run 380 stress 0.03162947 
## Run 381 stress 0.02974511 
## Run 382 stress 0.06124247 
## Run 383 stress 0.0272181 
## Run 384 stress 0.03162203 
## Run 385 stress 0.03035651 
## Run 386 stress 0.02721661 
## Run 387 stress 0.02397857 
## ... Procrustes: rmse 5.721691e-05  max resid 9.201962e-05 
## ... Similar to previous best
## Run 388 stress 0.0614526 
## Run 389 stress 0.06123855 
## Run 390 stress 0.02975951 
## Run 391 stress 0.02721656 
## Run 392 stress 0.03035928 
## Run 393 stress 0.03162936 
## Run 394 stress 0.06082265 
## Run 395 stress 0.02399584 
## ... Procrustes: rmse 0.001289616  max resid 0.003790404 
## ... Similar to previous best
## Run 396 stress 0.02397855 
## ... Procrustes: rmse 1.258422e-05  max resid 2.121044e-05 
## ... Similar to previous best
## Run 397 stress 0.07130506 
## Run 398 stress 0.06127785 
## Run 399 stress 0.02399587 
## ... Procrustes: rmse 0.001323855  max resid 0.00403625 
## ... Similar to previous best
## Run 400 stress 0.0272166 
## Run 401 stress 0.02975951 
## Run 402 stress 0.0608565 
## Run 403 stress 0.02721815 
## Run 404 stress 0.02974512 
## Run 405 stress 0.06085662 
## Run 406 stress 0.03162925 
## Run 407 stress 0.02975952 
## Run 408 stress 0.06124246 
## Run 409 stress 0.0612425 
## Run 410 stress 0.0297451 
## Run 411 stress 0.02974511 
## Run 412 stress 0.02974511 
## Run 413 stress 0.02721817 
## Run 414 stress 0.03160241 
## Run 415 stress 0.02721809 
## Run 416 stress 0.03162923 
## Run 417 stress 0.03162939 
## Run 418 stress 0.02974512 
## Run 419 stress 0.02975952 
## Run 420 stress 0.060857 
## Run 421 stress 0.02721658 
## Run 422 stress 0.02975954 
## Run 423 stress 0.03162198 
## Run 424 stress 0.03035659 
## Run 425 stress 0.02721815 
## Run 426 stress 0.02721812 
## Run 427 stress 0.0303594 
## Run 428 stress 0.03162949 
## Run 429 stress 0.0316026 
## Run 430 stress 0.06085717 
## Run 431 stress 0.02723753 
## Run 432 stress 0.02721814 
## Run 433 stress 0.03162189 
## Run 434 stress 0.02397857 
## ... Procrustes: rmse 3.419607e-05  max resid 6.224576e-05 
## ... Similar to previous best
## Run 435 stress 0.03160265 
## Run 436 stress 0.02721809 
## Run 437 stress 0.03160254 
## Run 438 stress 0.02721655 
## Run 439 stress 0.03160242 
## Run 440 stress 0.06127796 
## Run 441 stress 0.06124246 
## Run 442 stress 0.03162195 
## Run 443 stress 0.02975951 
## Run 444 stress 0.0303565 
## Run 445 stress 0.0272166 
## Run 446 stress 0.02974511 
## Run 447 stress 0.02723753 
## Run 448 stress 0.03035651 
## Run 449 stress 0.03035655 
## Run 450 stress 0.02974511 
## Run 451 stress 0.06127772 
## Run 452 stress 0.02397857 
## ... Procrustes: rmse 3.806343e-05  max resid 6.706687e-05 
## ... Similar to previous best
## Run 453 stress 0.03162948 
## Run 454 stress 0.02975951 
## Run 455 stress 0.0608227 
## Run 456 stress 0.0297595 
## Run 457 stress 0.03160261 
## Run 458 stress 0.06127783 
## Run 459 stress 0.02721656 
## Run 460 stress 0.02974512 
## Run 461 stress 0.02974511 
## Run 462 stress 0.0297451 
## Run 463 stress 0.3657376 
## Run 464 stress 0.03160243 
## Run 465 stress 0.02974511 
## Run 466 stress 0.06134243 
## Run 467 stress 0.0612385 
## Run 468 stress 0.02974512 
## Run 469 stress 0.03162948 
## Run 470 stress 0.03162188 
## Run 471 stress 0.02974512 
## Run 472 stress 0.0297595 
## Run 473 stress 0.02397857 
## ... Procrustes: rmse 3.062213e-05  max resid 5.275771e-05 
## ... Similar to previous best
## Run 474 stress 0.03035928 
## Run 475 stress 0.03035652 
## Run 476 stress 0.03160248 
## Run 477 stress 0.0297451 
## Run 478 stress 0.03160248 
## Run 479 stress 0.03162942 
## Run 480 stress 0.07130464 
## Run 481 stress 0.02975951 
## Run 482 stress 0.02974512 
## Run 483 stress 0.03162194 
## Run 484 stress 0.02975955 
## Run 485 stress 0.03162925 
## Run 486 stress 0.02399584 
## ... Procrustes: rmse 0.001314301  max resid 0.003983754 
## ... Similar to previous best
## Run 487 stress 0.03035649 
## Run 488 stress 0.03035654 
## Run 489 stress 0.031622 
## Run 490 stress 0.06127772 
## Run 491 stress 0.0297451 
## Run 492 stress 0.02974513 
## Run 493 stress 0.06123866 
## Run 494 stress 0.2814089 
## Run 495 stress 0.03035662 
## Run 496 stress 0.06128613 
## Run 497 stress 0.02397856 
## ... Procrustes: rmse 1.96907e-05  max resid 3.825501e-05 
## ... Similar to previous best
## Run 498 stress 0.03035936 
## Run 499 stress 0.02974511 
## Run 500 stress 0.02397858 
## ... Procrustes: rmse 4.921419e-05  max resid 8.696662e-05 
## ... Similar to previous best
## *** Best solution repeated 11 times
# Ocean sites and mixed lakes
fdom_NMDS <- metaMDS(fdom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.04425405 
## Run 1 stress 0.1090294 
## Run 2 stress 0.1087681 
## Run 3 stress 0.04486724 
## Run 4 stress 0.04486723 
## Run 5 stress 0.1090294 
## Run 6 stress 0.04486723 
## Run 7 stress 0.04425405 
## ... Procrustes: rmse 7.686488e-06  max resid 1.277243e-05 
## ... Similar to previous best
## Run 8 stress 0.04425405 
## ... New best solution
## ... Procrustes: rmse 2.042435e-05  max resid 3.677507e-05 
## ... Similar to previous best
## Run 9 stress 0.04486725 
## Run 10 stress 0.04486729 
## Run 11 stress 0.04486724 
## Run 12 stress 0.04486724 
## Run 13 stress 0.04425405 
## ... Procrustes: rmse 1.614338e-05  max resid 3.111617e-05 
## ... Similar to previous best
## Run 14 stress 0.04425405 
## ... Procrustes: rmse 2.83826e-05  max resid 5.06022e-05 
## ... Similar to previous best
## Run 15 stress 0.04486722 
## Run 16 stress 0.04486723 
## Run 17 stress 0.04425405 
## ... Procrustes: rmse 2.45416e-05  max resid 4.351779e-05 
## ... Similar to previous best
## Run 18 stress 0.04425405 
## ... Procrustes: rmse 1.885688e-05  max resid 3.363988e-05 
## ... Similar to previous best
## Run 19 stress 0.04425406 
## ... Procrustes: rmse 4.536706e-05  max resid 8.543308e-05 
## ... Similar to previous best
## Run 20 stress 0.3330007 
## Run 21 stress 0.04486723 
## Run 22 stress 0.04425405 
## ... Procrustes: rmse 2.256112e-05  max resid 4.239838e-05 
## ... Similar to previous best
## Run 23 stress 0.04486722 
## Run 24 stress 0.04486723 
## Run 25 stress 0.04486725 
## Run 26 stress 0.04425406 
## ... Procrustes: rmse 4.807735e-05  max resid 8.642364e-05 
## ... Similar to previous best
## Run 27 stress 0.04425405 
## ... Procrustes: rmse 1.2626e-05  max resid 2.483102e-05 
## ... Similar to previous best
## Run 28 stress 0.1089043 
## Run 29 stress 0.04486722 
## Run 30 stress 0.1089044 
## Run 31 stress 0.1089044 
## Run 32 stress 0.04425405 
## ... Procrustes: rmse 2.324872e-05  max resid 4.115519e-05 
## ... Similar to previous best
## Run 33 stress 0.04486733 
## Run 34 stress 0.04425408 
## ... Procrustes: rmse 8.017843e-05  max resid 0.0001461854 
## ... Similar to previous best
## Run 35 stress 0.04425405 
## ... Procrustes: rmse 2.790645e-05  max resid 4.904862e-05 
## ... Similar to previous best
## Run 36 stress 0.04425405 
## ... Procrustes: rmse 7.477733e-06  max resid 1.448435e-05 
## ... Similar to previous best
## Run 37 stress 0.04486726 
## Run 38 stress 0.04425405 
## ... Procrustes: rmse 2.232682e-05  max resid 3.983214e-05 
## ... Similar to previous best
## Run 39 stress 0.04486725 
## Run 40 stress 0.109428 
## Run 41 stress 0.04425407 
## ... Procrustes: rmse 1.597795e-05  max resid 2.83163e-05 
## ... Similar to previous best
## Run 42 stress 0.04425405 
## ... Procrustes: rmse 2.680679e-05  max resid 4.791072e-05 
## ... Similar to previous best
## Run 43 stress 0.04425405 
## ... Procrustes: rmse 1.982636e-05  max resid 3.818107e-05 
## ... Similar to previous best
## Run 44 stress 0.1090295 
## Run 45 stress 0.04425405 
## ... Procrustes: rmse 2.336351e-05  max resid 4.082572e-05 
## ... Similar to previous best
## Run 46 stress 0.04486724 
## Run 47 stress 0.04486725 
## Run 48 stress 0.04425405 
## ... Procrustes: rmse 2.430143e-06  max resid 4.22709e-06 
## ... Similar to previous best
## Run 49 stress 0.04486722 
## Run 50 stress 0.04486723 
## Run 51 stress 0.1090296 
## Run 52 stress 0.04425405 
## ... Procrustes: rmse 2.652099e-05  max resid 4.608373e-05 
## ... Similar to previous best
## Run 53 stress 0.04486725 
## Run 54 stress 0.04486724 
## Run 55 stress 0.04486724 
## Run 56 stress 0.04486725 
## Run 57 stress 0.04486724 
## Run 58 stress 0.1089043 
## Run 59 stress 0.04425407 
## ... Procrustes: rmse 5.399767e-05  max resid 0.0001011503 
## ... Similar to previous best
## Run 60 stress 0.04425407 
## ... Procrustes: rmse 6.399347e-05  max resid 0.0001193801 
## ... Similar to previous best
## Run 61 stress 0.3495735 
## Run 62 stress 0.04425408 
## ... Procrustes: rmse 7.214262e-05  max resid 0.0001343087 
## ... Similar to previous best
## Run 63 stress 0.3173308 
## Run 64 stress 0.04425409 
## ... Procrustes: rmse 8.903292e-05  max resid 0.0001630086 
## ... Similar to previous best
## Run 65 stress 0.04425405 
## ... Procrustes: rmse 1.670987e-05  max resid 3.226735e-05 
## ... Similar to previous best
## Run 66 stress 0.04425408 
## ... Procrustes: rmse 7.564125e-05  max resid 0.0001382204 
## ... Similar to previous best
## Run 67 stress 0.04486729 
## Run 68 stress 0.04425405 
## ... Procrustes: rmse 1.960506e-05  max resid 3.535014e-05 
## ... Similar to previous best
## Run 69 stress 0.04486729 
## Run 70 stress 0.04425406 
## ... Procrustes: rmse 3.224952e-05  max resid 6.123117e-05 
## ... Similar to previous best
## Run 71 stress 0.04486727 
## Run 72 stress 0.04425406 
## ... Procrustes: rmse 4.427021e-05  max resid 8.293446e-05 
## ... Similar to previous best
## Run 73 stress 0.1089044 
## Run 74 stress 0.04425405 
## ... Procrustes: rmse 7.565792e-06  max resid 1.430687e-05 
## ... Similar to previous best
## Run 75 stress 0.04486727 
## Run 76 stress 0.04486731 
## Run 77 stress 0.04425405 
## ... Procrustes: rmse 5.384811e-06  max resid 1.026383e-05 
## ... Similar to previous best
## Run 78 stress 0.04425405 
## ... Procrustes: rmse 1.208774e-05  max resid 2.238569e-05 
## ... Similar to previous best
## Run 79 stress 0.04425407 
## ... Procrustes: rmse 6.885178e-05  max resid 0.0001258444 
## ... Similar to previous best
## Run 80 stress 0.04486722 
## Run 81 stress 0.04425405 
## ... Procrustes: rmse 1.063049e-05  max resid 2.078213e-05 
## ... Similar to previous best
## Run 82 stress 0.04425409 
## ... Procrustes: rmse 7.673199e-05  max resid 0.0001436172 
## ... Similar to previous best
## Run 83 stress 0.04425405 
## ... Procrustes: rmse 1.280958e-05  max resid 2.423896e-05 
## ... Similar to previous best
## Run 84 stress 0.04486725 
## Run 85 stress 0.04425407 
## ... Procrustes: rmse 6.232021e-05  max resid 0.0001124582 
## ... Similar to previous best
## Run 86 stress 0.04486724 
## Run 87 stress 0.04425406 
## ... Procrustes: rmse 3.772763e-05  max resid 6.806547e-05 
## ... Similar to previous best
## Run 88 stress 0.04425408 
## ... Procrustes: rmse 8.212144e-05  max resid 0.0001496456 
## ... Similar to previous best
## Run 89 stress 0.04486726 
## Run 90 stress 0.04425408 
## ... Procrustes: rmse 6.624815e-05  max resid 0.0001208415 
## ... Similar to previous best
## Run 91 stress 0.04486722 
## Run 92 stress 0.04425406 
## ... Procrustes: rmse 5.079881e-05  max resid 9.099339e-05 
## ... Similar to previous best
## Run 93 stress 0.04425405 
## ... Procrustes: rmse 1.19271e-05  max resid 2.195967e-05 
## ... Similar to previous best
## Run 94 stress 0.04425407 
## ... Procrustes: rmse 7.116315e-05  max resid 0.0001294395 
## ... Similar to previous best
## Run 95 stress 0.04486731 
## Run 96 stress 0.04486728 
## Run 97 stress 0.1089044 
## Run 98 stress 0.04486723 
## Run 99 stress 0.04486722 
## Run 100 stress 0.04425407 
## ... Procrustes: rmse 7.218107e-05  max resid 0.0001308875 
## ... Similar to previous best
## Run 101 stress 0.04425408 
## ... Procrustes: rmse 7.864826e-05  max resid 0.0001433288 
## ... Similar to previous best
## Run 102 stress 0.1087681 
## Run 103 stress 0.04425408 
## ... Procrustes: rmse 7.910117e-05  max resid 0.0001446076 
## ... Similar to previous best
## Run 104 stress 0.1090296 
## Run 105 stress 0.04486722 
## Run 106 stress 0.1089043 
## Run 107 stress 0.04486722 
## Run 108 stress 0.3281287 
## Run 109 stress 0.04486723 
## Run 110 stress 0.04425405 
## ... Procrustes: rmse 2.759632e-05  max resid 4.944841e-05 
## ... Similar to previous best
## Run 111 stress 0.04486725 
## Run 112 stress 0.1087681 
## Run 113 stress 0.04425405 
## ... Procrustes: rmse 1.311352e-05  max resid 2.367974e-05 
## ... Similar to previous best
## Run 114 stress 0.3495549 
## Run 115 stress 0.04425405 
## ... Procrustes: rmse 3.076249e-05  max resid 5.415698e-05 
## ... Similar to previous best
## Run 116 stress 0.04425405 
## ... Procrustes: rmse 2.059122e-05  max resid 3.695658e-05 
## ... Similar to previous best
## Run 117 stress 0.04425405 
## ... Procrustes: rmse 1.389734e-05  max resid 2.53336e-05 
## ... Similar to previous best
## Run 118 stress 0.04425405 
## ... Procrustes: rmse 1.636368e-06  max resid 3.753133e-06 
## ... Similar to previous best
## Run 119 stress 0.04425405 
## ... Procrustes: rmse 2.468653e-05  max resid 4.390238e-05 
## ... Similar to previous best
## Run 120 stress 0.1090295 
## Run 121 stress 0.1089045 
## Run 122 stress 0.1089045 
## Run 123 stress 0.04425405 
## ... Procrustes: rmse 2.152153e-05  max resid 3.759499e-05 
## ... Similar to previous best
## Run 124 stress 0.3578482 
## Run 125 stress 0.04425405 
## ... Procrustes: rmse 3.06726e-05  max resid 5.451939e-05 
## ... Similar to previous best
## Run 126 stress 0.04486722 
## Run 127 stress 0.04425405 
## ... Procrustes: rmse 3.172136e-05  max resid 5.651652e-05 
## ... Similar to previous best
## Run 128 stress 0.04425405 
## ... Procrustes: rmse 3.018856e-05  max resid 5.409683e-05 
## ... Similar to previous best
## Run 129 stress 0.04425407 
## ... Procrustes: rmse 1.575147e-05  max resid 3.760628e-05 
## ... Similar to previous best
## Run 130 stress 0.04425408 
## ... Procrustes: rmse 8.442955e-05  max resid 0.0001541369 
## ... Similar to previous best
## Run 131 stress 0.04425407 
## ... Procrustes: rmse 6.356742e-05  max resid 0.0001130116 
## ... Similar to previous best
## Run 132 stress 0.04425405 
## ... Procrustes: rmse 2.480463e-05  max resid 4.694877e-05 
## ... Similar to previous best
## Run 133 stress 0.04486728 
## Run 134 stress 0.04486722 
## Run 135 stress 0.04425407 
## ... Procrustes: rmse 5.901993e-05  max resid 0.0001098037 
## ... Similar to previous best
## Run 136 stress 0.04486728 
## Run 137 stress 0.04486722 
## Run 138 stress 0.04425407 
## ... Procrustes: rmse 5.077625e-05  max resid 9.563687e-05 
## ... Similar to previous best
## Run 139 stress 0.108768 
## Run 140 stress 0.04425407 
## ... Procrustes: rmse 5.449112e-05  max resid 0.0001024574 
## ... Similar to previous best
## Run 141 stress 0.04425408 
## ... Procrustes: rmse 7.577306e-05  max resid 0.000138719 
## ... Similar to previous best
## Run 142 stress 0.1089043 
## Run 143 stress 0.04486724 
## Run 144 stress 0.04425409 
## ... Procrustes: rmse 8.481821e-05  max resid 0.0001555829 
## ... Similar to previous best
## Run 145 stress 0.04486722 
## Run 146 stress 0.04425405 
## ... Procrustes: rmse 1.432796e-05  max resid 2.609993e-05 
## ... Similar to previous best
## Run 147 stress 0.0448673 
## Run 148 stress 0.1089043 
## Run 149 stress 0.04486727 
## Run 150 stress 0.04425407 
## ... Procrustes: rmse 6.247845e-05  max resid 0.000114221 
## ... Similar to previous best
## Run 151 stress 0.04425405 
## ... Procrustes: rmse 5.200063e-06  max resid 1.079288e-05 
## ... Similar to previous best
## Run 152 stress 0.04425405 
## ... Procrustes: rmse 2.420994e-05  max resid 4.540501e-05 
## ... Similar to previous best
## Run 153 stress 0.04486727 
## Run 154 stress 0.04486723 
## Run 155 stress 0.04486727 
## Run 156 stress 0.04425406 
## ... Procrustes: rmse 3.655644e-05  max resid 6.897295e-05 
## ... Similar to previous best
## Run 157 stress 0.04486722 
## Run 158 stress 0.04425405 
## ... Procrustes: rmse 2.950101e-05  max resid 5.297826e-05 
## ... Similar to previous best
## Run 159 stress 0.04425406 
## ... Procrustes: rmse 5.395915e-05  max resid 9.825667e-05 
## ... Similar to previous best
## Run 160 stress 0.04425406 
## ... Procrustes: rmse 4.949335e-05  max resid 9.286297e-05 
## ... Similar to previous best
## Run 161 stress 0.04425405 
## ... Procrustes: rmse 1.193351e-05  max resid 2.219645e-05 
## ... Similar to previous best
## Run 162 stress 0.04425405 
## ... Procrustes: rmse 2.490659e-05  max resid 4.708577e-05 
## ... Similar to previous best
## Run 163 stress 0.04425405 
## ... Procrustes: rmse 1.026618e-05  max resid 1.985986e-05 
## ... Similar to previous best
## Run 164 stress 0.04425406 
## ... Procrustes: rmse 5.276479e-05  max resid 9.579667e-05 
## ... Similar to previous best
## Run 165 stress 0.04425407 
## ... Procrustes: rmse 7.229725e-05  max resid 0.0001321399 
## ... Similar to previous best
## Run 166 stress 0.04425405 
## ... Procrustes: rmse 2.615107e-05  max resid 4.657303e-05 
## ... Similar to previous best
## Run 167 stress 0.04486723 
## Run 168 stress 0.1089043 
## Run 169 stress 0.1089043 
## Run 170 stress 0.04425405 
## ... Procrustes: rmse 1.61389e-05  max resid 2.698516e-05 
## ... Similar to previous best
## Run 171 stress 0.04425406 
## ... Procrustes: rmse 5.169388e-05  max resid 9.396035e-05 
## ... Similar to previous best
## Run 172 stress 0.04486722 
## Run 173 stress 0.3578488 
## Run 174 stress 0.04425405 
## ... Procrustes: rmse 3.023499e-05  max resid 5.435119e-05 
## ... Similar to previous best
## Run 175 stress 0.04486729 
## Run 176 stress 0.04425407 
## ... Procrustes: rmse 6.229117e-05  max resid 0.0001113658 
## ... Similar to previous best
## Run 177 stress 0.04425405 
## ... Procrustes: rmse 3.711298e-05  max resid 6.615932e-05 
## ... Similar to previous best
## Run 178 stress 0.04425408 
## ... Procrustes: rmse 7.468719e-05  max resid 0.0001355585 
## ... Similar to previous best
## Run 179 stress 0.1087682 
## Run 180 stress 0.04425405 
## ... Procrustes: rmse 3.132912e-05  max resid 5.618914e-05 
## ... Similar to previous best
## Run 181 stress 0.04486725 
## Run 182 stress 0.04425405 
## ... Procrustes: rmse 2.09726e-05  max resid 3.950006e-05 
## ... Similar to previous best
## Run 183 stress 0.04486727 
## Run 184 stress 0.04425407 
## ... Procrustes: rmse 4.129882e-05  max resid 7.74797e-05 
## ... Similar to previous best
## Run 185 stress 0.04486722 
## Run 186 stress 0.04425405 
## ... New best solution
## ... Procrustes: rmse 7.855647e-06  max resid 1.498364e-05 
## ... Similar to previous best
## Run 187 stress 0.04486724 
## Run 188 stress 0.1090294 
## Run 189 stress 0.04425407 
## ... Procrustes: rmse 5.906104e-05  max resid 0.0001070358 
## ... Similar to previous best
## Run 190 stress 0.04425405 
## ... Procrustes: rmse 7.729967e-06  max resid 1.563929e-05 
## ... Similar to previous best
## Run 191 stress 0.04486724 
## Run 192 stress 0.04486722 
## Run 193 stress 0.04425405 
## ... Procrustes: rmse 4.309502e-06  max resid 8.071979e-06 
## ... Similar to previous best
## Run 194 stress 0.04425406 
## ... Procrustes: rmse 3.286234e-05  max resid 5.939659e-05 
## ... Similar to previous best
## Run 195 stress 0.04425407 
## ... Procrustes: rmse 6.090215e-05  max resid 0.0001122659 
## ... Similar to previous best
## Run 196 stress 0.04425405 
## ... Procrustes: rmse 1.241647e-05  max resid 2.28797e-05 
## ... Similar to previous best
## Run 197 stress 0.04486724 
## Run 198 stress 0.04486722 
## Run 199 stress 0.04425405 
## ... Procrustes: rmse 1.020432e-05  max resid 1.912795e-05 
## ... Similar to previous best
## Run 200 stress 0.04425405 
## ... Procrustes: rmse 1.729547e-05  max resid 3.189697e-05 
## ... Similar to previous best
## Run 201 stress 0.1087681 
## Run 202 stress 0.04425408 
## ... Procrustes: rmse 7.451595e-05  max resid 0.0001374858 
## ... Similar to previous best
## Run 203 stress 0.04486726 
## Run 204 stress 0.04425405 
## ... Procrustes: rmse 2.774184e-05  max resid 5.07694e-05 
## ... Similar to previous best
## Run 205 stress 0.04486722 
## Run 206 stress 0.04425406 
## ... Procrustes: rmse 4.98421e-05  max resid 9.16558e-05 
## ... Similar to previous best
## Run 207 stress 0.04425405 
## ... Procrustes: rmse 1.332872e-05  max resid 2.362427e-05 
## ... Similar to previous best
## Run 208 stress 0.04425406 
## ... Procrustes: rmse 4.935291e-05  max resid 9.146535e-05 
## ... Similar to previous best
## Run 209 stress 0.04486731 
## Run 210 stress 0.04486723 
## Run 211 stress 0.04425405 
## ... Procrustes: rmse 3.673013e-05  max resid 6.793957e-05 
## ... Similar to previous best
## Run 212 stress 0.04486728 
## Run 213 stress 0.04486722 
## Run 214 stress 0.3493334 
## Run 215 stress 0.04486724 
## Run 216 stress 0.04425405 
## ... Procrustes: rmse 1.0756e-05  max resid 1.999748e-05 
## ... Similar to previous best
## Run 217 stress 0.04486726 
## Run 218 stress 0.04425405 
## ... Procrustes: rmse 2.825858e-05  max resid 5.249805e-05 
## ... Similar to previous best
## Run 219 stress 0.04486723 
## Run 220 stress 0.04425407 
## ... Procrustes: rmse 6.430546e-05  max resid 0.0001182361 
## ... Similar to previous best
## Run 221 stress 0.04425406 
## ... Procrustes: rmse 4.18139e-05  max resid 7.526531e-05 
## ... Similar to previous best
## Run 222 stress 0.04425405 
## ... Procrustes: rmse 1.417682e-05  max resid 2.442408e-05 
## ... Similar to previous best
## Run 223 stress 0.1089043 
## Run 224 stress 0.04486726 
## Run 225 stress 0.3578487 
## Run 226 stress 0.04486723 
## Run 227 stress 0.04486723 
## Run 228 stress 0.04486723 
## Run 229 stress 0.04486726 
## Run 230 stress 0.04425405 
## ... Procrustes: rmse 1.13529e-05  max resid 2.081415e-05 
## ... Similar to previous best
## Run 231 stress 0.04425405 
## ... Procrustes: rmse 3.366722e-05  max resid 6.228006e-05 
## ... Similar to previous best
## Run 232 stress 0.04425405 
## ... Procrustes: rmse 4.359077e-05  max resid 8.044622e-05 
## ... Similar to previous best
## Run 233 stress 0.1090296 
## Run 234 stress 0.04425405 
## ... Procrustes: rmse 1.303086e-05  max resid 2.285051e-05 
## ... Similar to previous best
## Run 235 stress 0.04425405 
## ... Procrustes: rmse 1.412696e-05  max resid 2.571322e-05 
## ... Similar to previous best
## Run 236 stress 0.04425407 
## ... Procrustes: rmse 5.094734e-05  max resid 8.872342e-05 
## ... Similar to previous best
## Run 237 stress 0.04425408 
## ... Procrustes: rmse 6.610107e-05  max resid 0.0001189368 
## ... Similar to previous best
## Run 238 stress 0.04425405 
## ... Procrustes: rmse 9.451483e-06  max resid 1.731827e-05 
## ... Similar to previous best
## Run 239 stress 0.04486722 
## Run 240 stress 0.04486723 
## Run 241 stress 0.04486726 
## Run 242 stress 0.04486722 
## Run 243 stress 0.04486724 
## Run 244 stress 0.04486723 
## Run 245 stress 0.04425405 
## ... Procrustes: rmse 7.0899e-06  max resid 1.307967e-05 
## ... Similar to previous best
## Run 246 stress 0.04425407 
## ... Procrustes: rmse 6.287958e-05  max resid 0.0001162963 
## ... Similar to previous best
## Run 247 stress 0.04486726 
## Run 248 stress 0.04425407 
## ... Procrustes: rmse 5.818568e-05  max resid 0.0001067966 
## ... Similar to previous best
## Run 249 stress 0.04486722 
## Run 250 stress 0.3578487 
## Run 251 stress 0.108768 
## Run 252 stress 0.04425407 
## ... Procrustes: rmse 6.627174e-05  max resid 0.0001217964 
## ... Similar to previous best
## Run 253 stress 0.04425408 
## ... Procrustes: rmse 6.753225e-05  max resid 0.0001210552 
## ... Similar to previous best
## Run 254 stress 0.04425405 
## ... Procrustes: rmse 1.046697e-05  max resid 1.916492e-05 
## ... Similar to previous best
## Run 255 stress 0.04486723 
## Run 256 stress 0.04486728 
## Run 257 stress 0.04425406 
## ... Procrustes: rmse 5.542426e-05  max resid 0.0001023804 
## ... Similar to previous best
## Run 258 stress 0.04425405 
## ... Procrustes: rmse 3.437589e-05  max resid 6.379752e-05 
## ... Similar to previous best
## Run 259 stress 0.04425408 
## ... Procrustes: rmse 7.129093e-05  max resid 0.000129758 
## ... Similar to previous best
## Run 260 stress 0.04425405 
## ... Procrustes: rmse 1.432476e-05  max resid 2.604735e-05 
## ... Similar to previous best
## Run 261 stress 0.04425405 
## ... Procrustes: rmse 1.042287e-05  max resid 1.90572e-05 
## ... Similar to previous best
## Run 262 stress 0.04486722 
## Run 263 stress 0.04425406 
## ... Procrustes: rmse 4.389611e-05  max resid 8.03288e-05 
## ... Similar to previous best
## Run 264 stress 0.04425406 
## ... Procrustes: rmse 5.171538e-05  max resid 9.542524e-05 
## ... Similar to previous best
## Run 265 stress 0.04486728 
## Run 266 stress 0.04425406 
## ... Procrustes: rmse 4.643564e-05  max resid 8.419538e-05 
## ... Similar to previous best
## Run 267 stress 0.04425408 
## ... Procrustes: rmse 7.43606e-05  max resid 0.0001378438 
## ... Similar to previous best
## Run 268 stress 0.04486725 
## Run 269 stress 0.04425406 
## ... Procrustes: rmse 1.002902e-05  max resid 2.267663e-05 
## ... Similar to previous best
## Run 270 stress 0.04425405 
## ... Procrustes: rmse 7.098068e-06  max resid 1.319628e-05 
## ... Similar to previous best
## Run 271 stress 0.04425405 
## ... Procrustes: rmse 1.329539e-05  max resid 2.413082e-05 
## ... Similar to previous best
## Run 272 stress 0.04486723 
## Run 273 stress 0.04486722 
## Run 274 stress 0.108768 
## Run 275 stress 0.04486724 
## Run 276 stress 0.04425405 
## ... Procrustes: rmse 1.058589e-06  max resid 1.87197e-06 
## ... Similar to previous best
## Run 277 stress 0.04486726 
## Run 278 stress 0.04486727 
## Run 279 stress 0.1090295 
## Run 280 stress 0.1087681 
## Run 281 stress 0.04486722 
## Run 282 stress 0.04486724 
## Run 283 stress 0.1089046 
## Run 284 stress 0.04425405 
## ... Procrustes: rmse 4.142498e-06  max resid 7.683514e-06 
## ... Similar to previous best
## Run 285 stress 0.04425405 
## ... Procrustes: rmse 1.113497e-05  max resid 2.044116e-05 
## ... Similar to previous best
## Run 286 stress 0.04425408 
## ... Procrustes: rmse 7.376089e-05  max resid 0.0001366727 
## ... Similar to previous best
## Run 287 stress 0.04425405 
## ... Procrustes: rmse 2.81114e-05  max resid 5.197356e-05 
## ... Similar to previous best
## Run 288 stress 0.04425406 
## ... Procrustes: rmse 4.348812e-05  max resid 8.062285e-05 
## ... Similar to previous best
## Run 289 stress 0.0448673 
## Run 290 stress 0.04425405 
## ... Procrustes: rmse 1.630614e-05  max resid 3.028082e-05 
## ... Similar to previous best
## Run 291 stress 0.1090294 
## Run 292 stress 0.04425406 
## ... Procrustes: rmse 1.328448e-05  max resid 3.105853e-05 
## ... Similar to previous best
## Run 293 stress 0.04425405 
## ... Procrustes: rmse 2.569541e-05  max resid 4.691181e-05 
## ... Similar to previous best
## Run 294 stress 0.04486725 
## Run 295 stress 0.04486724 
## Run 296 stress 0.04486726 
## Run 297 stress 0.04425405 
## ... Procrustes: rmse 4.45715e-06  max resid 8.307965e-06 
## ... Similar to previous best
## Run 298 stress 0.04425409 
## ... Procrustes: rmse 7.823123e-05  max resid 0.0001434657 
## ... Similar to previous best
## Run 299 stress 0.04425405 
## ... Procrustes: rmse 1.468117e-05  max resid 2.759032e-05 
## ... Similar to previous best
## Run 300 stress 0.04486723 
## Run 301 stress 0.04486726 
## Run 302 stress 0.04486726 
## Run 303 stress 0.04486723 
## Run 304 stress 0.04486722 
## Run 305 stress 0.04486722 
## Run 306 stress 0.04486722 
## Run 307 stress 0.04486727 
## Run 308 stress 0.04425405 
## ... Procrustes: rmse 3.300207e-05  max resid 6.123289e-05 
## ... Similar to previous best
## Run 309 stress 0.04425405 
## ... Procrustes: rmse 1.120366e-05  max resid 2.047557e-05 
## ... Similar to previous best
## Run 310 stress 0.04486724 
## Run 311 stress 0.04486725 
## Run 312 stress 0.108768 
## Run 313 stress 0.04425405 
## ... Procrustes: rmse 6.92539e-06  max resid 1.291106e-05 
## ... Similar to previous best
## Run 314 stress 0.04425405 
## ... Procrustes: rmse 2.650509e-05  max resid 4.913884e-05 
## ... Similar to previous best
## Run 315 stress 0.04425405 
## ... New best solution
## ... Procrustes: rmse 1.108195e-06  max resid 1.884632e-06 
## ... Similar to previous best
## Run 316 stress 0.04425406 
## ... Procrustes: rmse 4.584346e-05  max resid 8.444454e-05 
## ... Similar to previous best
## Run 317 stress 0.04425405 
## ... Procrustes: rmse 1.455097e-06  max resid 2.531706e-06 
## ... Similar to previous best
## Run 318 stress 0.04486725 
## Run 319 stress 0.04425405 
## ... Procrustes: rmse 2.003492e-05  max resid 3.679811e-05 
## ... Similar to previous best
## Run 320 stress 0.04425405 
## ... Procrustes: rmse 3.16423e-05  max resid 5.871174e-05 
## ... Similar to previous best
## Run 321 stress 0.04425405 
## ... Procrustes: rmse 9.451985e-06  max resid 1.772413e-05 
## ... Similar to previous best
## Run 322 stress 0.04425405 
## ... Procrustes: rmse 8.231102e-06  max resid 1.437681e-05 
## ... Similar to previous best
## Run 323 stress 0.04425405 
## ... Procrustes: rmse 2.224753e-05  max resid 4.143915e-05 
## ... Similar to previous best
## Run 324 stress 0.1089043 
## Run 325 stress 0.1094279 
## Run 326 stress 0.0448673 
## Run 327 stress 0.04486722 
## Run 328 stress 0.04425405 
## ... Procrustes: rmse 5.20652e-06  max resid 9.158349e-06 
## ... Similar to previous best
## Run 329 stress 0.04486722 
## Run 330 stress 0.04425406 
## ... Procrustes: rmse 3.282047e-05  max resid 6.012123e-05 
## ... Similar to previous best
## Run 331 stress 0.04425405 
## ... Procrustes: rmse 3.667183e-05  max resid 6.72301e-05 
## ... Similar to previous best
## Run 332 stress 0.04486723 
## Run 333 stress 0.04425405 
## ... Procrustes: rmse 2.300921e-05  max resid 4.084365e-05 
## ... Similar to previous best
## Run 334 stress 0.04425405 
## ... Procrustes: rmse 8.103749e-06  max resid 1.456739e-05 
## ... Similar to previous best
## Run 335 stress 0.04425406 
## ... Procrustes: rmse 5.476356e-05  max resid 0.0001015981 
## ... Similar to previous best
## Run 336 stress 0.04486724 
## Run 337 stress 0.04425408 
## ... Procrustes: rmse 7.72881e-05  max resid 0.0001419742 
## ... Similar to previous best
## Run 338 stress 0.04425405 
## ... Procrustes: rmse 2.802642e-05  max resid 5.15634e-05 
## ... Similar to previous best
## Run 339 stress 0.04425405 
## ... Procrustes: rmse 2.658461e-05  max resid 4.882594e-05 
## ... Similar to previous best
## Run 340 stress 0.04486722 
## Run 341 stress 0.04425405 
## ... Procrustes: rmse 6.50295e-06  max resid 9.664837e-06 
## ... Similar to previous best
## Run 342 stress 0.04486722 
## Run 343 stress 0.04425405 
## ... Procrustes: rmse 6.25548e-06  max resid 1.205429e-05 
## ... Similar to previous best
## Run 344 stress 0.04425405 
## ... Procrustes: rmse 1.175315e-05  max resid 2.126082e-05 
## ... Similar to previous best
## Run 345 stress 0.04486728 
## Run 346 stress 0.04486726 
## Run 347 stress 0.04486723 
## Run 348 stress 0.04425406 
## ... Procrustes: rmse 5.057334e-05  max resid 9.332783e-05 
## ... Similar to previous best
## Run 349 stress 0.04486722 
## Run 350 stress 0.04425406 
## ... Procrustes: rmse 3.01027e-05  max resid 5.484181e-05 
## ... Similar to previous best
## Run 351 stress 0.1087681 
## Run 352 stress 0.04425407 
## ... Procrustes: rmse 6.171895e-05  max resid 0.0001141029 
## ... Similar to previous best
## Run 353 stress 0.04486726 
## Run 354 stress 0.04425405 
## ... Procrustes: rmse 2.27576e-05  max resid 4.159924e-05 
## ... Similar to previous best
## Run 355 stress 0.04486726 
## Run 356 stress 0.04486722 
## Run 357 stress 0.04425405 
## ... Procrustes: rmse 1.951796e-06  max resid 4.212895e-06 
## ... Similar to previous best
## Run 358 stress 0.1087681 
## Run 359 stress 0.04486728 
## Run 360 stress 0.04425405 
## ... Procrustes: rmse 8.525864e-06  max resid 1.501581e-05 
## ... Similar to previous best
## Run 361 stress 0.04486723 
## Run 362 stress 0.04425405 
## ... Procrustes: rmse 1.479017e-05  max resid 2.648529e-05 
## ... Similar to previous best
## Run 363 stress 0.04486727 
## Run 364 stress 0.1087681 
## Run 365 stress 0.04486722 
## Run 366 stress 0.04486725 
## Run 367 stress 0.04425405 
## ... Procrustes: rmse 1.592472e-05  max resid 2.751435e-05 
## ... Similar to previous best
## Run 368 stress 0.04425407 
## ... Procrustes: rmse 5.513759e-05  max resid 9.95941e-05 
## ... Similar to previous best
## Run 369 stress 0.04486728 
## Run 370 stress 0.04486723 
## Run 371 stress 0.04425405 
## ... Procrustes: rmse 1.378389e-05  max resid 2.566322e-05 
## ... Similar to previous best
## Run 372 stress 0.04425407 
## ... Procrustes: rmse 5.905925e-05  max resid 0.0001090885 
## ... Similar to previous best
## Run 373 stress 0.04425405 
## ... Procrustes: rmse 9.662824e-06  max resid 1.758446e-05 
## ... Similar to previous best
## Run 374 stress 0.04425406 
## ... Procrustes: rmse 3.440358e-05  max resid 6.37967e-05 
## ... Similar to previous best
## Run 375 stress 0.04425405 
## ... Procrustes: rmse 3.188764e-05  max resid 5.874134e-05 
## ... Similar to previous best
## Run 376 stress 0.04486728 
## Run 377 stress 0.04486722 
## Run 378 stress 0.04486722 
## Run 379 stress 0.04486725 
## Run 380 stress 0.04425407 
## ... Procrustes: rmse 6.158999e-05  max resid 0.0001139459 
## ... Similar to previous best
## Run 381 stress 0.1090295 
## Run 382 stress 0.04425405 
## ... Procrustes: rmse 1.114303e-05  max resid 1.964132e-05 
## ... Similar to previous best
## Run 383 stress 0.04486724 
## Run 384 stress 0.04425405 
## ... Procrustes: rmse 1.090189e-05  max resid 1.974277e-05 
## ... Similar to previous best
## Run 385 stress 0.0442541 
## ... Procrustes: rmse 7.340369e-05  max resid 0.0001305362 
## ... Similar to previous best
## Run 386 stress 0.04425405 
## ... Procrustes: rmse 2.712362e-05  max resid 4.963198e-05 
## ... Similar to previous best
## Run 387 stress 0.1090294 
## Run 388 stress 0.04425405 
## ... Procrustes: rmse 1.785334e-05  max resid 3.266745e-05 
## ... Similar to previous best
## Run 389 stress 0.04486727 
## Run 390 stress 0.04425405 
## ... Procrustes: rmse 2.167211e-05  max resid 3.943231e-05 
## ... Similar to previous best
## Run 391 stress 0.0448673 
## Run 392 stress 0.04425405 
## ... Procrustes: rmse 7.169784e-06  max resid 1.276963e-05 
## ... Similar to previous best
## Run 393 stress 0.04425408 
## ... Procrustes: rmse 7.606079e-05  max resid 0.0001402928 
## ... Similar to previous best
## Run 394 stress 0.04486722 
## Run 395 stress 0.04425406 
## ... Procrustes: rmse 4.385558e-05  max resid 8.081399e-05 
## ... Similar to previous best
## Run 396 stress 0.04425405 
## ... Procrustes: rmse 1.274819e-05  max resid 2.199528e-05 
## ... Similar to previous best
## Run 397 stress 0.04486722 
## Run 398 stress 0.04486724 
## Run 399 stress 0.04486722 
## Run 400 stress 0.04425408 
## ... Procrustes: rmse 6.806202e-05  max resid 0.0001240466 
## ... Similar to previous best
## Run 401 stress 0.04486728 
## Run 402 stress 0.04486727 
## Run 403 stress 0.04425407 
## ... Procrustes: rmse 6.871861e-05  max resid 0.0001267942 
## ... Similar to previous best
## Run 404 stress 0.04425405 
## ... Procrustes: rmse 1.138462e-05  max resid 2.122005e-05 
## ... Similar to previous best
## Run 405 stress 0.04425405 
## ... Procrustes: rmse 1.100223e-05  max resid 1.998951e-05 
## ... Similar to previous best
## Run 406 stress 0.04425406 
## ... Procrustes: rmse 4.492808e-05  max resid 8.230376e-05 
## ... Similar to previous best
## Run 407 stress 0.04486725 
## Run 408 stress 0.04425406 
## ... Procrustes: rmse 5.025908e-05  max resid 9.196266e-05 
## ... Similar to previous best
## Run 409 stress 0.1089043 
## Run 410 stress 0.04425405 
## ... Procrustes: rmse 7.264426e-06  max resid 1.266534e-05 
## ... Similar to previous best
## Run 411 stress 0.0442541 
## ... Procrustes: rmse 4.278099e-05  max resid 7.927824e-05 
## ... Similar to previous best
## Run 412 stress 0.04425405 
## ... Procrustes: rmse 1.20951e-05  max resid 2.133336e-05 
## ... Similar to previous best
## Run 413 stress 0.04425405 
## ... Procrustes: rmse 2.721503e-05  max resid 4.96612e-05 
## ... Similar to previous best
## Run 414 stress 0.1090295 
## Run 415 stress 0.04425407 
## ... Procrustes: rmse 6.020679e-05  max resid 0.0001110118 
## ... Similar to previous best
## Run 416 stress 0.04486722 
## Run 417 stress 0.04425405 
## ... Procrustes: rmse 1.831585e-05  max resid 3.408367e-05 
## ... Similar to previous best
## Run 418 stress 0.04425405 
## ... Procrustes: rmse 1.869119e-05  max resid 3.475156e-05 
## ... Similar to previous best
## Run 419 stress 0.04425405 
## ... Procrustes: rmse 2.506436e-05  max resid 4.529826e-05 
## ... Similar to previous best
## Run 420 stress 0.04486726 
## Run 421 stress 0.04425406 
## ... Procrustes: rmse 4.104556e-05  max resid 7.493166e-05 
## ... Similar to previous best
## Run 422 stress 0.04486724 
## Run 423 stress 0.04425407 
## ... Procrustes: rmse 5.941812e-05  max resid 0.0001098186 
## ... Similar to previous best
## Run 424 stress 0.04425407 
## ... Procrustes: rmse 6.588204e-05  max resid 0.0001216024 
## ... Similar to previous best
## Run 425 stress 0.04425409 
## ... Procrustes: rmse 7.614492e-05  max resid 0.000137046 
## ... Similar to previous best
## Run 426 stress 0.04486728 
## Run 427 stress 0.04425405 
## ... Procrustes: rmse 2.028642e-05  max resid 3.708886e-05 
## ... Similar to previous best
## Run 428 stress 0.04486724 
## Run 429 stress 0.04425405 
## ... Procrustes: rmse 1.051327e-05  max resid 2.300004e-05 
## ... Similar to previous best
## Run 430 stress 0.04425409 
## ... Procrustes: rmse 7.447363e-05  max resid 0.0001379781 
## ... Similar to previous best
## Run 431 stress 0.04486725 
## Run 432 stress 0.04425405 
## ... Procrustes: rmse 3.295903e-05  max resid 6.036067e-05 
## ... Similar to previous best
## Run 433 stress 0.04425405 
## ... Procrustes: rmse 7.589185e-06  max resid 1.423796e-05 
## ... Similar to previous best
## Run 434 stress 0.04486723 
## Run 435 stress 0.108768 
## Run 436 stress 0.04486729 
## Run 437 stress 0.04486723 
## Run 438 stress 0.04425405 
## ... Procrustes: rmse 1.931342e-05  max resid 3.519204e-05 
## ... Similar to previous best
## Run 439 stress 0.04486725 
## Run 440 stress 0.04425406 
## ... Procrustes: rmse 4.710605e-05  max resid 8.669734e-05 
## ... Similar to previous best
## Run 441 stress 0.04425405 
## ... Procrustes: rmse 1.92949e-05  max resid 3.533044e-05 
## ... Similar to previous best
## Run 442 stress 0.04425405 
## ... Procrustes: rmse 2.560222e-05  max resid 4.74106e-05 
## ... Similar to previous best
## Run 443 stress 0.04425405 
## ... Procrustes: rmse 1.441642e-05  max resid 2.648463e-05 
## ... Similar to previous best
## Run 444 stress 0.04425405 
## ... Procrustes: rmse 1.949975e-05  max resid 3.567024e-05 
## ... Similar to previous best
## Run 445 stress 0.04425405 
## ... Procrustes: rmse 3.35774e-05  max resid 6.167745e-05 
## ... Similar to previous best
## Run 446 stress 0.04425405 
## ... Procrustes: rmse 3.668143e-05  max resid 6.799017e-05 
## ... Similar to previous best
## Run 447 stress 0.04486722 
## Run 448 stress 0.04425405 
## ... Procrustes: rmse 1.479877e-05  max resid 2.710564e-05 
## ... Similar to previous best
## Run 449 stress 0.04425405 
## ... Procrustes: rmse 6.411536e-06  max resid 1.466333e-05 
## ... Similar to previous best
## Run 450 stress 0.04486725 
## Run 451 stress 0.04486724 
## Run 452 stress 0.04425405 
## ... Procrustes: rmse 8.891506e-06  max resid 1.551537e-05 
## ... Similar to previous best
## Run 453 stress 0.1087681 
## Run 454 stress 0.04486725 
## Run 455 stress 0.04486723 
## Run 456 stress 0.04425405 
## ... Procrustes: rmse 2.910872e-05  max resid 5.334613e-05 
## ... Similar to previous best
## Run 457 stress 0.04425405 
## ... Procrustes: rmse 1.991264e-05  max resid 3.652436e-05 
## ... Similar to previous best
## Run 458 stress 0.04425407 
## ... Procrustes: rmse 6.46196e-05  max resid 0.0001194108 
## ... Similar to previous best
## Run 459 stress 0.1089043 
## Run 460 stress 0.04425406 
## ... Procrustes: rmse 1.750455e-05  max resid 3.46383e-05 
## ... Similar to previous best
## Run 461 stress 0.04486722 
## Run 462 stress 0.1087679 
## Run 463 stress 0.04486722 
## Run 464 stress 0.04486723 
## Run 465 stress 0.04486724 
## Run 466 stress 0.04425405 
## ... Procrustes: rmse 7.930491e-06  max resid 1.444665e-05 
## ... Similar to previous best
## Run 467 stress 0.04486731 
## Run 468 stress 0.04425406 
## ... Procrustes: rmse 4.40078e-05  max resid 7.800568e-05 
## ... Similar to previous best
## Run 469 stress 0.04425405 
## ... Procrustes: rmse 1.638843e-05  max resid 3.115449e-05 
## ... Similar to previous best
## Run 470 stress 0.04486728 
## Run 471 stress 0.04425405 
## ... Procrustes: rmse 7.031943e-06  max resid 1.195914e-05 
## ... Similar to previous best
## Run 472 stress 0.04486722 
## Run 473 stress 0.04486727 
## Run 474 stress 0.04486723 
## Run 475 stress 0.04486723 
## Run 476 stress 0.04425409 
## ... Procrustes: rmse 9.102018e-05  max resid 0.0001686218 
## ... Similar to previous best
## Run 477 stress 0.04486726 
## Run 478 stress 0.04425405 
## ... Procrustes: rmse 3.200494e-05  max resid 5.898352e-05 
## ... Similar to previous best
## Run 479 stress 0.332865 
## Run 480 stress 0.04425405 
## ... Procrustes: rmse 1.889239e-05  max resid 3.502958e-05 
## ... Similar to previous best
## Run 481 stress 0.04425405 
## ... Procrustes: rmse 1.9837e-05  max resid 3.636325e-05 
## ... Similar to previous best
## Run 482 stress 0.04425405 
## ... Procrustes: rmse 2.916882e-05  max resid 5.361598e-05 
## ... Similar to previous best
## Run 483 stress 0.04425405 
## ... Procrustes: rmse 3.166388e-05  max resid 5.694425e-05 
## ... Similar to previous best
## Run 484 stress 0.04486724 
## Run 485 stress 0.04425406 
## ... Procrustes: rmse 4.236751e-05  max resid 7.86292e-05 
## ... Similar to previous best
## Run 486 stress 0.04486724 
## Run 487 stress 0.04425405 
## ... Procrustes: rmse 1.433353e-05  max resid 2.581299e-05 
## ... Similar to previous best
## Run 488 stress 0.04486723 
## Run 489 stress 0.04486723 
## Run 490 stress 0.04486724 
## Run 491 stress 0.04425406 
## ... Procrustes: rmse 5.162235e-05  max resid 9.492545e-05 
## ... Similar to previous best
## Run 492 stress 0.04425405 
## ... Procrustes: rmse 2.044615e-05  max resid 3.810877e-05 
## ... Similar to previous best
## Run 493 stress 0.04425405 
## ... Procrustes: rmse 2.48735e-05  max resid 4.570217e-05 
## ... Similar to previous best
## Run 494 stress 0.04425405 
## ... Procrustes: rmse 2.899458e-05  max resid 5.326569e-05 
## ... Similar to previous best
## Run 495 stress 0.04486725 
## Run 496 stress 0.04486724 
## Run 497 stress 0.04425405 
## ... Procrustes: rmse 2.477278e-05  max resid 4.579775e-05 
## ... Similar to previous best
## Run 498 stress 0.04486722 
## Run 499 stress 0.04425405 
## ... Procrustes: rmse 1.918042e-05  max resid 3.503316e-05 
## ... Similar to previous best
## Run 500 stress 0.04425405 
## ... Procrustes: rmse 1.670288e-05  max resid 3.064202e-05 
## ... Similar to previous best
## *** Best solution repeated 102 times
# Stratified lakes and ocean sites
fdso_NMDS <- metaMDS(fdso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.04040732 
## Run 1 stress 0.0475527 
## Run 2 stress 0.04781521 
## Run 3 stress 0.04781521 
## Run 4 stress 0.04755258 
## Run 5 stress 0.2811298 
## Run 6 stress 0.04755253 
## Run 7 stress 0.04870928 
## Run 8 stress 0.04870928 
## Run 9 stress 0.04040732 
## ... Procrustes: rmse 2.559105e-05  max resid 5.236395e-05 
## ... Similar to previous best
## Run 10 stress 0.04781524 
## Run 11 stress 0.04870929 
## Run 12 stress 0.04472623 
## Run 13 stress 0.04870931 
## Run 14 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 8.621248e-06  max resid 1.75937e-05 
## ... Similar to previous best
## Run 15 stress 0.04040732 
## ... Procrustes: rmse 6.347371e-06  max resid 1.513611e-05 
## ... Similar to previous best
## Run 16 stress 0.04781521 
## Run 17 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 4.156234e-06  max resid 6.908181e-06 
## ... Similar to previous best
## Run 18 stress 0.04755254 
## Run 19 stress 0.05017318 
## Run 20 stress 0.04870928 
## Run 21 stress 0.04870931 
## Run 22 stress 0.04781521 
## Run 23 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 6.725894e-06  max resid 1.385041e-05 
## ... Similar to previous best
## Run 24 stress 0.04662836 
## Run 25 stress 0.04040733 
## ... Procrustes: rmse 3.851494e-05  max resid 7.186952e-05 
## ... Similar to previous best
## Run 26 stress 0.04870931 
## Run 27 stress 0.04871639 
## Run 28 stress 0.04755259 
## Run 29 stress 0.04471762 
## Run 30 stress 0.04781521 
## Run 31 stress 0.04662839 
## Run 32 stress 0.04755265 
## Run 33 stress 0.04040733 
## ... Procrustes: rmse 2.288621e-05  max resid 4.25862e-05 
## ... Similar to previous best
## Run 34 stress 0.05017316 
## Run 35 stress 0.04781521 
## Run 36 stress 0.05017316 
## Run 37 stress 0.2666111 
## Run 38 stress 0.05017316 
## Run 39 stress 0.04663052 
## Run 40 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 5.293068e-06  max resid 9.744446e-06 
## ... Similar to previous best
## Run 41 stress 0.04040732 
## ... Procrustes: rmse 6.760298e-06  max resid 1.512237e-05 
## ... Similar to previous best
## Run 42 stress 0.05017328 
## Run 43 stress 0.04472623 
## Run 44 stress 0.04040732 
## ... Procrustes: rmse 6.769154e-06  max resid 1.187928e-05 
## ... Similar to previous best
## Run 45 stress 0.04781521 
## Run 46 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 2.386028e-06  max resid 6.907018e-06 
## ... Similar to previous best
## Run 47 stress 0.04870928 
## Run 48 stress 0.04870928 
## Run 49 stress 0.04662835 
## Run 50 stress 0.04040732 
## ... Procrustes: rmse 4.216391e-06  max resid 1.270466e-05 
## ... Similar to previous best
## Run 51 stress 0.04662835 
## Run 52 stress 0.05017323 
## Run 53 stress 0.04870929 
## Run 54 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 5.69211e-06  max resid 1.113538e-05 
## ... Similar to previous best
## Run 55 stress 0.04040732 
## ... Procrustes: rmse 3.478777e-06  max resid 8.741177e-06 
## ... Similar to previous best
## Run 56 stress 0.05017317 
## Run 57 stress 0.04040732 
## ... Procrustes: rmse 1.474272e-05  max resid 2.614626e-05 
## ... Similar to previous best
## Run 58 stress 0.05017316 
## Run 59 stress 0.05017319 
## Run 60 stress 0.04755265 
## Run 61 stress 0.05017321 
## Run 62 stress 0.05353507 
## Run 63 stress 0.04781521 
## Run 64 stress 0.04472623 
## Run 65 stress 0.04040732 
## ... Procrustes: rmse 8.33456e-06  max resid 1.67108e-05 
## ... Similar to previous best
## Run 66 stress 0.04662845 
## Run 67 stress 0.0487093 
## Run 68 stress 0.04040732 
## ... Procrustes: rmse 6.791431e-06  max resid 1.504265e-05 
## ... Similar to previous best
## Run 69 stress 0.04472624 
## Run 70 stress 0.04040732 
## ... Procrustes: rmse 4.49188e-06  max resid 8.610318e-06 
## ... Similar to previous best
## Run 71 stress 0.04040732 
## ... Procrustes: rmse 8.320751e-06  max resid 1.707413e-05 
## ... Similar to previous best
## Run 72 stress 0.04755264 
## Run 73 stress 0.04870931 
## Run 74 stress 0.04040732 
## ... Procrustes: rmse 6.122042e-06  max resid 1.146254e-05 
## ... Similar to previous best
## Run 75 stress 0.04781521 
## Run 76 stress 0.04755255 
## Run 77 stress 0.05017319 
## Run 78 stress 0.04663056 
## Run 79 stress 0.05353508 
## Run 80 stress 0.04870929 
## Run 81 stress 0.04040732 
## ... Procrustes: rmse 6.512707e-06  max resid 1.395794e-05 
## ... Similar to previous best
## Run 82 stress 0.04040732 
## ... Procrustes: rmse 6.600175e-06  max resid 1.160349e-05 
## ... Similar to previous best
## Run 83 stress 0.04040732 
## ... Procrustes: rmse 2.201906e-05  max resid 4.375736e-05 
## ... Similar to previous best
## Run 84 stress 0.04662836 
## Run 85 stress 0.04472623 
## Run 86 stress 0.04040732 
## ... Procrustes: rmse 9.212499e-06  max resid 1.66041e-05 
## ... Similar to previous best
## Run 87 stress 0.04755266 
## Run 88 stress 0.04040732 
## ... Procrustes: rmse 3.744583e-05  max resid 6.674025e-05 
## ... Similar to previous best
## Run 89 stress 0.04781521 
## Run 90 stress 0.0447148 
## Run 91 stress 0.05017324 
## Run 92 stress 0.04040732 
## ... Procrustes: rmse 9.554731e-06  max resid 2.133194e-05 
## ... Similar to previous best
## Run 93 stress 0.04040732 
## ... Procrustes: rmse 4.947743e-06  max resid 9.255001e-06 
## ... Similar to previous best
## Run 94 stress 0.05017317 
## Run 95 stress 0.04662835 
## Run 96 stress 0.04755256 
## Run 97 stress 0.05017321 
## Run 98 stress 0.04040732 
## ... Procrustes: rmse 5.928459e-06  max resid 1.135619e-05 
## ... Similar to previous best
## Run 99 stress 0.04755253 
## Run 100 stress 0.04040732 
## ... Procrustes: rmse 1.265209e-05  max resid 2.759514e-05 
## ... Similar to previous best
## Run 101 stress 0.04781521 
## Run 102 stress 0.04040732 
## ... Procrustes: rmse 1.876414e-05  max resid 3.365275e-05 
## ... Similar to previous best
## Run 103 stress 0.04040732 
## ... Procrustes: rmse 3.532723e-05  max resid 6.38212e-05 
## ... Similar to previous best
## Run 104 stress 0.2551952 
## Run 105 stress 0.04472623 
## Run 106 stress 0.05353513 
## Run 107 stress 0.04040732 
## ... Procrustes: rmse 8.436863e-06  max resid 1.569456e-05 
## ... Similar to previous best
## Run 108 stress 0.249051 
## Run 109 stress 0.04781521 
## Run 110 stress 0.04755258 
## Run 111 stress 0.04040732 
## ... Procrustes: rmse 2.496967e-05  max resid 4.421477e-05 
## ... Similar to previous best
## Run 112 stress 0.04662835 
## Run 113 stress 0.04755256 
## Run 114 stress 0.04870931 
## Run 115 stress 0.04040732 
## ... Procrustes: rmse 7.967507e-06  max resid 1.419512e-05 
## ... Similar to previous best
## Run 116 stress 0.04781522 
## Run 117 stress 0.04781521 
## Run 118 stress 0.04040732 
## ... Procrustes: rmse 8.699119e-06  max resid 1.530135e-05 
## ... Similar to previous best
## Run 119 stress 0.04781521 
## Run 120 stress 0.04870932 
## Run 121 stress 0.04040732 
## ... Procrustes: rmse 1.066532e-05  max resid 2.14797e-05 
## ... Similar to previous best
## Run 122 stress 0.04040734 
## ... Procrustes: rmse 6.291959e-05  max resid 0.000111874 
## ... Similar to previous best
## Run 123 stress 0.04781521 
## Run 124 stress 0.05353509 
## Run 125 stress 0.0487093 
## Run 126 stress 0.04040732 
## ... Procrustes: rmse 1.117954e-05  max resid 2.014138e-05 
## ... Similar to previous best
## Run 127 stress 0.04040732 
## ... Procrustes: rmse 6.643877e-06  max resid 1.491215e-05 
## ... Similar to previous best
## Run 128 stress 0.04663051 
## Run 129 stress 0.05017316 
## Run 130 stress 0.04870933 
## Run 131 stress 0.04870931 
## Run 132 stress 0.04040732 
## ... Procrustes: rmse 6.297678e-06  max resid 1.250546e-05 
## ... Similar to previous best
## Run 133 stress 0.05017315 
## Run 134 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 3.96799e-06  max resid 6.130009e-06 
## ... Similar to previous best
## Run 135 stress 0.04040732 
## ... Procrustes: rmse 7.71963e-06  max resid 1.407907e-05 
## ... Similar to previous best
## Run 136 stress 0.04870928 
## Run 137 stress 0.04472623 
## Run 138 stress 0.04662835 
## Run 139 stress 0.05017318 
## Run 140 stress 0.04040732 
## ... Procrustes: rmse 3.839716e-05  max resid 6.826293e-05 
## ... Similar to previous best
## Run 141 stress 0.2815751 
## Run 142 stress 0.04040732 
## ... Procrustes: rmse 8.945609e-06  max resid 1.663592e-05 
## ... Similar to previous best
## Run 143 stress 0.04755256 
## Run 144 stress 0.05017315 
## Run 145 stress 0.05353518 
## Run 146 stress 0.0475527 
## Run 147 stress 0.04755258 
## Run 148 stress 0.04472623 
## Run 149 stress 0.04040732 
## ... Procrustes: rmse 2.159182e-05  max resid 4.132551e-05 
## ... Similar to previous best
## Run 150 stress 0.04870931 
## Run 151 stress 0.05017316 
## Run 152 stress 0.04472623 
## Run 153 stress 0.04040732 
## ... Procrustes: rmse 8.555714e-06  max resid 1.624224e-05 
## ... Similar to previous best
## Run 154 stress 0.04870929 
## Run 155 stress 0.04040732 
## ... Procrustes: rmse 1.400406e-05  max resid 2.506809e-05 
## ... Similar to previous best
## Run 156 stress 0.04662837 
## Run 157 stress 0.04662836 
## Run 158 stress 0.04871638 
## Run 159 stress 0.04870929 
## Run 160 stress 0.04040732 
## ... Procrustes: rmse 1.013122e-05  max resid 1.862961e-05 
## ... Similar to previous best
## Run 161 stress 0.04040732 
## ... Procrustes: rmse 7.226951e-06  max resid 1.277983e-05 
## ... Similar to previous best
## Run 162 stress 0.04662836 
## Run 163 stress 0.04472623 
## Run 164 stress 0.04662841 
## Run 165 stress 0.04040733 
## ... Procrustes: rmse 3.420934e-05  max resid 6.391865e-05 
## ... Similar to previous best
## Run 166 stress 0.04870929 
## Run 167 stress 0.05353514 
## Run 168 stress 0.04781521 
## Run 169 stress 0.2820455 
## Run 170 stress 0.0475526 
## Run 171 stress 0.3578488 
## Run 172 stress 0.0447148 
## Run 173 stress 0.04870929 
## Run 174 stress 0.04781521 
## Run 175 stress 0.04040732 
## ... Procrustes: rmse 1.555826e-05  max resid 3.180188e-05 
## ... Similar to previous best
## Run 176 stress 0.05017316 
## Run 177 stress 0.04870932 
## Run 178 stress 0.04870929 
## Run 179 stress 0.04040732 
## ... Procrustes: rmse 3.213715e-05  max resid 5.7346e-05 
## ... Similar to previous best
## Run 180 stress 0.04040732 
## ... Procrustes: rmse 1.348651e-05  max resid 2.480711e-05 
## ... Similar to previous best
## Run 181 stress 0.04662836 
## Run 182 stress 0.05017317 
## Run 183 stress 0.05353516 
## Run 184 stress 0.04870933 
## Run 185 stress 0.04663048 
## Run 186 stress 0.04040732 
## ... Procrustes: rmse 9.284735e-06  max resid 1.884696e-05 
## ... Similar to previous best
## Run 187 stress 0.04755269 
## Run 188 stress 0.04040732 
## ... Procrustes: rmse 1.712651e-05  max resid 3.146713e-05 
## ... Similar to previous best
## Run 189 stress 0.04040732 
## ... Procrustes: rmse 3.580631e-06  max resid 7.826716e-06 
## ... Similar to previous best
## Run 190 stress 0.04040732 
## ... Procrustes: rmse 1.31192e-05  max resid 2.52701e-05 
## ... Similar to previous best
## Run 191 stress 0.04040732 
## ... Procrustes: rmse 4.937043e-06  max resid 9.483441e-06 
## ... Similar to previous best
## Run 192 stress 0.04781521 
## Run 193 stress 0.04040732 
## ... Procrustes: rmse 6.526138e-06  max resid 1.575966e-05 
## ... Similar to previous best
## Run 194 stress 0.04040732 
## ... Procrustes: rmse 1.184438e-05  max resid 2.114398e-05 
## ... Similar to previous best
## Run 195 stress 0.05017316 
## Run 196 stress 0.05017316 
## Run 197 stress 0.05017317 
## Run 198 stress 0.04040732 
## ... Procrustes: rmse 1.384573e-05  max resid 2.577554e-05 
## ... Similar to previous best
## Run 199 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 2.694533e-06  max resid 5.757204e-06 
## ... Similar to previous best
## Run 200 stress 0.2729324 
## Run 201 stress 0.04870928 
## Run 202 stress 0.0447148 
## Run 203 stress 0.04755263 
## Run 204 stress 0.04472623 
## Run 205 stress 0.04755263 
## Run 206 stress 0.04040732 
## ... Procrustes: rmse 2.209009e-05  max resid 4.143171e-05 
## ... Similar to previous best
## Run 207 stress 0.04755266 
## Run 208 stress 0.04781521 
## Run 209 stress 0.04662835 
## Run 210 stress 0.04040732 
## ... Procrustes: rmse 1.704342e-05  max resid 3.029123e-05 
## ... Similar to previous best
## Run 211 stress 0.04040732 
## ... Procrustes: rmse 8.079499e-06  max resid 1.657837e-05 
## ... Similar to previous best
## Run 212 stress 0.04662842 
## Run 213 stress 0.04755257 
## Run 214 stress 0.04870929 
## Run 215 stress 0.0535351 
## Run 216 stress 0.04472623 
## Run 217 stress 0.04040732 
## ... Procrustes: rmse 1.214293e-05  max resid 2.564892e-05 
## ... Similar to previous best
## Run 218 stress 0.04870931 
## Run 219 stress 0.04755268 
## Run 220 stress 0.0487093 
## Run 221 stress 0.04040732 
## ... Procrustes: rmse 9.598011e-06  max resid 1.839256e-05 
## ... Similar to previous best
## Run 222 stress 0.04040732 
## ... Procrustes: rmse 1.697958e-05  max resid 3.185353e-05 
## ... Similar to previous best
## Run 223 stress 0.04755269 
## Run 224 stress 0.04662838 
## Run 225 stress 0.04662839 
## Run 226 stress 0.04870928 
## Run 227 stress 0.04040733 
## ... Procrustes: rmse 1.130293e-05  max resid 3.038279e-05 
## ... Similar to previous best
## Run 228 stress 0.04040732 
## ... Procrustes: rmse 1.468958e-05  max resid 3.271056e-05 
## ... Similar to previous best
## Run 229 stress 0.04781522 
## Run 230 stress 0.04040732 
## ... Procrustes: rmse 8.685329e-06  max resid 1.718219e-05 
## ... Similar to previous best
## Run 231 stress 0.04040732 
## ... Procrustes: rmse 1.290868e-05  max resid 2.393941e-05 
## ... Similar to previous best
## Run 232 stress 0.04040732 
## ... Procrustes: rmse 1.001386e-05  max resid 1.882521e-05 
## ... Similar to previous best
## Run 233 stress 0.04781521 
## Run 234 stress 0.04663049 
## Run 235 stress 0.05353507 
## Run 236 stress 0.04781522 
## Run 237 stress 0.04755275 
## Run 238 stress 0.05017323 
## Run 239 stress 0.04040733 
## ... Procrustes: rmse 4.741153e-05  max resid 8.698396e-05 
## ... Similar to previous best
## Run 240 stress 0.05017315 
## Run 241 stress 0.04755264 
## Run 242 stress 0.04871638 
## Run 243 stress 0.0501732 
## Run 244 stress 0.04663049 
## Run 245 stress 0.04040732 
## ... Procrustes: rmse 3.027078e-05  max resid 5.693158e-05 
## ... Similar to previous best
## Run 246 stress 0.05017318 
## Run 247 stress 0.04040732 
## ... Procrustes: rmse 1.129229e-05  max resid 2.050958e-05 
## ... Similar to previous best
## Run 248 stress 0.05017323 
## Run 249 stress 0.04040732 
## ... Procrustes: rmse 7.14703e-06  max resid 1.29605e-05 
## ... Similar to previous best
## Run 250 stress 0.04870929 
## Run 251 stress 0.04040732 
## ... Procrustes: rmse 8.681672e-06  max resid 1.661434e-05 
## ... Similar to previous best
## Run 252 stress 0.04755262 
## Run 253 stress 0.04472623 
## Run 254 stress 0.05017316 
## Run 255 stress 0.05017317 
## Run 256 stress 0.04040735 
## ... Procrustes: rmse 6.512018e-05  max resid 0.0001163069 
## ... Similar to previous best
## Run 257 stress 0.04781521 
## Run 258 stress 0.04755264 
## Run 259 stress 0.04472623 
## Run 260 stress 0.04040732 
## ... Procrustes: rmse 1.702343e-05  max resid 3.994911e-05 
## ... Similar to previous best
## Run 261 stress 0.04870928 
## Run 262 stress 0.04040732 
## ... Procrustes: rmse 7.789811e-06  max resid 1.503754e-05 
## ... Similar to previous best
## Run 263 stress 0.04755261 
## Run 264 stress 0.04040732 
## ... Procrustes: rmse 3.448942e-06  max resid 6.529461e-06 
## ... Similar to previous best
## Run 265 stress 0.05017324 
## Run 266 stress 0.04040732 
## ... Procrustes: rmse 1.409121e-05  max resid 2.611088e-05 
## ... Similar to previous best
## Run 267 stress 0.04040732 
## ... Procrustes: rmse 1.921111e-06  max resid 3.415702e-06 
## ... Similar to previous best
## Run 268 stress 0.05017317 
## Run 269 stress 0.04040732 
## ... Procrustes: rmse 9.676327e-06  max resid 1.900794e-05 
## ... Similar to previous best
## Run 270 stress 0.04040732 
## ... Procrustes: rmse 3.521447e-05  max resid 6.380954e-05 
## ... Similar to previous best
## Run 271 stress 0.04662836 
## Run 272 stress 0.04040732 
## ... Procrustes: rmse 2.204973e-05  max resid 4.977186e-05 
## ... Similar to previous best
## Run 273 stress 0.04040732 
## ... Procrustes: rmse 2.512867e-05  max resid 5.639339e-05 
## ... Similar to previous best
## Run 274 stress 0.04755254 
## Run 275 stress 0.04870928 
## Run 276 stress 0.04040734 
## ... Procrustes: rmse 6.015479e-05  max resid 0.0001109076 
## ... Similar to previous best
## Run 277 stress 0.04662835 
## Run 278 stress 0.04472625 
## Run 279 stress 0.04040732 
## ... Procrustes: rmse 2.661122e-05  max resid 4.855862e-05 
## ... Similar to previous best
## Run 280 stress 0.04040732 
## ... Procrustes: rmse 2.02802e-05  max resid 3.787523e-05 
## ... Similar to previous best
## Run 281 stress 0.0466284 
## Run 282 stress 0.04870929 
## Run 283 stress 0.04472624 
## Run 284 stress 0.04040735 
## ... Procrustes: rmse 2.286065e-05  max resid 5.799993e-05 
## ... Similar to previous best
## Run 285 stress 0.04472624 
## Run 286 stress 0.05017315 
## Run 287 stress 0.04662837 
## Run 288 stress 0.04040732 
## ... Procrustes: rmse 6.556452e-06  max resid 1.225728e-05 
## ... Similar to previous best
## Run 289 stress 0.04662835 
## Run 290 stress 0.04870936 
## Run 291 stress 0.05017317 
## Run 292 stress 0.04870936 
## Run 293 stress 0.04755268 
## Run 294 stress 0.04662835 
## Run 295 stress 0.0487093 
## Run 296 stress 0.04040732 
## ... Procrustes: rmse 2.101385e-06  max resid 3.944376e-06 
## ... Similar to previous best
## Run 297 stress 0.04471762 
## Run 298 stress 0.04040732 
## ... Procrustes: rmse 3.554596e-05  max resid 6.547314e-05 
## ... Similar to previous best
## Run 299 stress 0.04040732 
## ... Procrustes: rmse 3.554385e-06  max resid 7.119287e-06 
## ... Similar to previous best
## Run 300 stress 0.04040732 
## ... Procrustes: rmse 3.843499e-06  max resid 7.40188e-06 
## ... Similar to previous best
## Run 301 stress 0.04870929 
## Run 302 stress 0.04755256 
## Run 303 stress 0.04870928 
## Run 304 stress 0.04040732 
## ... Procrustes: rmse 1.003798e-05  max resid 1.883389e-05 
## ... Similar to previous best
## Run 305 stress 0.04870928 
## Run 306 stress 0.04040732 
## ... Procrustes: rmse 1.126144e-05  max resid 2.297349e-05 
## ... Similar to previous best
## Run 307 stress 0.05017318 
## Run 308 stress 0.05017317 
## Run 309 stress 0.05017316 
## Run 310 stress 0.05017317 
## Run 311 stress 0.04755261 
## Run 312 stress 0.04040732 
## ... Procrustes: rmse 1.429796e-05  max resid 2.647842e-05 
## ... Similar to previous best
## Run 313 stress 0.04040732 
## ... Procrustes: rmse 2.808434e-05  max resid 5.114973e-05 
## ... Similar to previous best
## Run 314 stress 0.04781521 
## Run 315 stress 0.04040732 
## ... Procrustes: rmse 6.216765e-06  max resid 1.264225e-05 
## ... Similar to previous best
## Run 316 stress 0.05017318 
## Run 317 stress 0.04662837 
## Run 318 stress 0.04870929 
## Run 319 stress 0.04472624 
## Run 320 stress 0.0475526 
## Run 321 stress 0.04472623 
## Run 322 stress 0.04040732 
## ... Procrustes: rmse 1.22799e-05  max resid 2.332555e-05 
## ... Similar to previous best
## Run 323 stress 0.04870929 
## Run 324 stress 0.04781522 
## Run 325 stress 0.04472623 
## Run 326 stress 0.04781521 
## Run 327 stress 0.0475526 
## Run 328 stress 0.0475526 
## Run 329 stress 0.04040732 
## ... Procrustes: rmse 1.177509e-05  max resid 2.229274e-05 
## ... Similar to previous best
## Run 330 stress 0.05017316 
## Run 331 stress 0.04040732 
## ... Procrustes: rmse 1.625207e-05  max resid 3.029052e-05 
## ... Similar to previous best
## Run 332 stress 0.04040732 
## ... Procrustes: rmse 2.256446e-05  max resid 4.195255e-05 
## ... Similar to previous best
## Run 333 stress 0.04755259 
## Run 334 stress 0.04040732 
## ... Procrustes: rmse 1.969826e-05  max resid 3.588552e-05 
## ... Similar to previous best
## Run 335 stress 0.04040732 
## ... Procrustes: rmse 7.108566e-06  max resid 1.627319e-05 
## ... Similar to previous best
## Run 336 stress 0.04755261 
## Run 337 stress 0.04870928 
## Run 338 stress 0.04870931 
## Run 339 stress 0.04472624 
## Run 340 stress 0.04040732 
## ... Procrustes: rmse 2.738161e-05  max resid 4.928769e-05 
## ... Similar to previous best
## Run 341 stress 0.04781521 
## Run 342 stress 0.05017316 
## Run 343 stress 0.05017316 
## Run 344 stress 0.04040732 
## ... Procrustes: rmse 5.600726e-06  max resid 1.014986e-05 
## ... Similar to previous best
## Run 345 stress 0.04040732 
## ... Procrustes: rmse 5.456796e-06  max resid 1.115193e-05 
## ... Similar to previous best
## Run 346 stress 0.04781521 
## Run 347 stress 0.04040732 
## ... Procrustes: rmse 1.787457e-05  max resid 3.147303e-05 
## ... Similar to previous best
## Run 348 stress 0.04755253 
## Run 349 stress 0.04040732 
## ... Procrustes: rmse 1.502877e-05  max resid 3.111399e-05 
## ... Similar to previous best
## Run 350 stress 0.04040732 
## ... Procrustes: rmse 1.491852e-05  max resid 3.076026e-05 
## ... Similar to previous best
## Run 351 stress 0.04040732 
## ... Procrustes: rmse 1.233062e-05  max resid 2.266818e-05 
## ... Similar to previous best
## Run 352 stress 0.04663047 
## Run 353 stress 0.04870929 
## Run 354 stress 0.05017319 
## Run 355 stress 0.04781521 
## Run 356 stress 0.04781521 
## Run 357 stress 0.04781521 
## Run 358 stress 0.04781521 
## Run 359 stress 0.3095288 
## Run 360 stress 0.04870928 
## Run 361 stress 0.04755258 
## Run 362 stress 0.04472623 
## Run 363 stress 0.04662835 
## Run 364 stress 0.04472623 
## Run 365 stress 0.04040732 
## ... Procrustes: rmse 1.307082e-05  max resid 2.382421e-05 
## ... Similar to previous best
## Run 366 stress 0.05017319 
## Run 367 stress 0.04040732 
## ... Procrustes: rmse 6.282821e-06  max resid 1.20621e-05 
## ... Similar to previous best
## Run 368 stress 0.04781521 
## Run 369 stress 0.04755268 
## Run 370 stress 0.05017319 
## Run 371 stress 0.04040732 
## ... Procrustes: rmse 5.155542e-06  max resid 9.964557e-06 
## ... Similar to previous best
## Run 372 stress 0.04870928 
## Run 373 stress 0.04870929 
## Run 374 stress 0.04472623 
## Run 375 stress 0.04870928 
## Run 376 stress 0.2820072 
## Run 377 stress 0.04040732 
## ... Procrustes: rmse 1.178705e-05  max resid 2.291158e-05 
## ... Similar to previous best
## Run 378 stress 0.05017319 
## Run 379 stress 0.255192 
## Run 380 stress 0.2819539 
## Run 381 stress 0.04781521 
## Run 382 stress 0.04870934 
## Run 383 stress 0.2700182 
## Run 384 stress 0.04040732 
## ... Procrustes: rmse 6.988365e-06  max resid 1.347334e-05 
## ... Similar to previous best
## Run 385 stress 0.04662835 
## Run 386 stress 0.04040732 
## ... Procrustes: rmse 1.403901e-05  max resid 2.827716e-05 
## ... Similar to previous best
## Run 387 stress 0.04040732 
## ... Procrustes: rmse 8.219049e-06  max resid 1.747032e-05 
## ... Similar to previous best
## Run 388 stress 0.04040733 
## ... Procrustes: rmse 3.585964e-05  max resid 7.104581e-05 
## ... Similar to previous best
## Run 389 stress 0.04040734 
## ... Procrustes: rmse 5.239662e-05  max resid 9.822895e-05 
## ... Similar to previous best
## Run 390 stress 0.04472623 
## Run 391 stress 0.04472624 
## Run 392 stress 0.04755254 
## Run 393 stress 0.04870928 
## Run 394 stress 0.0475526 
## Run 395 stress 0.04040733 
## ... Procrustes: rmse 3.518446e-05  max resid 6.835186e-05 
## ... Similar to previous best
## Run 396 stress 0.05017316 
## Run 397 stress 0.05353515 
## Run 398 stress 0.04781523 
## Run 399 stress 0.04755271 
## Run 400 stress 0.04040732 
## ... Procrustes: rmse 1.496106e-05  max resid 3.439863e-05 
## ... Similar to previous best
## Run 401 stress 0.04781523 
## Run 402 stress 0.05017318 
## Run 403 stress 0.04040732 
## ... Procrustes: rmse 2.123085e-05  max resid 3.921199e-05 
## ... Similar to previous best
## Run 404 stress 0.05353518 
## Run 405 stress 0.04755255 
## Run 406 stress 0.05353513 
## Run 407 stress 0.04040732 
## ... Procrustes: rmse 1.277695e-05  max resid 2.36371e-05 
## ... Similar to previous best
## Run 408 stress 0.04040732 
## ... Procrustes: rmse 9.706051e-06  max resid 1.831726e-05 
## ... Similar to previous best
## Run 409 stress 0.04040732 
## ... Procrustes: rmse 4.192923e-06  max resid 7.950609e-06 
## ... Similar to previous best
## Run 410 stress 0.2820455 
## Run 411 stress 0.04040732 
## ... Procrustes: rmse 4.996432e-06  max resid 8.899096e-06 
## ... Similar to previous best
## Run 412 stress 0.04040733 
## ... Procrustes: rmse 2.554826e-05  max resid 4.863284e-05 
## ... Similar to previous best
## Run 413 stress 0.05353514 
## Run 414 stress 0.04871639 
## Run 415 stress 0.04040732 
## ... Procrustes: rmse 5.91961e-06  max resid 1.170701e-05 
## ... Similar to previous best
## Run 416 stress 0.04472624 
## Run 417 stress 0.05353512 
## Run 418 stress 0.04662838 
## Run 419 stress 0.04040732 
## ... Procrustes: rmse 3.769669e-05  max resid 7.067768e-05 
## ... Similar to previous best
## Run 420 stress 0.04040732 
## ... Procrustes: rmse 2.029873e-05  max resid 3.726428e-05 
## ... Similar to previous best
## Run 421 stress 0.05017318 
## Run 422 stress 0.04870928 
## Run 423 stress 0.04040732 
## ... Procrustes: rmse 1.340853e-05  max resid 2.451428e-05 
## ... Similar to previous best
## Run 424 stress 0.04472623 
## Run 425 stress 0.04040732 
## ... Procrustes: rmse 1.053159e-05  max resid 1.903161e-05 
## ... Similar to previous best
## Run 426 stress 0.05017316 
## Run 427 stress 0.04472624 
## Run 428 stress 0.04781521 
## Run 429 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 2.181339e-06  max resid 4.211665e-06 
## ... Similar to previous best
## Run 430 stress 0.04870928 
## Run 431 stress 0.04040732 
## ... Procrustes: rmse 1.641316e-05  max resid 3.947134e-05 
## ... Similar to previous best
## Run 432 stress 0.04040732 
## ... Procrustes: rmse 2.380347e-05  max resid 4.214901e-05 
## ... Similar to previous best
## Run 433 stress 0.0475526 
## Run 434 stress 0.04472624 
## Run 435 stress 0.04870938 
## Run 436 stress 0.04040732 
## ... Procrustes: rmse 8.06421e-06  max resid 1.528732e-05 
## ... Similar to previous best
## Run 437 stress 0.04040732 
## ... Procrustes: rmse 6.306343e-06  max resid 1.122827e-05 
## ... Similar to previous best
## Run 438 stress 0.05017319 
## Run 439 stress 0.04040732 
## ... Procrustes: rmse 1.05013e-05  max resid 2.204054e-05 
## ... Similar to previous best
## Run 440 stress 0.04755262 
## Run 441 stress 0.04040732 
## ... Procrustes: rmse 2.05983e-05  max resid 3.709569e-05 
## ... Similar to previous best
## Run 442 stress 0.04781521 
## Run 443 stress 0.2825458 
## Run 444 stress 0.04781521 
## Run 445 stress 0.04755267 
## Run 446 stress 0.04472625 
## Run 447 stress 0.04781521 
## Run 448 stress 0.04870928 
## Run 449 stress 0.04781521 
## Run 450 stress 0.04040732 
## ... Procrustes: rmse 3.740007e-06  max resid 7.285776e-06 
## ... Similar to previous best
## Run 451 stress 0.04040732 
## ... Procrustes: rmse 1.510093e-06  max resid 2.40829e-06 
## ... Similar to previous best
## Run 452 stress 0.04040732 
## ... Procrustes: rmse 3.47366e-06  max resid 7.504835e-06 
## ... Similar to previous best
## Run 453 stress 0.04040732 
## ... Procrustes: rmse 6.355934e-06  max resid 1.128908e-05 
## ... Similar to previous best
## Run 454 stress 0.04040732 
## ... Procrustes: rmse 1.175365e-06  max resid 1.747326e-06 
## ... Similar to previous best
## Run 455 stress 0.04870928 
## Run 456 stress 0.2811955 
## Run 457 stress 0.04040732 
## ... Procrustes: rmse 7.207271e-06  max resid 1.278636e-05 
## ... Similar to previous best
## Run 458 stress 0.04662837 
## Run 459 stress 0.04040732 
## ... Procrustes: rmse 1.175038e-05  max resid 2.099232e-05 
## ... Similar to previous best
## Run 460 stress 0.04870932 
## Run 461 stress 0.04040732 
## ... Procrustes: rmse 4.738588e-06  max resid 9.375677e-06 
## ... Similar to previous best
## Run 462 stress 0.05017317 
## Run 463 stress 0.04663058 
## Run 464 stress 0.04040732 
## ... Procrustes: rmse 9.232701e-06  max resid 2.028416e-05 
## ... Similar to previous best
## Run 465 stress 0.2820455 
## Run 466 stress 0.05017317 
## Run 467 stress 0.05017319 
## Run 468 stress 0.04040733 
## ... Procrustes: rmse 4.880435e-05  max resid 8.637773e-05 
## ... Similar to previous best
## Run 469 stress 0.04781521 
## Run 470 stress 0.04040732 
## ... Procrustes: rmse 1.150441e-05  max resid 2.146243e-05 
## ... Similar to previous best
## Run 471 stress 0.05017318 
## Run 472 stress 0.04662838 
## Run 473 stress 0.05017318 
## Run 474 stress 0.04040732 
## ... Procrustes: rmse 1.855688e-06  max resid 3.100377e-06 
## ... Similar to previous best
## Run 475 stress 0.04040732 
## ... Procrustes: rmse 6.151474e-06  max resid 1.188785e-05 
## ... Similar to previous best
## Run 476 stress 0.04755274 
## Run 477 stress 0.04755262 
## Run 478 stress 0.04870931 
## Run 479 stress 0.04662841 
## Run 480 stress 0.2490591 
## Run 481 stress 0.04472624 
## Run 482 stress 0.05353521 
## Run 483 stress 0.04040732 
## ... Procrustes: rmse 2.980107e-06  max resid 6.728751e-06 
## ... Similar to previous best
## Run 484 stress 0.04781521 
## Run 485 stress 0.05017318 
## Run 486 stress 0.04870931 
## Run 487 stress 0.04781521 
## Run 488 stress 0.0447148 
## Run 489 stress 0.04040732 
## ... Procrustes: rmse 5.959038e-06  max resid 1.323685e-05 
## ... Similar to previous best
## Run 490 stress 0.04663048 
## Run 491 stress 0.04870934 
## Run 492 stress 0.0487093 
## Run 493 stress 0.2736212 
## Run 494 stress 0.04040732 
## ... Procrustes: rmse 2.001565e-05  max resid 4.287309e-05 
## ... Similar to previous best
## Run 495 stress 0.05017315 
## Run 496 stress 0.04040732 
## ... Procrustes: rmse 5.676546e-06  max resid 1.011043e-05 
## ... Similar to previous best
## Run 497 stress 0.04472623 
## Run 498 stress 0.05017319 
## Run 499 stress 0.05017317 
## Run 500 stress 0.04755254 
## *** Best solution repeated 24 times
# Stratified lakes
fds_NMDS <- metaMDS(fds_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.04319061 
## Run 1 stress 0.03501043 
## ... New best solution
## ... Procrustes: rmse 0.1530271  max resid 0.2647951 
## Run 2 stress 0.09269267 
## Run 3 stress 0.04319061 
## Run 4 stress 0.03635602 
## Run 5 stress 0.03501044 
## ... Procrustes: rmse 2.103455e-05  max resid 4.53517e-05 
## ... Similar to previous best
## Run 6 stress 0.03635603 
## Run 7 stress 0.04319061 
## Run 8 stress 0.2538018 
## Run 9 stress 0.2951512 
## Run 10 stress 0.04319061 
## Run 11 stress 0.04319061 
## Run 12 stress 0.03501046 
## ... Procrustes: rmse 7.775032e-05  max resid 0.0001654158 
## ... Similar to previous best
## Run 13 stress 0.03635607 
## Run 14 stress 0.257864 
## Run 15 stress 0.03635602 
## Run 16 stress 0.04319061 
## Run 17 stress 0.03501047 
## ... Procrustes: rmse 8.884818e-05  max resid 0.0001868573 
## ... Similar to previous best
## Run 18 stress 0.03501043 
## ... Procrustes: rmse 1.025179e-05  max resid 1.842045e-05 
## ... Similar to previous best
## Run 19 stress 0.036356 
## Run 20 stress 0.03635601 
## Run 21 stress 0.09269264 
## Run 22 stress 0.03635603 
## Run 23 stress 0.2480466 
## Run 24 stress 0.04319061 
## Run 25 stress 0.2852145 
## Run 26 stress 0.09815918 
## Run 27 stress 0.036356 
## Run 28 stress 0.04319061 
## Run 29 stress 0.03501042 
## ... New best solution
## ... Procrustes: rmse 6.49781e-05  max resid 0.0001343971 
## ... Similar to previous best
## Run 30 stress 0.036356 
## Run 31 stress 0.03501046 
## ... Procrustes: rmse 0.0001426749  max resid 0.0002998465 
## ... Similar to previous best
## Run 32 stress 0.04319061 
## Run 33 stress 0.03635603 
## Run 34 stress 0.04319061 
## Run 35 stress 0.09815918 
## Run 36 stress 0.03635606 
## Run 37 stress 0.036356 
## Run 38 stress 0.04319061 
## Run 39 stress 0.2136001 
## Run 40 stress 0.03501045 
## ... Procrustes: rmse 0.0001076445  max resid 0.0002250937 
## ... Similar to previous best
## Run 41 stress 0.03635603 
## Run 42 stress 0.2842805 
## Run 43 stress 0.09815919 
## Run 44 stress 0.036356 
## Run 45 stress 0.03635599 
## Run 46 stress 0.2809268 
## Run 47 stress 0.03635599 
## Run 48 stress 0.2578638 
## Run 49 stress 0.3080557 
## Run 50 stress 0.03501056 
## ... Procrustes: rmse 0.0001682016  max resid 0.0003496027 
## ... Similar to previous best
## Run 51 stress 0.03501047 
## ... Procrustes: rmse 0.0001420621  max resid 0.0003000775 
## ... Similar to previous best
## Run 52 stress 0.03501049 
## ... Procrustes: rmse 0.000178946  max resid 0.0003721139 
## ... Similar to previous best
## Run 53 stress 0.04319061 
## Run 54 stress 0.03501043 
## ... Procrustes: rmse 5.392441e-05  max resid 0.000117388 
## ... Similar to previous best
## Run 55 stress 0.03635605 
## Run 56 stress 0.04319061 
## Run 57 stress 0.04319062 
## Run 58 stress 0.03635606 
## Run 59 stress 0.03501043 
## ... Procrustes: rmse 6.158365e-05  max resid 0.0001190181 
## ... Similar to previous best
## Run 60 stress 0.03635605 
## Run 61 stress 0.09269266 
## Run 62 stress 0.03635604 
## Run 63 stress 0.04319061 
## Run 64 stress 0.09269266 
## Run 65 stress 0.036356 
## Run 66 stress 0.04319061 
## Run 67 stress 0.03501042 
## ... New best solution
## ... Procrustes: rmse 2.898403e-05  max resid 6.007167e-05 
## ... Similar to previous best
## Run 68 stress 0.0363561 
## Run 69 stress 0.04319061 
## Run 70 stress 0.09815918 
## Run 71 stress 0.09815918 
## Run 72 stress 0.03635602 
## Run 73 stress 0.3040332 
## Run 74 stress 0.03501043 
## ... Procrustes: rmse 1.34361e-05  max resid 2.610059e-05 
## ... Similar to previous best
## Run 75 stress 0.04319061 
## Run 76 stress 0.2136001 
## Run 77 stress 0.3073538 
## Run 78 stress 0.03501043 
## ... Procrustes: rmse 3.074973e-05  max resid 6.434069e-05 
## ... Similar to previous best
## Run 79 stress 0.04319061 
## Run 80 stress 0.03635602 
## Run 81 stress 0.03501044 
## ... Procrustes: rmse 7.622626e-05  max resid 0.0001599976 
## ... Similar to previous best
## Run 82 stress 0.03635603 
## Run 83 stress 0.09269266 
## Run 84 stress 0.036356 
## Run 85 stress 0.03635606 
## Run 86 stress 0.04319061 
## Run 87 stress 0.09269265 
## Run 88 stress 0.2233234 
## Run 89 stress 0.03635601 
## Run 90 stress 0.03635603 
## Run 91 stress 0.03501055 
## ... Procrustes: rmse 0.0002143894  max resid 0.0004485188 
## ... Similar to previous best
## Run 92 stress 0.04319061 
## Run 93 stress 0.09269264 
## Run 94 stress 0.04319061 
## Run 95 stress 0.03501045 
## ... Procrustes: rmse 9.691522e-05  max resid 0.0002042619 
## ... Similar to previous best
## Run 96 stress 0.03501046 
## ... Procrustes: rmse 0.0001107165  max resid 0.0002361537 
## ... Similar to previous best
## Run 97 stress 0.09815918 
## Run 98 stress 0.04319061 
## Run 99 stress 0.03635602 
## Run 100 stress 0.3083098 
## Run 101 stress 0.04319061 
## Run 102 stress 0.04319061 
## Run 103 stress 0.04319061 
## Run 104 stress 0.03635603 
## Run 105 stress 0.2646971 
## Run 106 stress 0.04319061 
## Run 107 stress 0.2538018 
## Run 108 stress 0.2233234 
## Run 109 stress 0.03501043 
## ... Procrustes: rmse 1.227829e-05  max resid 1.817028e-05 
## ... Similar to previous best
## Run 110 stress 0.04319061 
## Run 111 stress 0.036356 
## Run 112 stress 0.03501042 
## ... Procrustes: rmse 2.982458e-05  max resid 5.982319e-05 
## ... Similar to previous best
## Run 113 stress 0.03501043 
## ... Procrustes: rmse 7.246956e-05  max resid 0.0001485967 
## ... Similar to previous best
## Run 114 stress 0.03635606 
## Run 115 stress 0.09269267 
## Run 116 stress 0.04319061 
## Run 117 stress 0.09269266 
## Run 118 stress 0.03635599 
## Run 119 stress 0.03635609 
## Run 120 stress 0.04319061 
## Run 121 stress 0.036356 
## Run 122 stress 0.09815919 
## Run 123 stress 0.036356 
## Run 124 stress 0.04319061 
## Run 125 stress 0.03501045 
## ... Procrustes: rmse 0.0001094454  max resid 0.0002289 
## ... Similar to previous best
## Run 126 stress 0.04319061 
## Run 127 stress 0.04319061 
## Run 128 stress 0.03635604 
## Run 129 stress 0.2538018 
## Run 130 stress 0.2646971 
## Run 131 stress 0.04319061 
## Run 132 stress 0.04319061 
## Run 133 stress 0.04319061 
## Run 134 stress 0.03501053 
## ... Procrustes: rmse 0.0001871409  max resid 0.0003886398 
## ... Similar to previous best
## Run 135 stress 0.2233234 
## Run 136 stress 0.04319061 
## Run 137 stress 0.3083098 
## Run 138 stress 0.04319061 
## Run 139 stress 0.04319061 
## Run 140 stress 0.09815918 
## Run 141 stress 0.04319061 
## Run 142 stress 0.09269265 
## Run 143 stress 0.04319061 
## Run 144 stress 0.09269264 
## Run 145 stress 0.03635606 
## Run 146 stress 0.03635603 
## Run 147 stress 0.0363561 
## Run 148 stress 0.04319061 
## Run 149 stress 0.03501048 
## ... Procrustes: rmse 0.000132017  max resid 0.0002771874 
## ... Similar to previous best
## Run 150 stress 0.04319061 
## Run 151 stress 0.04319061 
## Run 152 stress 0.03501046 
## ... Procrustes: rmse 0.000127479  max resid 0.0002671348 
## ... Similar to previous best
## Run 153 stress 0.09269265 
## Run 154 stress 0.04319061 
## Run 155 stress 0.09815918 
## Run 156 stress 0.03501043 
## ... Procrustes: rmse 2.36619e-05  max resid 4.892331e-05 
## ... Similar to previous best
## Run 157 stress 0.03635607 
## Run 158 stress 0.036356 
## Run 159 stress 0.04319061 
## Run 160 stress 0.03501043 
## ... Procrustes: rmse 4.307112e-05  max resid 8.855768e-05 
## ... Similar to previous best
## Run 161 stress 0.03635602 
## Run 162 stress 0.04319061 
## Run 163 stress 0.03501044 
## ... Procrustes: rmse 5.273719e-05  max resid 0.0001106041 
## ... Similar to previous best
## Run 164 stress 0.04319061 
## Run 165 stress 0.03501047 
## ... Procrustes: rmse 0.0001180706  max resid 0.0002480916 
## ... Similar to previous best
## Run 166 stress 0.04319061 
## Run 167 stress 0.3083098 
## Run 168 stress 0.04319061 
## Run 169 stress 0.09815918 
## Run 170 stress 0.04319061 
## Run 171 stress 0.03501043 
## ... Procrustes: rmse 1.533827e-05  max resid 3.213189e-05 
## ... Similar to previous best
## Run 172 stress 0.03635602 
## Run 173 stress 0.2136001 
## Run 174 stress 0.2233234 
## Run 175 stress 0.04319061 
## Run 176 stress 0.09269267 
## Run 177 stress 0.03501043 
## ... Procrustes: rmse 3.870191e-05  max resid 8.086825e-05 
## ... Similar to previous best
## Run 178 stress 0.264697 
## Run 179 stress 0.04319061 
## Run 180 stress 0.04319061 
## Run 181 stress 0.04319061 
## Run 182 stress 0.03635608 
## Run 183 stress 0.2842805 
## Run 184 stress 0.03501042 
## ... Procrustes: rmse 3.147872e-05  max resid 6.560569e-05 
## ... Similar to previous best
## Run 185 stress 0.04319061 
## Run 186 stress 0.03501043 
## ... Procrustes: rmse 5.648188e-05  max resid 0.0001202346 
## ... Similar to previous best
## Run 187 stress 0.04319061 
## Run 188 stress 0.04319061 
## Run 189 stress 0.04319061 
## Run 190 stress 0.09269268 
## Run 191 stress 0.03635608 
## Run 192 stress 0.03635601 
## Run 193 stress 0.03635602 
## Run 194 stress 0.04319061 
## Run 195 stress 0.04319061 
## Run 196 stress 0.2538018 
## Run 197 stress 0.04319061 
## Run 198 stress 0.04319061 
## Run 199 stress 0.0350105 
## ... Procrustes: rmse 0.0001640653  max resid 0.0003417369 
## ... Similar to previous best
## Run 200 stress 0.04319061 
## Run 201 stress 0.09269267 
## Run 202 stress 0.03635604 
## Run 203 stress 0.03635602 
## Run 204 stress 0.03635603 
## Run 205 stress 0.03635605 
## Run 206 stress 0.03501046 
## ... Procrustes: rmse 0.0001287609  max resid 0.0002721933 
## ... Similar to previous best
## Run 207 stress 0.09269265 
## Run 208 stress 0.0363561 
## Run 209 stress 0.03501048 
## ... Procrustes: rmse 0.0001552405  max resid 0.0003255187 
## ... Similar to previous best
## Run 210 stress 0.04319061 
## Run 211 stress 0.0350105 
## ... Procrustes: rmse 0.0001442564  max resid 0.0003001832 
## ... Similar to previous best
## Run 212 stress 0.09815918 
## Run 213 stress 0.03635603 
## Run 214 stress 0.09815918 
## Run 215 stress 0.306365 
## Run 216 stress 0.03635605 
## Run 217 stress 0.09815918 
## Run 218 stress 0.03501048 
## ... Procrustes: rmse 0.0001639404  max resid 0.00034379 
## ... Similar to previous best
## Run 219 stress 0.03501052 
## ... Procrustes: rmse 0.0001820666  max resid 0.0003805878 
## ... Similar to previous best
## Run 220 stress 0.04319061 
## Run 221 stress 0.03501043 
## ... Procrustes: rmse 4.726908e-05  max resid 9.916255e-05 
## ... Similar to previous best
## Run 222 stress 0.04319061 
## Run 223 stress 0.3071635 
## Run 224 stress 0.03635599 
## Run 225 stress 0.03635605 
## Run 226 stress 0.2578643 
## Run 227 stress 0.03501049 
## ... Procrustes: rmse 0.0001504992  max resid 0.0003156101 
## ... Similar to previous best
## Run 228 stress 0.3083098 
## Run 229 stress 0.09815918 
## Run 230 stress 0.03501047 
## ... Procrustes: rmse 0.0001426103  max resid 0.0002985265 
## ... Similar to previous best
## Run 231 stress 0.04319061 
## Run 232 stress 0.03635602 
## Run 233 stress 0.03501044 
## ... Procrustes: rmse 1.961532e-05  max resid 3.415189e-05 
## ... Similar to previous best
## Run 234 stress 0.04319061 
## Run 235 stress 0.03501043 
## ... Procrustes: rmse 2.725204e-05  max resid 5.542862e-05 
## ... Similar to previous best
## Run 236 stress 0.09815918 
## Run 237 stress 0.03501049 
## ... Procrustes: rmse 0.0001695389  max resid 0.0003555416 
## ... Similar to previous best
## Run 238 stress 0.04319061 
## Run 239 stress 0.04319061 
## Run 240 stress 0.0981592 
## Run 241 stress 0.03501055 
## ... Procrustes: rmse 0.0002337073  max resid 0.0004902976 
## ... Similar to previous best
## Run 242 stress 0.04319061 
## Run 243 stress 0.09269267 
## Run 244 stress 0.04319061 
## Run 245 stress 0.2538018 
## Run 246 stress 0.04319061 
## Run 247 stress 0.036356 
## Run 248 stress 0.03635599 
## Run 249 stress 0.03501042 
## ... Procrustes: rmse 5.411407e-06  max resid 8.102524e-06 
## ... Similar to previous best
## Run 250 stress 0.03635606 
## Run 251 stress 0.09269264 
## Run 252 stress 0.04319061 
## Run 253 stress 0.04319061 
## Run 254 stress 0.04319061 
## Run 255 stress 0.03501042 
## ... New best solution
## ... Procrustes: rmse 1.266312e-05  max resid 2.84144e-05 
## ... Similar to previous best
## Run 256 stress 0.03635602 
## Run 257 stress 0.03501048 
## ... Procrustes: rmse 0.0001460686  max resid 0.0003134972 
## ... Similar to previous best
## Run 258 stress 0.03501044 
## ... Procrustes: rmse 7.358206e-05  max resid 0.0001597857 
## ... Similar to previous best
## Run 259 stress 0.03501045 
## ... Procrustes: rmse 9.743525e-05  max resid 0.0001978316 
## ... Similar to previous best
## Run 260 stress 0.03501052 
## ... Procrustes: rmse 0.0001823009  max resid 0.0003739064 
## ... Similar to previous best
## Run 261 stress 0.04319061 
## Run 262 stress 0.03501046 
## ... Procrustes: rmse 0.0001217546  max resid 0.000249204 
## ... Similar to previous best
## Run 263 stress 0.2136001 
## Run 264 stress 0.04319061 
## Run 265 stress 0.03501047 
## ... Procrustes: rmse 0.000125198  max resid 0.0002677487 
## ... Similar to previous best
## Run 266 stress 0.09269265 
## Run 267 stress 0.2842805 
## Run 268 stress 0.04319061 
## Run 269 stress 0.04319061 
## Run 270 stress 0.03635599 
## Run 271 stress 0.09815918 
## Run 272 stress 0.04319061 
## Run 273 stress 0.03501044 
## ... Procrustes: rmse 6.277429e-05  max resid 0.0001362912 
## ... Similar to previous best
## Run 274 stress 0.04319061 
## Run 275 stress 0.03635608 
## Run 276 stress 0.04319061 
## Run 277 stress 0.03635607 
## Run 278 stress 0.04319061 
## Run 279 stress 0.03501043 
## ... Procrustes: rmse 4.211731e-05  max resid 9.334111e-05 
## ... Similar to previous best
## Run 280 stress 0.03635605 
## Run 281 stress 0.03635601 
## Run 282 stress 0.03501045 
## ... Procrustes: rmse 9.928924e-05  max resid 0.0002136593 
## ... Similar to previous best
## Run 283 stress 0.03501043 
## ... Procrustes: rmse 2.91355e-05  max resid 6.512046e-05 
## ... Similar to previous best
## Run 284 stress 0.03635608 
## Run 285 stress 0.03501044 
## ... Procrustes: rmse 7.187011e-05  max resid 0.0001454065 
## ... Similar to previous best
## Run 286 stress 0.2233234 
## Run 287 stress 0.09815918 
## Run 288 stress 0.09269266 
## Run 289 stress 0.2842805 
## Run 290 stress 0.03501043 
## ... Procrustes: rmse 1.023652e-05  max resid 2.011788e-05 
## ... Similar to previous best
## Run 291 stress 0.04319061 
## Run 292 stress 0.03501046 
## ... Procrustes: rmse 9.592396e-05  max resid 0.0002058364 
## ... Similar to previous best
## Run 293 stress 0.03635601 
## Run 294 stress 0.04319061 
## Run 295 stress 0.04319061 
## Run 296 stress 0.03635609 
## Run 297 stress 0.2842805 
## Run 298 stress 0.09815918 
## Run 299 stress 0.09269264 
## Run 300 stress 0.04319061 
## Run 301 stress 0.03635607 
## Run 302 stress 0.04319061 
## Run 303 stress 0.03501047 
## ... Procrustes: rmse 0.0001065401  max resid 0.0002151718 
## ... Similar to previous best
## Run 304 stress 0.03501044 
## ... Procrustes: rmse 6.782667e-05  max resid 0.0001525133 
## ... Similar to previous best
## Run 305 stress 0.03501043 
## ... Procrustes: rmse 4.292964e-05  max resid 8.099995e-05 
## ... Similar to previous best
## Run 306 stress 0.03635601 
## Run 307 stress 0.09815918 
## Run 308 stress 0.03501044 
## ... Procrustes: rmse 8.262984e-05  max resid 0.0001664703 
## ... Similar to previous best
## Run 309 stress 0.04319061 
## Run 310 stress 0.2510632 
## Run 311 stress 0.2775576 
## Run 312 stress 0.03501046 
## ... Procrustes: rmse 0.0001228263  max resid 0.0002601721 
## ... Similar to previous best
## Run 313 stress 0.04319061 
## Run 314 stress 0.036356 
## Run 315 stress 0.03501043 
## ... Procrustes: rmse 4.119692e-05  max resid 9.005424e-05 
## ... Similar to previous best
## Run 316 stress 0.03501047 
## ... Procrustes: rmse 0.0001270687  max resid 0.0002713193 
## ... Similar to previous best
## Run 317 stress 0.2529753 
## Run 318 stress 0.04319061 
## Run 319 stress 0.04319061 
## Run 320 stress 0.2852153 
## Run 321 stress 0.03635608 
## Run 322 stress 0.03501045 
## ... Procrustes: rmse 9.815871e-05  max resid 0.0001990013 
## ... Similar to previous best
## Run 323 stress 0.04319061 
## Run 324 stress 0.09815918 
## Run 325 stress 0.03501045 
## ... Procrustes: rmse 0.0001057061  max resid 0.0002271482 
## ... Similar to previous best
## Run 326 stress 0.09269266 
## Run 327 stress 0.04319061 
## Run 328 stress 0.04319061 
## Run 329 stress 0.2754895 
## Run 330 stress 0.09815918 
## Run 331 stress 0.04319061 
## Run 332 stress 0.04319061 
## Run 333 stress 0.03501043 
## ... Procrustes: rmse 4.377471e-05  max resid 9.85577e-05 
## ... Similar to previous best
## Run 334 stress 0.04319061 
## Run 335 stress 0.09269264 
## Run 336 stress 0.03501043 
## ... Procrustes: rmse 5.06674e-05  max resid 0.0001108225 
## ... Similar to previous best
## Run 337 stress 0.03501043 
## ... Procrustes: rmse 4.90025e-05  max resid 0.0001072211 
## ... Similar to previous best
## Run 338 stress 0.04319061 
## Run 339 stress 0.2136001 
## Run 340 stress 0.04319061 
## Run 341 stress 0.04319061 
## Run 342 stress 0.04319061 
## Run 343 stress 0.2538018 
## Run 344 stress 0.09815918 
## Run 345 stress 0.03501044 
## ... Procrustes: rmse 2.486938e-05  max resid 4.555464e-05 
## ... Similar to previous best
## Run 346 stress 0.04319061 
## Run 347 stress 0.04319061 
## Run 348 stress 0.03501047 
## ... Procrustes: rmse 0.0001316436  max resid 0.0002698554 
## ... Similar to previous best
## Run 349 stress 0.03635602 
## Run 350 stress 0.04319061 
## Run 351 stress 0.04319061 
## Run 352 stress 0.04319061 
## Run 353 stress 0.2520602 
## Run 354 stress 0.2842805 
## Run 355 stress 0.09269265 
## Run 356 stress 0.04319061 
## Run 357 stress 0.04319061 
## Run 358 stress 0.03635608 
## Run 359 stress 0.3083098 
## Run 360 stress 0.03501048 
## ... Procrustes: rmse 0.0001566424  max resid 0.0003224253 
## ... Similar to previous best
## Run 361 stress 0.04319061 
## Run 362 stress 0.04319061 
## Run 363 stress 0.04319061 
## Run 364 stress 0.03635608 
## Run 365 stress 0.03635609 
## Run 366 stress 0.09269265 
## Run 367 stress 0.04319061 
## Run 368 stress 0.03635602 
## Run 369 stress 0.04319061 
## Run 370 stress 0.03635601 
## Run 371 stress 0.2809268 
## Run 372 stress 0.09269269 
## Run 373 stress 0.03635609 
## Run 374 stress 0.09815919 
## Run 375 stress 0.04319061 
## Run 376 stress 0.04319061 
## Run 377 stress 0.03635601 
## Run 378 stress 0.04319061 
## Run 379 stress 0.09815918 
## Run 380 stress 0.09269264 
## Run 381 stress 0.04319061 
## Run 382 stress 0.03501044 
## ... Procrustes: rmse 7.070254e-05  max resid 0.0001517734 
## ... Similar to previous best
## Run 383 stress 0.03501048 
## ... Procrustes: rmse 0.0001425967  max resid 0.0003043047 
## ... Similar to previous best
## Run 384 stress 0.04319061 
## Run 385 stress 0.036356 
## Run 386 stress 0.2538018 
## Run 387 stress 0.09269266 
## Run 388 stress 0.03501048 
## ... Procrustes: rmse 0.0001271382  max resid 0.0002703806 
## ... Similar to previous best
## Run 389 stress 0.03635601 
## Run 390 stress 0.04319061 
## Run 391 stress 0.04319061 
## Run 392 stress 0.04319061 
## Run 393 stress 0.04319061 
## Run 394 stress 0.03501042 
## ... Procrustes: rmse 2.085454e-05  max resid 4.768567e-05 
## ... Similar to previous best
## Run 395 stress 0.04319061 
## Run 396 stress 0.03501048 
## ... Procrustes: rmse 0.0001569951  max resid 0.0003231764 
## ... Similar to previous best
## Run 397 stress 0.04319061 
## Run 398 stress 0.04319061 
## Run 399 stress 0.2233234 
## Run 400 stress 0.2646972 
## Run 401 stress 0.0350105 
## ... Procrustes: rmse 0.0001814337  max resid 0.0003745103 
## ... Similar to previous best
## Run 402 stress 0.03501044 
## ... Procrustes: rmse 7.141439e-05  max resid 0.0001565755 
## ... Similar to previous best
## Run 403 stress 0.04319061 
## Run 404 stress 0.2852164 
## Run 405 stress 0.04319061 
## Run 406 stress 0.04319061 
## Run 407 stress 0.03501054 
## ... Procrustes: rmse 0.0002060033  max resid 0.0004256357 
## ... Similar to previous best
## Run 408 stress 0.04319061 
## Run 409 stress 0.03635601 
## Run 410 stress 0.03501043 
## ... Procrustes: rmse 2.682207e-05  max resid 6.055095e-05 
## ... Similar to previous best
## Run 411 stress 0.2136001 
## Run 412 stress 0.03635608 
## Run 413 stress 0.03635602 
## Run 414 stress 0.03501043 
## ... Procrustes: rmse 3.562607e-05  max resid 7.95033e-05 
## ... Similar to previous best
## Run 415 stress 0.03635606 
## Run 416 stress 0.04319061 
## Run 417 stress 0.04319061 
## Run 418 stress 0.04319061 
## Run 419 stress 0.04319061 
## Run 420 stress 0.275539 
## Run 421 stress 0.09269264 
## Run 422 stress 0.03501049 
## ... Procrustes: rmse 0.0001666255  max resid 0.000359075 
## ... Similar to previous best
## Run 423 stress 0.04319061 
## Run 424 stress 0.3083098 
## Run 425 stress 0.04319061 
## Run 426 stress 0.036356 
## Run 427 stress 0.036356 
## Run 428 stress 0.04319061 
## Run 429 stress 0.03501048 
## ... Procrustes: rmse 0.0001453524  max resid 0.0003104537 
## ... Similar to previous best
## Run 430 stress 0.248806 
## Run 431 stress 0.036356 
## Run 432 stress 0.04319061 
## Run 433 stress 0.03635606 
## Run 434 stress 0.2848524 
## Run 435 stress 0.307627 
## Run 436 stress 0.04319061 
## Run 437 stress 0.04319061 
## Run 438 stress 0.04319061 
## Run 439 stress 0.09269267 
## Run 440 stress 0.04319061 
## Run 441 stress 0.03635605 
## Run 442 stress 0.04319061 
## Run 443 stress 0.09815918 
## Run 444 stress 0.03501043 
## ... Procrustes: rmse 5.451807e-05  max resid 0.0001194316 
## ... Similar to previous best
## Run 445 stress 0.03501043 
## ... Procrustes: rmse 5.406532e-05  max resid 0.0001177602 
## ... Similar to previous best
## Run 446 stress 0.03501047 
## ... Procrustes: rmse 0.0001293461  max resid 0.000280983 
## ... Similar to previous best
## Run 447 stress 0.03635599 
## Run 448 stress 0.0350105 
## ... Procrustes: rmse 0.0001722491  max resid 0.0003693096 
## ... Similar to previous best
## Run 449 stress 0.04319061 
## Run 450 stress 0.03501043 
## ... Procrustes: rmse 3.298071e-05  max resid 7.419126e-05 
## ... Similar to previous best
## Run 451 stress 0.03501046 
## ... Procrustes: rmse 0.0001178729  max resid 0.0002589419 
## ... Similar to previous best
## Run 452 stress 0.03501048 
## ... Procrustes: rmse 0.0001499288  max resid 0.0003189551 
## ... Similar to previous best
## Run 453 stress 0.04319061 
## Run 454 stress 0.03635602 
## Run 455 stress 0.248806 
## Run 456 stress 0.03501043 
## ... Procrustes: rmse 3.410779e-05  max resid 7.636095e-05 
## ... Similar to previous best
## Run 457 stress 0.04319061 
## Run 458 stress 0.04319061 
## Run 459 stress 0.04319061 
## Run 460 stress 0.2478961 
## Run 461 stress 0.03635603 
## Run 462 stress 0.04319061 
## Run 463 stress 0.2842805 
## Run 464 stress 0.03635606 
## Run 465 stress 0.03635603 
## Run 466 stress 0.03501043 
## ... Procrustes: rmse 5.215339e-05  max resid 0.0001145173 
## ... Similar to previous best
## Run 467 stress 0.2478961 
## Run 468 stress 0.04319061 
## Run 469 stress 0.03635606 
## Run 470 stress 0.04319061 
## Run 471 stress 0.04319061 
## Run 472 stress 0.04319061 
## Run 473 stress 0.03501044 
## ... Procrustes: rmse 6.841948e-05  max resid 0.000147918 
## ... Similar to previous best
## Run 474 stress 0.03501044 
## ... Procrustes: rmse 7.903334e-05  max resid 0.0001712696 
## ... Similar to previous best
## Run 475 stress 0.2136001 
## Run 476 stress 0.04319061 
## Run 477 stress 0.2848516 
## Run 478 stress 0.03501044 
## ... Procrustes: rmse 7.480763e-05  max resid 0.0001615267 
## ... Similar to previous best
## Run 479 stress 0.03635605 
## Run 480 stress 0.09269265 
## Run 481 stress 0.03501043 
## ... Procrustes: rmse 4.102447e-05  max resid 9.247398e-05 
## ... Similar to previous best
## Run 482 stress 0.04319061 
## Run 483 stress 0.3083098 
## Run 484 stress 0.04319061 
## Run 485 stress 0.03635601 
## Run 486 stress 0.03501046 
## ... Procrustes: rmse 0.0001214243  max resid 0.0002501435 
## ... Similar to previous best
## Run 487 stress 0.03501048 
## ... Procrustes: rmse 0.0001518842  max resid 0.0003123806 
## ... Similar to previous best
## Run 488 stress 0.04319061 
## Run 489 stress 0.04319061 
## Run 490 stress 0.04319061 
## Run 491 stress 0.036356 
## Run 492 stress 0.03635608 
## Run 493 stress 0.04319061 
## Run 494 stress 0.03501048 
## ... Procrustes: rmse 0.000158258  max resid 0.0003257683 
## ... Similar to previous best
## Run 495 stress 0.03501042 
## ... New best solution
## ... Procrustes: rmse 1.351217e-05  max resid 1.975856e-05 
## ... Similar to previous best
## Run 496 stress 0.03635604 
## Run 497 stress 0.3120129 
## Run 498 stress 0.285216 
## Run 499 stress 0.2532191 
## Run 500 stress 0.2852167 
## *** Best solution repeated 1 times
### Environmental
# All sites 
fde_NMDS <- metaMDS(fde_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.03296713 
## Run 1 stress 0.03296713 
## ... Procrustes: rmse 1.907549e-05  max resid 4.00218e-05 
## ... Similar to previous best
## Run 2 stress 0.03724044 
## Run 3 stress 0.03296715 
## ... Procrustes: rmse 1.141914e-05  max resid 2.953158e-05 
## ... Similar to previous best
## Run 4 stress 0.03422101 
## Run 5 stress 0.03422105 
## Run 6 stress 0.03296713 
## ... New best solution
## ... Procrustes: rmse 5.261017e-06  max resid 1.73118e-05 
## ... Similar to previous best
## Run 7 stress 0.03708306 
## Run 8 stress 0.034221 
## Run 9 stress 0.03708304 
## Run 10 stress 0.03443753 
## Run 11 stress 0.03564251 
## Run 12 stress 0.03480971 
## Run 13 stress 0.03484036 
## Run 14 stress 0.03545238 
## Run 15 stress 0.03724044 
## Run 16 stress 0.03708308 
## Run 17 stress 0.03296713 
## ... Procrustes: rmse 3.830453e-06  max resid 7.708666e-06 
## ... Similar to previous best
## Run 18 stress 0.03545235 
## Run 19 stress 0.03422103 
## Run 20 stress 0.03443743 
## Run 21 stress 0.034221 
## Run 22 stress 0.03564254 
## Run 23 stress 0.03422102 
## Run 24 stress 0.03545237 
## Run 25 stress 0.03545244 
## Run 26 stress 0.03443744 
## Run 27 stress 0.03724055 
## Run 28 stress 0.03724045 
## Run 29 stress 0.03296714 
## ... Procrustes: rmse 9.710681e-06  max resid 2.72518e-05 
## ... Similar to previous best
## Run 30 stress 0.03296713 
## ... Procrustes: rmse 7.774316e-06  max resid 2.291805e-05 
## ... Similar to previous best
## Run 31 stress 0.03296714 
## ... Procrustes: rmse 2.385951e-05  max resid 8.604418e-05 
## ... Similar to previous best
## Run 32 stress 0.03296714 
## ... Procrustes: rmse 1.767947e-05  max resid 3.798646e-05 
## ... Similar to previous best
## Run 33 stress 0.03480971 
## Run 34 stress 0.03545235 
## Run 35 stress 0.03423183 
## Run 36 stress 0.03296713 
## ... Procrustes: rmse 7.346113e-06  max resid 1.556303e-05 
## ... Similar to previous best
## Run 37 stress 0.03484036 
## Run 38 stress 0.3652987 
## Run 39 stress 0.03443755 
## Run 40 stress 0.03296713 
## ... Procrustes: rmse 5.360139e-06  max resid 1.761849e-05 
## ... Similar to previous best
## Run 41 stress 0.03708302 
## Run 42 stress 0.03724052 
## Run 43 stress 0.03708301 
## Run 44 stress 0.03708303 
## Run 45 stress 0.03544947 
## Run 46 stress 0.0354495 
## Run 47 stress 0.03296713 
## ... Procrustes: rmse 8.560616e-06  max resid 2.09116e-05 
## ... Similar to previous best
## Run 48 stress 0.03708303 
## Run 49 stress 0.03422107 
## Run 50 stress 0.03544951 
## Run 51 stress 0.03423183 
## Run 52 stress 0.03480972 
## Run 53 stress 0.03427828 
## Run 54 stress 0.03480971 
## Run 55 stress 0.03296713 
## ... Procrustes: rmse 8.138829e-06  max resid 2.921585e-05 
## ... Similar to previous best
## Run 56 stress 0.03545244 
## Run 57 stress 0.03422276 
## Run 58 stress 0.03544948 
## Run 59 stress 0.03480973 
## Run 60 stress 0.03564256 
## Run 61 stress 0.03443758 
## Run 62 stress 0.03545242 
## Run 63 stress 0.03564252 
## Run 64 stress 0.03708294 
## Run 65 stress 0.03443746 
## Run 66 stress 0.03423188 
## Run 67 stress 0.03427828 
## Run 68 stress 0.03480971 
## Run 69 stress 0.03724048 
## Run 70 stress 0.03564252 
## Run 71 stress 0.03423183 
## Run 72 stress 0.03545235 
## Run 73 stress 0.03427828 
## Run 74 stress 0.03724052 
## Run 75 stress 0.03296714 
## ... Procrustes: rmse 2.353005e-05  max resid 8.596168e-05 
## ... Similar to previous best
## Run 76 stress 0.03708307 
## Run 77 stress 0.034221 
## Run 78 stress 0.2235732 
## Run 79 stress 0.0342211 
## Run 80 stress 0.0356425 
## Run 81 stress 0.03545241 
## Run 82 stress 0.03296713 
## ... Procrustes: rmse 4.206386e-06  max resid 1.349224e-05 
## ... Similar to previous best
## Run 83 stress 0.03296713 
## ... Procrustes: rmse 2.94246e-06  max resid 5.906829e-06 
## ... Similar to previous best
## Run 84 stress 0.03296714 
## ... Procrustes: rmse 2.798693e-05  max resid 0.0001022342 
## ... Similar to previous best
## Run 85 stress 0.03564252 
## Run 86 stress 0.2235948 
## Run 87 stress 0.03480972 
## Run 88 stress 0.03427828 
## Run 89 stress 0.03724063 
## Run 90 stress 0.03724049 
## Run 91 stress 0.03545239 
## Run 92 stress 0.0356425 
## Run 93 stress 0.03296713 
## ... Procrustes: rmse 1.042345e-05  max resid 3.780576e-05 
## ... Similar to previous best
## Run 94 stress 0.03296713 
## ... Procrustes: rmse 1.168155e-05  max resid 4.313536e-05 
## ... Similar to previous best
## Run 95 stress 0.03423184 
## Run 96 stress 0.03564253 
## Run 97 stress 0.03423183 
## Run 98 stress 0.03724051 
## Run 99 stress 0.03480974 
## Run 100 stress 0.03427828 
## Run 101 stress 0.03296713 
## ... Procrustes: rmse 9.168161e-06  max resid 3.213885e-05 
## ... Similar to previous best
## Run 102 stress 0.03296713 
## ... Procrustes: rmse 7.586881e-06  max resid 2.703726e-05 
## ... Similar to previous best
## Run 103 stress 0.03296713 
## ... Procrustes: rmse 5.818605e-06  max resid 1.318908e-05 
## ... Similar to previous best
## Run 104 stress 0.03708306 
## Run 105 stress 0.03724058 
## Run 106 stress 0.03422094 
## Run 107 stress 0.03443731 
## Run 108 stress 0.03422102 
## Run 109 stress 0.03427828 
## Run 110 stress 0.03296713 
## ... Procrustes: rmse 9.580146e-06  max resid 1.716584e-05 
## ... Similar to previous best
## Run 111 stress 0.03423183 
## Run 112 stress 0.03480974 
## Run 113 stress 0.03724063 
## Run 114 stress 0.03564252 
## Run 115 stress 0.03296713 
## ... Procrustes: rmse 1.017575e-05  max resid 3.710206e-05 
## ... Similar to previous best
## Run 116 stress 0.03564257 
## Run 117 stress 0.2235948 
## Run 118 stress 0.03422099 
## Run 119 stress 0.03480972 
## Run 120 stress 0.03708305 
## Run 121 stress 0.03422096 
## Run 122 stress 0.03564251 
## Run 123 stress 0.03564256 
## Run 124 stress 0.03296714 
## ... Procrustes: rmse 3.062309e-05  max resid 0.0001130777 
## ... Similar to previous best
## Run 125 stress 0.03423191 
## Run 126 stress 0.2235814 
## Run 127 stress 0.03443757 
## Run 128 stress 0.0342211 
## Run 129 stress 0.03724054 
## Run 130 stress 0.03296713 
## ... Procrustes: rmse 8.738582e-06  max resid 3.203333e-05 
## ... Similar to previous best
## Run 131 stress 0.03564251 
## Run 132 stress 0.03296713 
## ... Procrustes: rmse 7.421685e-06  max resid 1.729075e-05 
## ... Similar to previous best
## Run 133 stress 0.03427828 
## Run 134 stress 0.03724051 
## Run 135 stress 0.03427828 
## Run 136 stress 0.03296713 
## ... New best solution
## ... Procrustes: rmse 3.948265e-06  max resid 8.241697e-06 
## ... Similar to previous best
## Run 137 stress 0.03443756 
## Run 138 stress 0.03422097 
## Run 139 stress 0.03480973 
## Run 140 stress 0.03443748 
## Run 141 stress 0.03545237 
## Run 142 stress 0.03545243 
## Run 143 stress 0.03423183 
## Run 144 stress 0.03296713 
## ... Procrustes: rmse 1.111833e-05  max resid 4.210203e-05 
## ... Similar to previous best
## Run 145 stress 0.03545237 
## Run 146 stress 0.03427828 
## Run 147 stress 0.03296713 
## ... Procrustes: rmse 1.512847e-05  max resid 4.955413e-05 
## ... Similar to previous best
## Run 148 stress 0.03423184 
## Run 149 stress 0.03708305 
## Run 150 stress 0.03443759 
## Run 151 stress 0.03544946 
## Run 152 stress 0.03484036 
## Run 153 stress 0.03423184 
## Run 154 stress 0.03422102 
## Run 155 stress 0.03480971 
## Run 156 stress 0.03545241 
## Run 157 stress 0.03423184 
## Run 158 stress 0.03423184 
## Run 159 stress 0.03423183 
## Run 160 stress 0.03545242 
## Run 161 stress 0.0372405 
## Run 162 stress 0.03427829 
## Run 163 stress 0.03480972 
## Run 164 stress 0.03564253 
## Run 165 stress 0.03724056 
## Run 166 stress 0.0372853 
## Run 167 stress 0.03296713 
## ... Procrustes: rmse 9.920852e-06  max resid 3.399849e-05 
## ... Similar to previous best
## Run 168 stress 0.03545237 
## Run 169 stress 0.03545239 
## Run 170 stress 0.03480973 
## Run 171 stress 0.03296713 
## ... Procrustes: rmse 7.002684e-06  max resid 2.528511e-05 
## ... Similar to previous best
## Run 172 stress 0.03545239 
## Run 173 stress 0.03708306 
## Run 174 stress 0.03708305 
## Run 175 stress 0.03708308 
## Run 176 stress 0.03423051 
## Run 177 stress 0.03423183 
## Run 178 stress 0.03423193 
## Run 179 stress 0.03545236 
## Run 180 stress 0.03564252 
## Run 181 stress 0.03708301 
## Run 182 stress 0.03422105 
## Run 183 stress 0.03564253 
## Run 184 stress 0.03422104 
## Run 185 stress 0.03423183 
## Run 186 stress 0.03484036 
## Run 187 stress 0.03427828 
## Run 188 stress 0.03296713 
## ... Procrustes: rmse 1.06261e-05  max resid 2.749804e-05 
## ... Similar to previous best
## Run 189 stress 0.03484039 
## Run 190 stress 0.03443727 
## Run 191 stress 0.03424059 
## Run 192 stress 0.037083 
## Run 193 stress 0.03422098 
## Run 194 stress 0.03564251 
## Run 195 stress 0.03545235 
## Run 196 stress 0.03296713 
## ... Procrustes: rmse 1.401644e-05  max resid 5.057487e-05 
## ... Similar to previous best
## Run 197 stress 0.03423184 
## Run 198 stress 0.03564251 
## Run 199 stress 0.03296713 
## ... Procrustes: rmse 5.878955e-06  max resid 1.87326e-05 
## ... Similar to previous best
## Run 200 stress 0.03484039 
## Run 201 stress 0.03422099 
## Run 202 stress 0.03708306 
## Run 203 stress 0.03484036 
## Run 204 stress 0.03422095 
## Run 205 stress 0.037083 
## Run 206 stress 0.03443749 
## Run 207 stress 0.03545241 
## Run 208 stress 0.03708312 
## Run 209 stress 0.03545237 
## Run 210 stress 0.03545235 
## Run 211 stress 0.03422107 
## Run 212 stress 0.03296714 
## ... Procrustes: rmse 7.678267e-06  max resid 2.298648e-05 
## ... Similar to previous best
## Run 213 stress 0.03443757 
## Run 214 stress 0.03545242 
## Run 215 stress 0.03422097 
## Run 216 stress 0.03423184 
## Run 217 stress 0.03443763 
## Run 218 stress 0.03480971 
## Run 219 stress 0.03422099 
## Run 220 stress 0.03564251 
## Run 221 stress 0.03708294 
## Run 222 stress 0.03443748 
## Run 223 stress 0.03423183 
## Run 224 stress 0.03480971 
## Run 225 stress 0.03422106 
## Run 226 stress 0.03423194 
## Run 227 stress 0.03724053 
## Run 228 stress 0.03296714 
## ... Procrustes: rmse 7.21663e-06  max resid 2.002305e-05 
## ... Similar to previous best
## Run 229 stress 0.03484038 
## Run 230 stress 0.03708305 
## Run 231 stress 0.03484039 
## Run 232 stress 0.03296713 
## ... Procrustes: rmse 3.738838e-06  max resid 1.325509e-05 
## ... Similar to previous best
## Run 233 stress 0.03427828 
## Run 234 stress 0.03422102 
## Run 235 stress 0.03427828 
## Run 236 stress 0.03427828 
## Run 237 stress 0.03296713 
## ... Procrustes: rmse 5.657311e-06  max resid 1.333182e-05 
## ... Similar to previous best
## Run 238 stress 0.03484038 
## Run 239 stress 0.03724051 
## Run 240 stress 0.03480971 
## Run 241 stress 0.3698507 
## Run 242 stress 0.03422099 
## Run 243 stress 0.03564254 
## Run 244 stress 0.03296714 
## ... Procrustes: rmse 2.570388e-05  max resid 9.039962e-05 
## ... Similar to previous best
## Run 245 stress 0.03443745 
## Run 246 stress 0.03724057 
## Run 247 stress 0.03422101 
## Run 248 stress 0.03708299 
## Run 249 stress 0.03422102 
## Run 250 stress 0.03708307 
## Run 251 stress 0.03564254 
## Run 252 stress 0.03724057 
## Run 253 stress 0.03296713 
## ... Procrustes: rmse 5.369672e-06  max resid 1.144834e-05 
## ... Similar to previous best
## Run 254 stress 0.03427829 
## Run 255 stress 0.3744253 
## Run 256 stress 0.03296713 
## ... Procrustes: rmse 1.080954e-05  max resid 3.955717e-05 
## ... Similar to previous best
## Run 257 stress 0.03545239 
## Run 258 stress 0.03423184 
## Run 259 stress 0.03422105 
## Run 260 stress 0.03443729 
## Run 261 stress 0.03422105 
## Run 262 stress 0.0356425 
## Run 263 stress 0.03296713 
## ... Procrustes: rmse 7.302044e-06  max resid 2.390337e-05 
## ... Similar to previous best
## Run 264 stress 0.0354524 
## Run 265 stress 0.03296713 
## ... Procrustes: rmse 6.237813e-06  max resid 1.138358e-05 
## ... Similar to previous best
## Run 266 stress 0.03296713 
## ... Procrustes: rmse 1.02732e-05  max resid 3.881942e-05 
## ... Similar to previous best
## Run 267 stress 0.03564252 
## Run 268 stress 0.03564251 
## Run 269 stress 0.03296713 
## ... Procrustes: rmse 2.102512e-05  max resid 7.468904e-05 
## ... Similar to previous best
## Run 270 stress 0.03296714 
## ... Procrustes: rmse 9.223653e-06  max resid 1.430425e-05 
## ... Similar to previous best
## Run 271 stress 0.03422104 
## Run 272 stress 0.03296714 
## ... Procrustes: rmse 3.002894e-05  max resid 0.0001077277 
## ... Similar to previous best
## Run 273 stress 0.0342406 
## Run 274 stress 0.03564251 
## Run 275 stress 0.03724056 
## Run 276 stress 0.03480971 
## Run 277 stress 0.0356425 
## Run 278 stress 0.03480972 
## Run 279 stress 0.034221 
## Run 280 stress 0.03427828 
## Run 281 stress 0.03708296 
## Run 282 stress 0.03427828 
## Run 283 stress 0.03708306 
## Run 284 stress 0.03296714 
## ... Procrustes: rmse 2.287885e-05  max resid 4.475796e-05 
## ... Similar to previous best
## Run 285 stress 0.03484037 
## Run 286 stress 0.03724051 
## Run 287 stress 0.03422107 
## Run 288 stress 0.03545236 
## Run 289 stress 0.03296714 
## ... Procrustes: rmse 2.931829e-05  max resid 0.0001047991 
## ... Similar to previous best
## Run 290 stress 0.03480971 
## Run 291 stress 0.03296713 
## ... Procrustes: rmse 2.125755e-05  max resid 7.741744e-05 
## ... Similar to previous best
## Run 292 stress 0.03296713 
## ... Procrustes: rmse 5.610033e-06  max resid 1.160889e-05 
## ... Similar to previous best
## Run 293 stress 0.03708294 
## Run 294 stress 0.03427828 
## Run 295 stress 0.03427828 
## Run 296 stress 0.03708295 
## Run 297 stress 0.03296713 
## ... Procrustes: rmse 1.482107e-05  max resid 2.564079e-05 
## ... Similar to previous best
## Run 298 stress 0.03564251 
## Run 299 stress 0.03422094 
## Run 300 stress 0.03545247 
## Run 301 stress 0.0356425 
## Run 302 stress 0.03724052 
## Run 303 stress 0.03427828 
## Run 304 stress 0.03296713 
## ... Procrustes: rmse 1.505478e-05  max resid 5.509999e-05 
## ... Similar to previous best
## Run 305 stress 0.0356425 
## Run 306 stress 0.03564253 
## Run 307 stress 0.03564251 
## Run 308 stress 0.03708307 
## Run 309 stress 0.03564257 
## Run 310 stress 0.03724058 
## Run 311 stress 0.03724052 
## Run 312 stress 0.03427828 
## Run 313 stress 0.03296713 
## ... Procrustes: rmse 1.204038e-05  max resid 3.166404e-05 
## ... Similar to previous best
## Run 314 stress 0.03724059 
## Run 315 stress 0.03545239 
## Run 316 stress 0.03423184 
## Run 317 stress 0.03296713 
## ... Procrustes: rmse 7.379693e-06  max resid 1.999756e-05 
## ... Similar to previous best
## Run 318 stress 0.03564254 
## Run 319 stress 0.03296713 
## ... Procrustes: rmse 9.769875e-06  max resid 2.793193e-05 
## ... Similar to previous best
## Run 320 stress 0.03724055 
## Run 321 stress 0.03427828 
## Run 322 stress 0.03484038 
## Run 323 stress 0.03708305 
## Run 324 stress 0.03296714 
## ... Procrustes: rmse 2.073314e-05  max resid 3.709042e-05 
## ... Similar to previous best
## Run 325 stress 0.0372405 
## Run 326 stress 0.03564251 
## Run 327 stress 0.03296713 
## ... Procrustes: rmse 1.525716e-05  max resid 2.781495e-05 
## ... Similar to previous best
## Run 328 stress 0.03296713 
## ... Procrustes: rmse 1.215961e-05  max resid 2.430928e-05 
## ... Similar to previous best
## Run 329 stress 0.03708301 
## Run 330 stress 0.03422105 
## Run 331 stress 0.034221 
## Run 332 stress 0.03296713 
## ... New best solution
## ... Procrustes: rmse 1.861136e-06  max resid 3.620217e-06 
## ... Similar to previous best
## Run 333 stress 0.03296713 
## ... Procrustes: rmse 1.587195e-05  max resid 5.842815e-05 
## ... Similar to previous best
## Run 334 stress 0.03708296 
## Run 335 stress 0.03443747 
## Run 336 stress 0.03545239 
## Run 337 stress 0.03564253 
## Run 338 stress 0.0354495 
## Run 339 stress 0.03564253 
## Run 340 stress 0.03296713 
## ... New best solution
## ... Procrustes: rmse 2.30966e-06  max resid 5.64709e-06 
## ... Similar to previous best
## Run 341 stress 0.03296714 
## ... Procrustes: rmse 3.297738e-05  max resid 0.000114789 
## ... Similar to previous best
## Run 342 stress 0.03443759 
## Run 343 stress 0.03708295 
## Run 344 stress 0.03423184 
## Run 345 stress 0.03427828 
## Run 346 stress 0.03422094 
## Run 347 stress 0.03296713 
## ... Procrustes: rmse 9.891999e-06  max resid 3.640008e-05 
## ... Similar to previous best
## Run 348 stress 0.03564252 
## Run 349 stress 0.03544947 
## Run 350 stress 0.03296714 
## ... Procrustes: rmse 2.449066e-05  max resid 8.783924e-05 
## ... Similar to previous best
## Run 351 stress 0.03296713 
## ... Procrustes: rmse 4.370043e-06  max resid 1.472599e-05 
## ... Similar to previous best
## Run 352 stress 0.03443731 
## Run 353 stress 0.03296713 
## ... Procrustes: rmse 6.016702e-06  max resid 1.711933e-05 
## ... Similar to previous best
## Run 354 stress 0.03484036 
## Run 355 stress 0.03296713 
## ... Procrustes: rmse 1.862625e-05  max resid 6.587708e-05 
## ... Similar to previous best
## Run 356 stress 0.034221 
## Run 357 stress 0.0354524 
## Run 358 stress 0.03296713 
## ... Procrustes: rmse 1.865807e-05  max resid 6.662045e-05 
## ... Similar to previous best
## Run 359 stress 0.03724058 
## Run 360 stress 0.03544949 
## Run 361 stress 0.03545235 
## Run 362 stress 0.0372405 
## Run 363 stress 0.03724053 
## Run 364 stress 0.03296714 
## ... Procrustes: rmse 1.961776e-05  max resid 6.880823e-05 
## ... Similar to previous best
## Run 365 stress 0.03296713 
## ... Procrustes: rmse 1.669315e-05  max resid 5.960795e-05 
## ... Similar to previous best
## Run 366 stress 0.03443763 
## Run 367 stress 0.03564254 
## Run 368 stress 0.03443735 
## Run 369 stress 0.03427828 
## Run 370 stress 0.03296713 
## ... Procrustes: rmse 3.689836e-06  max resid 1.128596e-05 
## ... Similar to previous best
## Run 371 stress 0.034221 
## Run 372 stress 0.03296713 
## ... Procrustes: rmse 1.024774e-05  max resid 3.748057e-05 
## ... Similar to previous best
## Run 373 stress 0.2235948 
## Run 374 stress 0.03422103 
## Run 375 stress 0.03708302 
## Run 376 stress 0.03724056 
## Run 377 stress 0.0354524 
## Run 378 stress 0.03443745 
## Run 379 stress 0.03564254 
## Run 380 stress 0.03296713 
## ... Procrustes: rmse 7.808232e-06  max resid 2.817177e-05 
## ... Similar to previous best
## Run 381 stress 0.03480972 
## Run 382 stress 0.03296713 
## ... Procrustes: rmse 1.131394e-05  max resid 3.728231e-05 
## ... Similar to previous best
## Run 383 stress 0.03443763 
## Run 384 stress 0.0356425 
## Run 385 stress 0.03423183 
## Run 386 stress 0.03443765 
## Run 387 stress 0.03480971 
## Run 388 stress 0.03544948 
## Run 389 stress 0.03296713 
## ... Procrustes: rmse 1.080992e-05  max resid 2.368229e-05 
## ... Similar to previous best
## Run 390 stress 0.03564251 
## Run 391 stress 0.03443761 
## Run 392 stress 0.03545236 
## Run 393 stress 0.03484038 
## Run 394 stress 0.03708303 
## Run 395 stress 0.03724051 
## Run 396 stress 0.03296713 
## ... Procrustes: rmse 2.991751e-06  max resid 5.909905e-06 
## ... Similar to previous best
## Run 397 stress 0.03564251 
## Run 398 stress 0.03480972 
## Run 399 stress 0.03427828 
## Run 400 stress 0.03724058 
## Run 401 stress 0.03564252 
## Run 402 stress 0.03480971 
## Run 403 stress 0.03708299 
## Run 404 stress 0.03423183 
## Run 405 stress 0.03480971 
## Run 406 stress 0.03564252 
## Run 407 stress 0.0356425 
## Run 408 stress 0.03427828 
## Run 409 stress 0.03724054 
## Run 410 stress 0.03422104 
## Run 411 stress 0.03724055 
## Run 412 stress 0.03296713 
## ... Procrustes: rmse 8.346184e-06  max resid 3.024615e-05 
## ... Similar to previous best
## Run 413 stress 0.03484038 
## Run 414 stress 0.03296713 
## ... Procrustes: rmse 1.552546e-06  max resid 3.400919e-06 
## ... Similar to previous best
## Run 415 stress 0.03564251 
## Run 416 stress 0.03422096 
## Run 417 stress 0.03708302 
## Run 418 stress 0.03724059 
## Run 419 stress 0.03427828 
## Run 420 stress 0.03708303 
## Run 421 stress 0.03296713 
## ... Procrustes: rmse 2.065872e-05  max resid 7.524794e-05 
## ... Similar to previous best
## Run 422 stress 0.03443762 
## Run 423 stress 0.03427828 
## Run 424 stress 0.03708295 
## Run 425 stress 0.03427828 
## Run 426 stress 0.03564256 
## Run 427 stress 0.03424023 
## Run 428 stress 0.03708295 
## Run 429 stress 0.03443743 
## Run 430 stress 0.03296714 
## ... Procrustes: rmse 3.160772e-05  max resid 0.0001104997 
## ... Similar to previous best
## Run 431 stress 0.03545242 
## Run 432 stress 0.03427828 
## Run 433 stress 0.03545238 
## Run 434 stress 0.03544949 
## Run 435 stress 0.03724057 
## Run 436 stress 0.0354524 
## Run 437 stress 0.03484039 
## Run 438 stress 0.03296713 
## ... Procrustes: rmse 2.108803e-05  max resid 7.787488e-05 
## ... Similar to previous best
## Run 439 stress 0.03296714 
## ... Procrustes: rmse 3.588992e-05  max resid 0.0001295463 
## ... Similar to previous best
## Run 440 stress 0.03564252 
## Run 441 stress 0.0354495 
## Run 442 stress 0.03564251 
## Run 443 stress 0.3744249 
## Run 444 stress 0.03443751 
## Run 445 stress 0.03708301 
## Run 446 stress 0.03724048 
## Run 447 stress 0.03296713 
## ... Procrustes: rmse 1.812103e-05  max resid 6.685008e-05 
## ... Similar to previous best
## Run 448 stress 0.03708306 
## Run 449 stress 0.03427829 
## Run 450 stress 0.03564255 
## Run 451 stress 0.03427828 
## Run 452 stress 0.03296713 
## ... Procrustes: rmse 1.606404e-06  max resid 3.196574e-06 
## ... Similar to previous best
## Run 453 stress 0.03296713 
## ... Procrustes: rmse 9.771685e-06  max resid 2.689528e-05 
## ... Similar to previous best
## Run 454 stress 0.03296713 
## ... Procrustes: rmse 3.600051e-06  max resid 1.209361e-05 
## ... Similar to previous best
## Run 455 stress 0.03545236 
## Run 456 stress 0.2234926 
## Run 457 stress 0.03480971 
## Run 458 stress 0.03427828 
## Run 459 stress 0.03545243 
## Run 460 stress 0.03708304 
## Run 461 stress 0.03544948 
## Run 462 stress 0.03422104 
## Run 463 stress 0.03564255 
## Run 464 stress 0.03724053 
## Run 465 stress 0.03443758 
## Run 466 stress 0.03422102 
## Run 467 stress 0.03422093 
## Run 468 stress 0.03422097 
## Run 469 stress 0.03296713 
## ... Procrustes: rmse 1.309563e-05  max resid 4.735727e-05 
## ... Similar to previous best
## Run 470 stress 0.03422097 
## Run 471 stress 0.03423183 
## Run 472 stress 0.03480972 
## Run 473 stress 0.03296713 
## ... Procrustes: rmse 3.733751e-06  max resid 1.235055e-05 
## ... Similar to previous best
## Run 474 stress 0.03296713 
## ... Procrustes: rmse 8.216041e-06  max resid 2.789103e-05 
## ... Similar to previous best
## Run 475 stress 0.03427828 
## Run 476 stress 0.03296713 
## ... Procrustes: rmse 2.196338e-05  max resid 7.980179e-05 
## ... Similar to previous best
## Run 477 stress 0.03427828 
## Run 478 stress 0.03708304 
## Run 479 stress 0.03423183 
## Run 480 stress 0.03423183 
## Run 481 stress 0.0354524 
## Run 482 stress 0.03422096 
## Run 483 stress 0.03296713 
## ... Procrustes: rmse 1.97447e-05  max resid 7.061356e-05 
## ... Similar to previous best
## Run 484 stress 0.03724053 
## Run 485 stress 0.03724057 
## Run 486 stress 0.03724045 
## Run 487 stress 0.03724062 
## Run 488 stress 0.03423183 
## Run 489 stress 0.03724058 
## Run 490 stress 0.03545243 
## Run 491 stress 0.03724053 
## Run 492 stress 0.03296713 
## ... Procrustes: rmse 7.767999e-06  max resid 1.869961e-05 
## ... Similar to previous best
## Run 493 stress 0.03296713 
## ... Procrustes: rmse 1.456867e-05  max resid 2.758723e-05 
## ... Similar to previous best
## Run 494 stress 0.03708301 
## Run 495 stress 0.03545236 
## Run 496 stress 0.03724045 
## Run 497 stress 0.03296713 
## ... Procrustes: rmse 8.451887e-06  max resid 3.030828e-05 
## ... Similar to previous best
## Run 498 stress 0.03422095 
## Run 499 stress 0.03724048 
## Run 500 stress 0.03564256 
## *** Best solution repeated 34 times
# Mixed and stratified lakes
fdems_NMDS <- metaMDS(fdems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.0297451 
## Run 1 stress 0.03035653 
## Run 2 stress 0.03035657 
## Run 3 stress 0.07130439 
## Run 4 stress 0.07130359 
## Run 5 stress 0.03160269 
## Run 6 stress 0.03035657 
## Run 7 stress 0.02397855 
## ... New best solution
## ... Procrustes: rmse 0.05173291  max resid 0.1309479 
## Run 8 stress 0.02399582 
## ... Procrustes: rmse 0.001304689  max resid 0.003920328 
## ... Similar to previous best
## Run 9 stress 0.02721662 
## Run 10 stress 0.03035929 
## Run 11 stress 0.0272166 
## Run 12 stress 0.02975952 
## Run 13 stress 0.02721658 
## Run 14 stress 0.06123852 
## Run 15 stress 0.02975951 
## Run 16 stress 0.02975956 
## Run 17 stress 0.06085665 
## Run 18 stress 0.03035653 
## Run 19 stress 0.02721812 
## Run 20 stress 0.03035931 
## Run 21 stress 0.02974512 
## Run 22 stress 0.02723717 
## Run 23 stress 0.02721809 
## Run 24 stress 0.03035927 
## Run 25 stress 0.0316293 
## Run 26 stress 0.02397857 
## ... Procrustes: rmse 4.769579e-05  max resid 7.957119e-05 
## ... Similar to previous best
## Run 27 stress 0.02975954 
## Run 28 stress 0.06134243 
## Run 29 stress 0.02975952 
## Run 30 stress 0.02721662 
## Run 31 stress 0.0239959 
## ... Procrustes: rmse 0.001283543  max resid 0.003743496 
## ... Similar to previous best
## Run 32 stress 0.02397857 
## ... Procrustes: rmse 4.986789e-05  max resid 8.066801e-05 
## ... Similar to previous best
## Run 33 stress 0.02975954 
## Run 34 stress 0.03035931 
## Run 35 stress 0.03162922 
## Run 36 stress 0.02975951 
## Run 37 stress 0.0297451 
## Run 38 stress 0.02723719 
## Run 39 stress 0.03160242 
## Run 40 stress 0.02974513 
## Run 41 stress 0.06082268 
## Run 42 stress 0.02721813 
## Run 43 stress 0.02974511 
## Run 44 stress 0.02721816 
## Run 45 stress 0.02397856 
## ... Procrustes: rmse 4.014242e-05  max resid 6.76463e-05 
## ... Similar to previous best
## Run 46 stress 0.06082261 
## Run 47 stress 0.0297595 
## Run 48 stress 0.03035932 
## Run 49 stress 0.0297595 
## Run 50 stress 0.02721657 
## Run 51 stress 0.02721811 
## Run 52 stress 0.02975952 
## Run 53 stress 0.03164964 
## Run 54 stress 0.0272376 
## Run 55 stress 0.02721655 
## Run 56 stress 0.02975952 
## Run 57 stress 0.03035927 
## Run 58 stress 0.06124243 
## Run 59 stress 0.06085708 
## Run 60 stress 0.02974512 
## Run 61 stress 0.02975953 
## Run 62 stress 0.03160262 
## Run 63 stress 0.02721659 
## Run 64 stress 0.02975951 
## Run 65 stress 0.03162198 
## Run 66 stress 0.02974511 
## Run 67 stress 0.0239959 
## ... Procrustes: rmse 0.001331423  max resid 0.00408289 
## ... Similar to previous best
## Run 68 stress 0.06748642 
## Run 69 stress 0.02721663 
## Run 70 stress 0.03035653 
## Run 71 stress 0.02975953 
## Run 72 stress 0.02974513 
## Run 73 stress 0.03160263 
## Run 74 stress 0.0297451 
## Run 75 stress 0.07130454 
## Run 76 stress 0.06128621 
## Run 77 stress 0.02975951 
## Run 78 stress 0.06082273 
## Run 79 stress 0.06082261 
## Run 80 stress 0.02721662 
## Run 81 stress 0.02397863 
## ... Procrustes: rmse 9.379377e-05  max resid 0.0001602513 
## ... Similar to previous best
## Run 82 stress 0.03164952 
## Run 83 stress 0.02721662 
## Run 84 stress 0.03162904 
## Run 85 stress 0.02721816 
## Run 86 stress 0.03162956 
## Run 87 stress 0.03035934 
## Run 88 stress 0.02721817 
## Run 89 stress 0.03162195 
## Run 90 stress 0.03035649 
## Run 91 stress 0.03035649 
## Run 92 stress 0.06128627 
## Run 93 stress 0.02721661 
## Run 94 stress 0.06085706 
## Run 95 stress 0.03035654 
## Run 96 stress 0.02975951 
## Run 97 stress 0.03162929 
## Run 98 stress 0.02723724 
## Run 99 stress 0.06082263 
## Run 100 stress 0.03162911 
## Run 101 stress 0.06134219 
## Run 102 stress 0.06085658 
## Run 103 stress 0.03164941 
## Run 104 stress 0.03162199 
## Run 105 stress 0.03035924 
## Run 106 stress 0.02975951 
## Run 107 stress 0.02721813 
## Run 108 stress 0.02975951 
## Run 109 stress 0.03162195 
## Run 110 stress 0.06082269 
## Run 111 stress 0.03035661 
## Run 112 stress 0.03035928 
## Run 113 stress 0.02975952 
## Run 114 stress 0.0316025 
## Run 115 stress 0.06127787 
## Run 116 stress 0.0297451 
## Run 117 stress 0.03162933 
## Run 118 stress 0.02975953 
## Run 119 stress 0.03162202 
## Run 120 stress 0.06749076 
## Run 121 stress 0.3594425 
## Run 122 stress 0.02721816 
## Run 123 stress 0.02975952 
## Run 124 stress 0.03162908 
## Run 125 stress 0.06128627 
## Run 126 stress 0.03160243 
## Run 127 stress 0.07130443 
## Run 128 stress 0.02399583 
## ... Procrustes: rmse 0.001291088  max resid 0.003820352 
## ... Similar to previous best
## Run 129 stress 0.02721661 
## Run 130 stress 0.02975951 
## Run 131 stress 0.06127795 
## Run 132 stress 0.03162915 
## Run 133 stress 0.0297595 
## Run 134 stress 0.03160268 
## Run 135 stress 0.06082263 
## Run 136 stress 0.02721656 
## Run 137 stress 0.02975951 
## Run 138 stress 0.03040276 
## Run 139 stress 0.0297451 
## Run 140 stress 0.02721813 
## Run 141 stress 0.02397858 
## ... Procrustes: rmse 6.694242e-05  max resid 0.0001142614 
## ... Similar to previous best
## Run 142 stress 0.0303566 
## Run 143 stress 0.0297451 
## Run 144 stress 0.02721654 
## Run 145 stress 0.02974511 
## Run 146 stress 0.06082241 
## Run 147 stress 0.06085712 
## Run 148 stress 0.03035651 
## Run 149 stress 0.02721658 
## Run 150 stress 0.06082298 
## Run 151 stress 0.03035654 
## Run 152 stress 0.06145226 
## Run 153 stress 0.03162192 
## Run 154 stress 0.06134236 
## Run 155 stress 0.0297451 
## Run 156 stress 0.0303566 
## Run 157 stress 0.03035926 
## Run 158 stress 0.0272372 
## Run 159 stress 0.02721809 
## Run 160 stress 0.0713034 
## Run 161 stress 0.0239786 
## ... Procrustes: rmse 5.941197e-05  max resid 0.0001018496 
## ... Similar to previous best
## Run 162 stress 0.02721657 
## Run 163 stress 0.07130325 
## Run 164 stress 0.03035928 
## Run 165 stress 0.06128641 
## Run 166 stress 0.03035929 
## Run 167 stress 0.02721817 
## Run 168 stress 0.02975952 
## Run 169 stress 0.03035925 
## Run 170 stress 0.02974512 
## Run 171 stress 0.0297451 
## Run 172 stress 0.0297595 
## Run 173 stress 0.03162193 
## Run 174 stress 0.02399587 
## ... Procrustes: rmse 0.001284805  max resid 0.003756633 
## ... Similar to previous best
## Run 175 stress 0.02721818 
## Run 176 stress 0.03160244 
## Run 177 stress 0.03164948 
## Run 178 stress 0.02975954 
## Run 179 stress 0.02721654 
## Run 180 stress 0.02975952 
## Run 181 stress 0.02399586 
## ... Procrustes: rmse 0.001320904  max resid 0.004025723 
## ... Similar to previous best
## Run 182 stress 0.02721809 
## Run 183 stress 0.03162203 
## Run 184 stress 0.06082277 
## Run 185 stress 0.02974513 
## Run 186 stress 0.03162189 
## Run 187 stress 0.02974513 
## Run 188 stress 0.0297595 
## Run 189 stress 0.03035654 
## Run 190 stress 0.03160266 
## Run 191 stress 0.03162189 
## Run 192 stress 0.03160248 
## Run 193 stress 0.02399589 
## ... Procrustes: rmse 0.001284844  max resid 0.003757523 
## ... Similar to previous best
## Run 194 stress 0.02974511 
## Run 195 stress 0.06748643 
## Run 196 stress 0.03035925 
## Run 197 stress 0.02974514 
## Run 198 stress 0.03162944 
## Run 199 stress 0.03035657 
## Run 200 stress 0.0297451 
## Run 201 stress 0.02723717 
## Run 202 stress 0.0297451 
## Run 203 stress 0.03162933 
## Run 204 stress 0.0303566 
## Run 205 stress 0.02721816 
## Run 206 stress 0.0297451 
## Run 207 stress 0.02974512 
## Run 208 stress 0.02975951 
## Run 209 stress 0.02975952 
## Run 210 stress 0.02397856 
## ... Procrustes: rmse 3.058616e-05  max resid 5.438253e-05 
## ... Similar to previous best
## Run 211 stress 0.03162949 
## Run 212 stress 0.0316026 
## Run 213 stress 0.02975951 
## Run 214 stress 0.03160255 
## Run 215 stress 0.0297451 
## Run 216 stress 0.02975952 
## Run 217 stress 0.06128634 
## Run 218 stress 0.02721809 
## Run 219 stress 0.0297595 
## Run 220 stress 0.03160261 
## Run 221 stress 0.02723726 
## Run 222 stress 0.06082269 
## Run 223 stress 0.03035658 
## Run 224 stress 0.02721656 
## Run 225 stress 0.359111 
## Run 226 stress 0.0297451 
## Run 227 stress 0.02975951 
## Run 228 stress 0.03160252 
## Run 229 stress 0.0297451 
## Run 230 stress 0.02721662 
## Run 231 stress 0.02721815 
## Run 232 stress 0.03035654 
## Run 233 stress 0.0303565 
## Run 234 stress 0.02975951 
## Run 235 stress 0.06128611 
## Run 236 stress 0.06749083 
## Run 237 stress 0.0608568 
## Run 238 stress 0.06128636 
## Run 239 stress 0.02974512 
## Run 240 stress 0.06748191 
## Run 241 stress 0.03160248 
## Run 242 stress 0.02974515 
## Run 243 stress 0.02723753 
## Run 244 stress 0.02975951 
## Run 245 stress 0.02399583 
## ... Procrustes: rmse 0.001315869  max resid 0.003990528 
## ... Similar to previous best
## Run 246 stress 0.03035659 
## Run 247 stress 0.02975952 
## Run 248 stress 0.03160244 
## Run 249 stress 0.02975953 
## Run 250 stress 0.03162197 
## Run 251 stress 0.02399586 
## ... Procrustes: rmse 0.001317246  max resid 0.004001899 
## ... Similar to previous best
## Run 252 stress 0.03164927 
## Run 253 stress 0.06082274 
## Run 254 stress 0.0297595 
## Run 255 stress 0.03163556 
## Run 256 stress 0.0297451 
## Run 257 stress 0.0272182 
## Run 258 stress 0.02974514 
## Run 259 stress 0.03035649 
## Run 260 stress 0.06082307 
## Run 261 stress 0.02974511 
## Run 262 stress 0.0297595 
## Run 263 stress 0.02974511 
## Run 264 stress 0.02723759 
## Run 265 stress 0.03040265 
## Run 266 stress 0.02721657 
## Run 267 stress 0.02975951 
## Run 268 stress 0.03035652 
## Run 269 stress 0.06082272 
## Run 270 stress 0.0316291 
## Run 271 stress 0.0297451 
## Run 272 stress 0.03035653 
## Run 273 stress 0.06749083 
## Run 274 stress 0.03035658 
## Run 275 stress 0.02721811 
## Run 276 stress 0.02974515 
## Run 277 stress 0.0608227 
## Run 278 stress 0.03162941 
## Run 279 stress 0.02399584 
## ... Procrustes: rmse 0.00129615  max resid 0.00388811 
## ... Similar to previous best
## Run 280 stress 0.06749083 
## Run 281 stress 0.02721654 
## Run 282 stress 0.02974511 
## Run 283 stress 0.02975955 
## Run 284 stress 0.03035653 
## Run 285 stress 0.02399583 
## ... Procrustes: rmse 0.001291271  max resid 0.003823031 
## ... Similar to previous best
## Run 286 stress 0.02974511 
## Run 287 stress 0.03035657 
## Run 288 stress 0.03160244 
## Run 289 stress 0.03162928 
## Run 290 stress 0.06749083 
## Run 291 stress 0.03035932 
## Run 292 stress 0.03035937 
## Run 293 stress 0.03160262 
## Run 294 stress 0.03035931 
## Run 295 stress 0.02974513 
## Run 296 stress 0.03162928 
## Run 297 stress 0.02975951 
## Run 298 stress 0.03035653 
## Run 299 stress 0.02721815 
## Run 300 stress 0.03160251 
## Run 301 stress 0.02721654 
## Run 302 stress 0.02975951 
## Run 303 stress 0.0612862 
## Run 304 stress 0.03160257 
## Run 305 stress 0.06085675 
## Run 306 stress 0.03035924 
## Run 307 stress 0.06127786 
## Run 308 stress 0.02397861 
## ... Procrustes: rmse 8.733014e-05  max resid 0.0001505327 
## ... Similar to previous best
## Run 309 stress 0.02399586 
## ... Procrustes: rmse 0.001322317  max resid 0.004032224 
## ... Similar to previous best
## Run 310 stress 0.02975951 
## Run 311 stress 0.02974511 
## Run 312 stress 0.02975951 
## Run 313 stress 0.02975954 
## Run 314 stress 0.06128608 
## Run 315 stress 0.02975954 
## Run 316 stress 0.02975951 
## Run 317 stress 0.0297451 
## Run 318 stress 0.06748642 
## Run 319 stress 0.02975953 
## Run 320 stress 0.02974511 
## Run 321 stress 0.2207036 
## Run 322 stress 0.03035929 
## Run 323 stress 0.02721659 
## Run 324 stress 0.02397861 
## ... Procrustes: rmse 8.455224e-05  max resid 0.000146881 
## ... Similar to previous best
## Run 325 stress 0.03160244 
## Run 326 stress 0.03164942 
## Run 327 stress 0.03162928 
## Run 328 stress 0.02399583 
## ... Procrustes: rmse 0.001311934  max resid 0.003969051 
## ... Similar to previous best
## Run 329 stress 0.0297451 
## Run 330 stress 0.06085715 
## Run 331 stress 0.0612424 
## Run 332 stress 0.02397859 
## ... Procrustes: rmse 4.89619e-05  max resid 8.779031e-05 
## ... Similar to previous best
## Run 333 stress 0.03162938 
## Run 334 stress 0.0239959 
## ... Procrustes: rmse 0.001326848  max resid 0.004060796 
## ... Similar to previous best
## Run 335 stress 0.0297451 
## Run 336 stress 0.0239959 
## ... Procrustes: rmse 0.001327252  max resid 0.004059757 
## ... Similar to previous best
## Run 337 stress 0.02723719 
## Run 338 stress 0.03162188 
## Run 339 stress 0.0272372 
## Run 340 stress 0.03162192 
## Run 341 stress 0.06148371 
## Run 342 stress 0.2207036 
## Run 343 stress 0.06128621 
## Run 344 stress 0.3657371 
## Run 345 stress 0.03035649 
## Run 346 stress 0.02975952 
## Run 347 stress 0.02723725 
## Run 348 stress 0.02723719 
## Run 349 stress 0.02975951 
## Run 350 stress 0.03035659 
## Run 351 stress 0.3657193 
## Run 352 stress 0.03035925 
## Run 353 stress 0.02721654 
## Run 354 stress 0.06085725 
## Run 355 stress 0.03035927 
## Run 356 stress 0.0297451 
## Run 357 stress 0.03035923 
## Run 358 stress 0.02721656 
## Run 359 stress 0.0303593 
## Run 360 stress 0.02723727 
## Run 361 stress 0.06082278 
## Run 362 stress 0.06748644 
## Run 363 stress 0.07130359 
## Run 364 stress 0.0297451 
## Run 365 stress 0.02723719 
## Run 366 stress 0.03035664 
## Run 367 stress 0.03164925 
## Run 368 stress 0.02975955 
## Run 369 stress 0.03035652 
## Run 370 stress 0.02397856 
## ... Procrustes: rmse 2.185698e-05  max resid 3.278464e-05 
## ... Similar to previous best
## Run 371 stress 0.0608227 
## Run 372 stress 0.03162925 
## Run 373 stress 0.02397857 
## ... Procrustes: rmse 5.687665e-05  max resid 9.236317e-05 
## ... Similar to previous best
## Run 374 stress 0.03160251 
## Run 375 stress 0.03162919 
## Run 376 stress 0.06127777 
## Run 377 stress 0.03035932 
## Run 378 stress 0.02721656 
## Run 379 stress 0.02721817 
## Run 380 stress 0.03162194 
## Run 381 stress 0.03160266 
## Run 382 stress 0.03162938 
## Run 383 stress 0.02974512 
## Run 384 stress 0.0297595 
## Run 385 stress 0.02974511 
## Run 386 stress 0.02399585 
## ... Procrustes: rmse 0.001319282  max resid 0.004015311 
## ... Similar to previous best
## Run 387 stress 0.0303594 
## Run 388 stress 0.0297451 
## Run 389 stress 0.02721654 
## Run 390 stress 0.03035928 
## Run 391 stress 0.02721661 
## Run 392 stress 0.03160248 
## Run 393 stress 0.02975951 
## Run 394 stress 0.02721658 
## Run 395 stress 0.02721814 
## Run 396 stress 0.06135757 
## Run 397 stress 0.0608567 
## Run 398 stress 0.02974511 
## Run 399 stress 0.03162922 
## Run 400 stress 0.02721816 
## Run 401 stress 0.03035929 
## Run 402 stress 0.02399583 
## ... Procrustes: rmse 0.001300461  max resid 0.003867587 
## ... Similar to previous best
## Run 403 stress 0.06123858 
## Run 404 stress 0.03035933 
## Run 405 stress 0.03160258 
## Run 406 stress 0.03035933 
## Run 407 stress 0.02974511 
## Run 408 stress 0.02974512 
## Run 409 stress 0.0713049 
## Run 410 stress 0.0316496 
## Run 411 stress 0.03035654 
## Run 412 stress 0.02975951 
## Run 413 stress 0.02975951 
## Run 414 stress 0.02974511 
## Run 415 stress 0.06123871 
## Run 416 stress 0.0272181 
## Run 417 stress 0.0316292 
## Run 418 stress 0.02721815 
## Run 419 stress 0.02399587 
## ... Procrustes: rmse 0.001325575  max resid 0.00405102 
## ... Similar to previous best
## Run 420 stress 0.02975951 
## Run 421 stress 0.03162192 
## Run 422 stress 0.03160246 
## Run 423 stress 0.02723755 
## Run 424 stress 0.02975951 
## Run 425 stress 0.07130362 
## Run 426 stress 0.06085726 
## Run 427 stress 0.0297451 
## Run 428 stress 0.03160256 
## Run 429 stress 0.02974512 
## Run 430 stress 0.03035653 
## Run 431 stress 0.03162919 
## Run 432 stress 0.03035652 
## Run 433 stress 0.03035925 
## Run 434 stress 0.07130372 
## Run 435 stress 0.02723752 
## Run 436 stress 0.06749075 
## Run 437 stress 0.03162938 
## Run 438 stress 0.0303565 
## Run 439 stress 0.06128631 
## Run 440 stress 0.06128605 
## Run 441 stress 0.02974513 
## Run 442 stress 0.03160266 
## Run 443 stress 0.02721655 
## Run 444 stress 0.02721655 
## Run 445 stress 0.03035658 
## Run 446 stress 0.02974511 
## Run 447 stress 0.02721819 
## Run 448 stress 0.03160258 
## Run 449 stress 0.0297451 
## Run 450 stress 0.02723761 
## Run 451 stress 0.02721661 
## Run 452 stress 0.02975952 
## Run 453 stress 0.07130481 
## Run 454 stress 0.03162911 
## Run 455 stress 0.02723752 
## Run 456 stress 0.0303565 
## Run 457 stress 0.02721654 
## Run 458 stress 0.02721815 
## Run 459 stress 0.0272181 
## Run 460 stress 0.02723752 
## Run 461 stress 0.02723754 
## Run 462 stress 0.03035652 
## Run 463 stress 0.0297451 
## Run 464 stress 0.06749083 
## Run 465 stress 0.02975951 
## Run 466 stress 0.03162929 
## Run 467 stress 0.0608228 
## Run 468 stress 0.02721812 
## Run 469 stress 0.03035649 
## Run 470 stress 0.03035651 
## Run 471 stress 0.02974513 
## Run 472 stress 0.02397862 
## ... Procrustes: rmse 7.656742e-05  max resid 0.0001343176 
## ... Similar to previous best
## Run 473 stress 0.03162188 
## Run 474 stress 0.02399585 
## ... Procrustes: rmse 0.001311163  max resid 0.003980052 
## ... Similar to previous best
## Run 475 stress 0.02721818 
## Run 476 stress 0.02721661 
## Run 477 stress 0.0297451 
## Run 478 stress 0.06128621 
## Run 479 stress 0.03162195 
## Run 480 stress 0.02721664 
## Run 481 stress 0.0297451 
## Run 482 stress 0.02723759 
## Run 483 stress 0.03035931 
## Run 484 stress 0.02721658 
## Run 485 stress 0.0297451 
## Run 486 stress 0.03160247 
## Run 487 stress 0.0608229 
## Run 488 stress 0.02975952 
## Run 489 stress 0.02975952 
## Run 490 stress 0.06082301 
## Run 491 stress 0.02721656 
## Run 492 stress 0.02975952 
## Run 493 stress 0.0297451 
## Run 494 stress 0.02974512 
## Run 495 stress 0.03035935 
## Run 496 stress 0.03160241 
## Run 497 stress 0.0297451 
## Run 498 stress 0.02975952 
## Run 499 stress 0.06085699 
## Run 500 stress 0.03162194 
## *** Best solution repeated 32 times
# Ocean sites and mixed lakes
fdeom_NMDS <- metaMDS(fdeom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.02854805 
## Run 1 stress 0.02854809 
## ... Procrustes: rmse 5.876288e-05  max resid 0.0001350598 
## ... Similar to previous best
## Run 2 stress 0.02854804 
## ... New best solution
## ... Procrustes: rmse 1.649422e-05  max resid 3.691337e-05 
## ... Similar to previous best
## Run 3 stress 0.0455063 
## Run 4 stress 0.02854807 
## ... Procrustes: rmse 0.0001754177  max resid 0.0004021639 
## ... Similar to previous best
## Run 5 stress 0.02854804 
## ... Procrustes: rmse 2.363629e-06  max resid 4.760317e-06 
## ... Similar to previous best
## Run 6 stress 0.02854806 
## ... Procrustes: rmse 2.993321e-05  max resid 6.80586e-05 
## ... Similar to previous best
## Run 7 stress 0.02854805 
## ... Procrustes: rmse 0.00015087  max resid 0.0003459527 
## ... Similar to previous best
## Run 8 stress 0.02854807 
## ... Procrustes: rmse 4.694569e-05  max resid 0.0001077256 
## ... Similar to previous best
## Run 9 stress 0.02854808 
## ... Procrustes: rmse 6.239399e-05  max resid 0.0001417828 
## ... Similar to previous best
## Run 10 stress 0.02854806 
## ... Procrustes: rmse 0.0001657592  max resid 0.0003820474 
## ... Similar to previous best
## Run 11 stress 0.02854815 
## ... Procrustes: rmse 0.00025349  max resid 0.0005839664 
## ... Similar to previous best
## Run 12 stress 0.04754104 
## Run 13 stress 0.02854806 
## ... Procrustes: rmse 0.0001625274  max resid 0.0003727271 
## ... Similar to previous best
## Run 14 stress 0.08585305 
## Run 15 stress 0.0455065 
## Run 16 stress 0.02854803 
## ... New best solution
## ... Procrustes: rmse 2.997186e-05  max resid 6.957237e-05 
## ... Similar to previous best
## Run 17 stress 0.08037808 
## Run 18 stress 0.04754118 
## Run 19 stress 0.04754106 
## Run 20 stress 0.02854823 
## ... Procrustes: rmse 0.0002727271  max resid 0.0006356073 
## ... Similar to previous best
## Run 21 stress 0.2336283 
## Run 22 stress 0.04754111 
## Run 23 stress 0.04550636 
## Run 24 stress 0.04754102 
## Run 25 stress 0.04754102 
## Run 26 stress 0.02854817 
## ... Procrustes: rmse 0.0001671538  max resid 0.0003835147 
## ... Similar to previous best
## Run 27 stress 0.04550651 
## Run 28 stress 0.04754113 
## Run 29 stress 0.02854807 
## ... Procrustes: rmse 7.717645e-05  max resid 0.0001783601 
## ... Similar to previous best
## Run 30 stress 0.04754111 
## Run 31 stress 0.04754113 
## Run 32 stress 0.02854808 
## ... Procrustes: rmse 0.0001504889  max resid 0.0003450252 
## ... Similar to previous best
## Run 33 stress 0.02854816 
## ... Procrustes: rmse 0.0001657504  max resid 0.0003808448 
## ... Similar to previous best
## Run 34 stress 0.04754116 
## Run 35 stress 0.02854807 
## ... Procrustes: rmse 0.0001361022  max resid 0.0003106124 
## ... Similar to previous best
## Run 36 stress 0.04550634 
## Run 37 stress 0.0455065 
## Run 38 stress 0.04754099 
## Run 39 stress 0.02854819 
## ... Procrustes: rmse 0.0001860317  max resid 0.0004282067 
## ... Similar to previous best
## Run 40 stress 0.02854813 
## ... Procrustes: rmse 0.0001360721  max resid 0.0003134106 
## ... Similar to previous best
## Run 41 stress 0.02854815 
## ... Procrustes: rmse 0.0002196091  max resid 0.0005023479 
## ... Similar to previous best
## Run 42 stress 0.04754105 
## Run 43 stress 0.04754099 
## Run 44 stress 0.02854809 
## ... Procrustes: rmse 0.0001046013  max resid 0.0002409174 
## ... Similar to previous best
## Run 45 stress 0.3407335 
## Run 46 stress 0.04754102 
## Run 47 stress 0.02854813 
## ... Procrustes: rmse 0.0001897089  max resid 0.0004324266 
## ... Similar to previous best
## Run 48 stress 0.02854804 
## ... Procrustes: rmse 8.49079e-06  max resid 2.163417e-05 
## ... Similar to previous best
## Run 49 stress 0.0285481 
## ... Procrustes: rmse 0.0001064776  max resid 0.0002444851 
## ... Similar to previous best
## Run 50 stress 0.08037812 
## Run 51 stress 0.02854805 
## ... Procrustes: rmse 4.312569e-05  max resid 9.881034e-05 
## ... Similar to previous best
## Run 52 stress 0.04550644 
## Run 53 stress 0.02854819 
## ... Procrustes: rmse 0.0001801611  max resid 0.0004139101 
## ... Similar to previous best
## Run 54 stress 0.02854812 
## ... Procrustes: rmse 0.0001991271  max resid 0.0004558436 
## ... Similar to previous best
## Run 55 stress 0.04754103 
## Run 56 stress 0.04754103 
## Run 57 stress 0.02854806 
## ... Procrustes: rmse 6.095594e-05  max resid 0.0001387091 
## ... Similar to previous best
## Run 58 stress 0.02854818 
## ... Procrustes: rmse 0.0001619874  max resid 0.0003748132 
## ... Similar to previous best
## Run 59 stress 0.04550642 
## Run 60 stress 0.08071124 
## Run 61 stress 0.04754105 
## Run 62 stress 0.04550646 
## Run 63 stress 0.04550631 
## Run 64 stress 0.02854805 
## ... Procrustes: rmse 4.784302e-05  max resid 0.0001100684 
## ... Similar to previous best
## Run 65 stress 0.08203614 
## Run 66 stress 0.04754104 
## Run 67 stress 0.08061326 
## Run 68 stress 0.04754099 
## Run 69 stress 0.02854821 
## ... Procrustes: rmse 0.0001821821  max resid 0.000421104 
## ... Similar to previous best
## Run 70 stress 0.04754098 
## Run 71 stress 0.04754098 
## Run 72 stress 0.04754105 
## Run 73 stress 0.04754109 
## Run 74 stress 0.047541 
## Run 75 stress 0.02854816 
## ... Procrustes: rmse 0.0001567762  max resid 0.0003620936 
## ... Similar to previous best
## Run 76 stress 0.04754107 
## Run 77 stress 0.3406959 
## Run 78 stress 0.04754113 
## Run 79 stress 0.02854814 
## ... Procrustes: rmse 0.0001325633  max resid 0.0003026097 
## ... Similar to previous best
## Run 80 stress 0.02854811 
## ... Procrustes: rmse 0.0001225602  max resid 0.0002824603 
## ... Similar to previous best
## Run 81 stress 0.04754104 
## Run 82 stress 0.02854808 
## ... Procrustes: rmse 8.269769e-05  max resid 0.0001881754 
## ... Similar to previous best
## Run 83 stress 0.04754102 
## Run 84 stress 0.04754099 
## Run 85 stress 0.04550665 
## Run 86 stress 0.08061305 
## Run 87 stress 0.04754104 
## Run 88 stress 0.04550638 
## Run 89 stress 0.0285482 
## ... Procrustes: rmse 0.0002573487  max resid 0.0005888527 
## ... Similar to previous best
## Run 90 stress 0.02854808 
## ... Procrustes: rmse 8.47139e-05  max resid 0.000194843 
## ... Similar to previous best
## Run 91 stress 0.02854812 
## ... Procrustes: rmse 0.0001093259  max resid 0.0002476162 
## ... Similar to previous best
## Run 92 stress 0.04550631 
## Run 93 stress 0.02854811 
## ... Procrustes: rmse 0.0001836311  max resid 0.0004207245 
## ... Similar to previous best
## Run 94 stress 0.04754119 
## Run 95 stress 0.02854806 
## ... Procrustes: rmse 5.915158e-05  max resid 0.0001361339 
## ... Similar to previous best
## Run 96 stress 0.04754099 
## Run 97 stress 0.04754098 
## Run 98 stress 0.04754109 
## Run 99 stress 0.02854815 
## ... Procrustes: rmse 0.0002201087  max resid 0.0004910222 
## ... Similar to previous best
## Run 100 stress 0.02854807 
## ... Procrustes: rmse 0.000139961  max resid 0.0003283818 
## ... Similar to previous best
## Run 101 stress 0.08448501 
## Run 102 stress 0.2799942 
## Run 103 stress 0.08636392 
## Run 104 stress 0.04754106 
## Run 105 stress 0.02854819 
## ... Procrustes: rmse 0.0001478403  max resid 0.0003355505 
## ... Similar to previous best
## Run 106 stress 0.04754117 
## Run 107 stress 0.02854815 
## ... Procrustes: rmse 0.0002219281  max resid 0.0005083211 
## ... Similar to previous best
## Run 108 stress 0.02854817 
## ... Procrustes: rmse 0.0001527298  max resid 0.0003533647 
## ... Similar to previous best
## Run 109 stress 0.04754105 
## Run 110 stress 0.02854803 
## ... Procrustes: rmse 6.806411e-05  max resid 0.0001553606 
## ... Similar to previous best
## Run 111 stress 0.02854806 
## ... Procrustes: rmse 0.0001207923  max resid 0.0002830623 
## ... Similar to previous best
## Run 112 stress 0.08071108 
## Run 113 stress 0.02854809 
## ... Procrustes: rmse 0.000105464  max resid 0.0002422974 
## ... Similar to previous best
## Run 114 stress 0.04550638 
## Run 115 stress 0.08061532 
## Run 116 stress 0.0807869 
## Run 117 stress 0.02854808 
## ... Procrustes: rmse 8.826907e-05  max resid 0.0002033415 
## ... Similar to previous best
## Run 118 stress 0.04754113 
## Run 119 stress 0.02854804 
## ... Procrustes: rmse 3.457983e-05  max resid 7.875695e-05 
## ... Similar to previous best
## Run 120 stress 0.2336285 
## Run 121 stress 0.02854813 
## ... Procrustes: rmse 0.0001885309  max resid 0.0004288865 
## ... Similar to previous best
## Run 122 stress 0.02854816 
## ... Procrustes: rmse 0.0001638056  max resid 0.0003762485 
## ... Similar to previous best
## Run 123 stress 0.02854812 
## ... Procrustes: rmse 0.0001278568  max resid 0.0002939586 
## ... Similar to previous best
## Run 124 stress 0.04754103 
## Run 125 stress 0.02854805 
## ... Procrustes: rmse 4.974235e-05  max resid 0.0001140346 
## ... Similar to previous best
## Run 126 stress 0.02854813 
## ... Procrustes: rmse 0.0002043304  max resid 0.0004693209 
## ... Similar to previous best
## Run 127 stress 0.04550646 
## Run 128 stress 0.04550633 
## Run 129 stress 0.02854814 
## ... Procrustes: rmse 0.0001432348  max resid 0.0003293465 
## ... Similar to previous best
## Run 130 stress 0.02854811 
## ... Procrustes: rmse 0.0001180541  max resid 0.0002709489 
## ... Similar to previous best
## Run 131 stress 0.08098007 
## Run 132 stress 0.02854808 
## ... Procrustes: rmse 0.0001535552  max resid 0.0003527571 
## ... Similar to previous best
## Run 133 stress 0.02854819 
## ... Procrustes: rmse 0.0001851773  max resid 0.0004263125 
## ... Similar to previous best
## Run 134 stress 0.04550642 
## Run 135 stress 0.02854806 
## ... Procrustes: rmse 5.894977e-05  max resid 0.000135829 
## ... Similar to previous best
## Run 136 stress 0.04754102 
## Run 137 stress 0.02854818 
## ... Procrustes: rmse 0.0001667702  max resid 0.0003854923 
## ... Similar to previous best
## Run 138 stress 0.0285481 
## ... Procrustes: rmse 0.0001080189  max resid 0.0002484444 
## ... Similar to previous best
## Run 139 stress 0.04550637 
## Run 140 stress 0.02854817 
## ... Procrustes: rmse 0.0002259674  max resid 0.0005149684 
## ... Similar to previous best
## Run 141 stress 0.02854803 
## ... New best solution
## ... Procrustes: rmse 2.268134e-05  max resid 5.165921e-05 
## ... Similar to previous best
## Run 142 stress 0.02854809 
## ... Procrustes: rmse 0.0001457801  max resid 0.0003328199 
## ... Similar to previous best
## Run 143 stress 0.02854809 
## ... Procrustes: rmse 0.0001192374  max resid 0.0002734311 
## ... Similar to previous best
## Run 144 stress 0.0285481 
## ... Procrustes: rmse 0.0001354987  max resid 0.0003105412 
## ... Similar to previous best
## Run 145 stress 0.04754107 
## Run 146 stress 0.0285482 
## ... Procrustes: rmse 0.0002144514  max resid 0.000487359 
## ... Similar to previous best
## Run 147 stress 0.312549 
## Run 148 stress 0.0475411 
## Run 149 stress 0.04754114 
## Run 150 stress 0.02854807 
## ... Procrustes: rmse 9.692386e-05  max resid 0.0002224861 
## ... Similar to previous best
## Run 151 stress 0.02854816 
## ... Procrustes: rmse 0.0001847149  max resid 0.0004243105 
## ... Similar to previous best
## Run 152 stress 0.02854804 
## ... Procrustes: rmse 5.904979e-05  max resid 0.0001350138 
## ... Similar to previous best
## Run 153 stress 0.02854804 
## ... Procrustes: rmse 5.708932e-05  max resid 0.0001313011 
## ... Similar to previous best
## Run 154 stress 0.04754109 
## Run 155 stress 0.02854818 
## ... Procrustes: rmse 0.0001961931  max resid 0.0004507737 
## ... Similar to previous best
## Run 156 stress 0.0285481 
## ... Procrustes: rmse 0.0001346835  max resid 0.0003092231 
## ... Similar to previous best
## Run 157 stress 0.08448466 
## Run 158 stress 0.04754099 
## Run 159 stress 0.04550644 
## Run 160 stress 0.04754114 
## Run 161 stress 0.04754105 
## Run 162 stress 0.0285482 
## ... Procrustes: rmse 0.0001971874  max resid 0.0004497266 
## ... Similar to previous best
## Run 163 stress 0.04550629 
## Run 164 stress 0.02854805 
## ... Procrustes: rmse 7.731108e-05  max resid 0.0001773535 
## ... Similar to previous best
## Run 165 stress 0.04754118 
## Run 166 stress 0.02854815 
## ... Procrustes: rmse 0.0001731992  max resid 0.0003986479 
## ... Similar to previous best
## Run 167 stress 0.02854809 
## ... Procrustes: rmse 0.0001447447  max resid 0.0003307816 
## ... Similar to previous best
## Run 168 stress 0.02854814 
## ... Procrustes: rmse 0.0001641191  max resid 0.0003777242 
## ... Similar to previous best
## Run 169 stress 0.3403702 
## Run 170 stress 0.02854819 
## ... Procrustes: rmse 0.0002087491  max resid 0.0004750898 
## ... Similar to previous best
## Run 171 stress 0.02854822 
## ... Procrustes: rmse 0.000224405  max resid 0.0005166739 
## ... Similar to previous best
## Run 172 stress 0.04550642 
## Run 173 stress 0.08585364 
## Run 174 stress 0.08707195 
## Run 175 stress 0.0455063 
## Run 176 stress 0.02854803 
## ... Procrustes: rmse 2.570917e-05  max resid 5.887497e-05 
## ... Similar to previous best
## Run 177 stress 0.02854816 
## ... Procrustes: rmse 0.0001853493  max resid 0.000425239 
## ... Similar to previous best
## Run 178 stress 0.02854811 
## ... Procrustes: rmse 0.0001608885  max resid 0.0003703423 
## ... Similar to previous best
## Run 179 stress 0.08097804 
## Run 180 stress 0.04550635 
## Run 181 stress 0.02854811 
## ... Procrustes: rmse 0.0001135595  max resid 0.0002553074 
## ... Similar to previous best
## Run 182 stress 0.04754101 
## Run 183 stress 0.02854806 
## ... Procrustes: rmse 0.000106997  max resid 0.0002441492 
## ... Similar to previous best
## Run 184 stress 0.02854817 
## ... Procrustes: rmse 0.0001892007  max resid 0.0004345237 
## ... Similar to previous best
## Run 185 stress 0.2799941 
## Run 186 stress 0.02854805 
## ... Procrustes: rmse 9.40771e-05  max resid 0.0002158284 
## ... Similar to previous best
## Run 187 stress 0.0858533 
## Run 188 stress 0.02854822 
## ... Procrustes: rmse 0.0002089372  max resid 0.0004826365 
## ... Similar to previous best
## Run 189 stress 0.04550647 
## Run 190 stress 0.04754104 
## Run 191 stress 0.08012922 
## Run 192 stress 0.02854814 
## ... Procrustes: rmse 0.0001661789  max resid 0.0003816481 
## ... Similar to previous best
## Run 193 stress 0.02854806 
## ... Procrustes: rmse 8.36004e-05  max resid 0.0001928761 
## ... Similar to previous best
## Run 194 stress 0.2358818 
## Run 195 stress 0.04754122 
## Run 196 stress 0.04550637 
## Run 197 stress 0.04754103 
## Run 198 stress 0.04754103 
## Run 199 stress 0.02854808 
## ... Procrustes: rmse 0.0001307423  max resid 0.0002980873 
## ... Similar to previous best
## Run 200 stress 0.04754108 
## Run 201 stress 0.02854815 
## ... Procrustes: rmse 0.0001747571  max resid 0.0004005305 
## ... Similar to previous best
## Run 202 stress 0.02854808 
## ... Procrustes: rmse 0.0001119361  max resid 0.0002566076 
## ... Similar to previous best
## Run 203 stress 0.02854814 
## ... Procrustes: rmse 0.000172343  max resid 0.0003955764 
## ... Similar to previous best
## Run 204 stress 0.02854811 
## ... Procrustes: rmse 0.0001387679  max resid 0.0003163104 
## ... Similar to previous best
## Run 205 stress 0.02854809 
## ... Procrustes: rmse 0.0001466374  max resid 0.0003355835 
## ... Similar to previous best
## Run 206 stress 0.04754112 
## Run 207 stress 0.02854805 
## ... Procrustes: rmse 6.617673e-05  max resid 0.000152541 
## ... Similar to previous best
## Run 208 stress 0.02854811 
## ... Procrustes: rmse 0.0001627218  max resid 0.0003722625 
## ... Similar to previous best
## Run 209 stress 0.04754101 
## Run 210 stress 0.04550632 
## Run 211 stress 0.04754099 
## Run 212 stress 0.0475411 
## Run 213 stress 0.3275219 
## Run 214 stress 0.04754116 
## Run 215 stress 0.02854808 
## ... Procrustes: rmse 0.0001129817  max resid 0.0002592628 
## ... Similar to previous best
## Run 216 stress 0.02854816 
## ... Procrustes: rmse 0.0001797738  max resid 0.0004109093 
## ... Similar to previous best
## Run 217 stress 0.02854804 
## ... Procrustes: rmse 3.802347e-05  max resid 8.675146e-05 
## ... Similar to previous best
## Run 218 stress 0.04754113 
## Run 219 stress 0.02854809 
## ... Procrustes: rmse 0.0001384024  max resid 0.000318374 
## ... Similar to previous best
## Run 220 stress 0.02854807 
## ... Procrustes: rmse 0.00011904  max resid 0.0002858207 
## ... Similar to previous best
## Run 221 stress 0.02854804 
## ... Procrustes: rmse 4.245693e-05  max resid 9.573707e-05 
## ... Similar to previous best
## Run 222 stress 0.04754099 
## Run 223 stress 0.02854818 
## ... Procrustes: rmse 0.0001978956  max resid 0.0004542559 
## ... Similar to previous best
## Run 224 stress 0.04754103 
## Run 225 stress 0.02854812 
## ... Procrustes: rmse 0.0001685153  max resid 0.000381704 
## ... Similar to previous best
## Run 226 stress 0.02854814 
## ... Procrustes: rmse 0.0001908009  max resid 0.0004370263 
## ... Similar to previous best
## Run 227 stress 0.04754108 
## Run 228 stress 0.02854821 
## ... Procrustes: rmse 0.0002165243  max resid 0.0004970223 
## ... Similar to previous best
## Run 229 stress 0.02854818 
## ... Procrustes: rmse 0.0002178819  max resid 0.0004984661 
## ... Similar to previous best
## Run 230 stress 0.04754107 
## Run 231 stress 0.0475411 
## Run 232 stress 0.340734 
## Run 233 stress 0.08070884 
## Run 234 stress 0.08078632 
## Run 235 stress 0.04550642 
## Run 236 stress 0.02854812 
## ... Procrustes: rmse 0.000178479  max resid 0.0004083099 
## ... Similar to previous best
## Run 237 stress 0.04550641 
## Run 238 stress 0.02854816 
## ... Procrustes: rmse 0.0001825466  max resid 0.000418692 
## ... Similar to previous best
## Run 239 stress 0.0285481 
## ... Procrustes: rmse 0.0001329256  max resid 0.0003043545 
## ... Similar to previous best
## Run 240 stress 0.02854816 
## ... Procrustes: rmse 0.0001696433  max resid 0.0003917963 
## ... Similar to previous best
## Run 241 stress 0.02854823 
## ... Procrustes: rmse 0.0002526204  max resid 0.0005784862 
## ... Similar to previous best
## Run 242 stress 0.047541 
## Run 243 stress 0.04550633 
## Run 244 stress 0.04550652 
## Run 245 stress 0.08563906 
## Run 246 stress 0.02854816 
## ... Procrustes: rmse 0.0002067603  max resid 0.0004741799 
## ... Similar to previous best
## Run 247 stress 0.3407336 
## Run 248 stress 0.02854812 
## ... Procrustes: rmse 0.0001497952  max resid 0.0003441332 
## ... Similar to previous best
## Run 249 stress 0.08061369 
## Run 250 stress 0.04754116 
## Run 251 stress 0.02854808 
## ... Procrustes: rmse 0.0001085041  max resid 0.0002484782 
## ... Similar to previous best
## Run 252 stress 0.04754112 
## Run 253 stress 0.3275201 
## Run 254 stress 0.02854822 
## ... Procrustes: rmse 0.0002261895  max resid 0.0005199898 
## ... Similar to previous best
## Run 255 stress 0.02854806 
## ... Procrustes: rmse 7.195852e-05  max resid 0.0001635277 
## ... Similar to previous best
## Run 256 stress 0.0285481 
## ... Procrustes: rmse 0.0001360465  max resid 0.0003121593 
## ... Similar to previous best
## Run 257 stress 0.0455064 
## Run 258 stress 0.02854823 
## ... Procrustes: rmse 0.000217405  max resid 0.0005017354 
## ... Similar to previous best
## Run 259 stress 0.02854807 
## ... Procrustes: rmse 0.0001238765  max resid 0.0002839557 
## ... Similar to previous best
## Run 260 stress 0.02854813 
## ... Procrustes: rmse 0.0001819704  max resid 0.0004168933 
## ... Similar to previous best
## Run 261 stress 0.08012929 
## Run 262 stress 0.02854809 
## ... Procrustes: rmse 0.0001218843  max resid 0.0002784274 
## ... Similar to previous best
## Run 263 stress 0.02854803 
## ... Procrustes: rmse 3.447092e-05  max resid 7.89202e-05 
## ... Similar to previous best
## Run 264 stress 0.02854807 
## ... Procrustes: rmse 7.920598e-05  max resid 0.0001796155 
## ... Similar to previous best
## Run 265 stress 0.04754102 
## Run 266 stress 0.3275197 
## Run 267 stress 0.047541 
## Run 268 stress 0.02854816 
## ... Procrustes: rmse 0.0001833788  max resid 0.0004221647 
## ... Similar to previous best
## Run 269 stress 0.02854806 
## ... Procrustes: rmse 0.000104434  max resid 0.0002390292 
## ... Similar to previous best
## Run 270 stress 0.02854804 
## ... Procrustes: rmse 6.050195e-05  max resid 0.0001384799 
## ... Similar to previous best
## Run 271 stress 0.04550639 
## Run 272 stress 0.04754099 
## Run 273 stress 0.02854813 
## ... Procrustes: rmse 0.0001491227  max resid 0.0003403272 
## ... Similar to previous best
## Run 274 stress 0.04754098 
## Run 275 stress 0.0285481 
## ... Procrustes: rmse 0.0001265351  max resid 0.0002893963 
## ... Similar to previous best
## Run 276 stress 0.04754103 
## Run 277 stress 0.02854804 
## ... Procrustes: rmse 6.393263e-05  max resid 0.0001464068 
## ... Similar to previous best
## Run 278 stress 0.04754099 
## Run 279 stress 0.04754107 
## Run 280 stress 0.02854819 
## ... Procrustes: rmse 0.0001968818  max resid 0.0004502312 
## ... Similar to previous best
## Run 281 stress 0.04754115 
## Run 282 stress 0.04754101 
## Run 283 stress 0.02854809 
## ... Procrustes: rmse 0.000126644  max resid 0.0002908512 
## ... Similar to previous best
## Run 284 stress 0.04754117 
## Run 285 stress 0.04754112 
## Run 286 stress 0.08071468 
## Run 287 stress 0.02854818 
## ... Procrustes: rmse 0.0002233983  max resid 0.000510964 
## ... Similar to previous best
## Run 288 stress 0.04754102 
## Run 289 stress 0.04754104 
## Run 290 stress 0.08037754 
## Run 291 stress 0.08636346 
## Run 292 stress 0.04754102 
## Run 293 stress 0.02854805 
## ... Procrustes: rmse 9.508757e-05  max resid 0.0002171252 
## ... Similar to previous best
## Run 294 stress 0.0285481 
## ... Procrustes: rmse 0.0001488074  max resid 0.0003395809 
## ... Similar to previous best
## Run 295 stress 0.04754101 
## Run 296 stress 0.02854804 
## ... Procrustes: rmse 5.728421e-05  max resid 0.0001307284 
## ... Similar to previous best
## Run 297 stress 0.3125478 
## Run 298 stress 0.02854808 
## ... Procrustes: rmse 0.0001297805  max resid 0.0002970404 
## ... Similar to previous best
## Run 299 stress 0.04550635 
## Run 300 stress 0.04754103 
## Run 301 stress 0.3403702 
## Run 302 stress 0.08563982 
## Run 303 stress 0.04550651 
## Run 304 stress 0.02854822 
## ... Procrustes: rmse 0.0002265329  max resid 0.0005192468 
## ... Similar to previous best
## Run 305 stress 0.04754113 
## Run 306 stress 0.04754103 
## Run 307 stress 0.02854803 
## ... Procrustes: rmse 2.500526e-05  max resid 5.749615e-05 
## ... Similar to previous best
## Run 308 stress 0.02854808 
## ... Procrustes: rmse 0.0001079876  max resid 0.0002475649 
## ... Similar to previous best
## Run 309 stress 0.0475411 
## Run 310 stress 0.02854809 
## ... Procrustes: rmse 0.0001219989  max resid 0.0002800758 
## ... Similar to previous best
## Run 311 stress 0.02854814 
## ... Procrustes: rmse 0.0001684749  max resid 0.0003870747 
## ... Similar to previous best
## Run 312 stress 0.02854808 
## ... Procrustes: rmse 0.000111752  max resid 0.0002557989 
## ... Similar to previous best
## Run 313 stress 0.02854818 
## ... Procrustes: rmse 0.0001991907  max resid 0.0004584773 
## ... Similar to previous best
## Run 314 stress 0.08448417 
## Run 315 stress 0.04754101 
## Run 316 stress 0.08078105 
## Run 317 stress 0.02854823 
## ... Procrustes: rmse 0.0002533266  max resid 0.0005792802 
## ... Similar to previous best
## Run 318 stress 0.04550652 
## Run 319 stress 0.08071133 
## Run 320 stress 0.04754113 
## Run 321 stress 0.02854823 
## ... Procrustes: rmse 0.0002275996  max resid 0.000523857 
## ... Similar to previous best
## Run 322 stress 0.02854817 
## ... Procrustes: rmse 0.000145411  max resid 0.0003274296 
## ... Similar to previous best
## Run 323 stress 0.02854803 
## ... New best solution
## ... Procrustes: rmse 1.598034e-05  max resid 3.717128e-05 
## ... Similar to previous best
## Run 324 stress 0.02854816 
## ... Procrustes: rmse 0.0001880297  max resid 0.0004354724 
## ... Similar to previous best
## Run 325 stress 0.02854818 
## ... Procrustes: rmse 0.0002035822  max resid 0.0004653477 
## ... Similar to previous best
## Run 326 stress 0.3276421 
## Run 327 stress 0.04550631 
## Run 328 stress 0.02854811 
## ... Procrustes: rmse 0.0001539172  max resid 0.0003543276 
## ... Similar to previous best
## Run 329 stress 0.04550634 
## Run 330 stress 0.02854814 
## ... Procrustes: rmse 0.0001799635  max resid 0.0004144507 
## ... Similar to previous best
## Run 331 stress 0.02854805 
## ... Procrustes: rmse 6.710213e-05  max resid 0.000154457 
## ... Similar to previous best
## Run 332 stress 0.02854814 
## ... Procrustes: rmse 0.0001862464  max resid 0.0004276175 
## ... Similar to previous best
## Run 333 stress 0.02854813 
## ... Procrustes: rmse 0.0001667797  max resid 0.0003813338 
## ... Similar to previous best
## Run 334 stress 0.02854803 
## ... Procrustes: rmse 3.617372e-05  max resid 8.424652e-05 
## ... Similar to previous best
## Run 335 stress 0.02854808 
## ... Procrustes: rmse 0.0001082536  max resid 0.0002462411 
## ... Similar to previous best
## Run 336 stress 0.02854805 
## ... Procrustes: rmse 7.472679e-05  max resid 0.0001723955 
## ... Similar to previous best
## Run 337 stress 0.04550638 
## Run 338 stress 0.04754107 
## Run 339 stress 0.02854805 
## ... Procrustes: rmse 8.19988e-05  max resid 0.000189173 
## ... Similar to previous best
## Run 340 stress 0.04754103 
## Run 341 stress 0.04550644 
## Run 342 stress 0.04754108 
## Run 343 stress 0.04550655 
## Run 344 stress 0.0455063 
## Run 345 stress 0.04550648 
## Run 346 stress 0.04754111 
## Run 347 stress 0.04754116 
## Run 348 stress 0.02854809 
## ... Procrustes: rmse 0.0001409432  max resid 0.0003243054 
## ... Similar to previous best
## Run 349 stress 0.04550642 
## Run 350 stress 0.04754098 
## Run 351 stress 0.02854804 
## ... Procrustes: rmse 7.049816e-05  max resid 0.0001622855 
## ... Similar to previous best
## Run 352 stress 0.04550641 
## Run 353 stress 0.04754108 
## Run 354 stress 0.04550637 
## Run 355 stress 0.04754099 
## Run 356 stress 0.02854818 
## ... Procrustes: rmse 0.0002175537  max resid 0.000499703 
## ... Similar to previous best
## Run 357 stress 0.04754102 
## Run 358 stress 0.04550647 
## Run 359 stress 0.04754105 
## Run 360 stress 0.04754098 
## Run 361 stress 0.3119309 
## Run 362 stress 0.02854803 
## ... Procrustes: rmse 1.416298e-05  max resid 3.290341e-05 
## ... Similar to previous best
## Run 363 stress 0.04754113 
## Run 364 stress 0.04550634 
## Run 365 stress 0.0801296 
## Run 366 stress 0.02854814 
## ... Procrustes: rmse 0.0001756138  max resid 0.0004013713 
## ... Similar to previous best
## Run 367 stress 0.04754103 
## Run 368 stress 0.02854823 
## ... Procrustes: rmse 0.0002447221  max resid 0.0005608863 
## ... Similar to previous best
## Run 369 stress 0.02854818 
## ... Procrustes: rmse 0.0002183995  max resid 0.0005014774 
## ... Similar to previous best
## Run 370 stress 0.04754104 
## Run 371 stress 0.08636269 
## Run 372 stress 0.02854807 
## ... Procrustes: rmse 0.0001110476  max resid 0.0002537497 
## ... Similar to previous best
## Run 373 stress 0.02854808 
## ... Procrustes: rmse 0.0001126229  max resid 0.0002576391 
## ... Similar to previous best
## Run 374 stress 0.0285481 
## ... Procrustes: rmse 0.0001499488  max resid 0.000344879 
## ... Similar to previous best
## Run 375 stress 0.02854812 
## ... Procrustes: rmse 0.0001640321  max resid 0.000376588 
## ... Similar to previous best
## Run 376 stress 0.02854806 
## ... Procrustes: rmse 0.000102883  max resid 0.000221106 
## ... Similar to previous best
## Run 377 stress 0.0455063 
## Run 378 stress 0.02854804 
## ... Procrustes: rmse 7.381661e-05  max resid 0.0001698107 
## ... Similar to previous best
## Run 379 stress 0.02854803 
## ... Procrustes: rmse 2.014161e-05  max resid 4.698569e-05 
## ... Similar to previous best
## Run 380 stress 0.04754109 
## Run 381 stress 0.02854813 
## ... Procrustes: rmse 0.0001779739  max resid 0.0004100194 
## ... Similar to previous best
## Run 382 stress 0.02854804 
## ... Procrustes: rmse 7.069069e-05  max resid 0.0001624525 
## ... Similar to previous best
## Run 383 stress 0.3407335 
## Run 384 stress 0.04550643 
## Run 385 stress 0.02854805 
## ... Procrustes: rmse 6.916647e-05  max resid 0.0001575116 
## ... Similar to previous best
## Run 386 stress 0.04754103 
## Run 387 stress 0.08013038 
## Run 388 stress 0.04550647 
## Run 389 stress 0.04550644 
## Run 390 stress 0.02854805 
## ... Procrustes: rmse 8.804814e-05  max resid 0.0002027216 
## ... Similar to previous best
## Run 391 stress 0.04550628 
## Run 392 stress 0.02854809 
## ... Procrustes: rmse 0.0001368971  max resid 0.0003149184 
## ... Similar to previous best
## Run 393 stress 0.02854819 
## ... Procrustes: rmse 0.0002197249  max resid 0.0005053054 
## ... Similar to previous best
## Run 394 stress 0.0455064 
## Run 395 stress 0.02854804 
## ... Procrustes: rmse 6.339469e-05  max resid 0.0001456931 
## ... Similar to previous best
## Run 396 stress 0.02854809 
## ... Procrustes: rmse 0.0001292511  max resid 0.000294458 
## ... Similar to previous best
## Run 397 stress 0.02854811 
## ... Procrustes: rmse 0.000156669  max resid 0.000360126 
## ... Similar to previous best
## Run 398 stress 0.04754098 
## Run 399 stress 0.2758775 
## Run 400 stress 0.02854818 
## ... Procrustes: rmse 0.0001925573  max resid 0.0004379106 
## ... Similar to previous best
## Run 401 stress 0.02854812 
## ... Procrustes: rmse 0.0001599873  max resid 0.0003655039 
## ... Similar to previous best
## Run 402 stress 0.02854816 
## ... Procrustes: rmse 0.0001991702  max resid 0.0004572363 
## ... Similar to previous best
## Run 403 stress 0.04754106 
## Run 404 stress 0.02854813 
## ... Procrustes: rmse 0.0001610431  max resid 0.0003690957 
## ... Similar to previous best
## Run 405 stress 0.04754102 
## Run 406 stress 0.04754112 
## Run 407 stress 0.04550631 
## Run 408 stress 0.04754116 
## Run 409 stress 0.02854804 
## ... Procrustes: rmse 5.517888e-05  max resid 0.0001269232 
## ... Similar to previous best
## Run 410 stress 0.04550637 
## Run 411 stress 0.04550636 
## Run 412 stress 0.02854809 
## ... Procrustes: rmse 0.0001421381  max resid 0.0003259327 
## ... Similar to previous best
## Run 413 stress 0.02854809 
## ... Procrustes: rmse 0.0001284122  max resid 0.0002965513 
## ... Similar to previous best
## Run 414 stress 0.02854804 
## ... Procrustes: rmse 4.362605e-05  max resid 7.336012e-05 
## ... Similar to previous best
## Run 415 stress 0.3266727 
## Run 416 stress 0.02854813 
## ... Procrustes: rmse 0.0001748529  max resid 0.0004015838 
## ... Similar to previous best
## Run 417 stress 0.047541 
## Run 418 stress 0.08636322 
## Run 419 stress 0.02854816 
## ... Procrustes: rmse 0.0001857848  max resid 0.0004248946 
## ... Similar to previous best
## Run 420 stress 0.02854805 
## ... Procrustes: rmse 7.072612e-05  max resid 0.00016167 
## ... Similar to previous best
## Run 421 stress 0.02854812 
## ... Procrustes: rmse 0.0001549812  max resid 0.0003581226 
## ... Similar to previous best
## Run 422 stress 0.04550632 
## Run 423 stress 0.04754106 
## Run 424 stress 0.0801297 
## Run 425 stress 0.3266727 
## Run 426 stress 0.02854819 
## ... Procrustes: rmse 0.0002211632  max resid 0.0005080964 
## ... Similar to previous best
## Run 427 stress 0.02854804 
## ... Procrustes: rmse 7.510955e-05  max resid 0.0001729978 
## ... Similar to previous best
## Run 428 stress 0.02854809 
## ... Procrustes: rmse 0.0001355999  max resid 0.0003116843 
## ... Similar to previous best
## Run 429 stress 0.04754118 
## Run 430 stress 0.02854812 
## ... Procrustes: rmse 0.0001415983  max resid 0.0003261509 
## ... Similar to previous best
## Run 431 stress 0.02854805 
## ... Procrustes: rmse 7.492309e-05  max resid 0.0001703657 
## ... Similar to previous best
## Run 432 stress 0.02854807 
## ... Procrustes: rmse 0.0001115511  max resid 0.0002568232 
## ... Similar to previous best
## Run 433 stress 0.04754102 
## Run 434 stress 0.02854817 
## ... Procrustes: rmse 0.0002045221  max resid 0.0004696784 
## ... Similar to previous best
## Run 435 stress 0.04550636 
## Run 436 stress 0.02854816 
## ... Procrustes: rmse 0.0002014204  max resid 0.0004629186 
## ... Similar to previous best
## Run 437 stress 0.02854806 
## ... Procrustes: rmse 9.844808e-05  max resid 0.0002258193 
## ... Similar to previous best
## Run 438 stress 0.04754105 
## Run 439 stress 0.02854813 
## ... Procrustes: rmse 0.0001771157  max resid 0.0004057092 
## ... Similar to previous best
## Run 440 stress 0.04754102 
## Run 441 stress 0.04754114 
## Run 442 stress 0.04754102 
## Run 443 stress 0.0285483 
## ... Procrustes: rmse 0.0002538763  max resid 0.000579064 
## ... Similar to previous best
## Run 444 stress 0.02854806 
## ... Procrustes: rmse 8.875645e-05  max resid 0.0002025363 
## ... Similar to previous best
## Run 445 stress 0.04550633 
## Run 446 stress 0.04550629 
## Run 447 stress 0.02854815 
## ... Procrustes: rmse 0.0001942703  max resid 0.0004460104 
## ... Similar to previous best
## Run 448 stress 0.02854812 
## ... Procrustes: rmse 0.0001667236  max resid 0.0003827968 
## ... Similar to previous best
## Run 449 stress 0.02854812 
## ... Procrustes: rmse 0.0001653719  max resid 0.0003803215 
## ... Similar to previous best
## Run 450 stress 0.02854812 
## ... Procrustes: rmse 0.0001720521  max resid 0.0003958496 
## ... Similar to previous best
## Run 451 stress 0.02854803 
## ... Procrustes: rmse 1.913879e-05  max resid 4.568289e-05 
## ... Similar to previous best
## Run 452 stress 0.04754105 
## Run 453 stress 0.02854803 
## ... Procrustes: rmse 4.540095e-05  max resid 0.0001047007 
## ... Similar to previous best
## Run 454 stress 0.04754099 
## Run 455 stress 0.04550648 
## Run 456 stress 0.2358821 
## Run 457 stress 0.04550632 
## Run 458 stress 0.0285481 
## ... Procrustes: rmse 0.0001413333  max resid 0.0003232146 
## ... Similar to previous best
## Run 459 stress 0.02854814 
## ... Procrustes: rmse 0.0001448302  max resid 0.0003287737 
## ... Similar to previous best
## Run 460 stress 0.02854805 
## ... Procrustes: rmse 8.844053e-05  max resid 0.0002033502 
## ... Similar to previous best
## Run 461 stress 0.04550636 
## Run 462 stress 0.02854812 
## ... Procrustes: rmse 0.0001470225  max resid 0.0003404426 
## ... Similar to previous best
## Run 463 stress 0.02854807 
## ... Procrustes: rmse 0.0001200025  max resid 0.0002756087 
## ... Similar to previous best
## Run 464 stress 0.0285481 
## ... Procrustes: rmse 0.0001476709  max resid 0.000338219 
## ... Similar to previous best
## Run 465 stress 0.02854813 
## ... Procrustes: rmse 0.0001738321  max resid 0.0004007872 
## ... Similar to previous best
## Run 466 stress 0.04754104 
## Run 467 stress 0.02854821 
## ... Procrustes: rmse 0.0002347469  max resid 0.0005384978 
## ... Similar to previous best
## Run 468 stress 0.04550656 
## Run 469 stress 0.3407335 
## Run 470 stress 0.02854808 
## ... Procrustes: rmse 0.0001246586  max resid 0.0002865359 
## ... Similar to previous best
## Run 471 stress 0.0807116 
## Run 472 stress 0.04550655 
## Run 473 stress 0.02854803 
## ... Procrustes: rmse 1.722382e-05  max resid 3.897697e-05 
## ... Similar to previous best
## Run 474 stress 0.3120127 
## Run 475 stress 0.08013051 
## Run 476 stress 0.02854811 
## ... Procrustes: rmse 0.0001611112  max resid 0.000369794 
## ... Similar to previous best
## Run 477 stress 0.02854807 
## ... Procrustes: rmse 0.0001137911  max resid 0.0002605718 
## ... Similar to previous best
## Run 478 stress 0.02854811 
## ... Procrustes: rmse 0.0001533371  max resid 0.000350441 
## ... Similar to previous best
## Run 479 stress 0.047541 
## Run 480 stress 0.02854806 
## ... Procrustes: rmse 8.264465e-05  max resid 0.0001876826 
## ... Similar to previous best
## Run 481 stress 0.0285482 
## ... Procrustes: rmse 0.0002272324  max resid 0.0005228725 
## ... Similar to previous best
## Run 482 stress 0.02854811 
## ... Procrustes: rmse 0.0001524663  max resid 0.0003481098 
## ... Similar to previous best
## Run 483 stress 0.04754106 
## Run 484 stress 0.02854815 
## ... Procrustes: rmse 0.0001849667  max resid 0.0004216208 
## ... Similar to previous best
## Run 485 stress 0.04754103 
## Run 486 stress 0.02854806 
## ... Procrustes: rmse 9.832527e-05  max resid 0.000226194 
## ... Similar to previous best
## Run 487 stress 0.04550639 
## Run 488 stress 0.02854803 
## ... Procrustes: rmse 2.736215e-05  max resid 6.357744e-05 
## ... Similar to previous best
## Run 489 stress 0.02854809 
## ... Procrustes: rmse 0.0001430612  max resid 0.0003295626 
## ... Similar to previous best
## Run 490 stress 0.02854814 
## ... Procrustes: rmse 0.0001728513  max resid 0.0003962848 
## ... Similar to previous best
## Run 491 stress 0.02854804 
## ... Procrustes: rmse 4.014412e-05  max resid 6.795372e-05 
## ... Similar to previous best
## Run 492 stress 0.04754112 
## Run 493 stress 0.08078802 
## Run 494 stress 0.02854805 
## ... Procrustes: rmse 7.757183e-05  max resid 0.0001777253 
## ... Similar to previous best
## Run 495 stress 0.04754106 
## Run 496 stress 0.02854814 
## ... Procrustes: rmse 0.0001850055  max resid 0.0004247179 
## ... Similar to previous best
## Run 497 stress 0.0475411 
## Run 498 stress 0.04754122 
## Run 499 stress 0.0285481 
## ... Procrustes: rmse 0.0001271349  max resid 0.0002920581 
## ... Similar to previous best
## Run 500 stress 0.02854806 
## ... Procrustes: rmse 9.887749e-05  max resid 0.0002286076 
## ... Similar to previous best
## *** Best solution repeated 91 times
# Stratified lakes and ocean sites
fdeso_NMDS <- metaMDS(fdeso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.047803 
## Run 1 stress 0.05592913 
## Run 2 stress 0.05050399 
## Run 3 stress 0.05592913 
## Run 4 stress 0.04780301 
## ... Procrustes: rmse 1.191311e-05  max resid 2.524444e-05 
## ... Similar to previous best
## Run 5 stress 0.05050399 
## Run 6 stress 0.047803 
## ... New best solution
## ... Procrustes: rmse 1.097827e-05  max resid 2.020363e-05 
## ... Similar to previous best
## Run 7 stress 0.0610109 
## Run 8 stress 0.05050403 
## Run 9 stress 0.05050397 
## Run 10 stress 0.05592913 
## Run 11 stress 0.05592913 
## Run 12 stress 0.2322761 
## Run 13 stress 0.06101092 
## Run 14 stress 0.047803 
## ... Procrustes: rmse 1.055879e-05  max resid 1.773413e-05 
## ... Similar to previous best
## Run 15 stress 0.0885735 
## Run 16 stress 0.047803 
## ... New best solution
## ... Procrustes: rmse 7.249244e-06  max resid 1.313461e-05 
## ... Similar to previous best
## Run 17 stress 0.05050395 
## Run 18 stress 0.05592913 
## Run 19 stress 0.09453779 
## Run 20 stress 0.05050398 
## Run 21 stress 0.06101099 
## Run 22 stress 0.047803 
## ... Procrustes: rmse 7.242943e-06  max resid 1.319329e-05 
## ... Similar to previous best
## Run 23 stress 0.047803 
## ... Procrustes: rmse 2.432634e-05  max resid 4.392222e-05 
## ... Similar to previous best
## Run 24 stress 0.09119622 
## Run 25 stress 0.05050395 
## Run 26 stress 0.04780301 
## ... Procrustes: rmse 5.192163e-05  max resid 9.316472e-05 
## ... Similar to previous best
## Run 27 stress 0.047803 
## ... New best solution
## ... Procrustes: rmse 1.807848e-06  max resid 3.246811e-06 
## ... Similar to previous best
## Run 28 stress 0.06101097 
## Run 29 stress 0.04780303 
## ... Procrustes: rmse 2.172818e-05  max resid 4.788566e-05 
## ... Similar to previous best
## Run 30 stress 0.0885735 
## Run 31 stress 0.05592913 
## Run 32 stress 0.047803 
## ... Procrustes: rmse 7.195801e-06  max resid 1.326227e-05 
## ... Similar to previous best
## Run 33 stress 0.09930135 
## Run 34 stress 0.05050396 
## Run 35 stress 0.0885735 
## Run 36 stress 0.09119623 
## Run 37 stress 0.09119622 
## Run 38 stress 0.05050397 
## Run 39 stress 0.05050402 
## Run 40 stress 0.05050395 
## Run 41 stress 0.0610109 
## Run 42 stress 0.04780302 
## ... Procrustes: rmse 5.839236e-05  max resid 0.00010494 
## ... Similar to previous best
## Run 43 stress 0.05592913 
## Run 44 stress 0.06101096 
## Run 45 stress 0.05050395 
## Run 46 stress 0.05592913 
## Run 47 stress 0.06101092 
## Run 48 stress 0.047803 
## ... Procrustes: rmse 1.689541e-05  max resid 3.006582e-05 
## ... Similar to previous best
## Run 49 stress 0.047803 
## ... Procrustes: rmse 7.51865e-06  max resid 1.275949e-05 
## ... Similar to previous best
## Run 50 stress 0.06101095 
## Run 51 stress 0.05050396 
## Run 52 stress 0.05050395 
## Run 53 stress 0.047803 
## ... Procrustes: rmse 2.778148e-06  max resid 5.175001e-06 
## ... Similar to previous best
## Run 54 stress 0.04780303 
## ... Procrustes: rmse 7.403314e-05  max resid 0.0001336308 
## ... Similar to previous best
## Run 55 stress 0.04780301 
## ... Procrustes: rmse 2.407849e-05  max resid 3.986032e-05 
## ... Similar to previous best
## Run 56 stress 0.047803 
## ... Procrustes: rmse 5.541094e-06  max resid 9.428173e-06 
## ... Similar to previous best
## Run 57 stress 0.09119622 
## Run 58 stress 0.05050395 
## Run 59 stress 0.047803 
## ... Procrustes: rmse 3.905428e-06  max resid 7.246433e-06 
## ... Similar to previous best
## Run 60 stress 0.05050396 
## Run 61 stress 0.0610109 
## Run 62 stress 0.04780301 
## ... Procrustes: rmse 3.908239e-05  max resid 7.089214e-05 
## ... Similar to previous best
## Run 63 stress 0.06101092 
## Run 64 stress 0.05592913 
## Run 65 stress 0.0610109 
## Run 66 stress 0.047803 
## ... Procrustes: rmse 1.62787e-05  max resid 2.88665e-05 
## ... Similar to previous best
## Run 67 stress 0.08752633 
## Run 68 stress 0.05592913 
## Run 69 stress 0.04780302 
## ... Procrustes: rmse 5.826015e-05  max resid 0.0001048889 
## ... Similar to previous best
## Run 70 stress 0.04780302 
## ... Procrustes: rmse 4.597595e-05  max resid 8.297368e-05 
## ... Similar to previous best
## Run 71 stress 0.05592913 
## Run 72 stress 0.04780301 
## ... Procrustes: rmse 3.449695e-05  max resid 6.216668e-05 
## ... Similar to previous best
## Run 73 stress 0.05592913 
## Run 74 stress 0.05592913 
## Run 75 stress 0.0885735 
## Run 76 stress 0.047803 
## ... Procrustes: rmse 9.403415e-07  max resid 1.670717e-06 
## ... Similar to previous best
## Run 77 stress 0.05592913 
## Run 78 stress 0.2759858 
## Run 79 stress 0.047803 
## ... Procrustes: rmse 5.025264e-06  max resid 9.206036e-06 
## ... Similar to previous best
## Run 80 stress 0.05050396 
## Run 81 stress 0.05050395 
## Run 82 stress 0.04780302 
## ... Procrustes: rmse 3.978031e-05  max resid 7.075546e-05 
## ... Similar to previous best
## Run 83 stress 0.047803 
## ... Procrustes: rmse 4.587261e-06  max resid 7.852931e-06 
## ... Similar to previous best
## Run 84 stress 0.047803 
## ... Procrustes: rmse 9.043432e-06  max resid 1.644184e-05 
## ... Similar to previous best
## Run 85 stress 0.05050396 
## Run 86 stress 0.05592913 
## Run 87 stress 0.04780301 
## ... Procrustes: rmse 3.91765e-05  max resid 7.048263e-05 
## ... Similar to previous best
## Run 88 stress 0.047803 
## ... Procrustes: rmse 1.860011e-05  max resid 3.386958e-05 
## ... Similar to previous best
## Run 89 stress 0.05050397 
## Run 90 stress 0.0610109 
## Run 91 stress 0.05050396 
## Run 92 stress 0.047803 
## ... New best solution
## ... Procrustes: rmse 1.084225e-06  max resid 1.838043e-06 
## ... Similar to previous best
## Run 93 stress 0.047803 
## ... Procrustes: rmse 3.350099e-06  max resid 6.937275e-06 
## ... Similar to previous best
## Run 94 stress 0.05592913 
## Run 95 stress 0.047803 
## ... Procrustes: rmse 5.732628e-06  max resid 1.125823e-05 
## ... Similar to previous best
## Run 96 stress 0.05592914 
## Run 97 stress 0.05050404 
## Run 98 stress 0.09930118 
## Run 99 stress 0.0972148 
## Run 100 stress 0.047803 
## ... Procrustes: rmse 1.622321e-05  max resid 2.908753e-05 
## ... Similar to previous best
## Run 101 stress 0.08857351 
## Run 102 stress 0.047803 
## ... Procrustes: rmse 9.15515e-06  max resid 1.989025e-05 
## ... Similar to previous best
## Run 103 stress 0.05050398 
## Run 104 stress 0.06101092 
## Run 105 stress 0.05592913 
## Run 106 stress 0.05592913 
## Run 107 stress 0.0610109 
## Run 108 stress 0.047803 
## ... Procrustes: rmse 4.044196e-06  max resid 7.274249e-06 
## ... Similar to previous best
## Run 109 stress 0.09434663 
## Run 110 stress 0.06101092 
## Run 111 stress 0.08752632 
## Run 112 stress 0.315012 
## Run 113 stress 0.06101099 
## Run 114 stress 0.05050395 
## Run 115 stress 0.08857351 
## Run 116 stress 0.047803 
## ... Procrustes: rmse 8.692285e-06  max resid 1.511384e-05 
## ... Similar to previous best
## Run 117 stress 0.05592913 
## Run 118 stress 0.08857351 
## Run 119 stress 0.05592913 
## Run 120 stress 0.05592913 
## Run 121 stress 0.047803 
## ... Procrustes: rmse 2.413633e-06  max resid 3.23088e-06 
## ... Similar to previous best
## Run 122 stress 0.05050402 
## Run 123 stress 0.05050397 
## Run 124 stress 0.05592913 
## Run 125 stress 0.05050396 
## Run 126 stress 0.05050395 
## Run 127 stress 0.0610109 
## Run 128 stress 0.05592913 
## Run 129 stress 0.05592913 
## Run 130 stress 0.05592913 
## Run 131 stress 0.06101101 
## Run 132 stress 0.047803 
## ... Procrustes: rmse 6.271822e-06  max resid 1.122817e-05 
## ... Similar to previous best
## Run 133 stress 0.0885735 
## Run 134 stress 0.05592913 
## Run 135 stress 0.047803 
## ... Procrustes: rmse 1.338075e-05  max resid 2.404441e-05 
## ... Similar to previous best
## Run 136 stress 0.1004322 
## Run 137 stress 0.04780301 
## ... Procrustes: rmse 4.121872e-05  max resid 7.289825e-05 
## ... Similar to previous best
## Run 138 stress 0.047803 
## ... Procrustes: rmse 4.66765e-06  max resid 7.723105e-06 
## ... Similar to previous best
## Run 139 stress 0.0885735 
## Run 140 stress 0.09119622 
## Run 141 stress 0.047803 
## ... Procrustes: rmse 1.615118e-05  max resid 2.927852e-05 
## ... Similar to previous best
## Run 142 stress 0.05592913 
## Run 143 stress 0.05050395 
## Run 144 stress 0.06101097 
## Run 145 stress 0.2755565 
## Run 146 stress 0.05050395 
## Run 147 stress 0.2759872 
## Run 148 stress 0.047803 
## ... Procrustes: rmse 8.40282e-06  max resid 1.522809e-05 
## ... Similar to previous best
## Run 149 stress 0.05050396 
## Run 150 stress 0.047803 
## ... Procrustes: rmse 6.262152e-06  max resid 1.063629e-05 
## ... Similar to previous best
## Run 151 stress 0.06101092 
## Run 152 stress 0.05050395 
## Run 153 stress 0.047803 
## ... Procrustes: rmse 2.329848e-05  max resid 4.099716e-05 
## ... Similar to previous best
## Run 154 stress 0.2755573 
## Run 155 stress 0.05592913 
## Run 156 stress 0.05050395 
## Run 157 stress 0.05592913 
## Run 158 stress 0.04780301 
## ... Procrustes: rmse 4.010989e-05  max resid 7.2221e-05 
## ... Similar to previous best
## Run 159 stress 0.3271648 
## Run 160 stress 0.061011 
## Run 161 stress 0.09119622 
## Run 162 stress 0.04780302 
## ... Procrustes: rmse 5.437778e-05  max resid 9.679761e-05 
## ... Similar to previous best
## Run 163 stress 0.047803 
## ... Procrustes: rmse 1.310589e-05  max resid 2.354588e-05 
## ... Similar to previous best
## Run 164 stress 0.047803 
## ... Procrustes: rmse 1.505868e-05  max resid 2.694708e-05 
## ... Similar to previous best
## Run 165 stress 0.04780301 
## ... Procrustes: rmse 3.277055e-05  max resid 5.872027e-05 
## ... Similar to previous best
## Run 166 stress 0.06101099 
## Run 167 stress 0.047803 
## ... Procrustes: rmse 2.454989e-05  max resid 4.443116e-05 
## ... Similar to previous best
## Run 168 stress 0.06101092 
## Run 169 stress 0.05592913 
## Run 170 stress 0.05592913 
## Run 171 stress 0.05050402 
## Run 172 stress 0.09453779 
## Run 173 stress 0.047803 
## ... Procrustes: rmse 7.098787e-06  max resid 1.298362e-05 
## ... Similar to previous best
## Run 174 stress 0.047803 
## ... Procrustes: rmse 4.151878e-06  max resid 7.335926e-06 
## ... Similar to previous best
## Run 175 stress 0.047803 
## ... Procrustes: rmse 1.703983e-05  max resid 3.059644e-05 
## ... Similar to previous best
## Run 176 stress 0.047803 
## ... Procrustes: rmse 1.774083e-05  max resid 3.22123e-05 
## ... Similar to previous best
## Run 177 stress 0.05592913 
## Run 178 stress 0.047803 
## ... Procrustes: rmse 2.009986e-05  max resid 3.593316e-05 
## ... Similar to previous best
## Run 179 stress 0.06101092 
## Run 180 stress 0.05050395 
## Run 181 stress 0.08752632 
## Run 182 stress 0.05592913 
## Run 183 stress 0.047803 
## ... Procrustes: rmse 4.853688e-06  max resid 8.881181e-06 
## ... Similar to previous best
## Run 184 stress 0.047803 
## ... Procrustes: rmse 3.381516e-06  max resid 5.719108e-06 
## ... Similar to previous best
## Run 185 stress 0.047803 
## ... Procrustes: rmse 2.720287e-06  max resid 4.365878e-06 
## ... Similar to previous best
## Run 186 stress 0.05050398 
## Run 187 stress 0.3013613 
## Run 188 stress 0.06101098 
## Run 189 stress 0.0610109 
## Run 190 stress 0.06101091 
## Run 191 stress 0.05592913 
## Run 192 stress 0.047803 
## ... Procrustes: rmse 1.267969e-06  max resid 2.392101e-06 
## ... Similar to previous best
## Run 193 stress 0.3046311 
## Run 194 stress 0.1004322 
## Run 195 stress 0.050504 
## Run 196 stress 0.3046311 
## Run 197 stress 0.05050399 
## Run 198 stress 0.047803 
## ... Procrustes: rmse 9.17781e-06  max resid 1.644584e-05 
## ... Similar to previous best
## Run 199 stress 0.08752633 
## Run 200 stress 0.0885735 
## Run 201 stress 0.08752632 
## Run 202 stress 0.09119625 
## Run 203 stress 0.047803 
## ... Procrustes: rmse 3.019786e-06  max resid 5.381822e-06 
## ... Similar to previous best
## Run 204 stress 0.04780302 
## ... Procrustes: rmse 5.618881e-05  max resid 0.0001002096 
## ... Similar to previous best
## Run 205 stress 0.09119622 
## Run 206 stress 0.047803 
## ... Procrustes: rmse 1.61339e-05  max resid 2.90019e-05 
## ... Similar to previous best
## Run 207 stress 0.047803 
## ... Procrustes: rmse 2.519178e-05  max resid 4.543991e-05 
## ... Similar to previous best
## Run 208 stress 0.05050397 
## Run 209 stress 0.05592913 
## Run 210 stress 0.06101093 
## Run 211 stress 0.08752632 
## Run 212 stress 0.047803 
## ... Procrustes: rmse 4.128663e-06  max resid 7.324783e-06 
## ... Similar to previous best
## Run 213 stress 0.05592913 
## Run 214 stress 0.04780301 
## ... Procrustes: rmse 3.896136e-05  max resid 7.014586e-05 
## ... Similar to previous best
## Run 215 stress 0.05050398 
## Run 216 stress 0.05592913 
## Run 217 stress 0.04780301 
## ... Procrustes: rmse 3.392922e-05  max resid 6.08055e-05 
## ... Similar to previous best
## Run 218 stress 0.0610109 
## Run 219 stress 0.05050404 
## Run 220 stress 0.047803 
## ... Procrustes: rmse 6.437463e-06  max resid 1.17264e-05 
## ... Similar to previous best
## Run 221 stress 0.06101097 
## Run 222 stress 0.05592913 
## Run 223 stress 0.047803 
## ... Procrustes: rmse 1.030399e-05  max resid 1.860842e-05 
## ... Similar to previous best
## Run 224 stress 0.047803 
## ... Procrustes: rmse 7.963227e-06  max resid 1.329825e-05 
## ... Similar to previous best
## Run 225 stress 0.05592913 
## Run 226 stress 0.09930192 
## Run 227 stress 0.05050396 
## Run 228 stress 0.08752632 
## Run 229 stress 0.08752633 
## Run 230 stress 0.05050396 
## Run 231 stress 0.3407336 
## Run 232 stress 0.047803 
## ... Procrustes: rmse 3.420428e-06  max resid 5.554664e-06 
## ... Similar to previous best
## Run 233 stress 0.05592913 
## Run 234 stress 0.3046316 
## Run 235 stress 0.09930133 
## Run 236 stress 0.04780301 
## ... Procrustes: rmse 3.210655e-05  max resid 5.792246e-05 
## ... Similar to previous best
## Run 237 stress 0.05592913 
## Run 238 stress 0.05050396 
## Run 239 stress 0.05050395 
## Run 240 stress 0.05592913 
## Run 241 stress 0.047803 
## ... Procrustes: rmse 6.680162e-06  max resid 1.205988e-05 
## ... Similar to previous best
## Run 242 stress 0.05592913 
## Run 243 stress 0.2755569 
## Run 244 stress 0.047803 
## ... Procrustes: rmse 5.246959e-06  max resid 9.430828e-06 
## ... Similar to previous best
## Run 245 stress 0.047803 
## ... Procrustes: rmse 5.955633e-06  max resid 1.101357e-05 
## ... Similar to previous best
## Run 246 stress 0.09119625 
## Run 247 stress 0.047803 
## ... Procrustes: rmse 3.46151e-06  max resid 6.167666e-06 
## ... Similar to previous best
## Run 248 stress 0.05050403 
## Run 249 stress 0.06101091 
## Run 250 stress 0.050504 
## Run 251 stress 0.05050395 
## Run 252 stress 0.05050395 
## Run 253 stress 0.05050399 
## Run 254 stress 0.09119625 
## Run 255 stress 0.06101091 
## Run 256 stress 0.047803 
## ... Procrustes: rmse 8.577589e-06  max resid 1.551887e-05 
## ... Similar to previous best
## Run 257 stress 0.0885735 
## Run 258 stress 0.3186539 
## Run 259 stress 0.0885735 
## Run 260 stress 0.08752632 
## Run 261 stress 0.05592913 
## Run 262 stress 0.09119623 
## Run 263 stress 0.047803 
## ... Procrustes: rmse 1.407347e-05  max resid 2.540203e-05 
## ... Similar to previous best
## Run 264 stress 0.05592913 
## Run 265 stress 0.047803 
## ... Procrustes: rmse 3.338157e-05  max resid 6.037475e-05 
## ... Similar to previous best
## Run 266 stress 0.05050398 
## Run 267 stress 0.06101092 
## Run 268 stress 0.08752632 
## Run 269 stress 0.047803 
## ... Procrustes: rmse 5.815646e-06  max resid 1.028824e-05 
## ... Similar to previous best
## Run 270 stress 0.05050395 
## Run 271 stress 0.05050398 
## Run 272 stress 0.09453781 
## Run 273 stress 0.05592913 
## Run 274 stress 0.05592913 
## Run 275 stress 0.05050397 
## Run 276 stress 0.04780301 
## ... Procrustes: rmse 3.664598e-05  max resid 6.62516e-05 
## ... Similar to previous best
## Run 277 stress 0.047803 
## ... Procrustes: rmse 9.00656e-06  max resid 1.61405e-05 
## ... Similar to previous best
## Run 278 stress 0.047803 
## ... Procrustes: rmse 2.431215e-06  max resid 4.711429e-06 
## ... Similar to previous best
## Run 279 stress 0.05592913 
## Run 280 stress 0.05050396 
## Run 281 stress 0.05592913 
## Run 282 stress 0.05592913 
## Run 283 stress 0.047803 
## ... Procrustes: rmse 1.610542e-06  max resid 2.627021e-06 
## ... Similar to previous best
## Run 284 stress 0.0610109 
## Run 285 stress 0.06101094 
## Run 286 stress 0.047803 
## ... Procrustes: rmse 2.452529e-05  max resid 4.390048e-05 
## ... Similar to previous best
## Run 287 stress 0.047803 
## ... Procrustes: rmse 4.520512e-06  max resid 8.294545e-06 
## ... Similar to previous best
## Run 288 stress 0.05050401 
## Run 289 stress 0.09119622 
## Run 290 stress 0.047803 
## ... Procrustes: rmse 5.982432e-06  max resid 1.112715e-05 
## ... Similar to previous best
## Run 291 stress 0.05050401 
## Run 292 stress 0.047803 
## ... Procrustes: rmse 2.832227e-05  max resid 5.078126e-05 
## ... Similar to previous best
## Run 293 stress 0.05592913 
## Run 294 stress 0.05050395 
## Run 295 stress 0.05592913 
## Run 296 stress 0.04780302 
## ... Procrustes: rmse 2.996009e-05  max resid 5.535009e-05 
## ... Similar to previous best
## Run 297 stress 0.05050395 
## Run 298 stress 0.06101101 
## Run 299 stress 0.047803 
## ... Procrustes: rmse 2.542092e-05  max resid 4.608795e-05 
## ... Similar to previous best
## Run 300 stress 0.05050396 
## Run 301 stress 0.05592913 
## Run 302 stress 0.06101091 
## Run 303 stress 0.05592913 
## Run 304 stress 0.06101098 
## Run 305 stress 0.05592913 
## Run 306 stress 0.06101093 
## Run 307 stress 0.047803 
## ... Procrustes: rmse 9.894877e-06  max resid 1.772133e-05 
## ... Similar to previous best
## Run 308 stress 0.0610109 
## Run 309 stress 0.08752632 
## Run 310 stress 0.047803 
## ... Procrustes: rmse 2.318738e-05  max resid 4.162784e-05 
## ... Similar to previous best
## Run 311 stress 0.08857351 
## Run 312 stress 0.05592913 
## Run 313 stress 0.05592913 
## Run 314 stress 0.08752632 
## Run 315 stress 0.06101099 
## Run 316 stress 0.04780301 
## ... Procrustes: rmse 2.968747e-05  max resid 5.242646e-05 
## ... Similar to previous best
## Run 317 stress 0.047803 
## ... Procrustes: rmse 1.35997e-05  max resid 2.443716e-05 
## ... Similar to previous best
## Run 318 stress 0.06101094 
## Run 319 stress 0.05592913 
## Run 320 stress 0.06101096 
## Run 321 stress 0.047803 
## ... Procrustes: rmse 1.52954e-05  max resid 2.723583e-05 
## ... Similar to previous best
## Run 322 stress 0.05592913 
## Run 323 stress 0.050504 
## Run 324 stress 0.05592913 
## Run 325 stress 0.05592913 
## Run 326 stress 0.047803 
## ... Procrustes: rmse 2.493283e-06  max resid 4.44067e-06 
## ... Similar to previous best
## Run 327 stress 0.05050395 
## Run 328 stress 0.0885735 
## Run 329 stress 0.06101103 
## Run 330 stress 0.0885735 
## Run 331 stress 0.047803 
## ... Procrustes: rmse 8.112257e-06  max resid 1.726123e-05 
## ... Similar to previous best
## Run 332 stress 0.047803 
## ... Procrustes: rmse 6.212075e-06  max resid 1.112559e-05 
## ... Similar to previous best
## Run 333 stress 0.05592913 
## Run 334 stress 0.05592913 
## Run 335 stress 0.05050399 
## Run 336 stress 0.047803 
## ... Procrustes: rmse 4.500855e-06  max resid 7.983485e-06 
## ... Similar to previous best
## Run 337 stress 0.047803 
## ... Procrustes: rmse 2.537196e-05  max resid 4.513673e-05 
## ... Similar to previous best
## Run 338 stress 0.05050396 
## Run 339 stress 0.047803 
## ... Procrustes: rmse 7.51391e-06  max resid 1.334214e-05 
## ... Similar to previous best
## Run 340 stress 0.08857351 
## Run 341 stress 0.047803 
## ... Procrustes: rmse 2.650564e-06  max resid 5.075246e-06 
## ... Similar to previous best
## Run 342 stress 0.05592913 
## Run 343 stress 0.05050395 
## Run 344 stress 0.05050396 
## Run 345 stress 0.047803 
## ... Procrustes: rmse 2.338526e-05  max resid 4.166704e-05 
## ... Similar to previous best
## Run 346 stress 0.05592913 
## Run 347 stress 0.09930137 
## Run 348 stress 0.09119622 
## Run 349 stress 0.04780303 
## ... Procrustes: rmse 2.62383e-05  max resid 5.277812e-05 
## ... Similar to previous best
## Run 350 stress 0.05592913 
## Run 351 stress 0.05050395 
## Run 352 stress 0.05592913 
## Run 353 stress 0.05050395 
## Run 354 stress 0.09119623 
## Run 355 stress 0.06101093 
## Run 356 stress 0.09119622 
## Run 357 stress 0.06101094 
## Run 358 stress 0.05050395 
## Run 359 stress 0.05592913 
## Run 360 stress 0.3013603 
## Run 361 stress 0.06101092 
## Run 362 stress 0.05592913 
## Run 363 stress 0.047803 
## ... Procrustes: rmse 2.33916e-05  max resid 4.170482e-05 
## ... Similar to previous best
## Run 364 stress 0.05050399 
## Run 365 stress 0.05050399 
## Run 366 stress 0.047803 
## ... Procrustes: rmse 5.002928e-06  max resid 8.538716e-06 
## ... Similar to previous best
## Run 367 stress 0.05050395 
## Run 368 stress 0.047803 
## ... Procrustes: rmse 6.662976e-06  max resid 1.159416e-05 
## ... Similar to previous best
## Run 369 stress 0.047803 
## ... Procrustes: rmse 1.85239e-05  max resid 3.334986e-05 
## ... Similar to previous best
## Run 370 stress 0.05050397 
## Run 371 stress 0.05050404 
## Run 372 stress 0.05592913 
## Run 373 stress 0.3046311 
## Run 374 stress 0.06101099 
## Run 375 stress 0.2322761 
## Run 376 stress 0.08752634 
## Run 377 stress 0.3266727 
## Run 378 stress 0.047803 
## ... Procrustes: rmse 2.164468e-05  max resid 3.905418e-05 
## ... Similar to previous best
## Run 379 stress 0.05592913 
## Run 380 stress 0.05050395 
## Run 381 stress 0.05592913 
## Run 382 stress 0.05050395 
## Run 383 stress 0.0885735 
## Run 384 stress 0.05592913 
## Run 385 stress 0.2645349 
## Run 386 stress 0.05050396 
## Run 387 stress 0.08752632 
## Run 388 stress 0.0885735 
## Run 389 stress 0.05050395 
## Run 390 stress 0.04780301 
## ... Procrustes: rmse 3.350377e-05  max resid 5.991201e-05 
## ... Similar to previous best
## Run 391 stress 0.05592913 
## Run 392 stress 0.047803 
## ... Procrustes: rmse 5.441347e-06  max resid 9.951329e-06 
## ... Similar to previous best
## Run 393 stress 0.09453786 
## Run 394 stress 0.05050396 
## Run 395 stress 0.05050396 
## Run 396 stress 0.06101093 
## Run 397 stress 0.047803 
## ... Procrustes: rmse 3.49185e-06  max resid 6.214622e-06 
## ... Similar to previous best
## Run 398 stress 0.08752632 
## Run 399 stress 0.05592913 
## Run 400 stress 0.04780302 
## ... Procrustes: rmse 5.805655e-05  max resid 0.000104832 
## ... Similar to previous best
## Run 401 stress 0.047803 
## ... Procrustes: rmse 1.327575e-05  max resid 2.400433e-05 
## ... Similar to previous best
## Run 402 stress 0.09721479 
## Run 403 stress 0.06101098 
## Run 404 stress 0.047803 
## ... Procrustes: rmse 1.71993e-05  max resid 3.076522e-05 
## ... Similar to previous best
## Run 405 stress 0.047803 
## ... Procrustes: rmse 1.965675e-05  max resid 3.351288e-05 
## ... Similar to previous best
## Run 406 stress 0.05592913 
## Run 407 stress 0.09930137 
## Run 408 stress 0.05592913 
## Run 409 stress 0.06101092 
## Run 410 stress 0.3046313 
## Run 411 stress 0.09212375 
## Run 412 stress 0.0610109 
## Run 413 stress 0.06101098 
## Run 414 stress 0.0885735 
## Run 415 stress 0.09119622 
## Run 416 stress 0.047803 
## ... Procrustes: rmse 1.958606e-05  max resid 3.46658e-05 
## ... Similar to previous best
## Run 417 stress 0.05050395 
## Run 418 stress 0.05050395 
## Run 419 stress 0.06101091 
## Run 420 stress 0.3087187 
## Run 421 stress 0.04780301 
## ... Procrustes: rmse 4.041595e-05  max resid 7.293001e-05 
## ... Similar to previous best
## Run 422 stress 0.08752632 
## Run 423 stress 0.05050396 
## Run 424 stress 0.05592913 
## Run 425 stress 0.05592913 
## Run 426 stress 0.08857353 
## Run 427 stress 0.047803 
## ... Procrustes: rmse 1.046704e-05  max resid 1.910798e-05 
## ... Similar to previous best
## Run 428 stress 0.05592913 
## Run 429 stress 0.09453779 
## Run 430 stress 0.08857353 
## Run 431 stress 0.05592913 
## Run 432 stress 0.05050395 
## Run 433 stress 0.04780301 
## ... Procrustes: rmse 4.11326e-05  max resid 7.417422e-05 
## ... Similar to previous best
## Run 434 stress 0.05592913 
## Run 435 stress 0.09721448 
## Run 436 stress 0.047803 
## ... Procrustes: rmse 1.918413e-05  max resid 3.455402e-05 
## ... Similar to previous best
## Run 437 stress 0.09453784 
## Run 438 stress 0.09119622 
## Run 439 stress 0.047803 
## ... Procrustes: rmse 6.789811e-06  max resid 1.211364e-05 
## ... Similar to previous best
## Run 440 stress 0.05050398 
## Run 441 stress 0.047803 
## ... Procrustes: rmse 6.03937e-06  max resid 1.088225e-05 
## ... Similar to previous best
## Run 442 stress 0.06101093 
## Run 443 stress 0.08752632 
## Run 444 stress 0.08752632 
## Run 445 stress 0.266201 
## Run 446 stress 0.05592913 
## Run 447 stress 0.09434693 
## Run 448 stress 0.047803 
## ... Procrustes: rmse 1.044922e-05  max resid 1.845635e-05 
## ... Similar to previous best
## Run 449 stress 0.05592913 
## Run 450 stress 0.047803 
## ... Procrustes: rmse 3.546522e-06  max resid 5.870191e-06 
## ... Similar to previous best
## Run 451 stress 0.05592913 
## Run 452 stress 0.047803 
## ... Procrustes: rmse 5.553493e-06  max resid 9.802141e-06 
## ... Similar to previous best
## Run 453 stress 0.06101091 
## Run 454 stress 0.047803 
## ... Procrustes: rmse 7.32558e-06  max resid 1.246448e-05 
## ... Similar to previous best
## Run 455 stress 0.06101091 
## Run 456 stress 0.04780301 
## ... Procrustes: rmse 3.743623e-05  max resid 6.681032e-05 
## ... Similar to previous best
## Run 457 stress 0.05050395 
## Run 458 stress 0.05592913 
## Run 459 stress 0.08752632 
## Run 460 stress 0.047803 
## ... Procrustes: rmse 2.904861e-05  max resid 5.269781e-05 
## ... Similar to previous best
## Run 461 stress 0.05050402 
## Run 462 stress 0.04780301 
## ... Procrustes: rmse 4.637074e-05  max resid 8.301048e-05 
## ... Similar to previous best
## Run 463 stress 0.05592913 
## Run 464 stress 0.08752632 
## Run 465 stress 0.09119624 
## Run 466 stress 0.05050395 
## Run 467 stress 0.05592914 
## Run 468 stress 0.05050395 
## Run 469 stress 0.06101094 
## Run 470 stress 0.04780301 
## ... Procrustes: rmse 5.155656e-05  max resid 9.268313e-05 
## ... Similar to previous best
## Run 471 stress 0.047803 
## ... Procrustes: rmse 2.904493e-06  max resid 4.541089e-06 
## ... Similar to previous best
## Run 472 stress 0.047803 
## ... Procrustes: rmse 2.312504e-05  max resid 4.141859e-05 
## ... Similar to previous best
## Run 473 stress 0.047803 
## ... Procrustes: rmse 1.572539e-05  max resid 2.859241e-05 
## ... Similar to previous best
## Run 474 stress 0.05050396 
## Run 475 stress 0.05592913 
## Run 476 stress 0.05592913 
## Run 477 stress 0.047803 
## ... Procrustes: rmse 3.293429e-05  max resid 5.954258e-05 
## ... Similar to previous best
## Run 478 stress 0.05050401 
## Run 479 stress 0.06101099 
## Run 480 stress 0.047803 
## ... Procrustes: rmse 1.358608e-06  max resid 2.264304e-06 
## ... Similar to previous best
## Run 481 stress 0.05592913 
## Run 482 stress 0.2755566 
## Run 483 stress 0.05592913 
## Run 484 stress 0.05050396 
## Run 485 stress 0.0885735 
## Run 486 stress 0.05592913 
## Run 487 stress 0.047803 
## ... Procrustes: rmse 6.252208e-06  max resid 1.111215e-05 
## ... Similar to previous best
## Run 488 stress 0.05592913 
## Run 489 stress 0.05592913 
## Run 490 stress 0.047803 
## ... Procrustes: rmse 3.497585e-06  max resid 6.393027e-06 
## ... Similar to previous best
## Run 491 stress 0.050504 
## Run 492 stress 0.05050396 
## Run 493 stress 0.05050395 
## Run 494 stress 0.05592913 
## Run 495 stress 0.05592913 
## Run 496 stress 0.04780301 
## ... Procrustes: rmse 3.958731e-05  max resid 7.151201e-05 
## ... Similar to previous best
## Run 497 stress 0.09119622 
## Run 498 stress 0.047803 
## ... Procrustes: rmse 5.111047e-06  max resid 9.00235e-06 
## ... Similar to previous best
## Run 499 stress 0.06101093 
## Run 500 stress 0.04780301 
## ... Procrustes: rmse 4.912427e-05  max resid 8.861307e-05 
## ... Similar to previous best
## *** Best solution repeated 113 times
### Biogeographic
# All sites 
fdb_NMDS <- metaMDS(fdb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08402375 
## Run 1 stress 0.09888527 
## Run 2 stress 0.09690883 
## Run 3 stress 0.1118139 
## Run 4 stress 0.08111521 
## ... New best solution
## ... Procrustes: rmse 0.07341758  max resid 0.2713466 
## Run 5 stress 0.09620777 
## Run 6 stress 0.0962707 
## Run 7 stress 0.08117976 
## ... Procrustes: rmse 0.011352  max resid 0.0438757 
## Run 8 stress 0.09932636 
## Run 9 stress 0.08660801 
## Run 10 stress 0.1124925 
## Run 11 stress 0.08118103 
## ... Procrustes: rmse 0.003898011  max resid 0.01430575 
## Run 12 stress 0.108898 
## Run 13 stress 0.08430133 
## Run 14 stress 0.1088631 
## Run 15 stress 0.08109873 
## ... New best solution
## ... Procrustes: rmse 0.01049833  max resid 0.04317057 
## Run 16 stress 0.09690871 
## Run 17 stress 0.0843884 
## Run 18 stress 0.09627059 
## Run 19 stress 0.08321111 
## Run 20 stress 0.111814 
## Run 21 stress 0.08321112 
## Run 22 stress 0.1236452 
## Run 23 stress 0.08118105 
## ... Procrustes: rmse 0.01081377  max resid 0.04083148 
## Run 24 stress 0.08118109 
## ... Procrustes: rmse 0.0108007  max resid 0.04077322 
## Run 25 stress 0.08438844 
## Run 26 stress 0.08109879 
## ... Procrustes: rmse 9.224117e-05  max resid 0.0002452382 
## ... Similar to previous best
## Run 27 stress 0.08640084 
## Run 28 stress 0.09690876 
## Run 29 stress 0.09935625 
## Run 30 stress 0.08250941 
## Run 31 stress 0.08660801 
## Run 32 stress 0.08111521 
## ... Procrustes: rmse 0.01050073  max resid 0.04306162 
## Run 33 stress 0.114256 
## Run 34 stress 0.08397261 
## Run 35 stress 0.0843884 
## Run 36 stress 0.08402381 
## Run 37 stress 0.09627094 
## Run 38 stress 0.08640084 
## Run 39 stress 0.08271488 
## Run 40 stress 0.1088664 
## Run 41 stress 0.08109876 
## ... Procrustes: rmse 6.671577e-05  max resid 0.0001773941 
## ... Similar to previous best
## Run 42 stress 0.09690909 
## Run 43 stress 0.1084048 
## Run 44 stress 0.08284644 
## Run 45 stress 0.1092151 
## Run 46 stress 0.09620779 
## Run 47 stress 0.09620784 
## Run 48 stress 0.1088231 
## Run 49 stress 0.08271486 
## Run 50 stress 0.09798173 
## Run 51 stress 0.1087117 
## Run 52 stress 0.09935503 
## Run 53 stress 0.08321119 
## Run 54 stress 0.1236453 
## Run 55 stress 0.08660801 
## Run 56 stress 0.08236116 
## Run 57 stress 0.1236455 
## Run 58 stress 0.1087114 
## Run 59 stress 0.09627059 
## Run 60 stress 0.09629915 
## Run 61 stress 0.08402375 
## Run 62 stress 0.09798571 
## Run 63 stress 0.08640084 
## Run 64 stress 0.1088232 
## Run 65 stress 0.109214 
## Run 66 stress 0.08321116 
## Run 67 stress 0.09620781 
## Run 68 stress 0.108863 
## Run 69 stress 0.08321111 
## Run 70 stress 0.1084048 
## Run 71 stress 0.08236117 
## Run 72 stress 0.09935533 
## Run 73 stress 0.08236117 
## Run 74 stress 0.08640084 
## Run 75 stress 0.08438842 
## Run 76 stress 0.09925274 
## Run 77 stress 0.08640084 
## Run 78 stress 0.1147145 
## Run 79 stress 0.08402376 
## Run 80 stress 0.1238109 
## Run 81 stress 0.1088228 
## Run 82 stress 0.1084219 
## Run 83 stress 0.1088981 
## Run 84 stress 0.08402376 
## Run 85 stress 0.08640084 
## Run 86 stress 0.09627059 
## Run 87 stress 0.08284645 
## Run 88 stress 0.08111521 
## ... Procrustes: rmse 0.01049774  max resid 0.04305049 
## Run 89 stress 0.1088231 
## Run 90 stress 0.08649986 
## Run 91 stress 0.08321127 
## Run 92 stress 0.08271486 
## Run 93 stress 0.3695366 
## Run 94 stress 0.09798548 
## Run 95 stress 0.08402378 
## Run 96 stress 0.08650008 
## Run 97 stress 0.08118103 
## ... Procrustes: rmse 0.01084194  max resid 0.04094997 
## Run 98 stress 0.08117975 
## ... Procrustes: rmse 0.004305864  max resid 0.01660371 
## Run 99 stress 0.09935595 
## Run 100 stress 0.1088632 
## Run 101 stress 0.08117976 
## ... Procrustes: rmse 0.004306957  max resid 0.01660298 
## Run 102 stress 0.08660802 
## Run 103 stress 0.1235488 
## Run 104 stress 0.08402375 
## Run 105 stress 0.08402376 
## Run 106 stress 0.1084054 
## Run 107 stress 0.09798198 
## Run 108 stress 0.08117976 
## ... Procrustes: rmse 0.004309779  max resid 0.0166026 
## Run 109 stress 0.0843884 
## Run 110 stress 0.09808506 
## Run 111 stress 0.09932618 
## Run 112 stress 0.0843884 
## Run 113 stress 0.08640085 
## Run 114 stress 0.08250942 
## Run 115 stress 0.08438841 
## Run 116 stress 0.08650007 
## Run 117 stress 0.0811153 
## ... Procrustes: rmse 0.01054004  max resid 0.04318893 
## Run 118 stress 0.08109881 
## ... Procrustes: rmse 0.0001076406  max resid 0.0002857632 
## ... Similar to previous best
## Run 119 stress 0.09886394 
## Run 120 stress 0.08402375 
## Run 121 stress 0.08430131 
## Run 122 stress 0.08321111 
## Run 123 stress 0.09627071 
## Run 124 stress 0.08111521 
## ... Procrustes: rmse 0.01049835  max resid 0.04305509 
## Run 125 stress 0.09627071 
## Run 126 stress 0.0811798 
## ... Procrustes: rmse 0.004321439  max resid 0.0166001 
## Run 127 stress 0.1142538 
## Run 128 stress 0.08660802 
## Run 129 stress 0.09935586 
## Run 130 stress 0.09798195 
## Run 131 stress 0.08236116 
## Run 132 stress 0.08640084 
## Run 133 stress 0.08649989 
## Run 134 stress 0.09627069 
## Run 135 stress 0.09627077 
## Run 136 stress 0.08111521 
## ... Procrustes: rmse 0.01049485  max resid 0.04304178 
## Run 137 stress 0.09690887 
## Run 138 stress 0.08109873 
## ... Procrustes: rmse 3.00337e-06  max resid 7.230412e-06 
## ... Similar to previous best
## Run 139 stress 0.09627085 
## Run 140 stress 0.08430131 
## Run 141 stress 0.08117977 
## ... Procrustes: rmse 0.004311341  max resid 0.01660171 
## Run 142 stress 0.08109882 
## ... Procrustes: rmse 0.0001028858  max resid 0.0002728396 
## ... Similar to previous best
## Run 143 stress 0.09798548 
## Run 144 stress 0.09935579 
## Run 145 stress 0.1147027 
## Run 146 stress 0.08271486 
## Run 147 stress 0.09629936 
## Run 148 stress 0.08111525 
## ... Procrustes: rmse 0.0104657  max resid 0.04294494 
## Run 149 stress 0.0962078 
## Run 150 stress 0.08660801 
## Run 151 stress 0.08640085 
## Run 152 stress 0.08236118 
## Run 153 stress 0.0994714 
## Run 154 stress 0.0843884 
## Run 155 stress 0.08397261 
## Run 156 stress 0.0843884 
## Run 157 stress 0.08640084 
## Run 158 stress 0.08660801 
## Run 159 stress 0.09808714 
## Run 160 stress 0.1139149 
## Run 161 stress 0.08271487 
## Run 162 stress 0.08397264 
## Run 163 stress 0.09690873 
## Run 164 stress 0.08397261 
## Run 165 stress 0.0827149 
## Run 166 stress 0.08430131 
## Run 167 stress 0.123606 
## Run 168 stress 0.09935525 
## Run 169 stress 0.09627064 
## Run 170 stress 0.09919318 
## Run 171 stress 0.1124931 
## Run 172 stress 0.09913075 
## Run 173 stress 0.08250956 
## Run 174 stress 0.1084047 
## Run 175 stress 0.08660805 
## Run 176 stress 0.08117977 
## ... Procrustes: rmse 0.004293627  max resid 0.01660424 
## Run 177 stress 0.08402376 
## Run 178 stress 0.0810988 
## ... Procrustes: rmse 0.0001045664  max resid 0.0002773755 
## ... Similar to previous best
## Run 179 stress 0.08402375 
## Run 180 stress 0.08321116 
## Run 181 stress 0.08109875 
## ... Procrustes: rmse 3.686196e-05  max resid 9.718778e-05 
## ... Similar to previous best
## Run 182 stress 0.08402375 
## Run 183 stress 0.08271488 
## Run 184 stress 0.08660802 
## Run 185 stress 0.08430131 
## Run 186 stress 0.08117976 
## ... Procrustes: rmse 0.004301865  max resid 0.01660227 
## Run 187 stress 0.08271491 
## Run 188 stress 0.08117976 
## ... Procrustes: rmse 0.004299598  max resid 0.01660373 
## Run 189 stress 0.08250941 
## Run 190 stress 0.09627058 
## Run 191 stress 0.08438843 
## Run 192 stress 0.08321116 
## Run 193 stress 0.08271486 
## Run 194 stress 0.1146389 
## Run 195 stress 0.08111526 
## ... Procrustes: rmse 0.0104689  max resid 0.04295234 
## Run 196 stress 0.08660801 
## Run 197 stress 0.09620775 
## Run 198 stress 0.08650004 
## Run 199 stress 0.08111521 
## ... Procrustes: rmse 0.01050016  max resid 0.04305999 
## Run 200 stress 0.08640084 
## Run 201 stress 0.08236118 
## Run 202 stress 0.0843884 
## Run 203 stress 0.08402375 
## Run 204 stress 0.3789361 
## Run 205 stress 0.1236291 
## Run 206 stress 0.1088631 
## Run 207 stress 0.0827149 
## Run 208 stress 0.1084221 
## Run 209 stress 0.0843884 
## Run 210 stress 0.08430131 
## Run 211 stress 0.08284645 
## Run 212 stress 0.08236118 
## Run 213 stress 0.0843884 
## Run 214 stress 0.09945567 
## Run 215 stress 0.08321112 
## Run 216 stress 0.1139145 
## Run 217 stress 0.09882405 
## Run 218 stress 0.09629922 
## Run 219 stress 0.08250941 
## Run 220 stress 0.08402378 
## Run 221 stress 0.08109877 
## ... Procrustes: rmse 7.125408e-05  max resid 0.0001891753 
## ... Similar to previous best
## Run 222 stress 0.08640084 
## Run 223 stress 0.08660801 
## Run 224 stress 0.08430132 
## Run 225 stress 0.08430131 
## Run 226 stress 0.1088632 
## Run 227 stress 0.08321111 
## Run 228 stress 0.1084051 
## Run 229 stress 0.1118079 
## Run 230 stress 0.08118103 
## ... Procrustes: rmse 0.01083629  max resid 0.04092989 
## Run 231 stress 0.08111521 
## ... Procrustes: rmse 0.01048525  max resid 0.04301039 
## Run 232 stress 0.09798537 
## Run 233 stress 0.08117976 
## ... Procrustes: rmse 0.004309148  max resid 0.01660346 
## Run 234 stress 0.09798542 
## Run 235 stress 0.08271488 
## Run 236 stress 0.08402375 
## Run 237 stress 0.08640084 
## Run 238 stress 0.1236455 
## Run 239 stress 0.09627059 
## Run 240 stress 0.108405 
## Run 241 stress 0.08438842 
## Run 242 stress 0.1088229 
## Run 243 stress 0.08117975 
## ... Procrustes: rmse 0.004302599  max resid 0.0166016 
## Run 244 stress 0.08640085 
## Run 245 stress 0.08430131 
## Run 246 stress 0.08321111 
## Run 247 stress 0.08236118 
## Run 248 stress 0.08438841 
## Run 249 stress 0.09620779 
## Run 250 stress 0.08430131 
## Run 251 stress 0.1236457 
## Run 252 stress 0.1236291 
## Run 253 stress 0.08430131 
## Run 254 stress 0.09629916 
## Run 255 stress 0.08109873 
## ... Procrustes: rmse 6.680996e-06  max resid 1.739051e-05 
## ... Similar to previous best
## Run 256 stress 0.08640084 
## Run 257 stress 0.08321111 
## Run 258 stress 0.08430133 
## Run 259 stress 0.1084222 
## Run 260 stress 0.08438841 
## Run 261 stress 0.09629919 
## Run 262 stress 0.1125377 
## Run 263 stress 0.1238107 
## Run 264 stress 0.08430131 
## Run 265 stress 0.09629947 
## Run 266 stress 0.08111525 
## ... Procrustes: rmse 0.01046349  max resid 0.04293398 
## Run 267 stress 0.096909 
## Run 268 stress 0.08430131 
## Run 269 stress 0.08236117 
## Run 270 stress 0.08118103 
## ... Procrustes: rmse 0.01083163  max resid 0.04090956 
## Run 271 stress 0.108422 
## Run 272 stress 0.08640084 
## Run 273 stress 0.08236116 
## Run 274 stress 0.08271488 
## Run 275 stress 0.0843884 
## Run 276 stress 0.08109878 
## ... Procrustes: rmse 0.0001001029  max resid 0.0002687883 
## ... Similar to previous best
## Run 277 stress 0.08236121 
## Run 278 stress 0.08397262 
## Run 279 stress 0.0865 
## Run 280 stress 0.1141638 
## Run 281 stress 0.09935561 
## Run 282 stress 0.09627089 
## Run 283 stress 0.08250943 
## Run 284 stress 0.08660802 
## Run 285 stress 0.08321112 
## Run 286 stress 0.08430131 
## Run 287 stress 0.08438841 
## Run 288 stress 0.09928361 
## Run 289 stress 0.09620792 
## Run 290 stress 0.1087112 
## Run 291 stress 0.09798545 
## Run 292 stress 0.08321115 
## Run 293 stress 0.08111528 
## ... Procrustes: rmse 0.01053613  max resid 0.04317776 
## Run 294 stress 0.08271488 
## Run 295 stress 0.08271489 
## Run 296 stress 0.08402376 
## Run 297 stress 0.09932603 
## Run 298 stress 0.09798547 
## Run 299 stress 0.09808332 
## Run 300 stress 0.08649999 
## Run 301 stress 0.09798533 
## Run 302 stress 0.0993259 
## Run 303 stress 0.108863 
## Run 304 stress 0.108422 
## Run 305 stress 0.08430131 
## Run 306 stress 0.08111522 
## ... Procrustes: rmse 0.01047956  max resid 0.04299024 
## Run 307 stress 0.0843884 
## Run 308 stress 0.08118106 
## ... Procrustes: rmse 0.01085459  max resid 0.04100611 
## Run 309 stress 0.1118078 
## Run 310 stress 0.1088229 
## Run 311 stress 0.09620791 
## Run 312 stress 0.08321111 
## Run 313 stress 0.08438842 
## Run 314 stress 0.09798171 
## Run 315 stress 0.08117975 
## ... Procrustes: rmse 0.00430537  max resid 0.01660399 
## Run 316 stress 0.08236119 
## Run 317 stress 0.08402375 
## Run 318 stress 0.1238107 
## Run 319 stress 0.08236118 
## Run 320 stress 0.108823 
## Run 321 stress 0.0843884 
## Run 322 stress 0.09627078 
## Run 323 stress 0.08236125 
## Run 324 stress 0.1235491 
## Run 325 stress 0.09913078 
## Run 326 stress 0.08397261 
## Run 327 stress 0.08271486 
## Run 328 stress 0.08402375 
## Run 329 stress 0.0843884 
## Run 330 stress 0.09627061 
## Run 331 stress 0.1118074 
## Run 332 stress 0.0843884 
## Run 333 stress 0.1236456 
## Run 334 stress 0.1088229 
## Run 335 stress 0.09798194 
## Run 336 stress 0.0843884 
## Run 337 stress 0.09798567 
## Run 338 stress 0.1236454 
## Run 339 stress 0.08117976 
## ... Procrustes: rmse 0.004297421  max resid 0.01660257 
## Run 340 stress 0.08321115 
## Run 341 stress 0.08660801 
## Run 342 stress 0.08109874 
## ... Procrustes: rmse 4.258835e-05  max resid 9.749116e-05 
## ... Similar to previous best
## Run 343 stress 0.1084049 
## Run 344 stress 0.09690885 
## Run 345 stress 0.08438841 
## Run 346 stress 0.08438841 
## Run 347 stress 0.08640084 
## Run 348 stress 0.08271486 
## Run 349 stress 0.1087113 
## Run 350 stress 0.08321119 
## Run 351 stress 0.1087113 
## Run 352 stress 0.0827149 
## Run 353 stress 0.0843884 
## Run 354 stress 0.08118103 
## ... Procrustes: rmse 0.01083397  max resid 0.04091977 
## Run 355 stress 0.08430132 
## Run 356 stress 0.08321122 
## Run 357 stress 0.1236064 
## Run 358 stress 0.1088633 
## Run 359 stress 0.08402377 
## Run 360 stress 0.08397261 
## Run 361 stress 0.08118108 
## ... Procrustes: rmse 0.01080434  max resid 0.04078814 
## Run 362 stress 0.09690874 
## Run 363 stress 0.1118078 
## Run 364 stress 0.08660801 
## Run 365 stress 0.08660801 
## Run 366 stress 0.08402376 
## Run 367 stress 0.08640084 
## Run 368 stress 0.08397262 
## Run 369 stress 0.08271489 
## Run 370 stress 0.09928163 
## Run 371 stress 0.09627061 
## Run 372 stress 0.09798565 
## Run 373 stress 0.08640084 
## Run 374 stress 0.08402375 
## Run 375 stress 0.09690878 
## Run 376 stress 0.08402375 
## Run 377 stress 0.08640084 
## Run 378 stress 0.08649983 
## Run 379 stress 0.08236117 
## Run 380 stress 0.09690884 
## Run 381 stress 0.08111521 
## ... Procrustes: rmse 0.01050934  max resid 0.04309031 
## Run 382 stress 0.08430133 
## Run 383 stress 0.08111522 
## ... Procrustes: rmse 0.01050697  max resid 0.04308391 
## Run 384 stress 0.08118103 
## ... Procrustes: rmse 0.01082285  max resid 0.04087129 
## Run 385 stress 0.1084049 
## Run 386 stress 0.09627059 
## Run 387 stress 0.08402375 
## Run 388 stress 0.09629912 
## Run 389 stress 0.09945583 
## Run 390 stress 0.1139148 
## Run 391 stress 0.08402375 
## Run 392 stress 0.1084221 
## Run 393 stress 0.08117976 
## ... Procrustes: rmse 0.004306955  max resid 0.0166037 
## Run 394 stress 0.09928391 
## Run 395 stress 0.1088232 
## Run 396 stress 0.08402375 
## Run 397 stress 0.09629918 
## Run 398 stress 0.1084053 
## Run 399 stress 0.08284647 
## Run 400 stress 0.1238108 
## Run 401 stress 0.1236453 
## Run 402 stress 0.08111521 
## ... Procrustes: rmse 0.010487  max resid 0.04301672 
## Run 403 stress 0.108405 
## Run 404 stress 0.08397262 
## Run 405 stress 0.09798177 
## Run 406 stress 0.08438841 
## Run 407 stress 0.08109874 
## ... Procrustes: rmse 4.816943e-05  max resid 0.0001267452 
## ... Similar to previous best
## Run 408 stress 0.09629945 
## Run 409 stress 0.09888525 
## Run 410 stress 0.08430131 
## Run 411 stress 0.08109873 
## ... New best solution
## ... Procrustes: rmse 9.025221e-06  max resid 1.644357e-05 
## ... Similar to previous best
## Run 412 stress 0.09808246 
## Run 413 stress 0.08397262 
## Run 414 stress 0.08660802 
## Run 415 stress 0.08111522 
## ... Procrustes: rmse 0.01050773  max resid 0.04308182 
## Run 416 stress 0.09629922 
## Run 417 stress 0.108422 
## Run 418 stress 0.08660801 
## Run 419 stress 0.08284644 
## Run 420 stress 0.09690887 
## Run 421 stress 0.1118139 
## Run 422 stress 0.08430131 
## Run 423 stress 0.09627058 
## Run 424 stress 0.08250947 
## Run 425 stress 0.08397261 
## Run 426 stress 0.09882419 
## Run 427 stress 0.08250941 
## Run 428 stress 0.08117986 
## ... Procrustes: rmse 0.004329401  max resid 0.01659218 
## Run 429 stress 0.08402376 
## Run 430 stress 0.08397261 
## Run 431 stress 0.08111521 
## ... Procrustes: rmse 0.01050383  max resid 0.04307319 
## Run 432 stress 0.08321116 
## Run 433 stress 0.08250948 
## Run 434 stress 0.09640561 
## Run 435 stress 0.099456 
## Run 436 stress 0.08321116 
## Run 437 stress 0.1088226 
## Run 438 stress 0.08430131 
## Run 439 stress 0.108405 
## Run 440 stress 0.09627062 
## Run 441 stress 0.09627075 
## Run 442 stress 0.108898 
## Run 443 stress 0.08271489 
## Run 444 stress 0.108405 
## Run 445 stress 0.09627078 
## Run 446 stress 0.09629916 
## Run 447 stress 0.08250948 
## Run 448 stress 0.1088983 
## Run 449 stress 0.09629942 
## Run 450 stress 0.08271488 
## Run 451 stress 0.08397263 
## Run 452 stress 0.09798563 
## Run 453 stress 0.08111521 
## ... Procrustes: rmse 0.01049186  max resid 0.04303705 
## Run 454 stress 0.108422 
## Run 455 stress 0.09629939 
## Run 456 stress 0.08650002 
## Run 457 stress 0.08118105 
## ... Procrustes: rmse 0.01081254  max resid 0.04082978 
## Run 458 stress 0.0843884 
## Run 459 stress 0.1236455 
## Run 460 stress 0.08236124 
## Run 461 stress 0.08250942 
## Run 462 stress 0.09690884 
## Run 463 stress 0.08402375 
## Run 464 stress 0.3750929 
## Run 465 stress 0.0825095 
## Run 466 stress 0.09627084 
## Run 467 stress 0.08321111 
## Run 468 stress 0.1087114 
## Run 469 stress 0.08321119 
## Run 470 stress 0.08271487 
## Run 471 stress 0.08438841 
## Run 472 stress 0.0994723 
## Run 473 stress 0.08118107 
## ... Procrustes: rmse 0.01080553  max resid 0.04080067 
## Run 474 stress 0.1236452 
## Run 475 stress 0.0962993 
## Run 476 stress 0.08660802 
## Run 477 stress 0.08236123 
## Run 478 stress 0.08271486 
## Run 479 stress 0.09947205 
## Run 480 stress 0.1236294 
## Run 481 stress 0.1119847 
## Run 482 stress 0.08660801 
## Run 483 stress 0.08236116 
## Run 484 stress 0.1087113 
## Run 485 stress 0.1118075 
## Run 486 stress 0.09629916 
## Run 487 stress 0.08660801 
## Run 488 stress 0.08118103 
## ... Procrustes: rmse 0.01083795  max resid 0.04094069 
## Run 489 stress 0.08397261 
## Run 490 stress 0.1119846 
## Run 491 stress 0.08430131 
## Run 492 stress 0.0964055 
## Run 493 stress 0.08430131 
## Run 494 stress 0.0979853 
## Run 495 stress 0.09629934 
## Run 496 stress 0.09919372 
## Run 497 stress 0.0843884 
## Run 498 stress 0.0843884 
## Run 499 stress 0.08118103 
## ... Procrustes: rmse 0.01082499  max resid 0.04088618 
## Run 500 stress 0.09620781 
## *** Best solution repeated 1 times
# Mixed and stratified lakes
fdbms_NMDS <- metaMDS(fdbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.03166186 
## Run 1 stress 0.02851209 
## ... New best solution
## ... Procrustes: rmse 0.07922733  max resid 0.1693005 
## Run 2 stress 0.03168762 
## Run 3 stress 0.0316618 
## Run 4 stress 0.0285121 
## ... Procrustes: rmse 1.514296e-05  max resid 2.972683e-05 
## ... Similar to previous best
## Run 5 stress 0.0316618 
## Run 6 stress 0.02851513 
## ... Procrustes: rmse 0.001267185  max resid 0.003806004 
## ... Similar to previous best
## Run 7 stress 0.03166178 
## Run 8 stress 0.33414 
## Run 9 stress 0.02535429 
## ... New best solution
## ... Procrustes: rmse 0.04756364  max resid 0.1370097 
## Run 10 stress 0.03168753 
## Run 11 stress 0.05806135 
## Run 12 stress 0.03166179 
## Run 13 stress 0.06371746 
## Run 14 stress 0.05806124 
## Run 15 stress 0.06350014 
## Run 16 stress 0.02851513 
## Run 17 stress 0.02535428 
## ... New best solution
## ... Procrustes: rmse 3.108744e-05  max resid 6.186312e-05 
## ... Similar to previous best
## Run 18 stress 0.02851215 
## Run 19 stress 0.06349877 
## Run 20 stress 0.03168755 
## Run 21 stress 0.03168753 
## Run 22 stress 0.05806316 
## Run 23 stress 0.03168757 
## Run 24 stress 0.06371749 
## Run 25 stress 0.0285123 
## Run 26 stress 0.03166172 
## Run 27 stress 0.03166178 
## Run 28 stress 0.0253836 
## ... Procrustes: rmse 0.001831452  max resid 0.00548686 
## ... Similar to previous best
## Run 29 stress 0.02535429 
## ... Procrustes: rmse 2.638356e-05  max resid 5.289705e-05 
## ... Similar to previous best
## Run 30 stress 0.02851507 
## Run 31 stress 0.0316617 
## Run 32 stress 0.03168758 
## Run 33 stress 0.02851209 
## Run 34 stress 0.05806143 
## Run 35 stress 0.02851217 
## Run 36 stress 0.05806141 
## Run 37 stress 0.02535429 
## ... Procrustes: rmse 2.244448e-05  max resid 4.450746e-05 
## ... Similar to previous best
## Run 38 stress 0.03168762 
## Run 39 stress 0.03166183 
## Run 40 stress 0.02851223 
## Run 41 stress 0.02538362 
## ... Procrustes: rmse 0.001830715  max resid 0.005501741 
## ... Similar to previous best
## Run 42 stress 0.02535429 
## ... Procrustes: rmse 2.172187e-05  max resid 3.571366e-05 
## ... Similar to previous best
## Run 43 stress 0.03166187 
## Run 44 stress 0.0316875 
## Run 45 stress 0.03168766 
## Run 46 stress 0.03166173 
## Run 47 stress 0.03168764 
## Run 48 stress 0.0253543 
## ... Procrustes: rmse 2.92409e-05  max resid 5.655612e-05 
## ... Similar to previous best
## Run 49 stress 0.0316876 
## Run 50 stress 0.0634989 
## Run 51 stress 0.02535428 
## ... New best solution
## ... Procrustes: rmse 5.900016e-06  max resid 1.27082e-05 
## ... Similar to previous best
## Run 52 stress 0.02851217 
## Run 53 stress 0.0316617 
## Run 54 stress 0.02851233 
## Run 55 stress 0.0285121 
## Run 56 stress 0.02851208 
## Run 57 stress 0.03168762 
## Run 58 stress 0.03166173 
## Run 59 stress 0.02851216 
## Run 60 stress 0.02851213 
## Run 61 stress 0.06371732 
## Run 62 stress 0.03166178 
## Run 63 stress 0.0285121 
## Run 64 stress 0.05806333 
## Run 65 stress 0.06372592 
## Run 66 stress 0.06371731 
## Run 67 stress 0.02851511 
## Run 68 stress 0.02851215 
## Run 69 stress 0.0316618 
## Run 70 stress 0.03168752 
## Run 71 stress 0.02851215 
## Run 72 stress 0.03168749 
## Run 73 stress 0.03168758 
## Run 74 stress 0.03166171 
## Run 75 stress 0.02851211 
## Run 76 stress 0.05806327 
## Run 77 stress 0.2628417 
## Run 78 stress 0.02538361 
## ... Procrustes: rmse 0.001830692  max resid 0.005497565 
## ... Similar to previous best
## Run 79 stress 0.02535429 
## ... Procrustes: rmse 3.000102e-05  max resid 6.011935e-05 
## ... Similar to previous best
## Run 80 stress 0.06371979 
## Run 81 stress 0.02851209 
## Run 82 stress 0.03168767 
## Run 83 stress 0.05806123 
## Run 84 stress 0.03168749 
## Run 85 stress 0.0253543 
## ... Procrustes: rmse 4.2481e-05  max resid 8.989359e-05 
## ... Similar to previous best
## Run 86 stress 0.02851209 
## Run 87 stress 0.05806123 
## Run 88 stress 0.02851208 
## Run 89 stress 0.0253836 
## ... Procrustes: rmse 0.001830469  max resid 0.005490058 
## ... Similar to previous best
## Run 90 stress 0.03166181 
## Run 91 stress 0.0285151 
## Run 92 stress 0.02851215 
## Run 93 stress 0.02851506 
## Run 94 stress 0.02851217 
## Run 95 stress 0.02535428 
## ... Procrustes: rmse 7.843544e-06  max resid 1.43372e-05 
## ... Similar to previous best
## Run 96 stress 0.02851212 
## Run 97 stress 0.03166174 
## Run 98 stress 0.03168751 
## Run 99 stress 0.05806142 
## Run 100 stress 0.05806317 
## Run 101 stress 0.03168772 
## Run 102 stress 0.03166177 
## Run 103 stress 0.03168761 
## Run 104 stress 0.02851513 
## Run 105 stress 0.0580633 
## Run 106 stress 0.05806343 
## Run 107 stress 0.06371978 
## Run 108 stress 0.03168764 
## Run 109 stress 0.06371981 
## Run 110 stress 0.02851216 
## Run 111 stress 0.03168762 
## Run 112 stress 0.05806127 
## Run 113 stress 0.02538361 
## ... Procrustes: rmse 0.001830498  max resid 0.005496827 
## ... Similar to previous best
## Run 114 stress 0.03166183 
## Run 115 stress 0.06349935 
## Run 116 stress 0.02535429 
## ... Procrustes: rmse 2.695217e-05  max resid 5.867927e-05 
## ... Similar to previous best
## Run 117 stress 0.02851506 
## Run 118 stress 0.0316875 
## Run 119 stress 0.02851222 
## Run 120 stress 0.03168758 
## Run 121 stress 0.02538359 
## ... Procrustes: rmse 0.001832479  max resid 0.005464221 
## ... Similar to previous best
## Run 122 stress 0.0637173 
## Run 123 stress 0.02538359 
## ... Procrustes: rmse 0.001830991  max resid 0.005481569 
## ... Similar to previous best
## Run 124 stress 0.06349853 
## Run 125 stress 0.05806325 
## Run 126 stress 0.03168751 
## Run 127 stress 0.06349955 
## Run 128 stress 0.05806136 
## Run 129 stress 0.03166174 
## Run 130 stress 0.03168756 
## Run 131 stress 0.02538361 
## ... Procrustes: rmse 0.001830464  max resid 0.005496608 
## ... Similar to previous best
## Run 132 stress 0.05806123 
## Run 133 stress 0.06349903 
## Run 134 stress 0.0635 
## Run 135 stress 0.06349853 
## Run 136 stress 0.06371736 
## Run 137 stress 0.02538359 
## ... Procrustes: rmse 0.00183402  max resid 0.005464012 
## ... Similar to previous best
## Run 138 stress 0.02851511 
## Run 139 stress 0.02851504 
## Run 140 stress 0.0253836 
## ... Procrustes: rmse 0.001831658  max resid 0.005482236 
## ... Similar to previous best
## Run 141 stress 0.0316617 
## Run 142 stress 0.02851218 
## Run 143 stress 0.03168759 
## Run 144 stress 0.02535429 
## ... Procrustes: rmse 3.522934e-05  max resid 7.173562e-05 
## ... Similar to previous best
## Run 145 stress 0.0637198 
## Run 146 stress 0.0253543 
## ... Procrustes: rmse 4.281438e-05  max resid 9.304005e-05 
## ... Similar to previous best
## Run 147 stress 0.02538358 
## ... Procrustes: rmse 0.001831859  max resid 0.005466564 
## ... Similar to previous best
## Run 148 stress 0.03168766 
## Run 149 stress 0.06349991 
## Run 150 stress 0.02535428 
## ... Procrustes: rmse 2.031218e-05  max resid 4.262152e-05 
## ... Similar to previous best
## Run 151 stress 0.03168749 
## Run 152 stress 0.03166181 
## Run 153 stress 0.03168758 
## Run 154 stress 0.02851508 
## Run 155 stress 0.02851209 
## Run 156 stress 0.05806328 
## Run 157 stress 0.02851505 
## Run 158 stress 0.03166174 
## Run 159 stress 0.05806137 
## Run 160 stress 0.02538359 
## ... Procrustes: rmse 0.00183137  max resid 0.005474215 
## ... Similar to previous best
## Run 161 stress 0.06350012 
## Run 162 stress 0.02538359 
## ... Procrustes: rmse 0.001834885  max resid 0.005440279 
## ... Similar to previous best
## Run 163 stress 0.06371982 
## Run 164 stress 0.03168756 
## Run 165 stress 0.03166177 
## Run 166 stress 0.03168767 
## Run 167 stress 0.02851209 
## Run 168 stress 0.05806127 
## Run 169 stress 0.06349985 
## Run 170 stress 0.02851207 
## Run 171 stress 0.05806321 
## Run 172 stress 0.03168768 
## Run 173 stress 0.06371997 
## Run 174 stress 0.02851213 
## Run 175 stress 0.05806327 
## Run 176 stress 0.02851207 
## Run 177 stress 0.05806316 
## Run 178 stress 0.02538358 
## ... Procrustes: rmse 0.001832777  max resid 0.00545537 
## ... Similar to previous best
## Run 179 stress 0.05806125 
## Run 180 stress 0.03166172 
## Run 181 stress 0.02851213 
## Run 182 stress 0.02538361 
## ... Procrustes: rmse 0.001831256  max resid 0.005469912 
## ... Similar to previous best
## Run 183 stress 0.05806135 
## Run 184 stress 0.03168758 
## Run 185 stress 0.02535429 
## ... Procrustes: rmse 2.305199e-05  max resid 3.912405e-05 
## ... Similar to previous best
## Run 186 stress 0.02851507 
## Run 187 stress 0.02538358 
## ... Procrustes: rmse 0.001832168  max resid 0.005463448 
## ... Similar to previous best
## Run 188 stress 0.02538359 
## ... Procrustes: rmse 0.001831279  max resid 0.00548199 
## ... Similar to previous best
## Run 189 stress 0.02538358 
## ... Procrustes: rmse 0.001832133  max resid 0.005466809 
## ... Similar to previous best
## Run 190 stress 0.0316618 
## Run 191 stress 0.02535432 
## ... Procrustes: rmse 6.769411e-05  max resid 0.0001369824 
## ... Similar to previous best
## Run 192 stress 0.06349983 
## Run 193 stress 0.03166172 
## Run 194 stress 0.05806132 
## Run 195 stress 0.03166176 
## Run 196 stress 0.06349928 
## Run 197 stress 0.03166183 
## Run 198 stress 0.02538358 
## ... Procrustes: rmse 0.001833236  max resid 0.005453989 
## ... Similar to previous best
## Run 199 stress 0.02535431 
## ... Procrustes: rmse 5.191173e-05  max resid 0.0001077756 
## ... Similar to previous best
## Run 200 stress 0.03166174 
## Run 201 stress 0.3546862 
## Run 202 stress 0.03168752 
## Run 203 stress 0.0316618 
## Run 204 stress 0.02851208 
## Run 205 stress 0.02851509 
## Run 206 stress 0.05806134 
## Run 207 stress 0.0580613 
## Run 208 stress 0.02851504 
## Run 209 stress 0.02851512 
## Run 210 stress 0.02538359 
## ... Procrustes: rmse 0.001831127  max resid 0.005481408 
## ... Similar to previous best
## Run 211 stress 0.02851507 
## Run 212 stress 0.03168749 
## Run 213 stress 0.06371734 
## Run 214 stress 0.03168765 
## Run 215 stress 0.0316618 
## Run 216 stress 0.3473318 
## Run 217 stress 0.0316876 
## Run 218 stress 0.03168759 
## Run 219 stress 0.03166177 
## Run 220 stress 0.03168759 
## Run 221 stress 0.06371736 
## Run 222 stress 0.0253836 
## ... Procrustes: rmse 0.001830666  max resid 0.005493253 
## ... Similar to previous best
## Run 223 stress 0.02535429 
## ... Procrustes: rmse 3.244693e-05  max resid 6.565e-05 
## ... Similar to previous best
## Run 224 stress 0.03168751 
## Run 225 stress 0.02538358 
## ... Procrustes: rmse 0.001831589  max resid 0.005463416 
## ... Similar to previous best
## Run 226 stress 0.02851213 
## Run 227 stress 0.02851213 
## Run 228 stress 0.02538359 
## ... Procrustes: rmse 0.001831788  max resid 0.005470091 
## ... Similar to previous best
## Run 229 stress 0.02851511 
## Run 230 stress 0.02535428 
## ... Procrustes: rmse 2.025532e-05  max resid 4.157459e-05 
## ... Similar to previous best
## Run 231 stress 0.0285151 
## Run 232 stress 0.02535429 
## ... Procrustes: rmse 3.183561e-05  max resid 6.53925e-05 
## ... Similar to previous best
## Run 233 stress 0.03168754 
## Run 234 stress 0.02538361 
## ... Procrustes: rmse 0.001830389  max resid 0.005496527 
## ... Similar to previous best
## Run 235 stress 0.06349915 
## Run 236 stress 0.02538358 
## ... Procrustes: rmse 0.001833855  max resid 0.005444263 
## ... Similar to previous best
## Run 237 stress 0.02851505 
## Run 238 stress 0.06371737 
## Run 239 stress 0.03168757 
## Run 240 stress 0.0253836 
## ... Procrustes: rmse 0.001830369  max resid 0.005488817 
## ... Similar to previous best
## Run 241 stress 0.02851504 
## Run 242 stress 0.02851512 
## Run 243 stress 0.02851211 
## Run 244 stress 0.02535428 
## ... Procrustes: rmse 3.606138e-06  max resid 5.350879e-06 
## ... Similar to previous best
## Run 245 stress 0.02538358 
## ... Procrustes: rmse 0.00183321  max resid 0.005462097 
## ... Similar to previous best
## Run 246 stress 0.02535429 
## ... Procrustes: rmse 3.644123e-05  max resid 7.440469e-05 
## ... Similar to previous best
## Run 247 stress 0.02851512 
## Run 248 stress 0.02851213 
## Run 249 stress 0.02851214 
## Run 250 stress 0.02851209 
## Run 251 stress 0.06349866 
## Run 252 stress 0.06349951 
## Run 253 stress 0.02535429 
## ... Procrustes: rmse 3.226369e-05  max resid 6.476581e-05 
## ... Similar to previous best
## Run 254 stress 0.0253543 
## ... Procrustes: rmse 4.331683e-05  max resid 7.70267e-05 
## ... Similar to previous best
## Run 255 stress 0.06349891 
## Run 256 stress 0.02851506 
## Run 257 stress 0.02535429 
## ... Procrustes: rmse 3.090988e-05  max resid 6.307064e-05 
## ... Similar to previous best
## Run 258 stress 0.3620359 
## Run 259 stress 0.05806125 
## Run 260 stress 0.02851209 
## Run 261 stress 0.03166178 
## Run 262 stress 0.02851212 
## Run 263 stress 0.02851512 
## Run 264 stress 0.06349937 
## Run 265 stress 0.0316876 
## Run 266 stress 0.03168755 
## Run 267 stress 0.02535429 
## ... Procrustes: rmse 2.418447e-05  max resid 4.916784e-05 
## ... Similar to previous best
## Run 268 stress 0.05806328 
## Run 269 stress 0.02851517 
## Run 270 stress 0.03168752 
## Run 271 stress 0.02851218 
## Run 272 stress 0.05806129 
## Run 273 stress 0.03166181 
## Run 274 stress 0.02851513 
## Run 275 stress 0.03168749 
## Run 276 stress 0.05806135 
## Run 277 stress 0.02535429 
## ... Procrustes: rmse 3.167425e-05  max resid 6.039304e-05 
## ... Similar to previous best
## Run 278 stress 0.03168751 
## Run 279 stress 0.0316875 
## Run 280 stress 0.02851214 
## Run 281 stress 0.03168769 
## Run 282 stress 0.03168765 
## Run 283 stress 0.02851508 
## Run 284 stress 0.02851504 
## Run 285 stress 0.02535429 
## ... Procrustes: rmse 3.272734e-05  max resid 6.651416e-05 
## ... Similar to previous best
## Run 286 stress 0.06349985 
## Run 287 stress 0.02538358 
## ... Procrustes: rmse 0.001832315  max resid 0.005464208 
## ... Similar to previous best
## Run 288 stress 0.02851505 
## Run 289 stress 0.02535429 
## ... Procrustes: rmse 3.03901e-05  max resid 5.156245e-05 
## ... Similar to previous best
## Run 290 stress 0.02851512 
## Run 291 stress 0.02851507 
## Run 292 stress 0.2294979 
## Run 293 stress 0.03168762 
## Run 294 stress 0.02851214 
## Run 295 stress 0.02538359 
## ... Procrustes: rmse 0.001831853  max resid 0.005464928 
## ... Similar to previous best
## Run 296 stress 0.06349861 
## Run 297 stress 0.03166179 
## Run 298 stress 0.06349852 
## Run 299 stress 0.02851215 
## Run 300 stress 0.03168761 
## Run 301 stress 0.05806317 
## Run 302 stress 0.03168749 
## Run 303 stress 0.03168755 
## Run 304 stress 0.03166182 
## Run 305 stress 0.0285121 
## Run 306 stress 0.03168751 
## Run 307 stress 0.2294979 
## Run 308 stress 0.02538358 
## ... Procrustes: rmse 0.00183158  max resid 0.005472102 
## ... Similar to previous best
## Run 309 stress 0.02851209 
## Run 310 stress 0.02851506 
## Run 311 stress 0.02538361 
## ... Procrustes: rmse 0.001830754  max resid 0.005499348 
## ... Similar to previous best
## Run 312 stress 0.0580632 
## Run 313 stress 0.05806128 
## Run 314 stress 0.02851222 
## Run 315 stress 0.03166171 
## Run 316 stress 0.02851514 
## Run 317 stress 0.02535428 
## ... Procrustes: rmse 1.659907e-05  max resid 3.362968e-05 
## ... Similar to previous best
## Run 318 stress 0.03166174 
## Run 319 stress 0.06371742 
## Run 320 stress 0.02535428 
## ... Procrustes: rmse 1.882694e-05  max resid 3.822137e-05 
## ... Similar to previous best
## Run 321 stress 0.02851211 
## Run 322 stress 0.03168769 
## Run 323 stress 0.05806123 
## Run 324 stress 0.03168763 
## Run 325 stress 0.02535429 
## ... Procrustes: rmse 3.797989e-05  max resid 7.706553e-05 
## ... Similar to previous best
## Run 326 stress 0.0285151 
## Run 327 stress 0.0316618 
## Run 328 stress 0.03168758 
## Run 329 stress 0.02851508 
## Run 330 stress 0.02538359 
## ... Procrustes: rmse 0.001831348  max resid 0.005474535 
## ... Similar to previous best
## Run 331 stress 0.06349906 
## Run 332 stress 0.06371992 
## Run 333 stress 0.03168753 
## Run 334 stress 0.06349979 
## Run 335 stress 0.03166176 
## Run 336 stress 0.03166176 
## Run 337 stress 0.03168768 
## Run 338 stress 0.0285121 
## Run 339 stress 0.05806125 
## Run 340 stress 0.0634994 
## Run 341 stress 0.05806147 
## Run 342 stress 0.02851212 
## Run 343 stress 0.0316618 
## Run 344 stress 0.06349952 
## Run 345 stress 0.02851513 
## Run 346 stress 0.05806317 
## Run 347 stress 0.03168756 
## Run 348 stress 0.06371981 
## Run 349 stress 0.05806316 
## Run 350 stress 0.03166177 
## Run 351 stress 0.03168749 
## Run 352 stress 0.02851214 
## Run 353 stress 0.03166174 
## Run 354 stress 0.0285121 
## Run 355 stress 0.02851214 
## Run 356 stress 0.03166174 
## Run 357 stress 0.06349986 
## Run 358 stress 0.06349894 
## Run 359 stress 0.03166178 
## Run 360 stress 0.06349977 
## Run 361 stress 0.02538777 
## ... Procrustes: rmse 0.001398432  max resid 0.004023446 
## ... Similar to previous best
## Run 362 stress 0.02851507 
## Run 363 stress 0.03166174 
## Run 364 stress 0.03168761 
## Run 365 stress 0.05806338 
## Run 366 stress 0.02851508 
## Run 367 stress 0.03168752 
## Run 368 stress 0.03168759 
## Run 369 stress 0.06349854 
## Run 370 stress 0.0285121 
## Run 371 stress 0.0316617 
## Run 372 stress 0.02538359 
## ... Procrustes: rmse 0.001831363  max resid 0.005474545 
## ... Similar to previous best
## Run 373 stress 0.02851212 
## Run 374 stress 0.03168755 
## Run 375 stress 0.06371984 
## Run 376 stress 0.03166174 
## Run 377 stress 0.0253543 
## ... Procrustes: rmse 3.620161e-05  max resid 7.869543e-05 
## ... Similar to previous best
## Run 378 stress 0.02851512 
## Run 379 stress 0.02538359 
## ... Procrustes: rmse 0.001833639  max resid 0.005485341 
## ... Similar to previous best
## Run 380 stress 0.03166171 
## Run 381 stress 0.02851214 
## Run 382 stress 0.03166173 
## Run 383 stress 0.02535428 
## ... Procrustes: rmse 1.132787e-05  max resid 2.281775e-05 
## ... Similar to previous best
## Run 384 stress 0.03168749 
## Run 385 stress 0.02851508 
## Run 386 stress 0.02851511 
## Run 387 stress 0.06349868 
## Run 388 stress 0.02851513 
## Run 389 stress 0.02535428 
## ... Procrustes: rmse 6.44659e-06  max resid 1.319763e-05 
## ... Similar to previous best
## Run 390 stress 0.3622592 
## Run 391 stress 0.0580633 
## Run 392 stress 0.02851215 
## Run 393 stress 0.03168749 
## Run 394 stress 0.06349933 
## Run 395 stress 0.02851508 
## Run 396 stress 0.02538358 
## ... Procrustes: rmse 0.001834002  max resid 0.005445392 
## ... Similar to previous best
## Run 397 stress 0.03166171 
## Run 398 stress 0.03168769 
## Run 399 stress 0.02535428 
## ... Procrustes: rmse 1.633978e-05  max resid 3.252825e-05 
## ... Similar to previous best
## Run 400 stress 0.03168753 
## Run 401 stress 0.02535429 
## ... Procrustes: rmse 2.964208e-05  max resid 5.983201e-05 
## ... Similar to previous best
## Run 402 stress 0.0316617 
## Run 403 stress 0.05806132 
## Run 404 stress 0.06371731 
## Run 405 stress 0.06349896 
## Run 406 stress 0.06371748 
## Run 407 stress 0.06349969 
## Run 408 stress 0.02851507 
## Run 409 stress 0.02535432 
## ... Procrustes: rmse 6.054215e-05  max resid 0.0001241452 
## ... Similar to previous best
## Run 410 stress 0.02851214 
## Run 411 stress 0.03166174 
## Run 412 stress 0.0580613 
## Run 413 stress 0.02851212 
## Run 414 stress 0.02851208 
## Run 415 stress 0.06371978 
## Run 416 stress 0.02538358 
## ... Procrustes: rmse 0.001832032  max resid 0.005465115 
## ... Similar to previous best
## Run 417 stress 0.02851511 
## Run 418 stress 0.05806126 
## Run 419 stress 0.06371732 
## Run 420 stress 0.0253543 
## ... Procrustes: rmse 4.006433e-05  max resid 8.307193e-05 
## ... Similar to previous best
## Run 421 stress 0.0253836 
## ... Procrustes: rmse 0.001831906  max resid 0.005471928 
## ... Similar to previous best
## Run 422 stress 0.03168765 
## Run 423 stress 0.02851511 
## Run 424 stress 0.02851218 
## Run 425 stress 0.02851217 
## Run 426 stress 0.02538359 
## ... Procrustes: rmse 0.001831833  max resid 0.005464976 
## ... Similar to previous best
## Run 427 stress 0.0316617 
## Run 428 stress 0.02538362 
## ... Procrustes: rmse 0.001830175  max resid 0.005500347 
## ... Similar to previous best
## Run 429 stress 0.03168749 
## Run 430 stress 0.02851506 
## Run 431 stress 0.05806326 
## Run 432 stress 0.02851506 
## Run 433 stress 0.02535429 
## ... Procrustes: rmse 3.906272e-05  max resid 6.912478e-05 
## ... Similar to previous best
## Run 434 stress 0.02851508 
## Run 435 stress 0.02851216 
## Run 436 stress 0.03168754 
## Run 437 stress 0.02851512 
## Run 438 stress 0.03168757 
## Run 439 stress 0.05806316 
## Run 440 stress 0.0253836 
## ... Procrustes: rmse 0.001831111  max resid 0.005486364 
## ... Similar to previous best
## Run 441 stress 0.02851227 
## Run 442 stress 0.05806324 
## Run 443 stress 0.0316617 
## Run 444 stress 0.02538358 
## ... Procrustes: rmse 0.001832121  max resid 0.005468915 
## ... Similar to previous best
## Run 445 stress 0.0253543 
## ... Procrustes: rmse 4.414572e-05  max resid 9.029298e-05 
## ... Similar to previous best
## Run 446 stress 0.03166177 
## Run 447 stress 0.03168766 
## Run 448 stress 0.06349945 
## Run 449 stress 0.02535431 
## ... Procrustes: rmse 5.3912e-05  max resid 0.0001101012 
## ... Similar to previous best
## Run 450 stress 0.02851214 
## Run 451 stress 0.05806317 
## Run 452 stress 0.02851218 
## Run 453 stress 0.02851511 
## Run 454 stress 0.02851208 
## Run 455 stress 0.0253836 
## ... Procrustes: rmse 0.001835897  max resid 0.005437249 
## ... Similar to previous best
## Run 456 stress 0.03168749 
## Run 457 stress 0.02851211 
## Run 458 stress 0.02851212 
## Run 459 stress 0.0253543 
## ... Procrustes: rmse 4.222429e-05  max resid 8.609955e-05 
## ... Similar to previous best
## Run 460 stress 0.02538359 
## ... Procrustes: rmse 0.001831543  max resid 0.005476589 
## ... Similar to previous best
## Run 461 stress 0.0285151 
## Run 462 stress 0.02535431 
## ... Procrustes: rmse 5.926941e-05  max resid 0.0001214827 
## ... Similar to previous best
## Run 463 stress 0.02851212 
## Run 464 stress 0.02851213 
## Run 465 stress 0.06349903 
## Run 466 stress 0.02851506 
## Run 467 stress 0.02851504 
## Run 468 stress 0.02851508 
## Run 469 stress 0.06349893 
## Run 470 stress 0.02538358 
## ... Procrustes: rmse 0.001832505  max resid 0.005461714 
## ... Similar to previous best
## Run 471 stress 0.02538361 
## ... Procrustes: rmse 0.001830363  max resid 0.005499605 
## ... Similar to previous best
## Run 472 stress 0.0316875 
## Run 473 stress 0.03166172 
## Run 474 stress 0.02851211 
## Run 475 stress 0.03168757 
## Run 476 stress 0.03168753 
## Run 477 stress 0.03166178 
## Run 478 stress 0.02851509 
## Run 479 stress 0.03168749 
## Run 480 stress 0.02851213 
## Run 481 stress 0.02535428 
## ... Procrustes: rmse 1.898772e-05  max resid 3.872611e-05 
## ... Similar to previous best
## Run 482 stress 0.02538362 
## ... Procrustes: rmse 0.001830027  max resid 0.005502889 
## ... Similar to previous best
## Run 483 stress 0.05806136 
## Run 484 stress 0.02851506 
## Run 485 stress 0.02851215 
## Run 486 stress 0.0253836 
## ... Procrustes: rmse 0.001830581  max resid 0.005490723 
## ... Similar to previous best
## Run 487 stress 0.0316617 
## Run 488 stress 0.02851213 
## Run 489 stress 0.02538358 
## ... Procrustes: rmse 0.001832742  max resid 0.005456316 
## ... Similar to previous best
## Run 490 stress 0.02851509 
## Run 491 stress 0.02538361 
## ... Procrustes: rmse 0.001837543  max resid 0.005414984 
## ... Similar to previous best
## Run 492 stress 0.05806318 
## Run 493 stress 0.02851508 
## Run 494 stress 0.06349943 
## Run 495 stress 0.02535429 
## ... Procrustes: rmse 2.899477e-05  max resid 5.702369e-05 
## ... Similar to previous best
## Run 496 stress 0.02851513 
## Run 497 stress 0.03166172 
## Run 498 stress 0.06349958 
## Run 499 stress 0.03166185 
## Run 500 stress 0.05806334 
## *** Best solution repeated 88 times
# Ocean sites and mixed lakes
fdbom_NMDS <- metaMDS(fdbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.04023331 
## Run 1 stress 0.04023339 
## ... Procrustes: rmse 0.0001187313  max resid 0.0001831005 
## ... Similar to previous best
## Run 2 stress 0.04083702 
## Run 3 stress 0.04023333 
## ... Procrustes: rmse 4.74298e-05  max resid 7.359276e-05 
## ... Similar to previous best
## Run 4 stress 0.04083704 
## Run 5 stress 0.04023341 
## ... Procrustes: rmse 0.0001301914  max resid 0.0002021424 
## ... Similar to previous best
## Run 6 stress 0.109097 
## Run 7 stress 0.04023332 
## ... Procrustes: rmse 4.039619e-05  max resid 6.257615e-05 
## ... Similar to previous best
## Run 8 stress 0.04023331 
## ... New best solution
## ... Procrustes: rmse 4.801912e-05  max resid 8.504421e-05 
## ... Similar to previous best
## Run 9 stress 0.0402334 
## ... Procrustes: rmse 0.000125597  max resid 0.0001978565 
## ... Similar to previous best
## Run 10 stress 0.04023335 
## ... Procrustes: rmse 8.175437e-05  max resid 0.0001308679 
## ... Similar to previous best
## Run 11 stress 0.04083702 
## Run 12 stress 0.04083704 
## Run 13 stress 0.04023337 
## ... Procrustes: rmse 0.0001370377  max resid 0.0002226323 
## ... Similar to previous best
## Run 14 stress 0.04023331 
## ... Procrustes: rmse 5.736005e-05  max resid 9.85945e-05 
## ... Similar to previous best
## Run 15 stress 0.04083704 
## Run 16 stress 0.04023334 
## ... Procrustes: rmse 7.184637e-05  max resid 0.0001154179 
## ... Similar to previous best
## Run 17 stress 0.04023337 
## ... Procrustes: rmse 9.011874e-05  max resid 0.000142411 
## ... Similar to previous best
## Run 18 stress 0.04023339 
## ... Procrustes: rmse 0.0001230276  max resid 0.0001940702 
## ... Similar to previous best
## Run 19 stress 0.04023335 
## ... Procrustes: rmse 8.076518e-05  max resid 0.00012859 
## ... Similar to previous best
## Run 20 stress 0.04083707 
## Run 21 stress 0.04083702 
## Run 22 stress 0.04023337 
## ... Procrustes: rmse 0.0001041851  max resid 0.0001648941 
## ... Similar to previous best
## Run 23 stress 0.04023333 
## ... Procrustes: rmse 5.9724e-05  max resid 9.653942e-05 
## ... Similar to previous best
## Run 24 stress 0.04023339 
## ... Procrustes: rmse 9.089591e-05  max resid 0.0001444226 
## ... Similar to previous best
## Run 25 stress 0.04083705 
## Run 26 stress 0.04083702 
## Run 27 stress 0.04023337 
## ... Procrustes: rmse 0.0001453502  max resid 0.0002355294 
## ... Similar to previous best
## Run 28 stress 0.04083703 
## Run 29 stress 0.04023331 
## ... New best solution
## ... Procrustes: rmse 2.78394e-05  max resid 5.204075e-05 
## ... Similar to previous best
## Run 30 stress 0.04023335 
## ... Procrustes: rmse 0.0001157195  max resid 0.0001795751 
## ... Similar to previous best
## Run 31 stress 0.04083704 
## Run 32 stress 0.04023337 
## ... Procrustes: rmse 0.0001346592  max resid 0.000218378 
## ... Similar to previous best
## Run 33 stress 0.04083703 
## Run 34 stress 0.04083702 
## Run 35 stress 0.04083702 
## Run 36 stress 0.04083702 
## Run 37 stress 0.04023334 
## ... Procrustes: rmse 8.202198e-05  max resid 0.0001270593 
## ... Similar to previous best
## Run 38 stress 0.04083703 
## Run 39 stress 0.04083702 
## Run 40 stress 0.04023331 
## ... Procrustes: rmse 2.764634e-05  max resid 4.398069e-05 
## ... Similar to previous best
## Run 41 stress 0.04023337 
## ... Procrustes: rmse 0.0001204234  max resid 0.0001855804 
## ... Similar to previous best
## Run 42 stress 0.04023342 
## ... Procrustes: rmse 0.0001651489  max resid 0.0002559896 
## ... Similar to previous best
## Run 43 stress 0.04083703 
## Run 44 stress 0.04083707 
## Run 45 stress 0.04023332 
## ... Procrustes: rmse 5.040942e-05  max resid 7.853528e-05 
## ... Similar to previous best
## Run 46 stress 0.04083704 
## Run 47 stress 0.04023331 
## ... Procrustes: rmse 3.941318e-05  max resid 6.08381e-05 
## ... Similar to previous best
## Run 48 stress 0.04023341 
## ... Procrustes: rmse 0.0001563171  max resid 0.000243037 
## ... Similar to previous best
## Run 49 stress 0.04083702 
## Run 50 stress 0.04083703 
## Run 51 stress 0.04083703 
## Run 52 stress 0.0402334 
## ... Procrustes: rmse 0.0001635312  max resid 0.0002542286 
## ... Similar to previous best
## Run 53 stress 0.04083703 
## Run 54 stress 0.04083703 
## Run 55 stress 0.04083702 
## Run 56 stress 0.04023343 
## ... Procrustes: rmse 0.0001716212  max resid 0.0002664846 
## ... Similar to previous best
## Run 57 stress 0.04083703 
## Run 58 stress 0.04023338 
## ... Procrustes: rmse 0.0001366796  max resid 0.000212554 
## ... Similar to previous best
## Run 59 stress 0.04083706 
## Run 60 stress 0.04023334 
## ... Procrustes: rmse 8.265487e-05  max resid 0.0001280417 
## ... Similar to previous best
## Run 61 stress 0.04023337 
## ... Procrustes: rmse 0.0001240576  max resid 0.0001923602 
## ... Similar to previous best
## Run 62 stress 0.04023331 
## ... Procrustes: rmse 5.055041e-05  max resid 7.852309e-05 
## ... Similar to previous best
## Run 63 stress 0.04083702 
## Run 64 stress 0.04083703 
## Run 65 stress 0.04023332 
## ... Procrustes: rmse 7.06227e-05  max resid 0.0001095354 
## ... Similar to previous best
## Run 66 stress 0.04083704 
## Run 67 stress 0.04083702 
## Run 68 stress 0.0402334 
## ... Procrustes: rmse 0.0001460206  max resid 0.0002256159 
## ... Similar to previous best
## Run 69 stress 0.04083705 
## Run 70 stress 0.3329613 
## Run 71 stress 0.0402334 
## ... Procrustes: rmse 0.0001490882  max resid 0.000231996 
## ... Similar to previous best
## Run 72 stress 0.04023334 
## ... Procrustes: rmse 0.0001010297  max resid 0.0001570567 
## ... Similar to previous best
## Run 73 stress 0.04023332 
## ... Procrustes: rmse 6.134434e-05  max resid 9.524567e-05 
## ... Similar to previous best
## Run 74 stress 0.04023336 
## ... Procrustes: rmse 0.0001012532  max resid 0.0001568808 
## ... Similar to previous best
## Run 75 stress 0.04083704 
## Run 76 stress 0.04023339 
## ... Procrustes: rmse 0.0001456735  max resid 0.000232754 
## ... Similar to previous best
## Run 77 stress 0.04023332 
## ... Procrustes: rmse 6.11653e-05  max resid 9.429714e-05 
## ... Similar to previous best
## Run 78 stress 0.04023342 
## ... Procrustes: rmse 0.000163007  max resid 0.0002523333 
## ... Similar to previous best
## Run 79 stress 0.109096 
## Run 80 stress 0.04023338 
## ... Procrustes: rmse 0.0001321253  max resid 0.0002050322 
## ... Similar to previous best
## Run 81 stress 0.04083702 
## Run 82 stress 0.04083703 
## Run 83 stress 0.04023335 
## ... Procrustes: rmse 0.0001106748  max resid 0.0001719983 
## ... Similar to previous best
## Run 84 stress 0.04023333 
## ... Procrustes: rmse 7.05055e-05  max resid 0.0001091095 
## ... Similar to previous best
## Run 85 stress 0.04023343 
## ... Procrustes: rmse 0.0001742304  max resid 0.000269673 
## ... Similar to previous best
## Run 86 stress 0.04083702 
## Run 87 stress 0.04083704 
## Run 88 stress 0.04083702 
## Run 89 stress 0.04023332 
## ... Procrustes: rmse 4.315491e-05  max resid 6.622367e-05 
## ... Similar to previous best
## Run 90 stress 0.04023335 
## ... Procrustes: rmse 9.994011e-05  max resid 0.0001564659 
## ... Similar to previous best
## Run 91 stress 0.04023338 
## ... Procrustes: rmse 0.0001216618  max resid 0.000189088 
## ... Similar to previous best
## Run 92 stress 0.0402334 
## ... Procrustes: rmse 0.0001607261  max resid 0.0002498629 
## ... Similar to previous best
## Run 93 stress 0.04023335 
## ... Procrustes: rmse 0.0001048791  max resid 0.0001620989 
## ... Similar to previous best
## Run 94 stress 0.04023343 
## ... Procrustes: rmse 0.0001565767  max resid 0.0002427095 
## ... Similar to previous best
## Run 95 stress 0.04083704 
## Run 96 stress 0.04083704 
## Run 97 stress 0.04083705 
## Run 98 stress 0.04023333 
## ... Procrustes: rmse 7.810999e-05  max resid 0.0001216668 
## ... Similar to previous best
## Run 99 stress 0.04083702 
## Run 100 stress 0.04083705 
## Run 101 stress 0.04023335 
## ... Procrustes: rmse 0.0001131702  max resid 0.0001760536 
## ... Similar to previous best
## Run 102 stress 0.04083704 
## Run 103 stress 0.04083707 
## Run 104 stress 0.04023334 
## ... Procrustes: rmse 0.0001024943  max resid 0.0001594827 
## ... Similar to previous best
## Run 105 stress 0.04023333 
## ... Procrustes: rmse 7.949322e-05  max resid 0.0001235959 
## ... Similar to previous best
## Run 106 stress 0.04083706 
## Run 107 stress 0.04023343 
## ... Procrustes: rmse 0.000170784  max resid 0.0002758927 
## ... Similar to previous best
## Run 108 stress 0.04023336 
## ... Procrustes: rmse 0.0001291414  max resid 0.0002007827 
## ... Similar to previous best
## Run 109 stress 0.04023333 
## ... Procrustes: rmse 6.998919e-05  max resid 0.0001089519 
## ... Similar to previous best
## Run 110 stress 0.04083705 
## Run 111 stress 0.04083702 
## Run 112 stress 0.04023336 
## ... Procrustes: rmse 0.0001196044  max resid 0.0001856543 
## ... Similar to previous best
## Run 113 stress 0.04083702 
## Run 114 stress 0.04023341 
## ... Procrustes: rmse 0.0001472904  max resid 0.0002277339 
## ... Similar to previous best
## Run 115 stress 0.04083707 
## Run 116 stress 0.04083702 
## Run 117 stress 0.04083704 
## Run 118 stress 0.04023342 
## ... Procrustes: rmse 0.0001639423  max resid 0.0002549495 
## ... Similar to previous best
## Run 119 stress 0.04083702 
## Run 120 stress 0.04023332 
## ... Procrustes: rmse 7.176107e-05  max resid 0.0001116065 
## ... Similar to previous best
## Run 121 stress 0.04023336 
## ... Procrustes: rmse 0.0001200307  max resid 0.0001861605 
## ... Similar to previous best
## Run 122 stress 0.04083703 
## Run 123 stress 0.04083705 
## Run 124 stress 0.04023332 
## ... Procrustes: rmse 4.484572e-05  max resid 6.864331e-05 
## ... Similar to previous best
## Run 125 stress 0.04023337 
## ... Procrustes: rmse 0.00013065  max resid 0.0002019696 
## ... Similar to previous best
## Run 126 stress 0.04083702 
## Run 127 stress 0.04023332 
## ... Procrustes: rmse 4.282734e-05  max resid 6.627756e-05 
## ... Similar to previous best
## Run 128 stress 0.04083704 
## Run 129 stress 0.04083702 
## Run 130 stress 0.04083703 
## Run 131 stress 0.04023332 
## ... Procrustes: rmse 6.804774e-05  max resid 0.0001058637 
## ... Similar to previous best
## Run 132 stress 0.04083705 
## Run 133 stress 0.04023342 
## ... Procrustes: rmse 0.0001732101  max resid 0.000269595 
## ... Similar to previous best
## Run 134 stress 0.04023341 
## ... Procrustes: rmse 0.0001674582  max resid 0.0002601492 
## ... Similar to previous best
## Run 135 stress 0.04083706 
## Run 136 stress 0.04083702 
## Run 137 stress 0.04083705 
## Run 138 stress 0.04083702 
## Run 139 stress 0.04083702 
## Run 140 stress 0.04083703 
## Run 141 stress 0.04083702 
## Run 142 stress 0.04083704 
## Run 143 stress 0.04083704 
## Run 144 stress 0.04083702 
## Run 145 stress 0.04023331 
## ... Procrustes: rmse 4.266125e-05  max resid 6.552302e-05 
## ... Similar to previous best
## Run 146 stress 0.04023335 
## ... Procrustes: rmse 0.0001102079  max resid 0.0001709583 
## ... Similar to previous best
## Run 147 stress 0.04083705 
## Run 148 stress 0.04083704 
## Run 149 stress 0.04083706 
## Run 150 stress 0.04083702 
## Run 151 stress 0.04083706 
## Run 152 stress 0.04083706 
## Run 153 stress 0.04083706 
## Run 154 stress 0.04083706 
## Run 155 stress 0.04023337 
## ... Procrustes: rmse 0.0001199015  max resid 0.0001864118 
## ... Similar to previous best
## Run 156 stress 0.04023337 
## ... Procrustes: rmse 0.0001286844  max resid 0.0002001653 
## ... Similar to previous best
## Run 157 stress 0.04083703 
## Run 158 stress 0.04083705 
## Run 159 stress 0.04083703 
## Run 160 stress 0.04023332 
## ... Procrustes: rmse 2.330922e-05  max resid 3.543854e-05 
## ... Similar to previous best
## Run 161 stress 0.04023337 
## ... Procrustes: rmse 0.0001326566  max resid 0.0002058759 
## ... Similar to previous best
## Run 162 stress 0.04023333 
## ... Procrustes: rmse 4.318947e-05  max resid 6.681455e-05 
## ... Similar to previous best
## Run 163 stress 0.04023332 
## ... Procrustes: rmse 5.433464e-05  max resid 8.463533e-05 
## ... Similar to previous best
## Run 164 stress 0.04083705 
## Run 165 stress 0.04083705 
## Run 166 stress 0.04023334 
## ... Procrustes: rmse 9.29117e-05  max resid 0.0001439015 
## ... Similar to previous best
## Run 167 stress 0.0402334 
## ... Procrustes: rmse 0.0001651871  max resid 0.0002563251 
## ... Similar to previous best
## Run 168 stress 0.04083702 
## Run 169 stress 0.04023331 
## ... Procrustes: rmse 2.439936e-06  max resid 4.720837e-06 
## ... Similar to previous best
## Run 170 stress 0.04083704 
## Run 171 stress 0.04023336 
## ... Procrustes: rmse 0.0001058338  max resid 0.0001643732 
## ... Similar to previous best
## Run 172 stress 0.04023331 
## ... Procrustes: rmse 2.139226e-05  max resid 3.363908e-05 
## ... Similar to previous best
## Run 173 stress 0.04083707 
## Run 174 stress 0.04083704 
## Run 175 stress 0.04083702 
## Run 176 stress 0.04083702 
## Run 177 stress 0.04083702 
## Run 178 stress 0.04023341 
## ... Procrustes: rmse 0.000169913  max resid 0.0002624487 
## ... Similar to previous best
## Run 179 stress 0.04083705 
## Run 180 stress 0.04083704 
## Run 181 stress 0.04083702 
## Run 182 stress 0.04023331 
## ... Procrustes: rmse 3.937627e-05  max resid 6.113035e-05 
## ... Similar to previous best
## Run 183 stress 0.04023339 
## ... Procrustes: rmse 0.0001426641  max resid 0.0002212264 
## ... Similar to previous best
## Run 184 stress 0.04023331 
## ... Procrustes: rmse 2.218848e-05  max resid 3.459903e-05 
## ... Similar to previous best
## Run 185 stress 0.04083704 
## Run 186 stress 0.04083702 
## Run 187 stress 0.04083706 
## Run 188 stress 0.04023332 
## ... Procrustes: rmse 6.194197e-05  max resid 9.629883e-05 
## ... Similar to previous best
## Run 189 stress 0.04083707 
## Run 190 stress 0.1085563 
## Run 191 stress 0.04083707 
## Run 192 stress 0.04023336 
## ... Procrustes: rmse 0.0001226198  max resid 0.0001908305 
## ... Similar to previous best
## Run 193 stress 0.04023333 
## ... Procrustes: rmse 7.70568e-05  max resid 0.0001199461 
## ... Similar to previous best
## Run 194 stress 0.04083705 
## Run 195 stress 0.3532054 
## Run 196 stress 0.04023333 
## ... Procrustes: rmse 7.37071e-05  max resid 0.0001143564 
## ... Similar to previous best
## Run 197 stress 0.04023332 
## ... Procrustes: rmse 2.078258e-05  max resid 3.065366e-05 
## ... Similar to previous best
## Run 198 stress 0.04083702 
## Run 199 stress 0.04023331 
## ... Procrustes: rmse 2.547304e-05  max resid 3.95455e-05 
## ... Similar to previous best
## Run 200 stress 0.04023332 
## ... Procrustes: rmse 6.362499e-05  max resid 9.805309e-05 
## ... Similar to previous best
## Run 201 stress 0.04023339 
## ... Procrustes: rmse 0.0001494766  max resid 0.0002325651 
## ... Similar to previous best
## Run 202 stress 0.04083702 
## Run 203 stress 0.04023332 
## ... Procrustes: rmse 6.817339e-05  max resid 0.0001057859 
## ... Similar to previous best
## Run 204 stress 0.04083705 
## Run 205 stress 0.04083705 
## Run 206 stress 0.04083702 
## Run 207 stress 0.04083703 
## Run 208 stress 0.04023343 
## ... Procrustes: rmse 0.0001616156  max resid 0.0002493264 
## ... Similar to previous best
## Run 209 stress 0.04023341 
## ... Procrustes: rmse 0.0001623864  max resid 0.0002524071 
## ... Similar to previous best
## Run 210 stress 0.04083705 
## Run 211 stress 0.04083703 
## Run 212 stress 0.04023331 
## ... Procrustes: rmse 2.84402e-05  max resid 4.321319e-05 
## ... Similar to previous best
## Run 213 stress 0.04023337 
## ... Procrustes: rmse 0.000136663  max resid 0.0002124429 
## ... Similar to previous best
## Run 214 stress 0.1085568 
## Run 215 stress 0.3234447 
## Run 216 stress 0.04083703 
## Run 217 stress 0.04083704 
## Run 218 stress 0.04083703 
## Run 219 stress 0.04023338 
## ... Procrustes: rmse 0.0001461559  max resid 0.0002260927 
## ... Similar to previous best
## Run 220 stress 0.04083704 
## Run 221 stress 0.04023342 
## ... Procrustes: rmse 0.0001801011  max resid 0.0002803276 
## ... Similar to previous best
## Run 222 stress 0.04083702 
## Run 223 stress 0.04023336 
## ... Procrustes: rmse 0.0001251353  max resid 0.0001945151 
## ... Similar to previous best
## Run 224 stress 0.04023343 
## ... Procrustes: rmse 0.0001726992  max resid 0.0002695976 
## ... Similar to previous best
## Run 225 stress 0.04083702 
## Run 226 stress 0.04083704 
## Run 227 stress 0.04083704 
## Run 228 stress 0.04083702 
## Run 229 stress 0.04023334 
## ... Procrustes: rmse 8.313947e-05  max resid 0.000128084 
## ... Similar to previous best
## Run 230 stress 0.04023331 
## ... Procrustes: rmse 2.222886e-05  max resid 3.453311e-05 
## ... Similar to previous best
## Run 231 stress 0.04023335 
## ... Procrustes: rmse 0.0001082187  max resid 0.0001673739 
## ... Similar to previous best
## Run 232 stress 0.04023338 
## ... Procrustes: rmse 0.0001313957  max resid 0.0002044548 
## ... Similar to previous best
## Run 233 stress 0.04083706 
## Run 234 stress 0.04083703 
## Run 235 stress 0.04023333 
## ... Procrustes: rmse 7.05829e-05  max resid 0.0001099758 
## ... Similar to previous best
## Run 236 stress 0.04023331 
## ... Procrustes: rmse 1.262204e-05  max resid 2.056848e-05 
## ... Similar to previous best
## Run 237 stress 0.04023332 
## ... Procrustes: rmse 7.102171e-05  max resid 0.0001104752 
## ... Similar to previous best
## Run 238 stress 0.04023334 
## ... Procrustes: rmse 9.876652e-05  max resid 0.0001537799 
## ... Similar to previous best
## Run 239 stress 0.04023331 
## ... Procrustes: rmse 2.484757e-05  max resid 3.866405e-05 
## ... Similar to previous best
## Run 240 stress 0.04023339 
## ... Procrustes: rmse 0.000155428  max resid 0.0002417268 
## ... Similar to previous best
## Run 241 stress 0.04023333 
## ... Procrustes: rmse 5.925496e-05  max resid 0.0001303297 
## ... Similar to previous best
## Run 242 stress 0.04023344 
## ... Procrustes: rmse 0.0001884028  max resid 0.0002925823 
## ... Similar to previous best
## Run 243 stress 0.04023336 
## ... Procrustes: rmse 0.0001040932  max resid 0.0001616253 
## ... Similar to previous best
## Run 244 stress 0.04023337 
## ... Procrustes: rmse 0.00012557  max resid 0.0001954934 
## ... Similar to previous best
## Run 245 stress 0.04023331 
## ... Procrustes: rmse 7.279474e-06  max resid 1.140584e-05 
## ... Similar to previous best
## Run 246 stress 0.04023331 
## ... Procrustes: rmse 1.697871e-05  max resid 2.569463e-05 
## ... Similar to previous best
## Run 247 stress 0.04083702 
## Run 248 stress 0.04083702 
## Run 249 stress 0.04083702 
## Run 250 stress 0.04023339 
## ... Procrustes: rmse 0.0001551002  max resid 0.0002414364 
## ... Similar to previous best
## Run 251 stress 0.04023341 
## ... Procrustes: rmse 0.0001677033  max resid 0.0002609753 
## ... Similar to previous best
## Run 252 stress 0.04083703 
## Run 253 stress 0.04083702 
## Run 254 stress 0.04023338 
## ... Procrustes: rmse 0.0001414832  max resid 0.0002184909 
## ... Similar to previous best
## Run 255 stress 0.04023338 
## ... Procrustes: rmse 0.0001415974  max resid 0.0002204275 
## ... Similar to previous best
## Run 256 stress 0.04083702 
## Run 257 stress 0.04083705 
## Run 258 stress 0.04023336 
## ... Procrustes: rmse 0.0001061087  max resid 0.0001645289 
## ... Similar to previous best
## Run 259 stress 0.04083705 
## Run 260 stress 0.04083702 
## Run 261 stress 0.04083702 
## Run 262 stress 0.04083706 
## Run 263 stress 0.04023332 
## ... Procrustes: rmse 6.203351e-05  max resid 9.628117e-05 
## ... Similar to previous best
## Run 264 stress 0.04083706 
## Run 265 stress 0.04023331 
## ... Procrustes: rmse 8.182815e-06  max resid 1.289376e-05 
## ... Similar to previous best
## Run 266 stress 0.04023334 
## ... Procrustes: rmse 0.0001038528  max resid 0.0001612466 
## ... Similar to previous best
## Run 267 stress 0.04083703 
## Run 268 stress 0.04083703 
## Run 269 stress 0.04023331 
## ... Procrustes: rmse 1.392491e-05  max resid 2.245703e-05 
## ... Similar to previous best
## Run 270 stress 0.04083707 
## Run 271 stress 0.04023339 
## ... Procrustes: rmse 0.0001407866  max resid 0.0002177785 
## ... Similar to previous best
## Run 272 stress 0.04083705 
## Run 273 stress 0.04023331 
## ... Procrustes: rmse 1.603643e-05  max resid 2.4773e-05 
## ... Similar to previous best
## Run 274 stress 0.04083705 
## Run 275 stress 0.04083702 
## Run 276 stress 0.04083703 
## Run 277 stress 0.3532051 
## Run 278 stress 0.04023336 
## ... Procrustes: rmse 0.0001225705  max resid 0.0001905714 
## ... Similar to previous best
## Run 279 stress 0.04023336 
## ... Procrustes: rmse 0.0001123111  max resid 0.0001746013 
## ... Similar to previous best
## Run 280 stress 0.04023333 
## ... Procrustes: rmse 8.080092e-05  max resid 0.0001257438 
## ... Similar to previous best
## Run 281 stress 0.04083704 
## Run 282 stress 0.04023338 
## ... Procrustes: rmse 0.0001377503  max resid 0.0002137764 
## ... Similar to previous best
## Run 283 stress 0.04083702 
## Run 284 stress 0.04083704 
## Run 285 stress 0.04023332 
## ... Procrustes: rmse 7.292138e-05  max resid 0.0001129827 
## ... Similar to previous best
## Run 286 stress 0.04023333 
## ... Procrustes: rmse 6.232588e-05  max resid 9.704666e-05 
## ... Similar to previous best
## Run 287 stress 0.04023333 
## ... Procrustes: rmse 2.045188e-05  max resid 3.869896e-05 
## ... Similar to previous best
## Run 288 stress 0.04083702 
## Run 289 stress 0.2395761 
## Run 290 stress 0.04023337 
## ... Procrustes: rmse 0.0001348797  max resid 0.0002093881 
## ... Similar to previous best
## Run 291 stress 0.04083702 
## Run 292 stress 0.04023337 
## ... Procrustes: rmse 0.0001310921  max resid 0.0002038542 
## ... Similar to previous best
## Run 293 stress 0.0402334 
## ... Procrustes: rmse 0.0001621221  max resid 0.0002510778 
## ... Similar to previous best
## Run 294 stress 0.04023332 
## ... Procrustes: rmse 4.381793e-05  max resid 6.826926e-05 
## ... Similar to previous best
## Run 295 stress 0.04023335 
## ... Procrustes: rmse 0.0001051166  max resid 0.0001626531 
## ... Similar to previous best
## Run 296 stress 0.04083702 
## Run 297 stress 0.04023336 
## ... Procrustes: rmse 0.0001298014  max resid 0.0002021131 
## ... Similar to previous best
## Run 298 stress 0.04083704 
## Run 299 stress 0.04023334 
## ... Procrustes: rmse 9.417539e-05  max resid 0.0001465213 
## ... Similar to previous best
## Run 300 stress 0.04023333 
## ... Procrustes: rmse 8.611115e-05  max resid 0.000133869 
## ... Similar to previous best
## Run 301 stress 0.04023338 
## ... Procrustes: rmse 0.0001288045  max resid 0.0002001612 
## ... Similar to previous best
## Run 302 stress 0.04023338 
## ... Procrustes: rmse 0.0001401722  max resid 0.0002175563 
## ... Similar to previous best
## Run 303 stress 0.04083703 
## Run 304 stress 0.04083702 
## Run 305 stress 0.04083702 
## Run 306 stress 0.04023333 
## ... Procrustes: rmse 7.693406e-05  max resid 0.0001194282 
## ... Similar to previous best
## Run 307 stress 0.04023335 
## ... Procrustes: rmse 0.0001132266  max resid 0.0001761649 
## ... Similar to previous best
## Run 308 stress 0.04023339 
## ... Procrustes: rmse 0.0001415376  max resid 0.000219997 
## ... Similar to previous best
## Run 309 stress 0.04023333 
## ... Procrustes: rmse 7.913038e-05  max resid 0.000123067 
## ... Similar to previous best
## Run 310 stress 0.04083704 
## Run 311 stress 0.04023331 
## ... Procrustes: rmse 3.853044e-05  max resid 5.968303e-05 
## ... Similar to previous best
## Run 312 stress 0.04083707 
## Run 313 stress 0.04083702 
## Run 314 stress 0.04023338 
## ... Procrustes: rmse 0.0001325291  max resid 0.0002048293 
## ... Similar to previous best
## Run 315 stress 0.04023332 
## ... Procrustes: rmse 5.957202e-05  max resid 9.267048e-05 
## ... Similar to previous best
## Run 316 stress 0.04023334 
## ... Procrustes: rmse 8.550765e-05  max resid 0.0001329308 
## ... Similar to previous best
## Run 317 stress 0.04023335 
## ... Procrustes: rmse 0.0001140725  max resid 0.0001774618 
## ... Similar to previous best
## Run 318 stress 0.04023337 
## ... Procrustes: rmse 0.0001194064  max resid 0.0001849684 
## ... Similar to previous best
## Run 319 stress 0.04083703 
## Run 320 stress 0.04023332 
## ... Procrustes: rmse 5.127836e-05  max resid 7.966385e-05 
## ... Similar to previous best
## Run 321 stress 0.0402334 
## ... Procrustes: rmse 0.0001602556  max resid 0.0002492146 
## ... Similar to previous best
## Run 322 stress 0.04023339 
## ... Procrustes: rmse 0.0001533173  max resid 0.0002385014 
## ... Similar to previous best
## Run 323 stress 0.04023333 
## ... Procrustes: rmse 6.1274e-05  max resid 9.346754e-05 
## ... Similar to previous best
## Run 324 stress 0.04023337 
## ... Procrustes: rmse 0.0001328949  max resid 0.0002067455 
## ... Similar to previous best
## Run 325 stress 0.1085696 
## Run 326 stress 0.04023335 
## ... Procrustes: rmse 0.000114958  max resid 0.0001789316 
## ... Similar to previous best
## Run 327 stress 0.04023337 
## ... Procrustes: rmse 0.0001171266  max resid 0.0001820218 
## ... Similar to previous best
## Run 328 stress 0.04083703 
## Run 329 stress 0.04023337 
## ... Procrustes: rmse 0.0001245379  max resid 0.0001935668 
## ... Similar to previous best
## Run 330 stress 0.04023335 
## ... Procrustes: rmse 0.0001145735  max resid 0.0001781796 
## ... Similar to previous best
## Run 331 stress 0.0402334 
## ... Procrustes: rmse 0.0001495018  max resid 0.0002327248 
## ... Similar to previous best
## Run 332 stress 0.04023332 
## ... Procrustes: rmse 5.883147e-05  max resid 9.142966e-05 
## ... Similar to previous best
## Run 333 stress 0.0402334 
## ... Procrustes: rmse 0.0001374511  max resid 0.0002124063 
## ... Similar to previous best
## Run 334 stress 0.04083703 
## Run 335 stress 0.04083702 
## Run 336 stress 0.04023342 
## ... Procrustes: rmse 0.0001683742  max resid 0.0002607578 
## ... Similar to previous best
## Run 337 stress 0.04083706 
## Run 338 stress 0.04023339 
## ... Procrustes: rmse 0.0001455155  max resid 0.0002263361 
## ... Similar to previous best
## Run 339 stress 0.04083702 
## Run 340 stress 0.04023337 
## ... Procrustes: rmse 0.0001222668  max resid 0.0001890904 
## ... Similar to previous best
## Run 341 stress 0.04023333 
## ... Procrustes: rmse 8.673419e-05  max resid 0.0001348672 
## ... Similar to previous best
## Run 342 stress 0.04083702 
## Run 343 stress 0.04083706 
## Run 344 stress 0.04083704 
## Run 345 stress 0.04023331 
## ... Procrustes: rmse 4.903182e-05  max resid 7.620616e-05 
## ... Similar to previous best
## Run 346 stress 0.04083705 
## Run 347 stress 0.3242664 
## Run 348 stress 0.04083702 
## Run 349 stress 0.04023332 
## ... Procrustes: rmse 4.054665e-05  max resid 6.091641e-05 
## ... Similar to previous best
## Run 350 stress 0.04083703 
## Run 351 stress 0.04023331 
## ... Procrustes: rmse 3.871272e-05  max resid 6.032443e-05 
## ... Similar to previous best
## Run 352 stress 0.04083705 
## Run 353 stress 0.04023332 
## ... Procrustes: rmse 4.464524e-05  max resid 6.900797e-05 
## ... Similar to previous best
## Run 354 stress 0.04083703 
## Run 355 stress 0.04083703 
## Run 356 stress 0.04023341 
## ... Procrustes: rmse 0.0001608366  max resid 0.0002493666 
## ... Similar to previous best
## Run 357 stress 0.04023334 
## ... Procrustes: rmse 9.495615e-05  max resid 0.0001476312 
## ... Similar to previous best
## Run 358 stress 0.04023333 
## ... Procrustes: rmse 7.57675e-05  max resid 0.0001177912 
## ... Similar to previous best
## Run 359 stress 0.04023339 
## ... Procrustes: rmse 0.0001191881  max resid 0.0001823773 
## ... Similar to previous best
## Run 360 stress 0.04083702 
## Run 361 stress 0.04083702 
## Run 362 stress 0.04083704 
## Run 363 stress 0.04023331 
## ... Procrustes: rmse 3.06245e-05  max resid 4.729656e-05 
## ... Similar to previous best
## Run 364 stress 0.04083702 
## Run 365 stress 0.04023336 
## ... Procrustes: rmse 0.0001156289  max resid 0.0001798225 
## ... Similar to previous best
## Run 366 stress 0.04023338 
## ... Procrustes: rmse 0.0001340658  max resid 0.0002081601 
## ... Similar to previous best
## Run 367 stress 0.04083702 
## Run 368 stress 0.04023337 
## ... Procrustes: rmse 0.0001288178  max resid 0.0002004763 
## ... Similar to previous best
## Run 369 stress 0.04083705 
## Run 370 stress 0.04083704 
## Run 371 stress 0.04083705 
## Run 372 stress 0.04023332 
## ... Procrustes: rmse 7.319285e-05  max resid 0.000113452 
## ... Similar to previous best
## Run 373 stress 0.04023341 
## ... Procrustes: rmse 0.0001629886  max resid 0.0002529846 
## ... Similar to previous best
## Run 374 stress 0.04083706 
## Run 375 stress 0.04083704 
## Run 376 stress 0.04083703 
## Run 377 stress 0.04083702 
## Run 378 stress 0.04083703 
## Run 379 stress 0.04023332 
## ... Procrustes: rmse 5.483894e-05  max resid 8.483933e-05 
## ... Similar to previous best
## Run 380 stress 0.04023338 
## ... Procrustes: rmse 0.000126078  max resid 0.0001958915 
## ... Similar to previous best
## Run 381 stress 0.04083702 
## Run 382 stress 0.04023332 
## ... Procrustes: rmse 7.204896e-05  max resid 0.0001120702 
## ... Similar to previous best
## Run 383 stress 0.04083703 
## Run 384 stress 0.04083703 
## Run 385 stress 0.04023333 
## ... Procrustes: rmse 8.898971e-05  max resid 0.0001382602 
## ... Similar to previous best
## Run 386 stress 0.04023335 
## ... Procrustes: rmse 0.0001073553  max resid 0.0001670628 
## ... Similar to previous best
## Run 387 stress 0.04023336 
## ... Procrustes: rmse 0.0001206584  max resid 0.0001874808 
## ... Similar to previous best
## Run 388 stress 0.04023338 
## ... Procrustes: rmse 0.0001480647  max resid 0.0002303736 
## ... Similar to previous best
## Run 389 stress 0.04083703 
## Run 390 stress 0.04083707 
## Run 391 stress 0.04023332 
## ... Procrustes: rmse 7.300349e-05  max resid 0.0001134578 
## ... Similar to previous best
## Run 392 stress 0.04083702 
## Run 393 stress 0.04083703 
## Run 394 stress 0.04083702 
## Run 395 stress 0.1085691 
## Run 396 stress 0.04083702 
## Run 397 stress 0.04083707 
## Run 398 stress 0.04023333 
## ... Procrustes: rmse 8.805353e-05  max resid 0.0001372785 
## ... Similar to previous best
## Run 399 stress 0.04083702 
## Run 400 stress 0.04023331 
## ... Procrustes: rmse 4.259343e-05  max resid 6.604512e-05 
## ... Similar to previous best
## Run 401 stress 0.04083704 
## Run 402 stress 0.04083702 
## Run 403 stress 0.04083707 
## Run 404 stress 0.04023335 
## ... Procrustes: rmse 0.0001038535  max resid 0.0001664276 
## ... Similar to previous best
## Run 405 stress 0.04023331 
## ... Procrustes: rmse 3.430865e-05  max resid 5.347181e-05 
## ... Similar to previous best
## Run 406 stress 0.04083704 
## Run 407 stress 0.04083705 
## Run 408 stress 0.04023338 
## ... Procrustes: rmse 0.0001256412  max resid 0.0001948151 
## ... Similar to previous best
## Run 409 stress 0.04083702 
## Run 410 stress 0.04083702 
## Run 411 stress 0.04083704 
## Run 412 stress 0.04023331 
## ... Procrustes: rmse 4.347081e-05  max resid 6.760697e-05 
## ... Similar to previous best
## Run 413 stress 0.04023332 
## ... Procrustes: rmse 6.370986e-05  max resid 0.0001004342 
## ... Similar to previous best
## Run 414 stress 0.04083702 
## Run 415 stress 0.04083702 
## Run 416 stress 0.04083707 
## Run 417 stress 0.04023331 
## ... Procrustes: rmse 2.881431e-05  max resid 4.409736e-05 
## ... Similar to previous best
## Run 418 stress 0.04023339 
## ... Procrustes: rmse 0.000152919  max resid 0.0002376325 
## ... Similar to previous best
## Run 419 stress 0.04023332 
## ... Procrustes: rmse 5.673653e-05  max resid 8.817527e-05 
## ... Similar to previous best
## Run 420 stress 0.04023331 
## ... Procrustes: rmse 4.172403e-05  max resid 6.479567e-05 
## ... Similar to previous best
## Run 421 stress 0.04083702 
## Run 422 stress 0.04023344 
## ... Procrustes: rmse 0.0001915317  max resid 0.0002978618 
## ... Similar to previous best
## Run 423 stress 0.04023334 
## ... Procrustes: rmse 6.656452e-05  max resid 0.0001011837 
## ... Similar to previous best
## Run 424 stress 0.04083702 
## Run 425 stress 0.04023336 
## ... Procrustes: rmse 0.0001051589  max resid 0.0001776785 
## ... Similar to previous best
## Run 426 stress 0.04023335 
## ... Procrustes: rmse 9.409878e-05  max resid 0.0001445761 
## ... Similar to previous best
## Run 427 stress 0.04023334 
## ... Procrustes: rmse 8.970271e-05  max resid 0.0001396259 
## ... Similar to previous best
## Run 428 stress 0.04083702 
## Run 429 stress 0.04023334 
## ... Procrustes: rmse 0.0001057227  max resid 0.0001644729 
## ... Similar to previous best
## Run 430 stress 0.04083703 
## Run 431 stress 0.04023343 
## ... Procrustes: rmse 0.0001857138  max resid 0.0002887779 
## ... Similar to previous best
## Run 432 stress 0.04023339 
## ... Procrustes: rmse 0.0001406704  max resid 0.0002176047 
## ... Similar to previous best
## Run 433 stress 0.04023339 
## ... Procrustes: rmse 0.0001452067  max resid 0.0002257301 
## ... Similar to previous best
## Run 434 stress 0.04083704 
## Run 435 stress 0.04083707 
## Run 436 stress 0.04083706 
## Run 437 stress 0.04083703 
## Run 438 stress 0.04083703 
## Run 439 stress 0.04083705 
## Run 440 stress 0.04023333 
## ... Procrustes: rmse 8.550161e-05  max resid 0.0001328802 
## ... Similar to previous best
## Run 441 stress 0.1099573 
## Run 442 stress 0.0402334 
## ... Procrustes: rmse 0.0001509204  max resid 0.0002346978 
## ... Similar to previous best
## Run 443 stress 0.04083702 
## Run 444 stress 0.04023333 
## ... Procrustes: rmse 6.997364e-05  max resid 0.0001087639 
## ... Similar to previous best
## Run 445 stress 0.04023342 
## ... Procrustes: rmse 0.0001686916  max resid 0.0002622201 
## ... Similar to previous best
## Run 446 stress 0.04023338 
## ... Procrustes: rmse 0.0001391605  max resid 0.0002164925 
## ... Similar to previous best
## Run 447 stress 0.04083702 
## Run 448 stress 0.04023336 
## ... Procrustes: rmse 0.0001236027  max resid 0.000191775 
## ... Similar to previous best
## Run 449 stress 0.04023338 
## ... Procrustes: rmse 0.0001347141  max resid 0.000209312 
## ... Similar to previous best
## Run 450 stress 0.04023333 
## ... Procrustes: rmse 8.434297e-05  max resid 0.0001310653 
## ... Similar to previous best
## Run 451 stress 0.04083704 
## Run 452 stress 0.04083702 
## Run 453 stress 0.04083704 
## Run 454 stress 0.04023332 
## ... Procrustes: rmse 4.332865e-05  max resid 6.668244e-05 
## ... Similar to previous best
## Run 455 stress 0.04023337 
## ... Procrustes: rmse 0.0001321517  max resid 0.0002056033 
## ... Similar to previous best
## Run 456 stress 0.04023332 
## ... Procrustes: rmse 6.752553e-05  max resid 0.0001068043 
## ... Similar to previous best
## Run 457 stress 0.04023332 
## ... Procrustes: rmse 6.00545e-05  max resid 9.331654e-05 
## ... Similar to previous best
## Run 458 stress 0.04083702 
## Run 459 stress 0.04023338 
## ... Procrustes: rmse 0.00012418  max resid 0.0001917308 
## ... Similar to previous best
## Run 460 stress 0.04023331 
## ... Procrustes: rmse 4.181929e-05  max resid 6.49654e-05 
## ... Similar to previous best
## Run 461 stress 0.3242663 
## Run 462 stress 0.04083705 
## Run 463 stress 0.04023337 
## ... Procrustes: rmse 0.0001311452  max resid 0.0002037301 
## ... Similar to previous best
## Run 464 stress 0.04023331 
## ... Procrustes: rmse 2.166089e-05  max resid 3.369002e-05 
## ... Similar to previous best
## Run 465 stress 0.04023334 
## ... Procrustes: rmse 8.047606e-05  max resid 0.0001244652 
## ... Similar to previous best
## Run 466 stress 0.04023342 
## ... Procrustes: rmse 0.0001668652  max resid 0.0002592409 
## ... Similar to previous best
## Run 467 stress 0.04083704 
## Run 468 stress 0.04083702 
## Run 469 stress 0.04023341 
## ... Procrustes: rmse 0.0001676888  max resid 0.0002606355 
## ... Similar to previous best
## Run 470 stress 0.04083704 
## Run 471 stress 0.04023333 
## ... Procrustes: rmse 8.901223e-05  max resid 0.0001384695 
## ... Similar to previous best
## Run 472 stress 0.04083704 
## Run 473 stress 0.04083704 
## Run 474 stress 0.0402334 
## ... Procrustes: rmse 0.0001658205  max resid 0.0002578237 
## ... Similar to previous best
## Run 475 stress 0.04023331 
## ... Procrustes: rmse 4.237073e-06  max resid 7.072261e-06 
## ... Similar to previous best
## Run 476 stress 0.04023338 
## ... Procrustes: rmse 0.0001416096  max resid 0.0002197535 
## ... Similar to previous best
## Run 477 stress 0.04023334 
## ... Procrustes: rmse 0.0001038344  max resid 0.0001614787 
## ... Similar to previous best
## Run 478 stress 0.04083703 
## Run 479 stress 0.04083702 
## Run 480 stress 0.04083702 
## Run 481 stress 0.04083703 
## Run 482 stress 0.04083706 
## Run 483 stress 0.04083706 
## Run 484 stress 0.04083703 
## Run 485 stress 0.04083702 
## Run 486 stress 0.04083704 
## Run 487 stress 0.04023332 
## ... Procrustes: rmse 5.178665e-05  max resid 8.054253e-05 
## ... Similar to previous best
## Run 488 stress 0.04083702 
## Run 489 stress 0.04083702 
## Run 490 stress 0.04023331 
## ... Procrustes: rmse 4.08372e-05  max resid 6.789285e-05 
## ... Similar to previous best
## Run 491 stress 0.04083703 
## Run 492 stress 0.04023344 
## ... Procrustes: rmse 0.0001929691  max resid 0.0002990658 
## ... Similar to previous best
## Run 493 stress 0.04023331 
## ... Procrustes: rmse 1.753859e-05  max resid 2.716376e-05 
## ... Similar to previous best
## Run 494 stress 0.1090971 
## Run 495 stress 0.04083705 
## Run 496 stress 0.04083703 
## Run 497 stress 0.04083704 
## Run 498 stress 0.04083702 
## Run 499 stress 0.04023337 
## ... Procrustes: rmse 0.0001372083  max resid 0.0002135551 
## ... Similar to previous best
## Run 500 stress 0.04023337 
## ... Procrustes: rmse 0.0001321555  max resid 0.0002043602 
## ... Similar to previous best
## *** Best solution repeated 229 times
# Stratified lakes and ocean sites
fdbso_NMDS <- metaMDS(fdbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.04040732 
## Run 1 stress 0.04755253 
## Run 2 stress 0.05017318 
## Run 3 stress 0.04781521 
## Run 4 stress 0.04870928 
## Run 5 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 1.088983e-05  max resid 2.283008e-05 
## ... Similar to previous best
## Run 6 stress 0.2820455 
## Run 7 stress 0.04040732 
## ... Procrustes: rmse 1.031497e-05  max resid 2.345124e-05 
## ... Similar to previous best
## Run 8 stress 0.04870928 
## Run 9 stress 0.04472625 
## Run 10 stress 0.04040732 
## ... Procrustes: rmse 2.55143e-06  max resid 5.916101e-06 
## ... Similar to previous best
## Run 11 stress 0.04755259 
## Run 12 stress 0.04781521 
## Run 13 stress 0.04040732 
## ... Procrustes: rmse 3.645713e-06  max resid 8.788737e-06 
## ... Similar to previous best
## Run 14 stress 0.0501732 
## Run 15 stress 0.04755261 
## Run 16 stress 0.05353508 
## Run 17 stress 0.04870933 
## Run 18 stress 0.05017316 
## Run 19 stress 0.04755256 
## Run 20 stress 0.04040732 
## ... Procrustes: rmse 2.177841e-05  max resid 3.896809e-05 
## ... Similar to previous best
## Run 21 stress 0.04472623 
## Run 22 stress 0.04781522 
## Run 23 stress 0.04662836 
## Run 24 stress 0.04472623 
## Run 25 stress 0.04040732 
## ... Procrustes: rmse 1.614508e-05  max resid 3.954118e-05 
## ... Similar to previous best
## Run 26 stress 0.05017319 
## Run 27 stress 0.04040732 
## ... Procrustes: rmse 7.894703e-07  max resid 1.75739e-06 
## ... Similar to previous best
## Run 28 stress 0.0487093 
## Run 29 stress 0.04755259 
## Run 30 stress 0.04755254 
## Run 31 stress 0.04040732 
## ... Procrustes: rmse 6.224606e-06  max resid 1.309842e-05 
## ... Similar to previous best
## Run 32 stress 0.04040732 
## ... Procrustes: rmse 1.36627e-05  max resid 2.715521e-05 
## ... Similar to previous best
## Run 33 stress 0.04472624 
## Run 34 stress 0.04755274 
## Run 35 stress 0.2807517 
## Run 36 stress 0.04781521 
## Run 37 stress 0.04040732 
## ... Procrustes: rmse 2.674644e-05  max resid 4.728797e-05 
## ... Similar to previous best
## Run 38 stress 0.04870928 
## Run 39 stress 0.04472623 
## Run 40 stress 0.04663048 
## Run 41 stress 0.04040732 
## ... Procrustes: rmse 3.525046e-06  max resid 8.363687e-06 
## ... Similar to previous best
## Run 42 stress 0.04040732 
## ... Procrustes: rmse 2.443418e-05  max resid 4.478116e-05 
## ... Similar to previous best
## Run 43 stress 0.05017322 
## Run 44 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 1.44984e-05  max resid 2.649278e-05 
## ... Similar to previous best
## Run 45 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 1.087362e-05  max resid 1.862921e-05 
## ... Similar to previous best
## Run 46 stress 0.04040732 
## ... Procrustes: rmse 1.260048e-05  max resid 2.476243e-05 
## ... Similar to previous best
## Run 47 stress 0.04040732 
## ... Procrustes: rmse 9.258741e-06  max resid 2.169109e-05 
## ... Similar to previous best
## Run 48 stress 0.0447148 
## Run 49 stress 0.04663048 
## Run 50 stress 0.04040732 
## ... Procrustes: rmse 2.112754e-06  max resid 4.81237e-06 
## ... Similar to previous best
## Run 51 stress 0.04040732 
## ... Procrustes: rmse 4.042568e-05  max resid 7.574841e-05 
## ... Similar to previous best
## Run 52 stress 0.04472623 
## Run 53 stress 0.04040732 
## ... Procrustes: rmse 2.070755e-05  max resid 4.537996e-05 
## ... Similar to previous best
## Run 54 stress 0.05017325 
## Run 55 stress 0.04662835 
## Run 56 stress 0.04755263 
## Run 57 stress 0.05017323 
## Run 58 stress 0.04662835 
## Run 59 stress 0.04781521 
## Run 60 stress 0.04040732 
## ... Procrustes: rmse 1.240516e-05  max resid 2.244587e-05 
## ... Similar to previous best
## Run 61 stress 0.04755269 
## Run 62 stress 0.0466284 
## Run 63 stress 0.04781521 
## Run 64 stress 0.04870928 
## Run 65 stress 0.05353506 
## Run 66 stress 0.05017315 
## Run 67 stress 0.0475526 
## Run 68 stress 0.04472624 
## Run 69 stress 0.04755255 
## Run 70 stress 0.04870929 
## Run 71 stress 0.04040732 
## ... Procrustes: rmse 1.953339e-06  max resid 3.508332e-06 
## ... Similar to previous best
## Run 72 stress 0.04870929 
## Run 73 stress 0.04662845 
## Run 74 stress 0.04781522 
## Run 75 stress 0.05017318 
## Run 76 stress 0.05017321 
## Run 77 stress 0.04870929 
## Run 78 stress 0.04040732 
## ... Procrustes: rmse 4.344436e-06  max resid 7.750213e-06 
## ... Similar to previous best
## Run 79 stress 0.04040732 
## ... Procrustes: rmse 1.107834e-05  max resid 2.005453e-05 
## ... Similar to previous best
## Run 80 stress 0.04781522 
## Run 81 stress 0.05353508 
## Run 82 stress 0.04040734 
## ... Procrustes: rmse 6.061055e-05  max resid 0.0001081423 
## ... Similar to previous best
## Run 83 stress 0.04471762 
## Run 84 stress 0.04040732 
## ... Procrustes: rmse 2.383716e-05  max resid 4.241997e-05 
## ... Similar to previous best
## Run 85 stress 0.04040732 
## ... Procrustes: rmse 1.23375e-05  max resid 2.236997e-05 
## ... Similar to previous best
## Run 86 stress 0.3578479 
## Run 87 stress 0.04870931 
## Run 88 stress 0.0487093 
## Run 89 stress 0.04040732 
## ... Procrustes: rmse 1.043111e-05  max resid 2.475901e-05 
## ... Similar to previous best
## Run 90 stress 0.04781523 
## Run 91 stress 0.04870937 
## Run 92 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 2.235728e-06  max resid 3.951066e-06 
## ... Similar to previous best
## Run 93 stress 0.04040732 
## ... Procrustes: rmse 5.893247e-06  max resid 1.146903e-05 
## ... Similar to previous best
## Run 94 stress 0.04870928 
## Run 95 stress 0.04040732 
## ... Procrustes: rmse 2.376478e-05  max resid 4.226525e-05 
## ... Similar to previous best
## Run 96 stress 0.05017317 
## Run 97 stress 0.04870931 
## Run 98 stress 0.04870928 
## Run 99 stress 0.04870932 
## Run 100 stress 0.05017316 
## Run 101 stress 0.04870931 
## Run 102 stress 0.04870928 
## Run 103 stress 0.04755258 
## Run 104 stress 0.04040732 
## ... Procrustes: rmse 7.827449e-06  max resid 1.418492e-05 
## ... Similar to previous best
## Run 105 stress 0.04662835 
## Run 106 stress 0.0501732 
## Run 107 stress 0.04755271 
## Run 108 stress 0.04472625 
## Run 109 stress 0.04472623 
## Run 110 stress 0.04870928 
## Run 111 stress 0.04662836 
## Run 112 stress 0.04471762 
## Run 113 stress 0.04040732 
## ... Procrustes: rmse 3.557153e-05  max resid 6.332051e-05 
## ... Similar to previous best
## Run 114 stress 0.04472623 
## Run 115 stress 0.05017317 
## Run 116 stress 0.04040732 
## ... Procrustes: rmse 1.052513e-05  max resid 1.873799e-05 
## ... Similar to previous best
## Run 117 stress 0.04040732 
## ... Procrustes: rmse 9.31983e-06  max resid 1.923789e-05 
## ... Similar to previous best
## Run 118 stress 0.04040732 
## ... Procrustes: rmse 5.817326e-06  max resid 9.953807e-06 
## ... Similar to previous best
## Run 119 stress 0.04040732 
## ... Procrustes: rmse 1.248856e-06  max resid 2.23962e-06 
## ... Similar to previous best
## Run 120 stress 0.04870928 
## Run 121 stress 0.0501732 
## Run 122 stress 0.04040732 
## ... Procrustes: rmse 1.590823e-05  max resid 3.125455e-05 
## ... Similar to previous best
## Run 123 stress 0.04663049 
## Run 124 stress 0.04755265 
## Run 125 stress 0.04040732 
## ... Procrustes: rmse 1.836968e-05  max resid 3.262925e-05 
## ... Similar to previous best
## Run 126 stress 0.04870928 
## Run 127 stress 0.04040732 
## ... Procrustes: rmse 6.792302e-06  max resid 1.221418e-05 
## ... Similar to previous best
## Run 128 stress 0.04040732 
## ... Procrustes: rmse 5.973602e-06  max resid 1.135787e-05 
## ... Similar to previous best
## Run 129 stress 0.04781524 
## Run 130 stress 0.04870935 
## Run 131 stress 0.04781521 
## Run 132 stress 0.04870933 
## Run 133 stress 0.04755254 
## Run 134 stress 0.04472624 
## Run 135 stress 0.05017317 
## Run 136 stress 0.04870932 
## Run 137 stress 0.04755272 
## Run 138 stress 0.04040732 
## ... Procrustes: rmse 1.306878e-05  max resid 2.337548e-05 
## ... Similar to previous best
## Run 139 stress 0.05017315 
## Run 140 stress 0.04870928 
## Run 141 stress 0.05017316 
## Run 142 stress 0.04040732 
## ... Procrustes: rmse 9.056244e-06  max resid 1.593364e-05 
## ... Similar to previous best
## Run 143 stress 0.04040732 
## ... Procrustes: rmse 8.426099e-06  max resid 2.432372e-05 
## ... Similar to previous best
## Run 144 stress 0.04040732 
## ... Procrustes: rmse 8.173936e-06  max resid 1.528983e-05 
## ... Similar to previous best
## Run 145 stress 0.04040732 
## ... Procrustes: rmse 1.592232e-05  max resid 3.876116e-05 
## ... Similar to previous best
## Run 146 stress 0.04781522 
## Run 147 stress 0.04471481 
## Run 148 stress 0.04040732 
## ... Procrustes: rmse 4.642217e-06  max resid 9.02731e-06 
## ... Similar to previous best
## Run 149 stress 0.04472624 
## Run 150 stress 0.04781522 
## Run 151 stress 0.04040732 
## ... Procrustes: rmse 1.525454e-05  max resid 2.908793e-05 
## ... Similar to previous best
## Run 152 stress 0.05017324 
## Run 153 stress 0.04781521 
## Run 154 stress 0.04040732 
## ... Procrustes: rmse 3.376733e-06  max resid 8.22493e-06 
## ... Similar to previous best
## Run 155 stress 0.04040733 
## ... Procrustes: rmse 3.988488e-05  max resid 7.101463e-05 
## ... Similar to previous best
## Run 156 stress 0.04755256 
## Run 157 stress 0.04040732 
## ... Procrustes: rmse 8.065554e-06  max resid 1.47936e-05 
## ... Similar to previous best
## Run 158 stress 0.05353511 
## Run 159 stress 0.04781521 
## Run 160 stress 0.04781521 
## Run 161 stress 0.04662845 
## Run 162 stress 0.282148 
## Run 163 stress 0.04870928 
## Run 164 stress 0.04040732 
## ... Procrustes: rmse 5.103203e-06  max resid 1.299281e-05 
## ... Similar to previous best
## Run 165 stress 0.04040732 
## ... Procrustes: rmse 8.81321e-06  max resid 1.607024e-05 
## ... Similar to previous best
## Run 166 stress 0.04662838 
## Run 167 stress 0.04040732 
## ... Procrustes: rmse 7.59075e-06  max resid 1.684016e-05 
## ... Similar to previous best
## Run 168 stress 0.04755264 
## Run 169 stress 0.04040732 
## ... Procrustes: rmse 1.202679e-05  max resid 2.343663e-05 
## ... Similar to previous best
## Run 170 stress 0.04040732 
## ... Procrustes: rmse 2.244235e-06  max resid 3.780833e-06 
## ... Similar to previous best
## Run 171 stress 0.04040732 
## ... Procrustes: rmse 6.582934e-06  max resid 1.127496e-05 
## ... Similar to previous best
## Run 172 stress 0.04781521 
## Run 173 stress 0.04870928 
## Run 174 stress 0.04040732 
## ... Procrustes: rmse 3.257417e-06  max resid 7.780744e-06 
## ... Similar to previous best
## Run 175 stress 0.04781522 
## Run 176 stress 0.04870934 
## Run 177 stress 0.05017318 
## Run 178 stress 0.04755261 
## Run 179 stress 0.0487093 
## Run 180 stress 0.04870933 
## Run 181 stress 0.04781522 
## Run 182 stress 0.04781522 
## Run 183 stress 0.04040732 
## ... Procrustes: rmse 4.602023e-06  max resid 7.86391e-06 
## ... Similar to previous best
## Run 184 stress 0.04040732 
## ... Procrustes: rmse 4.063381e-06  max resid 9.772062e-06 
## ... Similar to previous best
## Run 185 stress 0.2722709 
## Run 186 stress 0.04471481 
## Run 187 stress 0.04040732 
## ... Procrustes: rmse 2.373502e-06  max resid 4.18708e-06 
## ... Similar to previous best
## Run 188 stress 0.04040732 
## ... Procrustes: rmse 9.046214e-06  max resid 1.629947e-05 
## ... Similar to previous best
## Run 189 stress 0.0466305 
## Run 190 stress 0.0487093 
## Run 191 stress 0.04755263 
## Run 192 stress 0.04870928 
## Run 193 stress 0.04781521 
## Run 194 stress 0.05017315 
## Run 195 stress 0.04040732 
## ... Procrustes: rmse 9.526889e-06  max resid 2.19479e-05 
## ... Similar to previous best
## Run 196 stress 0.04663048 
## Run 197 stress 0.04662836 
## Run 198 stress 0.04040732 
## ... Procrustes: rmse 1.344131e-05  max resid 2.632365e-05 
## ... Similar to previous best
## Run 199 stress 0.05017317 
## Run 200 stress 0.04870928 
## Run 201 stress 0.04662837 
## Run 202 stress 0.04755253 
## Run 203 stress 0.05017319 
## Run 204 stress 0.04870933 
## Run 205 stress 0.04663055 
## Run 206 stress 0.04870931 
## Run 207 stress 0.04662842 
## Run 208 stress 0.04040732 
## ... Procrustes: rmse 8.945751e-07  max resid 1.594931e-06 
## ... Similar to previous best
## Run 209 stress 0.0487093 
## Run 210 stress 0.3222046 
## Run 211 stress 0.04870932 
## Run 212 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 1.269407e-06  max resid 2.312762e-06 
## ... Similar to previous best
## Run 213 stress 0.04040732 
## ... Procrustes: rmse 7.368491e-07  max resid 1.928076e-06 
## ... Similar to previous best
## Run 214 stress 0.04871641 
## Run 215 stress 0.04472625 
## Run 216 stress 0.04040732 
## ... Procrustes: rmse 4.515405e-06  max resid 7.373182e-06 
## ... Similar to previous best
## Run 217 stress 0.04472623 
## Run 218 stress 0.04755259 
## Run 219 stress 0.0475526 
## Run 220 stress 0.04781521 
## Run 221 stress 0.04040732 
## ... Procrustes: rmse 7.046906e-06  max resid 1.301393e-05 
## ... Similar to previous best
## Run 222 stress 0.04040732 
## ... Procrustes: rmse 3.441567e-06  max resid 6.976505e-06 
## ... Similar to previous best
## Run 223 stress 0.04040732 
## ... Procrustes: rmse 1.776425e-05  max resid 3.17886e-05 
## ... Similar to previous best
## Run 224 stress 0.0447148 
## Run 225 stress 0.05017323 
## Run 226 stress 0.04781521 
## Run 227 stress 0.04472626 
## Run 228 stress 0.04870929 
## Run 229 stress 0.04870929 
## Run 230 stress 0.04781521 
## Run 231 stress 0.04755264 
## Run 232 stress 0.04040732 
## ... Procrustes: rmse 6.398942e-06  max resid 1.292648e-05 
## ... Similar to previous best
## Run 233 stress 0.04781521 
## Run 234 stress 0.05353519 
## Run 235 stress 0.04040732 
## ... Procrustes: rmse 2.569437e-05  max resid 4.599659e-05 
## ... Similar to previous best
## Run 236 stress 0.04040732 
## ... Procrustes: rmse 5.778454e-06  max resid 1.079432e-05 
## ... Similar to previous best
## Run 237 stress 0.04472623 
## Run 238 stress 0.04781521 
## Run 239 stress 0.04781521 
## Run 240 stress 0.04471762 
## Run 241 stress 0.04040732 
## ... Procrustes: rmse 5.727317e-06  max resid 1.161276e-05 
## ... Similar to previous best
## Run 242 stress 0.04040732 
## ... Procrustes: rmse 1.023957e-05  max resid 1.866841e-05 
## ... Similar to previous best
## Run 243 stress 0.05353505 
## Run 244 stress 0.04781521 
## Run 245 stress 0.05017316 
## Run 246 stress 0.04781521 
## Run 247 stress 0.04662835 
## Run 248 stress 0.04040734 
## ... Procrustes: rmse 4.776227e-05  max resid 8.860693e-05 
## ... Similar to previous best
## Run 249 stress 0.04781522 
## Run 250 stress 0.04781522 
## Run 251 stress 0.04472625 
## Run 252 stress 0.04870928 
## Run 253 stress 0.04781522 
## Run 254 stress 0.04870931 
## Run 255 stress 0.04870929 
## Run 256 stress 0.04781521 
## Run 257 stress 0.04781522 
## Run 258 stress 0.04781521 
## Run 259 stress 0.04755266 
## Run 260 stress 0.04472624 
## Run 261 stress 0.04040732 
## ... Procrustes: rmse 9.040129e-06  max resid 1.411002e-05 
## ... Similar to previous best
## Run 262 stress 0.04755261 
## Run 263 stress 0.04040732 
## ... New best solution
## ... Procrustes: rmse 7.671256e-07  max resid 1.465394e-06 
## ... Similar to previous best
## Run 264 stress 0.04472625 
## Run 265 stress 0.04870931 
## Run 266 stress 0.04040732 
## ... Procrustes: rmse 2.613782e-05  max resid 4.739461e-05 
## ... Similar to previous best
## Run 267 stress 0.04472623 
## Run 268 stress 0.04755257 
## Run 269 stress 0.04472623 
## Run 270 stress 0.04755267 
## Run 271 stress 0.04781522 
## Run 272 stress 0.04040732 
## ... Procrustes: rmse 7.25074e-06  max resid 1.382919e-05 
## ... Similar to previous best
## Run 273 stress 0.04040732 
## ... Procrustes: rmse 1.06318e-05  max resid 2.074943e-05 
## ... Similar to previous best
## Run 274 stress 0.04662836 
## Run 275 stress 0.04781521 
## Run 276 stress 0.05017319 
## Run 277 stress 0.04781521 
## Run 278 stress 0.04040732 
## ... Procrustes: rmse 3.786003e-06  max resid 9.512903e-06 
## ... Similar to previous best
## Run 279 stress 0.05017319 
## Run 280 stress 0.04040732 
## ... Procrustes: rmse 2.441144e-06  max resid 4.680839e-06 
## ... Similar to previous best
## Run 281 stress 0.04781521 
## Run 282 stress 0.04662835 
## Run 283 stress 0.0487093 
## Run 284 stress 0.05017316 
## Run 285 stress 0.04781521 
## Run 286 stress 0.05017316 
## Run 287 stress 0.04040732 
## ... Procrustes: rmse 1.015188e-05  max resid 1.892784e-05 
## ... Similar to previous best
## Run 288 stress 0.04040732 
## ... Procrustes: rmse 1.707277e-06  max resid 3.28986e-06 
## ... Similar to previous best
## Run 289 stress 0.04781521 
## Run 290 stress 0.04755255 
## Run 291 stress 0.04662836 
## Run 292 stress 0.04870929 
## Run 293 stress 0.04870928 
## Run 294 stress 0.05017318 
## Run 295 stress 0.04472623 
## Run 296 stress 0.04040732 
## ... Procrustes: rmse 8.75933e-06  max resid 1.759246e-05 
## ... Similar to previous best
## Run 297 stress 0.04870928 
## Run 298 stress 0.04870928 
## Run 299 stress 0.04871639 
## Run 300 stress 0.04040732 
## ... Procrustes: rmse 3.240172e-05  max resid 5.790631e-05 
## ... Similar to previous best
## Run 301 stress 0.04755261 
## Run 302 stress 0.04040732 
## ... Procrustes: rmse 4.510316e-06  max resid 8.234332e-06 
## ... Similar to previous best
## Run 303 stress 0.04040732 
## ... Procrustes: rmse 2.129253e-05  max resid 4.0849e-05 
## ... Similar to previous best
## Run 304 stress 0.0475526 
## Run 305 stress 0.04755264 
## Run 306 stress 0.04662835 
## Run 307 stress 0.04040732 
## ... Procrustes: rmse 6.137192e-06  max resid 1.187941e-05 
## ... Similar to previous best
## Run 308 stress 0.04040732 
## ... Procrustes: rmse 8.919267e-06  max resid 1.590136e-05 
## ... Similar to previous best
## Run 309 stress 0.04040732 
## ... Procrustes: rmse 9.105311e-07  max resid 1.48756e-06 
## ... Similar to previous best
## Run 310 stress 0.04040734 
## ... Procrustes: rmse 6.04812e-05  max resid 0.0001096157 
## ... Similar to previous best
## Run 311 stress 0.04040732 
## ... Procrustes: rmse 2.401576e-05  max resid 4.369426e-05 
## ... Similar to previous best
## Run 312 stress 0.04040732 
## ... Procrustes: rmse 1.269569e-06  max resid 2.844245e-06 
## ... Similar to previous best
## Run 313 stress 0.04472624 
## Run 314 stress 0.04781521 
## Run 315 stress 0.04662838 
## Run 316 stress 0.05017316 
## Run 317 stress 0.04662839 
## Run 318 stress 0.04870932 
## Run 319 stress 0.04040732 
## ... Procrustes: rmse 2.326737e-05  max resid 4.256643e-05 
## ... Similar to previous best
## Run 320 stress 0.04040732 
## ... Procrustes: rmse 4.070209e-06  max resid 7.523466e-06 
## ... Similar to previous best
## Run 321 stress 0.3578483 
## Run 322 stress 0.04040732 
## ... Procrustes: rmse 6.904903e-06  max resid 1.35781e-05 
## ... Similar to previous best
## Run 323 stress 0.0487093 
## Run 324 stress 0.04040732 
## ... Procrustes: rmse 8.441953e-06  max resid 1.545418e-05 
## ... Similar to previous best
## Run 325 stress 0.05353513 
## Run 326 stress 0.04472623 
## Run 327 stress 0.04870929 
## Run 328 stress 0.04040732 
## ... Procrustes: rmse 1.069204e-05  max resid 1.899232e-05 
## ... Similar to previous best
## Run 329 stress 0.04755266 
## Run 330 stress 0.04781521 
## Run 331 stress 0.04663052 
## Run 332 stress 0.05353516 
## Run 333 stress 0.04755256 
## Run 334 stress 0.04040732 
## ... Procrustes: rmse 1.836468e-05  max resid 3.347878e-05 
## ... Similar to previous best
## Run 335 stress 0.0447148 
## Run 336 stress 0.04755273 
## Run 337 stress 0.04870929 
## Run 338 stress 0.04040735 
## ... Procrustes: rmse 1.746365e-05  max resid 4.752926e-05 
## ... Similar to previous best
## Run 339 stress 0.04040732 
## ... Procrustes: rmse 8.943639e-06  max resid 1.873625e-05 
## ... Similar to previous best
## Run 340 stress 0.04755256 
## Run 341 stress 0.04662836 
## Run 342 stress 0.04040732 
## ... Procrustes: rmse 2.428207e-06  max resid 4.428864e-06 
## ... Similar to previous best
## Run 343 stress 0.04040732 
## ... Procrustes: rmse 5.73566e-06  max resid 1.569956e-05 
## ... Similar to previous best
## Run 344 stress 0.0466284 
## Run 345 stress 0.04040732 
## ... Procrustes: rmse 1.781502e-05  max resid 3.164665e-05 
## ... Similar to previous best
## Run 346 stress 0.0447148 
## Run 347 stress 0.04755265 
## Run 348 stress 0.05353512 
## Run 349 stress 0.04755265 
## Run 350 stress 0.04663048 
## Run 351 stress 0.04781521 
## Run 352 stress 0.04781521 
## Run 353 stress 0.04755269 
## Run 354 stress 0.04040732 
## ... Procrustes: rmse 8.399409e-06  max resid 1.597786e-05 
## ... Similar to previous best
## Run 355 stress 0.2824287 
## Run 356 stress 0.04040732 
## ... Procrustes: rmse 6.715621e-06  max resid 1.248778e-05 
## ... Similar to previous best
## Run 357 stress 0.04870928 
## Run 358 stress 0.04040732 
## ... Procrustes: rmse 1.261239e-05  max resid 2.566231e-05 
## ... Similar to previous best
## Run 359 stress 0.04781521 
## Run 360 stress 0.04870928 
## Run 361 stress 0.04040732 
## ... Procrustes: rmse 7.822977e-06  max resid 1.550549e-05 
## ... Similar to previous best
## Run 362 stress 0.05017317 
## Run 363 stress 0.05017315 
## Run 364 stress 0.04472623 
## Run 365 stress 0.04040732 
## ... Procrustes: rmse 3.516769e-06  max resid 6.230463e-06 
## ... Similar to previous best
## Run 366 stress 0.04040732 
## ... Procrustes: rmse 1.052036e-05  max resid 1.87522e-05 
## ... Similar to previous best
## Run 367 stress 0.04755263 
## Run 368 stress 0.05017315 
## Run 369 stress 0.04755258 
## Run 370 stress 0.04870928 
## Run 371 stress 0.04781521 
## Run 372 stress 0.04781521 
## Run 373 stress 0.3091224 
## Run 374 stress 0.3578481 
## Run 375 stress 0.04755265 
## Run 376 stress 0.04040732 
## ... Procrustes: rmse 3.019106e-05  max resid 5.365961e-05 
## ... Similar to previous best
## Run 377 stress 0.04781521 
## Run 378 stress 0.04040732 
## ... Procrustes: rmse 4.8832e-06  max resid 1.116504e-05 
## ... Similar to previous best
## Run 379 stress 0.04472624 
## Run 380 stress 0.04870931 
## Run 381 stress 0.04040732 
## ... Procrustes: rmse 3.91205e-06  max resid 9.724976e-06 
## ... Similar to previous best
## Run 382 stress 0.3146611 
## Run 383 stress 0.05017316 
## Run 384 stress 0.05017315 
## Run 385 stress 0.04781521 
## Run 386 stress 0.04870929 
## Run 387 stress 0.04755264 
## Run 388 stress 0.04870928 
## Run 389 stress 0.04040732 
## ... Procrustes: rmse 1.083275e-05  max resid 1.918874e-05 
## ... Similar to previous best
## Run 390 stress 0.04040732 
## ... Procrustes: rmse 5.038216e-06  max resid 9.988332e-06 
## ... Similar to previous best
## Run 391 stress 0.04781522 
## Run 392 stress 0.04040732 
## ... Procrustes: rmse 4.154329e-06  max resid 8.650324e-06 
## ... Similar to previous best
## Run 393 stress 0.04040732 
## ... Procrustes: rmse 3.743669e-06  max resid 6.883565e-06 
## ... Similar to previous best
## Run 394 stress 0.04472623 
## Run 395 stress 0.05017316 
## Run 396 stress 0.04781521 
## Run 397 stress 0.05017317 
## Run 398 stress 0.04472623 
## Run 399 stress 0.04040732 
## ... Procrustes: rmse 1.009554e-05  max resid 1.950086e-05 
## ... Similar to previous best
## Run 400 stress 0.04870932 
## Run 401 stress 0.04040732 
## ... Procrustes: rmse 8.70774e-06  max resid 1.548531e-05 
## ... Similar to previous best
## Run 402 stress 0.05017316 
## Run 403 stress 0.04781523 
## Run 404 stress 0.04781521 
## Run 405 stress 0.05017318 
## Run 406 stress 0.04662842 
## Run 407 stress 0.04755267 
## Run 408 stress 0.04040732 
## ... Procrustes: rmse 1.639239e-06  max resid 2.887799e-06 
## ... Similar to previous best
## Run 409 stress 0.05353506 
## Run 410 stress 0.04040732 
## ... Procrustes: rmse 2.398058e-05  max resid 4.236059e-05 
## ... Similar to previous best
## Run 411 stress 0.0487093 
## Run 412 stress 0.3261717 
## Run 413 stress 0.04040733 
## ... Procrustes: rmse 4.6608e-05  max resid 8.353995e-05 
## ... Similar to previous best
## Run 414 stress 0.05017318 
## Run 415 stress 0.0475526 
## Run 416 stress 0.04755266 
## Run 417 stress 0.04040732 
## ... Procrustes: rmse 3.586082e-05  max resid 6.381139e-05 
## ... Similar to previous best
## Run 418 stress 0.04870931 
## Run 419 stress 0.0487094 
## Run 420 stress 0.04472625 
## Run 421 stress 0.0501732 
## Run 422 stress 0.04870929 
## Run 423 stress 0.0501732 
## Run 424 stress 0.04040732 
## ... Procrustes: rmse 1.075496e-05  max resid 2.644393e-05 
## ... Similar to previous best
## Run 425 stress 0.04755262 
## Run 426 stress 0.04755264 
## Run 427 stress 0.0501732 
## Run 428 stress 0.04870929 
## Run 429 stress 0.05017316 
## Run 430 stress 0.0447148 
## Run 431 stress 0.04755261 
## Run 432 stress 0.04040734 
## ... Procrustes: rmse 6.07145e-05  max resid 0.0001089693 
## ... Similar to previous best
## Run 433 stress 0.04040732 
## ... Procrustes: rmse 1.735403e-05  max resid 3.096028e-05 
## ... Similar to previous best
## Run 434 stress 0.04472623 
## Run 435 stress 0.05017319 
## Run 436 stress 0.04781521 
## Run 437 stress 0.05353506 
## Run 438 stress 0.04755267 
## Run 439 stress 0.04471762 
## Run 440 stress 0.05017316 
## Run 441 stress 0.04755254 
## Run 442 stress 0.0487164 
## Run 443 stress 0.04472625 
## Run 444 stress 0.05017316 
## Run 445 stress 0.04040732 
## ... Procrustes: rmse 1.634014e-05  max resid 4.109631e-05 
## ... Similar to previous best
## Run 446 stress 0.04781521 
## Run 447 stress 0.0475526 
## Run 448 stress 0.04040732 
## ... Procrustes: rmse 2.991461e-06  max resid 5.73969e-06 
## ... Similar to previous best
## Run 449 stress 0.04662835 
## Run 450 stress 0.04040733 
## ... Procrustes: rmse 3.850214e-05  max resid 6.942879e-05 
## ... Similar to previous best
## Run 451 stress 0.2680344 
## Run 452 stress 0.05017318 
## Run 453 stress 0.04471762 
## Run 454 stress 0.04472623 
## Run 455 stress 0.04040732 
## ... Procrustes: rmse 2.037657e-05  max resid 3.621765e-05 
## ... Similar to previous best
## Run 456 stress 0.04870929 
## Run 457 stress 0.04040733 
## ... Procrustes: rmse 5.070654e-05  max resid 9.048026e-05 
## ... Similar to previous best
## Run 458 stress 0.04755262 
## Run 459 stress 0.04040732 
## ... Procrustes: rmse 8.373064e-06  max resid 1.503186e-05 
## ... Similar to previous best
## Run 460 stress 0.04040732 
## ... Procrustes: rmse 5.100947e-06  max resid 9.842386e-06 
## ... Similar to previous best
## Run 461 stress 0.04472623 
## Run 462 stress 0.05017318 
## Run 463 stress 0.04040732 
## ... Procrustes: rmse 4.379748e-06  max resid 9.089147e-06 
## ... Similar to previous best
## Run 464 stress 0.04662841 
## Run 465 stress 0.05017315 
## Run 466 stress 0.04662835 
## Run 467 stress 0.0487093 
## Run 468 stress 0.04663049 
## Run 469 stress 0.04040732 
## ... Procrustes: rmse 7.704242e-06  max resid 1.463774e-05 
## ... Similar to previous best
## Run 470 stress 0.04870935 
## Run 471 stress 0.04662837 
## Run 472 stress 0.05017316 
## Run 473 stress 0.0447148 
## Run 474 stress 0.04040732 
## ... Procrustes: rmse 5.525339e-06  max resid 1.32338e-05 
## ... Similar to previous best
## Run 475 stress 0.04472626 
## Run 476 stress 0.04781523 
## Run 477 stress 0.04040733 
## ... Procrustes: rmse 4.324387e-05  max resid 7.846827e-05 
## ... Similar to previous best
## Run 478 stress 0.04040734 
## ... Procrustes: rmse 6.190823e-05  max resid 0.0001121232 
## ... Similar to previous best
## Run 479 stress 0.04040732 
## ... Procrustes: rmse 4.839375e-06  max resid 1.266306e-05 
## ... Similar to previous best
## Run 480 stress 0.0487093 
## Run 481 stress 0.04472623 
## Run 482 stress 0.04040732 
## ... Procrustes: rmse 2.991275e-05  max resid 5.44521e-05 
## ... Similar to previous best
## Run 483 stress 0.04040732 
## ... Procrustes: rmse 1.184292e-05  max resid 2.551262e-05 
## ... Similar to previous best
## Run 484 stress 0.04781521 
## Run 485 stress 0.04662838 
## Run 486 stress 0.04040732 
## ... Procrustes: rmse 8.208435e-06  max resid 1.665759e-05 
## ... Similar to previous best
## Run 487 stress 0.04781521 
## Run 488 stress 0.04040732 
## ... Procrustes: rmse 6.555953e-06  max resid 1.360338e-05 
## ... Similar to previous best
## Run 489 stress 0.04870928 
## Run 490 stress 0.04781521 
## Run 491 stress 0.04040732 
## ... Procrustes: rmse 4.503156e-06  max resid 8.289343e-06 
## ... Similar to previous best
## Run 492 stress 0.04781521 
## Run 493 stress 0.04755254 
## Run 494 stress 0.04870928 
## Run 495 stress 0.04755261 
## Run 496 stress 0.04472623 
## Run 497 stress 0.04040732 
## ... Procrustes: rmse 6.598553e-06  max resid 1.233376e-05 
## ... Similar to previous best
## Run 498 stress 0.04781521 
## Run 499 stress 0.05017326 
## Run 500 stress 0.04870928 
## *** Best solution repeated 70 times

Determine stratification homogeneity using traits

We use betadisper to determine homogeneity of the trait data based on the stratification category. Is the dispersion of traits similar between the different stratifications.

### Stratification
stratification_fd_bd <- betadisper(fd_dist, stratification_group)
## Warning in betadisper(fd_dist, stratification_group): some squared distances
## are negative and changed to zero
anova(stratification_fd_bd)
## Analysis of Variance Table
## 
## Response: Distances
##           Df  Sum Sq  Mean Sq F value    Pr(>F)    
## Groups     2 0.39642 0.198210   30.89 1.069e-06 ***
## Residuals 19 0.12192 0.006417                      
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
permutest(stratification_fd_bd, pairwise = TRUE)
## 
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
## 
## Response: Distances
##           Df  Sum Sq  Mean Sq     F N.Perm Pr(>F)    
## Groups     2 0.39642 0.198210 30.89    999  0.001 ***
## Residuals 19 0.12192 0.006417                        
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
##                 Mixed      Ocean Stratified
## Mixed                 3.8000e-02      0.001
## Ocean      4.0346e-02                 0.003
## Stratified 6.7195e-06 6.5666e-04
(stratification_fd_bd.HSD <- TukeyHSD(stratification_fd_bd))
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                        diff         lwr       upr     p adj
## Ocean-Mixed      0.05204806 -0.05785458 0.1619507 0.4657824
## Stratified-Mixed 0.29806649  0.19631641 0.3998166 0.0000014
## Stratified-Ocean 0.24601843  0.13611579 0.3559211 0.0000501
boxplot(stratification_fd_bd)

Determine stratification dissimilarity using traits

We use adonis to determine if dissimilarities of species traits by stratification categories are significant and how much of the variation is explained by trait dissimilarities.

### Stratification
# All sites 
fd_pms <- adonis2(fd_dist ~ env[-20,19], permutations = 999)
fd_pms
## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
## 
## adonis2(formula = fd_dist ~ env[-20, 19], permutations = 999)
##              Df SumOfSqs      R2     F Pr(>F)    
## env[-20, 19]  2   1.2750 0.55876 12.03  0.001 ***
## Residual     19   1.0068 0.44124                 
## Total        21   2.2818 1.00000                 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
# By stratifcation
fd_pms_pair <- pairwise.adonis(fd_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
fd_pms_pair
##                 pairs Df  SumsOfSqs   F.Model        R2 p.value p.adjusted sig
## 1 Stratified vs Mixed  1 0.91580033 13.423218 0.4894837   0.001      0.003   *
## 2 Stratified vs Ocean  1 0.93071542 11.199063 0.4827377   0.003      0.009   *
## 3      Mixed vs Ocean  1 0.02619034  5.132228 0.2995657   0.008      0.024   .

Envfit environmental influence on traits

We use envfit to determine significantly correlated environmental variables to our trait NMDS. We will use these results, if significant, in our figure.

### Environmental
# All sites for figure
fde_ef <- envfit(fde_NMDS, env[-c(9,16,18,20),c(34)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
fde_ef
## 
## ***VECTORS
## 
##          NMDS1     NMDS2    r2  Pr(>r)  
## [1,]  0.998300 -0.058307 0.838 0.01898 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fde_efp <- p.adjust.envfit(fde_ef)
## Adjustment of significance by bonferroni method
fde_efp
## 
## ***VECTORS
## 
##          NMDS1     NMDS2    r2  Pr(>r)  
## [1,]  0.998300 -0.058307 0.838 0.01898 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
fdea_ef <- envfit(fde_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
fdea_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median -0.36835 -0.92969 0.0324 0.87512  
## salinity_median     0.99830 -0.05831 0.8380 0.02997 *
## oxygen_median       0.85529 -0.51815 0.1609 0.97902  
## pH_median           0.63014 -0.77648 0.6622 0.02198 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdea_efp <- p.adjust.envfit(fdea_ef)
## Adjustment of significance by bonferroni method
fdea_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median -0.36835 -0.92969 0.0324 1.00000  
## salinity_median     0.99830 -0.05831 0.8380 0.11988  
## oxygen_median       0.85529 -0.51815 0.1609 1.00000  
## pH_median           0.63014 -0.77648 0.6622 0.08791 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
fdems_ef <- envfit(fdems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(6)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
fdems_ef
## 
## ***VECTORS
## 
##        NMDS1   NMDS2     r2  Pr(>r)  
## [1,] 0.99444 0.10528 0.8207 0.03996 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdems_efp <- p.adjust.envfit(fdems_ef)
## Adjustment of significance by bonferroni method
fdems_efp
## 
## ***VECTORS
## 
##        NMDS1   NMDS2     r2  Pr(>r)  
## [1,] 0.99444 0.10528 0.8207 0.03996 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
fdeom_ef <- envfit(fdeom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
fdeom_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2  Pr(>r)  
## temperature_median  0.28445 -0.95869 0.0400 0.78621  
## salinity_median     0.99869 -0.05117 0.5614 0.07592 .
## oxygen_median       0.98315 -0.18282 0.5159 0.24176  
## pH_median           0.99360 -0.11295 0.3615 0.10889  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdeom_efp <- p.adjust.envfit(fdeom_ef)
## Adjustment of significance by bonferroni method
fdeom_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2 Pr(>r)
## temperature_median  0.28445 -0.95869 0.0400 1.0000
## salinity_median     0.99869 -0.05117 0.5614 0.3037
## oxygen_median       0.98315 -0.18282 0.5159 0.9670
## pH_median           0.99360 -0.11295 0.3615 0.4356
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
fdeso_ef <- envfit(fdeso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(6)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
fdeso_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## [1,]  0.90449 -0.42649 0.8323 0.01598 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdeso_efp <- p.adjust.envfit(fdeso_ef)
## Adjustment of significance by bonferroni method
fdeso_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## [1,]  0.90449 -0.42649 0.8323 0.01598 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes
fds_ef <- envfit(fds_NMDS, env[c(1:2,4,5,12,17,21:22),c(28)], permutations = 1000, na.rm = TRUE)
fds_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2   Pr(>r)   
## [1,]  0.35483 -0.93493 0.8808 0.003996 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 1000
fds_efp <- p.adjust.envfit(fds_ef)
## Adjustment of significance by bonferroni method
fds_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2   Pr(>r)   
## [1,]  0.35483 -0.93493 0.8808 0.003996 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 1000
### Biogeographic
# All sites for figure
fdb_ef <- envfit(fdb_NMDS, env[-c(8,20),c(39,40)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
fdb_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2  Pr(>r)  
## A     0.79069 -0.61221 0.2147 0.08292 .
## minD -0.99118  0.13252 0.7123 0.14286  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdb_efp <- p.adjust.envfit(fdb_ef)
## Adjustment of significance by bonferroni method
fdb_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2     r2 Pr(>r)
## A     0.79069 -0.61221 0.2147 0.1658
## minD -0.99118  0.13252 0.7123 0.2857
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
fdba_ef <- envfit(fdb_NMDS, env[-c(8,20),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
fdba_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2  Pr(>r)  
## volume_m3_w_chemocline      0.94404 -0.32984 0.1475 0.14785  
## volume_m3                   0.92115 -0.38922 0.1368 0.15385  
## surface_area_m2             0.79069 -0.61221 0.2147 0.06194 .
## distance_to_ocean_min_m    -0.99118  0.13252 0.7123 0.13986  
## distance_to_ocean_mean_m   -0.91482  0.40386 0.6426 0.43057  
## distance_to_ocean_median_m -0.91389  0.40596 0.6420 0.40859  
## tidal_lag_time_minutes     -0.81089  0.58520 0.5946 0.77922  
## tidal_efficiency            0.74628 -0.66563 0.6686 0.19580  
## perimeter_fromSat           0.80695 -0.59061 0.2054 0.09990 .
## max_depth                  -0.95630  0.29238 0.0859 0.94106  
## logArea                     0.58897 -0.80815 0.1041 0.23676  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdba_efp <- p.adjust.envfit(fdba_ef)
## Adjustment of significance by bonferroni method
fdba_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.94404 -0.32984 0.1475 1.0000
## volume_m3                   0.92115 -0.38922 0.1368 1.0000
## surface_area_m2             0.79069 -0.61221 0.2147 0.6813
## distance_to_ocean_min_m    -0.99118  0.13252 0.7123 1.0000
## distance_to_ocean_mean_m   -0.91482  0.40386 0.6426 1.0000
## distance_to_ocean_median_m -0.91389  0.40596 0.6420 1.0000
## tidal_lag_time_minutes     -0.81089  0.58520 0.5946 1.0000
## tidal_efficiency            0.74628 -0.66563 0.6686 1.0000
## perimeter_fromSat           0.80695 -0.59061 0.2054 1.0000
## max_depth                  -0.95630  0.29238 0.0859 1.0000
## logArea                     0.58897 -0.80815 0.1041 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
fdbms_ef <- envfit(fdbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
fdbms_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline     -0.00335 -0.99999 0.1023 0.6563
## volume_m3                  -0.23405 -0.97223 0.2640 0.4535
## surface_area_m2            -0.30354 -0.95282 0.2595 0.4176
## distance_to_ocean_min_m    -0.80428 -0.59426 0.4986 0.1678
## distance_to_ocean_mean_m   -0.51381 -0.85790 0.4820 0.2178
## distance_to_ocean_median_m -0.52684 -0.84996 0.5015 0.1918
## tidal_lag_time_minutes     -0.66989 -0.74246 0.1822 0.8801
## tidal_efficiency            0.89054  0.45491 0.2443 0.5305
## perimeter_fromSat          -0.47885 -0.87789 0.1380 0.4635
## max_depth                  -0.31858 -0.94790 0.1382 0.6603
## logArea                    -0.28522 -0.95846 0.1268 0.4905
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdbms_efp <- p.adjust.envfit(fdbms_ef)
## Adjustment of significance by bonferroni method
fdbms_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline     -0.00335 -0.99999 0.1023      1
## volume_m3                  -0.23405 -0.97223 0.2640      1
## surface_area_m2            -0.30354 -0.95282 0.2595      1
## distance_to_ocean_min_m    -0.80428 -0.59426 0.4986      1
## distance_to_ocean_mean_m   -0.51381 -0.85790 0.4820      1
## distance_to_ocean_median_m -0.52684 -0.84996 0.5015      1
## tidal_lag_time_minutes     -0.66989 -0.74246 0.1822      1
## tidal_efficiency            0.89054  0.45491 0.2443      1
## perimeter_fromSat          -0.47885 -0.87789 0.1380      1
## max_depth                  -0.31858 -0.94790 0.1382      1
## logArea                    -0.28522 -0.95846 0.1268      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
fdbom_ef <- envfit(fdbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
fdbom_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.13170 -0.99129 0.2733 0.3666
## volume_m3                   0.13131 -0.99134 0.2728 0.3656
## surface_area_m2             0.15169 -0.98843 0.3040 0.4016
## distance_to_ocean_min_m    -0.87056  0.49206 0.3997 0.3796
## distance_to_ocean_mean_m   -0.81767  0.57569 0.3986 0.5295
## distance_to_ocean_median_m -0.83592  0.54885 0.3857 0.5694
## tidal_lag_time_minutes     -0.89856  0.43884 0.2671 0.5085
## tidal_efficiency            0.91858 -0.39523 0.2372 0.5944
## perimeter_fromSat           0.26271 -0.96487 0.2274 0.5924
## max_depth                   0.12578 -0.99206 0.2460 0.1988
## logArea                     0.31719 -0.94836 0.2397 0.4585
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdbom_efp <- p.adjust.envfit(fdbom_ef)
## Adjustment of significance by bonferroni method
fdbom_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.13170 -0.99129 0.2733      1
## volume_m3                   0.13131 -0.99134 0.2728      1
## surface_area_m2             0.15169 -0.98843 0.3040      1
## distance_to_ocean_min_m    -0.87056  0.49206 0.3997      1
## distance_to_ocean_mean_m   -0.81767  0.57569 0.3986      1
## distance_to_ocean_median_m -0.83592  0.54885 0.3857      1
## tidal_lag_time_minutes     -0.89856  0.43884 0.2671      1
## tidal_efficiency            0.91858 -0.39523 0.2372      1
## perimeter_fromSat           0.26271 -0.96487 0.2274      1
## max_depth                   0.12578 -0.99206 0.2460      1
## logArea                     0.31719 -0.94836 0.2397      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
fdbso_ef <- envfit(fdbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
fdbso_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.99010  0.14035 0.1084 0.4915
## volume_m3                   0.99740  0.07206 0.1000 0.5564
## surface_area_m2             0.99882 -0.04861 0.1525 0.7013
## distance_to_ocean_min_m    -0.99978 -0.02093 0.5928 0.2198
## distance_to_ocean_mean_m   -0.99024 -0.13937 0.5002 0.4505
## distance_to_ocean_median_m -0.98841 -0.15182 0.5156 0.3996
## tidal_lag_time_minutes     -0.84935  0.52784 0.3773 0.9810
## tidal_efficiency            0.80556 -0.59251 0.5135 0.6773
## perimeter_fromSat           0.94538 -0.32598 0.1479 0.7493
## max_depth                  -0.82197 -0.56953 0.0417 0.9071
## logArea                     0.56914 -0.82224 0.0960 0.5964
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fdbso_efp <- p.adjust.envfit(fdbso_ef)
## Adjustment of significance by bonferroni method
fdbso_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.99010  0.14035 0.1084      1
## volume_m3                   0.99740  0.07206 0.1000      1
## surface_area_m2             0.99882 -0.04861 0.1525      1
## distance_to_ocean_min_m    -0.99978 -0.02093 0.5928      1
## distance_to_ocean_mean_m   -0.99024 -0.13937 0.5002      1
## distance_to_ocean_median_m -0.98841 -0.15182 0.5156      1
## tidal_lag_time_minutes     -0.84935  0.52784 0.3773      1
## tidal_efficiency            0.80556 -0.59251 0.5135      1
## perimeter_fromSat           0.94538 -0.32598 0.1479      1
## max_depth                  -0.82197 -0.56953 0.0417      1
## logArea                     0.56914 -0.82224 0.0960      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
### Species
fds_ef <- envfit(fd_NMDS, surveyed_sites_lake, permutations = 1000, na.rm = TRUE)
fds_ef
## 
## ***VECTORS
## 
##                                    NMDS1    NMDS2     r2   Pr(>r)    
## Abudefduf_lorenzi               -0.23604 -0.97174 0.0149 0.940060    
## Abudefduf_septemfasciatus        0.99528  0.09709 0.0169 0.679321    
## Abudefduf_sexfasciatus          -0.23604 -0.97174 0.0149 0.940060    
## Acanthurus_lineatus              0.63016  0.77647 0.0213 0.397602    
## Acanthurus_nigricauda            0.97616  0.21705 0.0556 0.536464    
## Acanthurus_sp                    0.90503 -0.42535 0.0199 0.485514    
## Acanthurus_xanthopterus          0.75012  0.66130 0.1882 0.162837    
## Acentrogobius_janthinopterus    -0.83821  0.54535 0.3818 0.009990 ** 
## Amblyeleotris_gymnocephala       0.95123  0.30849 0.0155 0.712288    
## Amblyglyphidodon_curacao         0.60738 -0.79441 0.0382 0.681319    
## Amblygobius_buanensis            0.85471  0.51911 0.3321 0.006993 ** 
## Amblygobius_decussatus           0.25880 -0.96593 0.0856 0.227772    
## Amblygobius_esakiae              0.90503 -0.42535 0.0199 0.485514    
## Amblygobius_linki                0.66607  0.74589 0.0187 0.589411    
## Amblygobius_phalaena             0.97143  0.23734 0.0315 0.819181    
## Amphiprion_clarkii               0.96121 -0.27583 0.0202 0.441558    
## Ancistrogobius_dipus             0.71133  0.70286 0.0134 0.796204    
## Apogonichthyoides_melas          0.71133  0.70286 0.0134 0.796204    
## Arcygobius_baliurus              0.81541  0.57889 0.0155 0.694306    
## Arothron_reticularis             0.74787  0.66385 0.0129 0.858142    
## Asterropteryx_semipunctata       0.99445  0.10516 0.0539 0.554446    
## Asterropteryx_sp                 0.66607  0.74589 0.0187 0.589411    
## Atherinomorus_lacunosus          0.97434  0.22506 0.0160 0.852148    
## Atule_mate                       0.63016  0.77647 0.0213 0.397602    
## Balistoides_viridescens          0.89130  0.45342 0.1281 0.300699    
## Bolbometopon_muricatum           0.36614 -0.93056 0.0885 0.313686    
## Caesio_caerulaurea               0.71464  0.69950 0.0341 0.705295    
## Caesio_cuning                    0.48562 -0.87417 0.1028 0.392607    
## Caesio_teres                     0.95123  0.30849 0.0155 0.712288    
## Cantherhines_dumerilii           0.96121 -0.27583 0.0202 0.441558    
## Canthigaster_bennetti            0.96121 -0.27583 0.0202 0.441558    
## Canthigaster_solandri            0.99528  0.09709 0.0169 0.679321    
## Caranx_ignobilis                 0.98711  0.16003 0.0146 0.756244    
## Caranx_melampygus                0.38822 -0.92157 0.0053 0.986014    
## Caranx_papuensis                 0.95123  0.30849 0.0155 0.712288    
## Caranx_sexfasciatus              0.80521  0.59299 0.0939 0.447552    
## Cephalopholis_argus             -0.44261 -0.89672 0.2031 0.189810    
## Cephalopholis_boenak             0.93543 -0.35350 0.0421 0.552448    
## Chaetodon_auriga                 0.96905 -0.24688 0.2867 0.035964 *  
## Chaetodon_bennetti               0.90821  0.41852 0.0416 0.556444    
## Chaetodon_ephippium              0.89898 -0.43800 0.2449 0.061938 .  
## Chaetodon_kleinii                0.92236  0.38633 0.0607 0.466533    
## Chaetodon_lunula                 0.87881  0.47717 0.1594 0.161838    
## Chaetodon_lunulatus              0.75306 -0.65795 0.1443 0.227772    
## Chaetodon_melannotus             0.71741  0.69665 0.0193 0.543457    
## Chaetodon_ocellicaudus           0.98711  0.16003 0.0146 0.756244    
## Chaetodon_octofasciatus          0.93543 -0.35350 0.0421 0.552448    
## Chaetodon_rafflesii              0.98855  0.15093 0.0850 0.425574    
## Chaetodon_semeion                0.95137  0.30805 0.0401 0.568432    
## Chaetodon_trifascialis           0.96121 -0.27583 0.0202 0.441558    
## Chaetodon_ulietensis             0.51780 -0.85550 0.1000 0.292707    
## Chaetodon_vagabundus             0.97243 -0.23319 0.2893 0.029970 *  
## Chaetodontoplus_poliourus        0.96121 -0.27583 0.0202 0.441558    
## Cheilinus_fasciatus              0.98894  0.14830 0.0648 0.472527    
## Cheilinus_trilobatus             0.63016  0.77647 0.0213 0.397602    
## Cheilinus_undulatus              0.25413 -0.96717 0.0745 0.348651    
## Cheilodipterus_artus             0.21333 -0.97698 0.0100 0.866134    
## Cheilodipterus_isostigma         0.27334 -0.96192 0.0694 0.393606    
## Cheilodipterus_quinquelineatus   0.90937 -0.41598 0.2468 0.062937 .  
## Cheilodipterus_singapurensis     0.75461  0.65618 0.0320 0.821179    
## Chlorurus_bleekeri               0.51454 -0.85747 0.1093 0.276723    
## Chlorurus_microrhinos            0.99678 -0.08023 0.0361 0.655345    
## Chlorurus_spilurus               0.98855  0.15093 0.0850 0.425574    
## Choerodon_anchorago              0.99634 -0.08545 0.3920 0.000999 ***
## Chromis_viridis                  0.42128 -0.90693 0.0765 0.415584    
## Chrysiptera_biocellata           0.93032  0.36674 0.0338 0.756244    
## Chrysiptera_oxycephala           0.35038 -0.93661 0.0784 0.478521    
## Corythoichthys_ocellatus         0.96121 -0.27583 0.0202 0.441558    
## Cryptocentrus_caeruleomaculatus  0.67552 -0.73734 0.0692 0.542458    
## Cryptocentrus_cyanospilotus      0.20804  0.97812 0.0024 1.000000    
## Cryptocentrus_leptocephalus      0.91608  0.40099 0.0314 0.826174    
## Cryptocentrus_strigilliceps      0.51009 -0.86012 0.0988 0.336663    
## Ctenochaetus_striatus            0.16567 -0.98618 0.0700 0.516484    
## Ctenogobiops_pomastictus         0.71133  0.70286 0.0134 0.796204    
## Cymbacephalus_beauforti          0.98711  0.16003 0.0146 0.756244    
## Dascyllus_aruanus                0.59232 -0.80570 0.0848 0.431568    
## Dascyllus_trimaculatus           0.96121 -0.27583 0.0202 0.441558    
## Diplogrammus_goramensis          0.87290  0.48789 0.0290 0.887113    
## Diproctacanthus_xanthurus        0.90821  0.41852 0.0416 0.556444    
## Dischistodus_chrysopoecilus      0.88448  0.46658 0.0280 0.918082    
## Dischistodus_perspicillatus      0.80273 -0.59634 0.1279 0.292707    
## Doboatherina_duodecimalis        0.28051 -0.95985 0.1295 0.267732    
## Eleotris_fusca                  -0.30762  0.95151 0.3599 0.028971 *  
## Epibulus_brevis                  0.60942 -0.79285 0.1286 0.212787    
## Epinephelus_coeruleopunctatus    0.73539  0.67765 0.0358 0.678322    
## Epinephelus_merra                0.53712 -0.84351 0.1002 0.290709    
## Epinephelus_sp                   0.73008  0.68336 0.0125 0.906094    
## Eviota_atriventris               0.96020  0.27931 0.0527 0.563437    
## Eviota_bifasciata                0.82173 -0.56988 0.1761 0.128871    
## Eviota_fallax                    0.73397 -0.67919 0.1533 0.160839    
## Eviota_lachdeberei               0.85291  0.52206 0.0721 0.566434    
## Eviota_maculosa                  0.13342 -0.99106 0.0988 0.310689    
## Eviota_sigillata                 0.83462  0.55083 0.0361 0.656344    
## Eviota_sp                        0.66607  0.74589 0.0187 0.589411    
## Eviota_storthynx                 0.84717  0.53133 0.0539 0.538462    
## Exyrias_belissimus               0.91233 -0.40947 0.1514 0.198801    
## Exyrias_puntang                 -0.04985  0.99876 0.2868 0.022977 *  
## Favonigobius_reichei             0.91608  0.40099 0.0314 0.826174    
## Fibramia_lateralis               0.04555 -0.99896 0.0231 0.810190    
## Fibramia_thermalis               0.66629 -0.74569 0.0970 0.373626    
## Fusigobius_signipinnis           0.99878  0.04934 0.0549 0.548452    
## Gerres_erythrourus               0.98711  0.16003 0.0146 0.756244    
## Gerres_oyena                     0.99183  0.12758 0.0330 0.791209    
## Gladiogobius_ensifer             0.13342 -0.99106 0.0988 0.310689    
## Gnathanodon_speciosus            0.49542  0.86865 0.0130 0.983017    
## Gobiodon_okinawae                0.63016  0.77647 0.0213 0.397602    
## Gymnothorax_pictus               0.93032  0.36674 0.0338 0.756244    
## Halichoeres_chloropterus         0.77484 -0.63216 0.0536 0.619381    
## Halichoeres_leucurus             0.98247  0.18643 0.0862 0.428571    
## Halichoeres_marginatus           0.98711  0.16003 0.0146 0.756244    
## Halichoeres_melanurus            0.18557 -0.98263 0.0488 0.642358    
## Halichoeres_papilionaceus        0.80966  0.58690 0.0555 0.530470    
## Halichoeres_trimaculatus         0.99183  0.12758 0.0330 0.791209    
## Hemiglyphidodon_plagiometopon    0.45124 -0.89240 0.1069 0.347652    
## Hemigymnus_melapterus            0.99678 -0.08023 0.0361 0.655345    
## Heniochus_chrysostomus           0.93765  0.34758 0.0595 0.492507    
## Heniochus_monoceros              0.84717  0.53133 0.0539 0.538462    
## Herklotsichthys_quadrimaculatus  0.98711  0.16003 0.0146 0.756244    
## Hipposcarus_longiceps            0.44740 -0.89434 0.1113 0.283716    
## Istigobius_decoratus             0.98711  0.16003 0.0146 0.756244    
## Koumansetta_rainfordi            0.96121 -0.27583 0.0202 0.441558    
## Kyphosus_cinerascens            -0.21315 -0.97702 0.0174 0.905095    
## Lethrinus_erythropterus          0.88112  0.47288 0.0682 0.594406    
## Lethrinus_harak                  0.83503  0.55020 0.1182 0.333666    
## Lethrinus_obsoletus              0.71133  0.70286 0.0134 0.796204    
## Lethrinus_olivaceus              0.71133  0.70286 0.0134 0.796204    
## Lutjanus_argentimaculatus        0.42547  0.90497 0.1341 0.256743    
## Lutjanus_biguttatus             -0.25335 -0.96737 0.0169 0.932068    
## Lutjanus_bohar                   0.95137  0.30805 0.0401 0.568432    
## Lutjanus_decussatus              0.71133  0.70286 0.0134 0.796204    
## Lutjanus_ehrenbergii             0.78771  0.61604 0.0911 0.408591    
## Lutjanus_fulviflamma             0.87488  0.48435 0.0859 0.477522    
## Lutjanus_fulvus                  0.55443  0.83223 0.3632 0.007992 ** 
## Lutjanus_gibbus                  0.91822  0.39606 0.0762 0.493506    
## Lutjanus_monostigma              0.89152  0.45297 0.0285 0.886114    
## Lutjanus_russellii               0.66607  0.74589 0.0187 0.589411    
## Macrodontogobius_wilburi         0.75306 -0.65795 0.1443 0.227772    
## Megalops_cyprinoides            -0.17801  0.98403 0.5178 0.051948 .  
## Meiacanthus_ditrema              0.90503 -0.42535 0.0199 0.485514    
## Meiacanthus_grammistes           0.93543 -0.35350 0.0421 0.552448    
## Monodactylus_argenteus           0.68024  0.73299 0.0316 0.801199    
## Monotaxis_grandoculis           -0.02102 -0.99978 0.0121 0.869131    
## Mugilogobius_cavifrons          -0.60174  0.79870 0.2146 0.144855    
## Mulloidichthys_flavolineatus     0.98711  0.16003 0.0146 0.756244    
## Myripristis_adusta               0.81258  0.58285 0.1256 0.293706    
## Myripristis_sp                   0.81541  0.57889 0.0155 0.694306    
## Myripristis_violacea             0.96121 -0.27583 0.0202 0.441558    
## Naso_brevirostris                0.98495  0.17286 0.0776 0.515485    
## Naso_vlamingii                   0.87638  0.48162 0.0571 0.507493    
## Nectamia_viria                   0.71741  0.69665 0.0193 0.543457    
## Neoglyphidodon_melas            -0.44261 -0.89672 0.2031 0.189810    
## Neoniphon_argenteus              0.77492  0.63206 0.0508 0.619381    
## Neoniphon_opercularis           -0.44261 -0.89672 0.2031 0.189810    
## Neoniphon_sammara                0.95549  0.29501 0.0951 0.408591    
## Neopomacentrus_nemurus           0.25265 -0.96756 0.0635 0.516484    
## Omobranchus_obliquus             0.60663  0.79498 0.0333 0.765235    
## Oplopomops_diacanthus            0.98711  0.16003 0.0146 0.756244    
## Oxycheilinus_celebicus           0.22026 -0.97544 0.0157 0.798202    
## Parapercis_cylindrica            0.98711  0.16003 0.0146 0.756244    
## Parioglossus_formosus           -0.10981  0.99395 0.2528 0.101898    
## Parioglossus_philippinus         0.75917  0.65090 0.0543 0.517483    
## Parioglossus_sp                  0.98512  0.17185 0.0366 0.651349    
## Parupeneus_barberinus            0.96514  0.26174 0.1647 0.157842    
## Parupeneus_multifasciatus        0.88390 -0.46768 0.2084 0.103896    
## Pentapodus_trivittatus           0.87597 -0.48237 0.2074 0.104895    
## Periophthalmus_argentilineatus   0.99528  0.09709 0.0169 0.679321    
## Pervagor_janthinosoma            0.63016  0.77647 0.0213 0.397602    
## Pervagor_nigrolineatus           0.37832 -0.92567 0.0786 0.384615    
## Petroscirtes_breviceps           0.99810  0.06157 0.1038 0.343656    
## Platax_orbicularis               0.76468  0.64441 0.0303 0.852148    
## Platax_pinnatus                  0.95123  0.30849 0.0155 0.712288    
## Platax_sp                        0.73008  0.68336 0.0125 0.906094    
## Plectorhinchus_albovittatus      0.66607  0.74589 0.0187 0.589411    
## Plectorhinchus_chaetodonoides    0.13342 -0.99106 0.0988 0.310689    
## Plectorhinchus_gibbosus          0.98711  0.16003 0.0146 0.756244    
## Plectropomus_leopardus           0.96121 -0.27583 0.0202 0.441558    
## Pomacanthus_sexstriatus          0.86223  0.50652 0.0349 0.698302    
## Pomacentrus_adelus               0.99528  0.09709 0.0169 0.679321    
## Pomacentrus_amboinensis          0.96121 -0.27583 0.0202 0.441558    
## Pomacentrus_burroughi            0.84161 -0.54008 0.1823 0.120879    
## Pomacentrus_grammorhynchus       0.98711  0.16003 0.0146 0.756244    
## Pomacentrus_nigromanus          -0.15413 -0.98805 0.0249 0.864136    
## Pomacentrus_pavo                 0.96121 -0.27583 0.0202 0.441558    
## Pomacentrus_simsiang             0.92787 -0.37291 0.2872 0.019980 *  
## Pomacentrus_sp                  -0.32954 -0.94414 0.0638 0.480519    
## Pomacentrus_taeniometopon        0.66607  0.74589 0.0187 0.589411    
## Pseudobalistes_flavimarginatus   0.95774  0.28762 0.1323 0.283716    
## Pseudochromis_fuscus             0.96121 -0.27583 0.0202 0.441558    
## Ptereleotris_brachyptera         1.00000 -0.00178 0.0370 0.600400    
## Ptereleotris_evides              0.96121 -0.27583 0.0202 0.441558    
## Pterocaesio_tile                 0.71133  0.70286 0.0134 0.796204    
## Pterocaesio_trilineata           0.71741  0.69665 0.0193 0.543457    
## Pterois_volitans                 0.95123  0.30849 0.0155 0.712288    
## Rastrelliger_kanagurta           0.31497 -0.94910 0.0673 0.425574    
## Rhabdamia_gracilis               0.83306  0.55318 0.0727 0.535465    
## Rhinecanthus_aculeatus           0.88114  0.47286 0.0607 0.490509    
## Salarias_segmentatus             0.90429  0.42691 0.1687 0.157842    
## Sargocentron_diadema             0.67154  0.74097 0.0425 0.533467    
## Sargocentron_spiniferum          0.81541  0.57889 0.0155 0.694306    
## Saurida_gracilis                 0.63016  0.77647 0.0213 0.397602    
## Scarus_dimidiatus                0.98855  0.15093 0.0850 0.425574    
## Scarus_flavipectoralis           0.90821  0.41852 0.0416 0.556444    
## Scarus_ghobban                   0.98512  0.17185 0.0366 0.651349    
## Scarus_hypselopterus             0.63016  0.77647 0.0213 0.397602    
## Scarus_oviceps                   0.90503 -0.42535 0.0199 0.485514    
## Scarus_psittacus                 0.98114  0.19329 0.1072 0.312687    
## Scarus_quoyi                     0.96121 -0.27583 0.0202 0.441558    
## Scarus_rivulatus                 0.25880 -0.96593 0.0856 0.227772    
## Scatophagus_argus                0.74787  0.66385 0.0129 0.858142    
## Scolopsis_ciliata                0.73160 -0.68174 0.1706 0.151848    
## Scolopsis_lineata                0.91608  0.40099 0.0314 0.826174    
## Scolopsis_margaritifera          0.35816 -0.93366 0.0807 0.458541    
## Scolopsis_trilineata             0.74721  0.66459 0.0530 0.575425    
## Siganus_doliatus                 0.36614 -0.93056 0.0885 0.313686    
## Siganus_fuscescens               0.77735  0.62907 0.0530 0.562438    
## Siganus_lineatus                 0.58175  0.81337 0.2995 0.023976 *  
## Siganus_puellus                  0.35553 -0.93466 0.0998 0.293706    
## Siganus_punctatissimus           0.96121 -0.27583 0.0202 0.441558    
## Siganus_punctatus                0.96121 -0.27583 0.0202 0.441558    
## Signigobius_biocellatus          0.63016  0.77647 0.0213 0.397602    
## Silhouettea_sp                   0.20804  0.97812 0.0024 1.000000    
## Sphaeramia_nematoptera           0.71648 -0.69761 0.1362 0.250749    
## Sphaeramia_orbicularis           0.63963 -0.76869 0.1605 0.206793    
## Sphyraena_barracuda              0.83901  0.54412 0.0921 0.405594    
## Sphyraena_obtusata               0.80339  0.59545 0.0117 0.946054    
## Sphyraena_qenie                  0.81541  0.57889 0.0155 0.694306    
## Stegastes_nigricans              0.98711  0.16003 0.0146 0.756244    
## Stegastes_punctatus              0.80694  0.59063 0.0365 0.635365    
## Stethojulis_strigiventer         0.95267  0.30400 0.0516 0.590410    
## Strongylura_incisa               0.71192  0.70226 0.0382 0.634366    
## Synodus_variegatus               0.31497 -0.94910 0.0673 0.425574    
## Taeniamia_zosterophora           0.35696 -0.93412 0.0896 0.357642    
## Taeniurops_meyeni                0.71133  0.70286 0.0134 0.796204    
## Toxotes_jaculatrix               0.87121  0.49091 0.1170 0.337662    
## Tylosurus_punctulatus            0.88859  0.45870 0.0283 0.881119    
## Upeneus_taeniopterus             0.81541  0.57889 0.0155 0.694306    
## Valenciennea_muralis             0.83345  0.55260 0.0488 0.626374    
## Valenciennea_parva               0.95123  0.30849 0.0155 0.712288    
## Valenciennea_randalli            0.95123  0.30849 0.0155 0.712288    
## Zanclus_cornutus                 0.99878  0.04934 0.0549 0.548452    
## Zebrasoma_scopas                 0.96121 -0.27583 0.0202 0.441558    
## Zebrasoma_velifer                0.78688 -0.61711 0.1816 0.127872    
## Zenarchopterus_dispar            0.98230 -0.18729 0.2631 0.058941 .  
## Zenarchopterus_gilli             0.99844 -0.05578 0.0867 0.455544    
## Zoramia_leptacanthus             0.98711  0.16003 0.0146 0.756244    
## Zoramia_viridiventer             0.51118 -0.85947 0.0923 0.371628    
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 1000
# By stratification
fds_ef <- envfit(fd_NMDS, surveyed_sites_lake, permutations = 1000, na.rm = TRUE, strata = env[-20,19])
fds_ef
## 
## ***VECTORS
## 
##                                    NMDS1    NMDS2     r2  Pr(>r)  
## Abudefduf_lorenzi               -0.23604 -0.97174 0.0149 0.88711  
## Abudefduf_septemfasciatus        0.99528  0.09709 0.0169 0.34865  
## Abudefduf_sexfasciatus          -0.23604 -0.97174 0.0149 0.88711  
## Acanthurus_lineatus              0.63016  0.77647 0.0213 0.51249  
## Acanthurus_nigricauda            0.97616  0.21705 0.0556 0.55345  
## Acanthurus_sp                    0.90503 -0.42535 0.0199 0.82817  
## Acanthurus_xanthopterus          0.75012  0.66130 0.1882 0.24875  
## Acentrogobius_janthinopterus    -0.83821  0.54535 0.3818 0.35964  
## Amblyeleotris_gymnocephala       0.95123  0.30849 0.0155 0.62937  
## Amblyglyphidodon_curacao         0.60738 -0.79441 0.0382 0.85215  
## Amblygobius_buanensis            0.85471  0.51911 0.3321 0.36164  
## Amblygobius_decussatus           0.25880 -0.96593 0.0856 0.32068  
## Amblygobius_esakiae              0.90503 -0.42535 0.0199 0.82817  
## Amblygobius_linki                0.66607  0.74589 0.0187 0.26074  
## Amblygobius_phalaena             0.97143  0.23734 0.0315 0.91109  
## Amphiprion_clarkii               0.96121 -0.27583 0.0202 0.69730  
## Ancistrogobius_dipus             0.71133  0.70286 0.0134 0.73327  
## Apogonichthyoides_melas          0.71133  0.70286 0.0134 0.73327  
## Arcygobius_baliurus              0.81541  0.57889 0.0155 0.49151  
## Arothron_reticularis             0.74787  0.66385 0.0129 0.86014  
## Asterropteryx_semipunctata       0.99445  0.10516 0.0539 0.91309  
## Asterropteryx_sp                 0.66607  0.74589 0.0187 0.26074  
## Atherinomorus_lacunosus          0.97434  0.22506 0.0160 0.85415  
## Atule_mate                       0.63016  0.77647 0.0213 0.51249  
## Balistoides_viridescens          0.89130  0.45342 0.1281 0.86513  
## Bolbometopon_muricatum           0.36614 -0.93056 0.0885 0.48551  
## Caesio_caerulaurea               0.71464  0.69950 0.0341 0.28472  
## Caesio_cuning                    0.48562 -0.87417 0.1028 0.57742  
## Caesio_teres                     0.95123  0.30849 0.0155 0.62937  
## Cantherhines_dumerilii           0.96121 -0.27583 0.0202 0.69730  
## Canthigaster_bennetti            0.96121 -0.27583 0.0202 0.69730  
## Canthigaster_solandri            0.99528  0.09709 0.0169 0.34865  
## Caranx_ignobilis                 0.98711  0.16003 0.0146 1.00000  
## Caranx_melampygus                0.38822 -0.92157 0.0053 0.97702  
## Caranx_papuensis                 0.95123  0.30849 0.0155 0.62937  
## Caranx_sexfasciatus              0.80521  0.59299 0.0939 0.47952  
## Cephalopholis_argus             -0.44261 -0.89672 0.2031 0.48951  
## Cephalopholis_boenak             0.93543 -0.35350 0.0421 0.67133  
## Chaetodon_auriga                 0.96905 -0.24688 0.2867 0.83017  
## Chaetodon_bennetti               0.90821  0.41852 0.0416 0.74625  
## Chaetodon_ephippium              0.89898 -0.43800 0.2449 0.84216  
## Chaetodon_kleinii                0.92236  0.38633 0.0607 0.71029  
## Chaetodon_lunula                 0.87881  0.47717 0.1594 0.09191 .
## Chaetodon_lunulatus              0.75306 -0.65795 0.1443 0.63337  
## Chaetodon_melannotus             0.71741  0.69665 0.0193 0.11988  
## Chaetodon_ocellicaudus           0.98711  0.16003 0.0146 1.00000  
## Chaetodon_octofasciatus          0.93543 -0.35350 0.0421 0.67133  
## Chaetodon_rafflesii              0.98855  0.15093 0.0850 1.00000  
## Chaetodon_semeion                0.95137  0.30805 0.0401 0.39960  
## Chaetodon_trifascialis           0.96121 -0.27583 0.0202 0.69730  
## Chaetodon_ulietensis             0.51780 -0.85550 0.1000 0.42857  
## Chaetodon_vagabundus             0.97243 -0.23319 0.2893 0.45455  
## Chaetodontoplus_poliourus        0.96121 -0.27583 0.0202 0.69730  
## Cheilinus_fasciatus              0.98894  0.14830 0.0648 0.85315  
## Cheilinus_trilobatus             0.63016  0.77647 0.0213 0.51249  
## Cheilinus_undulatus              0.25413 -0.96717 0.0745 0.47852  
## Cheilodipterus_artus             0.21333 -0.97698 0.0100 0.86613  
## Cheilodipterus_isostigma         0.27334 -0.96192 0.0694 0.18182  
## Cheilodipterus_quinquelineatus   0.90937 -0.41598 0.2468 0.79121  
## Cheilodipterus_singapurensis     0.75461  0.65618 0.0320 0.56044  
## Chlorurus_bleekeri               0.51454 -0.85747 0.1093 0.66733  
## Chlorurus_microrhinos            0.99678 -0.08023 0.0361 0.93906  
## Chlorurus_spilurus               0.98855  0.15093 0.0850 1.00000  
## Choerodon_anchorago              0.99634 -0.08545 0.3920 0.79920  
## Chromis_viridis                  0.42128 -0.90693 0.0765 0.43057  
## Chrysiptera_biocellata           0.93032  0.36674 0.0338 0.33067  
## Chrysiptera_oxycephala           0.35038 -0.93661 0.0784 0.71928  
## Corythoichthys_ocellatus         0.96121 -0.27583 0.0202 0.69730  
## Cryptocentrus_caeruleomaculatus  0.67552 -0.73734 0.0692 0.43057  
## Cryptocentrus_cyanospilotus      0.20804  0.97812 0.0024 1.00000  
## Cryptocentrus_leptocephalus      0.91608  0.40099 0.0314 0.92208  
## Cryptocentrus_strigilliceps      0.51009 -0.86012 0.0988 0.48152  
## Ctenochaetus_striatus            0.16567 -0.98618 0.0700 0.73127  
## Ctenogobiops_pomastictus         0.71133  0.70286 0.0134 0.73327  
## Cymbacephalus_beauforti          0.98711  0.16003 0.0146 1.00000  
## Dascyllus_aruanus                0.59232 -0.80570 0.0848 0.83816  
## Dascyllus_trimaculatus           0.96121 -0.27583 0.0202 0.69730  
## Diplogrammus_goramensis          0.87290  0.48789 0.0290 0.94605  
## Diproctacanthus_xanthurus        0.90821  0.41852 0.0416 0.74625  
## Dischistodus_chrysopoecilus      0.88448  0.46658 0.0280 0.98102  
## Dischistodus_perspicillatus      0.80273 -0.59634 0.1279 0.88112  
## Doboatherina_duodecimalis        0.28051 -0.95985 0.1295 0.18681  
## Eleotris_fusca                  -0.30762  0.95151 0.3599 0.27373  
## Epibulus_brevis                  0.60942 -0.79285 0.1286 0.48851  
## Epinephelus_coeruleopunctatus    0.73539  0.67765 0.0358 0.23277  
## Epinephelus_merra                0.53712 -0.84351 0.1002 0.44855  
## Epinephelus_sp                   0.73008  0.68336 0.0125 0.89111  
## Eviota_atriventris               0.96020  0.27931 0.0527 0.71528  
## Eviota_bifasciata                0.82173 -0.56988 0.1761 0.47752  
## Eviota_fallax                    0.73397 -0.67919 0.1533 0.44855  
## Eviota_lachdeberei               0.85291  0.52206 0.0721 0.74525  
## Eviota_maculosa                  0.13342 -0.99106 0.0988 0.33167  
## Eviota_sigillata                 0.83462  0.55083 0.0361 0.18681  
## Eviota_sp                        0.66607  0.74589 0.0187 0.26074  
## Eviota_storthynx                 0.84717  0.53133 0.0539 0.63936  
## Exyrias_belissimus               0.91233 -0.40947 0.1514 0.95504  
## Exyrias_puntang                 -0.04985  0.99876 0.2868 0.18781  
## Favonigobius_reichei             0.91608  0.40099 0.0314 0.92208  
## Fibramia_lateralis               0.04555 -0.99896 0.0231 0.80020  
## Fibramia_thermalis               0.66629 -0.74569 0.0970 0.27373  
## Fusigobius_signipinnis           0.99878  0.04934 0.0549 0.91109  
## Gerres_erythrourus               0.98711  0.16003 0.0146 1.00000  
## Gerres_oyena                     0.99183  0.12758 0.0330 0.78222  
## Gladiogobius_ensifer             0.13342 -0.99106 0.0988 0.33167  
## Gnathanodon_speciosus            0.49542  0.86865 0.0130 0.97003  
## Gobiodon_okinawae                0.63016  0.77647 0.0213 0.51249  
## Gymnothorax_pictus               0.93032  0.36674 0.0338 0.33067  
## Halichoeres_chloropterus         0.77484 -0.63216 0.0536 0.87812  
## Halichoeres_leucurus             0.98247  0.18643 0.0862 0.80020  
## Halichoeres_marginatus           0.98711  0.16003 0.0146 1.00000  
## Halichoeres_melanurus            0.18557 -0.98263 0.0488 0.68631  
## Halichoeres_papilionaceus        0.80966  0.58690 0.0555 0.87512  
## Halichoeres_trimaculatus         0.99183  0.12758 0.0330 0.78222  
## Hemiglyphidodon_plagiometopon    0.45124 -0.89240 0.1069 0.71029  
## Hemigymnus_melapterus            0.99678 -0.08023 0.0361 0.93906  
## Heniochus_chrysostomus           0.93765  0.34758 0.0595 0.94106  
## Heniochus_monoceros              0.84717  0.53133 0.0539 0.63936  
## Herklotsichthys_quadrimaculatus  0.98711  0.16003 0.0146 1.00000  
## Hipposcarus_longiceps            0.44740 -0.89434 0.1113 0.52647  
## Istigobius_decoratus             0.98711  0.16003 0.0146 1.00000  
## Koumansetta_rainfordi            0.96121 -0.27583 0.0202 0.69730  
## Kyphosus_cinerascens            -0.21315 -0.97702 0.0174 0.88711  
## Lethrinus_erythropterus          0.88112  0.47288 0.0682 0.90709  
## Lethrinus_harak                  0.83503  0.55020 0.1182 0.79121  
## Lethrinus_obsoletus              0.71133  0.70286 0.0134 0.73327  
## Lethrinus_olivaceus              0.71133  0.70286 0.0134 0.73327  
## Lutjanus_argentimaculatus        0.42547  0.90497 0.1341 0.12188  
## Lutjanus_biguttatus             -0.25335 -0.96737 0.0169 0.84615  
## Lutjanus_bohar                   0.95137  0.30805 0.0401 0.39960  
## Lutjanus_decussatus              0.71133  0.70286 0.0134 0.73327  
## Lutjanus_ehrenbergii             0.78771  0.61604 0.0911 0.90509  
## Lutjanus_fulviflamma             0.87488  0.48435 0.0859 0.33666  
## Lutjanus_fulvus                  0.55443  0.83223 0.3632 0.02398 *
## Lutjanus_gibbus                  0.91822  0.39606 0.0762 0.84416  
## Lutjanus_monostigma              0.89152  0.45297 0.0285 0.87812  
## Lutjanus_russellii               0.66607  0.74589 0.0187 0.26074  
## Macrodontogobius_wilburi         0.75306 -0.65795 0.1443 0.63337  
## Megalops_cyprinoides            -0.17801  0.98403 0.5178 0.10789  
## Meiacanthus_ditrema              0.90503 -0.42535 0.0199 0.82817  
## Meiacanthus_grammistes           0.93543 -0.35350 0.0421 0.67133  
## Monodactylus_argenteus           0.68024  0.73299 0.0316 0.63936  
## Monotaxis_grandoculis           -0.02102 -0.99978 0.0121 0.80819  
## Mugilogobius_cavifrons          -0.60174  0.79870 0.2146 0.36663  
## Mulloidichthys_flavolineatus     0.98711  0.16003 0.0146 1.00000  
## Myripristis_adusta               0.81258  0.58285 0.1256 0.33966  
## Myripristis_sp                   0.81541  0.57889 0.0155 0.49151  
## Myripristis_violacea             0.96121 -0.27583 0.0202 0.69730  
## Naso_brevirostris                0.98495  0.17286 0.0776 0.81219  
## Naso_vlamingii                   0.87638  0.48162 0.0571 0.78921  
## Nectamia_viria                   0.71741  0.69665 0.0193 0.11988  
## Neoglyphidodon_melas            -0.44261 -0.89672 0.2031 0.48951  
## Neoniphon_argenteus              0.77492  0.63206 0.0508 0.49051  
## Neoniphon_opercularis           -0.44261 -0.89672 0.2031 0.48951  
## Neoniphon_sammara                0.95549  0.29501 0.0951 0.92408  
## Neopomacentrus_nemurus           0.25265 -0.96756 0.0635 0.60240  
## Omobranchus_obliquus             0.60663  0.79498 0.0333 0.53846  
## Oplopomops_diacanthus            0.98711  0.16003 0.0146 1.00000  
## Oxycheilinus_celebicus           0.22026 -0.97544 0.0157 0.83916  
## Parapercis_cylindrica            0.98711  0.16003 0.0146 1.00000  
## Parioglossus_formosus           -0.10981  0.99395 0.2528 0.04396 *
## Parioglossus_philippinus         0.75917  0.65090 0.0543 0.63337  
## Parioglossus_sp                  0.98512  0.17185 0.0366 0.60839  
## Parupeneus_barberinus            0.96514  0.26174 0.1647 0.79620  
## Parupeneus_multifasciatus        0.88390 -0.46768 0.2084 0.46653  
## Pentapodus_trivittatus           0.87597 -0.48237 0.2074 0.82817  
## Periophthalmus_argentilineatus   0.99528  0.09709 0.0169 0.34865  
## Pervagor_janthinosoma            0.63016  0.77647 0.0213 0.51249  
## Pervagor_nigrolineatus           0.37832 -0.92567 0.0786 0.36464  
## Petroscirtes_breviceps           0.99810  0.06157 0.1038 0.87313  
## Platax_orbicularis               0.76468  0.64441 0.0303 0.63736  
## Platax_pinnatus                  0.95123  0.30849 0.0155 0.62937  
## Platax_sp                        0.73008  0.68336 0.0125 0.89111  
## Plectorhinchus_albovittatus      0.66607  0.74589 0.0187 0.26074  
## Plectorhinchus_chaetodonoides    0.13342 -0.99106 0.0988 0.33167  
## Plectorhinchus_gibbosus          0.98711  0.16003 0.0146 1.00000  
## Plectropomus_leopardus           0.96121 -0.27583 0.0202 0.69730  
## Pomacanthus_sexstriatus          0.86223  0.50652 0.0349 0.67632  
## Pomacentrus_adelus               0.99528  0.09709 0.0169 0.34865  
## Pomacentrus_amboinensis          0.96121 -0.27583 0.0202 0.69730  
## Pomacentrus_burroughi            0.84161 -0.54008 0.1823 0.42957  
## Pomacentrus_grammorhynchus       0.98711  0.16003 0.0146 1.00000  
## Pomacentrus_nigromanus          -0.15413 -0.98805 0.0249 0.74525  
## Pomacentrus_pavo                 0.96121 -0.27583 0.0202 0.69730  
## Pomacentrus_simsiang             0.92787 -0.37291 0.2872 0.80020  
## Pomacentrus_sp                  -0.32954 -0.94414 0.0638 0.53646  
## Pomacentrus_taeniometopon        0.66607  0.74589 0.0187 0.26074  
## Pseudobalistes_flavimarginatus   0.95774  0.28762 0.1323 0.94705  
## Pseudochromis_fuscus             0.96121 -0.27583 0.0202 0.69730  
## Ptereleotris_brachyptera         1.00000 -0.00178 0.0370 0.59141  
## Ptereleotris_evides              0.96121 -0.27583 0.0202 0.69730  
## Pterocaesio_tile                 0.71133  0.70286 0.0134 0.73327  
## Pterocaesio_trilineata           0.71741  0.69665 0.0193 0.11988  
## Pterois_volitans                 0.95123  0.30849 0.0155 0.62937  
## Rastrelliger_kanagurta           0.31497 -0.94910 0.0673 0.61538  
## Rhabdamia_gracilis               0.83306  0.55318 0.0727 0.40160  
## Rhinecanthus_aculeatus           0.88114  0.47286 0.0607 0.68931  
## Salarias_segmentatus             0.90429  0.42691 0.1687 0.32368  
## Sargocentron_diadema             0.67154  0.74097 0.0425 0.36863  
## Sargocentron_spiniferum          0.81541  0.57889 0.0155 0.49151  
## Saurida_gracilis                 0.63016  0.77647 0.0213 0.51249  
## Scarus_dimidiatus                0.98855  0.15093 0.0850 1.00000  
## Scarus_flavipectoralis           0.90821  0.41852 0.0416 0.74625  
## Scarus_ghobban                   0.98512  0.17185 0.0366 0.60839  
## Scarus_hypselopterus             0.63016  0.77647 0.0213 0.51249  
## Scarus_oviceps                   0.90503 -0.42535 0.0199 0.82817  
## Scarus_psittacus                 0.98114  0.19329 0.1072 0.76424  
## Scarus_quoyi                     0.96121 -0.27583 0.0202 0.69730  
## Scarus_rivulatus                 0.25880 -0.96593 0.0856 0.32068  
## Scatophagus_argus                0.74787  0.66385 0.0129 0.86014  
## Scolopsis_ciliata                0.73160 -0.68174 0.1706 0.61838  
## Scolopsis_lineata                0.91608  0.40099 0.0314 0.92208  
## Scolopsis_margaritifera          0.35816 -0.93366 0.0807 0.69231  
## Scolopsis_trilineata             0.74721  0.66459 0.0530 0.25674  
## Siganus_doliatus                 0.36614 -0.93056 0.0885 0.48551  
## Siganus_fuscescens               0.77735  0.62907 0.0530 0.93007  
## Siganus_lineatus                 0.58175  0.81337 0.2995 0.01998 *
## Siganus_puellus                  0.35553 -0.93466 0.0998 0.29970  
## Siganus_punctatissimus           0.96121 -0.27583 0.0202 0.69730  
## Siganus_punctatus                0.96121 -0.27583 0.0202 0.69730  
## Signigobius_biocellatus          0.63016  0.77647 0.0213 0.51249  
## Silhouettea_sp                   0.20804  0.97812 0.0024 1.00000  
## Sphaeramia_nematoptera           0.71648 -0.69761 0.1362 0.88611  
## Sphaeramia_orbicularis           0.63963 -0.76869 0.1605 0.20779  
## Sphyraena_barracuda              0.83901  0.54412 0.0921 0.86014  
## Sphyraena_obtusata               0.80339  0.59545 0.0117 1.00000  
## Sphyraena_qenie                  0.81541  0.57889 0.0155 0.49151  
## Stegastes_nigricans              0.98711  0.16003 0.0146 1.00000  
## Stegastes_punctatus              0.80694  0.59063 0.0365 0.87013  
## Stethojulis_strigiventer         0.95267  0.30400 0.0516 0.76823  
## Strongylura_incisa               0.71192  0.70226 0.0382 0.55045  
## Synodus_variegatus               0.31497 -0.94910 0.0673 0.61538  
## Taeniamia_zosterophora           0.35696 -0.93412 0.0896 0.45754  
## Taeniurops_meyeni                0.71133  0.70286 0.0134 0.73327  
## Toxotes_jaculatrix               0.87121  0.49091 0.1170 0.85215  
## Tylosurus_punctulatus            0.88859  0.45870 0.0283 0.87912  
## Upeneus_taeniopterus             0.81541  0.57889 0.0155 0.49151  
## Valenciennea_muralis             0.83345  0.55260 0.0488 0.67233  
## Valenciennea_parva               0.95123  0.30849 0.0155 0.62937  
## Valenciennea_randalli            0.95123  0.30849 0.0155 0.62937  
## Zanclus_cornutus                 0.99878  0.04934 0.0549 0.91109  
## Zebrasoma_scopas                 0.96121 -0.27583 0.0202 0.69730  
## Zebrasoma_velifer                0.78688 -0.61711 0.1816 0.72228  
## Zenarchopterus_dispar            0.98230 -0.18729 0.2631 0.97103  
## Zenarchopterus_gilli             0.99844 -0.05578 0.0867 0.93207  
## Zoramia_leptacanthus             0.98711  0.16003 0.0146 1.00000  
## Zoramia_viridiventer             0.51118 -0.85947 0.0923 0.31169  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
fds_efp <- p.adjust.envfit(fds_ef)
## Adjustment of significance by bonferroni method
fds_efp
## 
## ***VECTORS
## 
##                                    NMDS1    NMDS2     r2 Pr(>r)
## Abudefduf_lorenzi               -0.23604 -0.97174 0.0149      1
## Abudefduf_septemfasciatus        0.99528  0.09709 0.0169      1
## Abudefduf_sexfasciatus          -0.23604 -0.97174 0.0149      1
## Acanthurus_lineatus              0.63016  0.77647 0.0213      1
## Acanthurus_nigricauda            0.97616  0.21705 0.0556      1
## Acanthurus_sp                    0.90503 -0.42535 0.0199      1
## Acanthurus_xanthopterus          0.75012  0.66130 0.1882      1
## Acentrogobius_janthinopterus    -0.83821  0.54535 0.3818      1
## Amblyeleotris_gymnocephala       0.95123  0.30849 0.0155      1
## Amblyglyphidodon_curacao         0.60738 -0.79441 0.0382      1
## Amblygobius_buanensis            0.85471  0.51911 0.3321      1
## Amblygobius_decussatus           0.25880 -0.96593 0.0856      1
## Amblygobius_esakiae              0.90503 -0.42535 0.0199      1
## Amblygobius_linki                0.66607  0.74589 0.0187      1
## Amblygobius_phalaena             0.97143  0.23734 0.0315      1
## Amphiprion_clarkii               0.96121 -0.27583 0.0202      1
## Ancistrogobius_dipus             0.71133  0.70286 0.0134      1
## Apogonichthyoides_melas          0.71133  0.70286 0.0134      1
## Arcygobius_baliurus              0.81541  0.57889 0.0155      1
## Arothron_reticularis             0.74787  0.66385 0.0129      1
## Asterropteryx_semipunctata       0.99445  0.10516 0.0539      1
## Asterropteryx_sp                 0.66607  0.74589 0.0187      1
## Atherinomorus_lacunosus          0.97434  0.22506 0.0160      1
## Atule_mate                       0.63016  0.77647 0.0213      1
## Balistoides_viridescens          0.89130  0.45342 0.1281      1
## Bolbometopon_muricatum           0.36614 -0.93056 0.0885      1
## Caesio_caerulaurea               0.71464  0.69950 0.0341      1
## Caesio_cuning                    0.48562 -0.87417 0.1028      1
## Caesio_teres                     0.95123  0.30849 0.0155      1
## Cantherhines_dumerilii           0.96121 -0.27583 0.0202      1
## Canthigaster_bennetti            0.96121 -0.27583 0.0202      1
## Canthigaster_solandri            0.99528  0.09709 0.0169      1
## Caranx_ignobilis                 0.98711  0.16003 0.0146      1
## Caranx_melampygus                0.38822 -0.92157 0.0053      1
## Caranx_papuensis                 0.95123  0.30849 0.0155      1
## Caranx_sexfasciatus              0.80521  0.59299 0.0939      1
## Cephalopholis_argus             -0.44261 -0.89672 0.2031      1
## Cephalopholis_boenak             0.93543 -0.35350 0.0421      1
## Chaetodon_auriga                 0.96905 -0.24688 0.2867      1
## Chaetodon_bennetti               0.90821  0.41852 0.0416      1
## Chaetodon_ephippium              0.89898 -0.43800 0.2449      1
## Chaetodon_kleinii                0.92236  0.38633 0.0607      1
## Chaetodon_lunula                 0.87881  0.47717 0.1594      1
## Chaetodon_lunulatus              0.75306 -0.65795 0.1443      1
## Chaetodon_melannotus             0.71741  0.69665 0.0193      1
## Chaetodon_ocellicaudus           0.98711  0.16003 0.0146      1
## Chaetodon_octofasciatus          0.93543 -0.35350 0.0421      1
## Chaetodon_rafflesii              0.98855  0.15093 0.0850      1
## Chaetodon_semeion                0.95137  0.30805 0.0401      1
## Chaetodon_trifascialis           0.96121 -0.27583 0.0202      1
## Chaetodon_ulietensis             0.51780 -0.85550 0.1000      1
## Chaetodon_vagabundus             0.97243 -0.23319 0.2893      1
## Chaetodontoplus_poliourus        0.96121 -0.27583 0.0202      1
## Cheilinus_fasciatus              0.98894  0.14830 0.0648      1
## Cheilinus_trilobatus             0.63016  0.77647 0.0213      1
## Cheilinus_undulatus              0.25413 -0.96717 0.0745      1
## Cheilodipterus_artus             0.21333 -0.97698 0.0100      1
## Cheilodipterus_isostigma         0.27334 -0.96192 0.0694      1
## Cheilodipterus_quinquelineatus   0.90937 -0.41598 0.2468      1
## Cheilodipterus_singapurensis     0.75461  0.65618 0.0320      1
## Chlorurus_bleekeri               0.51454 -0.85747 0.1093      1
## Chlorurus_microrhinos            0.99678 -0.08023 0.0361      1
## Chlorurus_spilurus               0.98855  0.15093 0.0850      1
## Choerodon_anchorago              0.99634 -0.08545 0.3920      1
## Chromis_viridis                  0.42128 -0.90693 0.0765      1
## Chrysiptera_biocellata           0.93032  0.36674 0.0338      1
## Chrysiptera_oxycephala           0.35038 -0.93661 0.0784      1
## Corythoichthys_ocellatus         0.96121 -0.27583 0.0202      1
## Cryptocentrus_caeruleomaculatus  0.67552 -0.73734 0.0692      1
## Cryptocentrus_cyanospilotus      0.20804  0.97812 0.0024      1
## Cryptocentrus_leptocephalus      0.91608  0.40099 0.0314      1
## Cryptocentrus_strigilliceps      0.51009 -0.86012 0.0988      1
## Ctenochaetus_striatus            0.16567 -0.98618 0.0700      1
## Ctenogobiops_pomastictus         0.71133  0.70286 0.0134      1
## Cymbacephalus_beauforti          0.98711  0.16003 0.0146      1
## Dascyllus_aruanus                0.59232 -0.80570 0.0848      1
## Dascyllus_trimaculatus           0.96121 -0.27583 0.0202      1
## Diplogrammus_goramensis          0.87290  0.48789 0.0290      1
## Diproctacanthus_xanthurus        0.90821  0.41852 0.0416      1
## Dischistodus_chrysopoecilus      0.88448  0.46658 0.0280      1
## Dischistodus_perspicillatus      0.80273 -0.59634 0.1279      1
## Doboatherina_duodecimalis        0.28051 -0.95985 0.1295      1
## Eleotris_fusca                  -0.30762  0.95151 0.3599      1
## Epibulus_brevis                  0.60942 -0.79285 0.1286      1
## Epinephelus_coeruleopunctatus    0.73539  0.67765 0.0358      1
## Epinephelus_merra                0.53712 -0.84351 0.1002      1
## Epinephelus_sp                   0.73008  0.68336 0.0125      1
## Eviota_atriventris               0.96020  0.27931 0.0527      1
## Eviota_bifasciata                0.82173 -0.56988 0.1761      1
## Eviota_fallax                    0.73397 -0.67919 0.1533      1
## Eviota_lachdeberei               0.85291  0.52206 0.0721      1
## Eviota_maculosa                  0.13342 -0.99106 0.0988      1
## Eviota_sigillata                 0.83462  0.55083 0.0361      1
## Eviota_sp                        0.66607  0.74589 0.0187      1
## Eviota_storthynx                 0.84717  0.53133 0.0539      1
## Exyrias_belissimus               0.91233 -0.40947 0.1514      1
## Exyrias_puntang                 -0.04985  0.99876 0.2868      1
## Favonigobius_reichei             0.91608  0.40099 0.0314      1
## Fibramia_lateralis               0.04555 -0.99896 0.0231      1
## Fibramia_thermalis               0.66629 -0.74569 0.0970      1
## Fusigobius_signipinnis           0.99878  0.04934 0.0549      1
## Gerres_erythrourus               0.98711  0.16003 0.0146      1
## Gerres_oyena                     0.99183  0.12758 0.0330      1
## Gladiogobius_ensifer             0.13342 -0.99106 0.0988      1
## Gnathanodon_speciosus            0.49542  0.86865 0.0130      1
## Gobiodon_okinawae                0.63016  0.77647 0.0213      1
## Gymnothorax_pictus               0.93032  0.36674 0.0338      1
## Halichoeres_chloropterus         0.77484 -0.63216 0.0536      1
## Halichoeres_leucurus             0.98247  0.18643 0.0862      1
## Halichoeres_marginatus           0.98711  0.16003 0.0146      1
## Halichoeres_melanurus            0.18557 -0.98263 0.0488      1
## Halichoeres_papilionaceus        0.80966  0.58690 0.0555      1
## Halichoeres_trimaculatus         0.99183  0.12758 0.0330      1
## Hemiglyphidodon_plagiometopon    0.45124 -0.89240 0.1069      1
## Hemigymnus_melapterus            0.99678 -0.08023 0.0361      1
## Heniochus_chrysostomus           0.93765  0.34758 0.0595      1
## Heniochus_monoceros              0.84717  0.53133 0.0539      1
## Herklotsichthys_quadrimaculatus  0.98711  0.16003 0.0146      1
## Hipposcarus_longiceps            0.44740 -0.89434 0.1113      1
## Istigobius_decoratus             0.98711  0.16003 0.0146      1
## Koumansetta_rainfordi            0.96121 -0.27583 0.0202      1
## Kyphosus_cinerascens            -0.21315 -0.97702 0.0174      1
## Lethrinus_erythropterus          0.88112  0.47288 0.0682      1
## Lethrinus_harak                  0.83503  0.55020 0.1182      1
## Lethrinus_obsoletus              0.71133  0.70286 0.0134      1
## Lethrinus_olivaceus              0.71133  0.70286 0.0134      1
## Lutjanus_argentimaculatus        0.42547  0.90497 0.1341      1
## Lutjanus_biguttatus             -0.25335 -0.96737 0.0169      1
## Lutjanus_bohar                   0.95137  0.30805 0.0401      1
## Lutjanus_decussatus              0.71133  0.70286 0.0134      1
## Lutjanus_ehrenbergii             0.78771  0.61604 0.0911      1
## Lutjanus_fulviflamma             0.87488  0.48435 0.0859      1
## Lutjanus_fulvus                  0.55443  0.83223 0.3632      1
## Lutjanus_gibbus                  0.91822  0.39606 0.0762      1
## Lutjanus_monostigma              0.89152  0.45297 0.0285      1
## Lutjanus_russellii               0.66607  0.74589 0.0187      1
## Macrodontogobius_wilburi         0.75306 -0.65795 0.1443      1
## Megalops_cyprinoides            -0.17801  0.98403 0.5178      1
## Meiacanthus_ditrema              0.90503 -0.42535 0.0199      1
## Meiacanthus_grammistes           0.93543 -0.35350 0.0421      1
## Monodactylus_argenteus           0.68024  0.73299 0.0316      1
## Monotaxis_grandoculis           -0.02102 -0.99978 0.0121      1
## Mugilogobius_cavifrons          -0.60174  0.79870 0.2146      1
## Mulloidichthys_flavolineatus     0.98711  0.16003 0.0146      1
## Myripristis_adusta               0.81258  0.58285 0.1256      1
## Myripristis_sp                   0.81541  0.57889 0.0155      1
## Myripristis_violacea             0.96121 -0.27583 0.0202      1
## Naso_brevirostris                0.98495  0.17286 0.0776      1
## Naso_vlamingii                   0.87638  0.48162 0.0571      1
## Nectamia_viria                   0.71741  0.69665 0.0193      1
## Neoglyphidodon_melas            -0.44261 -0.89672 0.2031      1
## Neoniphon_argenteus              0.77492  0.63206 0.0508      1
## Neoniphon_opercularis           -0.44261 -0.89672 0.2031      1
## Neoniphon_sammara                0.95549  0.29501 0.0951      1
## Neopomacentrus_nemurus           0.25265 -0.96756 0.0635      1
## Omobranchus_obliquus             0.60663  0.79498 0.0333      1
## Oplopomops_diacanthus            0.98711  0.16003 0.0146      1
## Oxycheilinus_celebicus           0.22026 -0.97544 0.0157      1
## Parapercis_cylindrica            0.98711  0.16003 0.0146      1
## Parioglossus_formosus           -0.10981  0.99395 0.2528      1
## Parioglossus_philippinus         0.75917  0.65090 0.0543      1
## Parioglossus_sp                  0.98512  0.17185 0.0366      1
## Parupeneus_barberinus            0.96514  0.26174 0.1647      1
## Parupeneus_multifasciatus        0.88390 -0.46768 0.2084      1
## Pentapodus_trivittatus           0.87597 -0.48237 0.2074      1
## Periophthalmus_argentilineatus   0.99528  0.09709 0.0169      1
## Pervagor_janthinosoma            0.63016  0.77647 0.0213      1
## Pervagor_nigrolineatus           0.37832 -0.92567 0.0786      1
## Petroscirtes_breviceps           0.99810  0.06157 0.1038      1
## Platax_orbicularis               0.76468  0.64441 0.0303      1
## Platax_pinnatus                  0.95123  0.30849 0.0155      1
## Platax_sp                        0.73008  0.68336 0.0125      1
## Plectorhinchus_albovittatus      0.66607  0.74589 0.0187      1
## Plectorhinchus_chaetodonoides    0.13342 -0.99106 0.0988      1
## Plectorhinchus_gibbosus          0.98711  0.16003 0.0146      1
## Plectropomus_leopardus           0.96121 -0.27583 0.0202      1
## Pomacanthus_sexstriatus          0.86223  0.50652 0.0349      1
## Pomacentrus_adelus               0.99528  0.09709 0.0169      1
## Pomacentrus_amboinensis          0.96121 -0.27583 0.0202      1
## Pomacentrus_burroughi            0.84161 -0.54008 0.1823      1
## Pomacentrus_grammorhynchus       0.98711  0.16003 0.0146      1
## Pomacentrus_nigromanus          -0.15413 -0.98805 0.0249      1
## Pomacentrus_pavo                 0.96121 -0.27583 0.0202      1
## Pomacentrus_simsiang             0.92787 -0.37291 0.2872      1
## Pomacentrus_sp                  -0.32954 -0.94414 0.0638      1
## Pomacentrus_taeniometopon        0.66607  0.74589 0.0187      1
## Pseudobalistes_flavimarginatus   0.95774  0.28762 0.1323      1
## Pseudochromis_fuscus             0.96121 -0.27583 0.0202      1
## Ptereleotris_brachyptera         1.00000 -0.00178 0.0370      1
## Ptereleotris_evides              0.96121 -0.27583 0.0202      1
## Pterocaesio_tile                 0.71133  0.70286 0.0134      1
## Pterocaesio_trilineata           0.71741  0.69665 0.0193      1
## Pterois_volitans                 0.95123  0.30849 0.0155      1
## Rastrelliger_kanagurta           0.31497 -0.94910 0.0673      1
## Rhabdamia_gracilis               0.83306  0.55318 0.0727      1
## Rhinecanthus_aculeatus           0.88114  0.47286 0.0607      1
## Salarias_segmentatus             0.90429  0.42691 0.1687      1
## Sargocentron_diadema             0.67154  0.74097 0.0425      1
## Sargocentron_spiniferum          0.81541  0.57889 0.0155      1
## Saurida_gracilis                 0.63016  0.77647 0.0213      1
## Scarus_dimidiatus                0.98855  0.15093 0.0850      1
## Scarus_flavipectoralis           0.90821  0.41852 0.0416      1
## Scarus_ghobban                   0.98512  0.17185 0.0366      1
## Scarus_hypselopterus             0.63016  0.77647 0.0213      1
## Scarus_oviceps                   0.90503 -0.42535 0.0199      1
## Scarus_psittacus                 0.98114  0.19329 0.1072      1
## Scarus_quoyi                     0.96121 -0.27583 0.0202      1
## Scarus_rivulatus                 0.25880 -0.96593 0.0856      1
## Scatophagus_argus                0.74787  0.66385 0.0129      1
## Scolopsis_ciliata                0.73160 -0.68174 0.1706      1
## Scolopsis_lineata                0.91608  0.40099 0.0314      1
## Scolopsis_margaritifera          0.35816 -0.93366 0.0807      1
## Scolopsis_trilineata             0.74721  0.66459 0.0530      1
## Siganus_doliatus                 0.36614 -0.93056 0.0885      1
## Siganus_fuscescens               0.77735  0.62907 0.0530      1
## Siganus_lineatus                 0.58175  0.81337 0.2995      1
## Siganus_puellus                  0.35553 -0.93466 0.0998      1
## Siganus_punctatissimus           0.96121 -0.27583 0.0202      1
## Siganus_punctatus                0.96121 -0.27583 0.0202      1
## Signigobius_biocellatus          0.63016  0.77647 0.0213      1
## Silhouettea_sp                   0.20804  0.97812 0.0024      1
## Sphaeramia_nematoptera           0.71648 -0.69761 0.1362      1
## Sphaeramia_orbicularis           0.63963 -0.76869 0.1605      1
## Sphyraena_barracuda              0.83901  0.54412 0.0921      1
## Sphyraena_obtusata               0.80339  0.59545 0.0117      1
## Sphyraena_qenie                  0.81541  0.57889 0.0155      1
## Stegastes_nigricans              0.98711  0.16003 0.0146      1
## Stegastes_punctatus              0.80694  0.59063 0.0365      1
## Stethojulis_strigiventer         0.95267  0.30400 0.0516      1
## Strongylura_incisa               0.71192  0.70226 0.0382      1
## Synodus_variegatus               0.31497 -0.94910 0.0673      1
## Taeniamia_zosterophora           0.35696 -0.93412 0.0896      1
## Taeniurops_meyeni                0.71133  0.70286 0.0134      1
## Toxotes_jaculatrix               0.87121  0.49091 0.1170      1
## Tylosurus_punctulatus            0.88859  0.45870 0.0283      1
## Upeneus_taeniopterus             0.81541  0.57889 0.0155      1
## Valenciennea_muralis             0.83345  0.55260 0.0488      1
## Valenciennea_parva               0.95123  0.30849 0.0155      1
## Valenciennea_randalli            0.95123  0.30849 0.0155      1
## Zanclus_cornutus                 0.99878  0.04934 0.0549      1
## Zebrasoma_scopas                 0.96121 -0.27583 0.0202      1
## Zebrasoma_velifer                0.78688 -0.61711 0.1816      1
## Zenarchopterus_dispar            0.98230 -0.18729 0.2631      1
## Zenarchopterus_gilli             0.99844 -0.05578 0.0867      1
## Zoramia_leptacanthus             0.98711  0.16003 0.0146      1
## Zoramia_viridiventer             0.51118 -0.85947 0.0923      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000

Trait mantel tests

We used mantel tests to determine significance between the trait and environmental distance matrices.

### Environmental
# All sites
enve_dist <- dist(scaled_env[-c(9,16,18,20),c(2)], method = "euclidean")
fdea_mant <- mantel(fde_dist, enve_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
fdea_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fde_dist, ydis = enve_dist, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.8057 
##       Significance: 0.016 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.695 0.746 0.782 0.820 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
envems_dist <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2)], method = "euclidean")
fdems_mant <- mantel(fdems_dist, envems_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
fdems_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdems_dist, ydis = envems_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.8214 
##       Significance: 0.006 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.692 0.740 0.779 0.809 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
enveom_dist <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(2:4)], method = "euclidean")
fdeom_mant <- mantel(fdeom_dist, enveom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
fdeom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdeom_dist, ydis = enveom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15,          19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1356 
##       Significance: 0.15 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.187 0.251 0.315 0.413 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
enveso_dist <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2)], method = "euclidean")
fdeso_mant <- mantel(fdeso_dist, enveso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
fdeso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdeso_dist, ydis = enveso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17,          19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6976 
##       Significance: 0.018 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.462 0.555 0.643 0.715 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes
envs_dist <- dist(scaled_env[c(1:2,4,5,12,17,21:22),c(1:15)], method = "euclidean")
fds_mant <- mantel(fds_dist, envs_dist, method = "spearman", permutations = 999, na.rm = TRUE)
fds_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fds_dist, ydis = envs_dist, method = "spearman",      permutations = 999, na.rm = TRUE) 
## 
## Mantel statistic r: 0.03996 
##       Significance: 0.396 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.248 0.331 0.387 0.475 
## Permutation: free
## Number of permutations: 999
### Biogeographic
# All sites
envb_dist_la <- dist(scaled_env[-c(8,20),c(15)], method = "euclidean")
fdba_mant_la <- mantel(fdb_dist, envb_dist_la, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
fdba_mant_la
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdb_dist, ydis = envb_dist_la, method = "spearman",      permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1117 
##       Significance: 0.008 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0439 0.0696 0.0907 0.1083 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes 
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:15)], method = "euclidean")
fdbms_mant <- mantel(fdbms_dist, envbms_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
fdbms_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdbms_dist, ydis = envbms_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 10, 12:15, 17, 21:23),          19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2809 
##       Significance: 0.289 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.397 0.457 0.502 0.554 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(5:15)], method = "euclidean")
fdbom_mant <- mantel(fdbom_dist, envbom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
fdbom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdbom_dist, ydis = envbom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:7, 9:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1645 
##       Significance: 0.598 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.472 0.570 0.617 0.661 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:15)], method = "euclidean")
fdbso_mant <- mantel(fdbso_dist, envbso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
fdbso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = fdbso_dist, ydis = envbso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1656 
##       Significance: 0.328 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.237 0.274 0.293 0.324 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999

Plot trait NMDS and envfit results

Includes a plot of correlated environmental variables

fd_NMDS_data.scores <- as.data.frame(scores(fd_NMDS))
fd_NMDS_data.scores$Stratification <- env[-20,19]
fd_NMDS_data.scores$Lakes <- env[-20,1]
fd_NMDS_data.scores$Stratification <- factor(fd_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))

fde_ef_coord_cont <- as.data.frame(scores(fde_ef, "vectors")) * ordiArrowMul(fde_ef)
fde_row_names <- c("S")
# Assign the new row names to the data frame
fde_ef_coord_cont <- data.frame(row.names = fde_row_names, fde_ef_coord_cont)

# fdb_ef_coord_cont <- as.data.frame(scores(fdb_ef, "vectors")) * ordiArrowMul(fdb_ef)
# fdb_row_names <- c("minD")
# # Assign the new row names to the data frame
# fdb_ef_coord_cont <- data.frame(row.names = fdb_row_names, fdb_ef_coord_cont)

fd_ef_plot <- ggplot(data = fd_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification), level = 0.50) +
  geom_point(data = fd_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) + 
  geom_text_repel(data = fd_NMDS_data.scores, label = fd_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = fde_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD661D") +
  geom_text(data = fde_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "#CD661D", label = row.names(fde_ef_coord_cont), size = 7) + 
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
  #              data = fdb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#698B22") +
  # geom_text(data = fdb_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
  #           color = "#698B22", label = row.names(fdb_ef_coord_cont), size = 7) + 
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = 0.19, y = -0.3, size = 6,
  #          label = paste("Stress: ", round(fd_NMDS$stress, digits = 2))) +
  labs(color = "Stratification", tag = "A")
fd_ef_plot <- fd_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
fd_ef_plot
## Warning: ggrepel: 14 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/fd_ef_plot.png", fd_ef_plot, width = 8.25, height = 4.13, units = "in")
## Warning: ggrepel: 14 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps

Boxplot of trait intradissimilarity heterogeneity

The dissimilarity between sites that share the same stratification.

fd_bd_dist <- stratification_fd_bd$distances
fd_bd_dist <- as.data.frame(fd_bd_dist)
fd_bd_dist$X <- row.names(fd_bd_dist)
fd_bd_dist_env <- merge(fd_bd_dist, env[-20,], by = "X", sort = F)

fd_bd_dist_env_plot <- ggplot(fd_bd_dist_env, aes(x = Stratification, y = fd_bd_dist, 
                                                  color = Stratification, fill = Stratification)) +
  geom_violin(alpha = 0.75, draw_quantiles = c(0.25, 0.5, 0.75)) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  scale_fill_viridis(alpha = 0.1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  guides(fill = "none", color = "none") +
  geom_jitter(shape = 21,
            size = 4,
            alpha = 0.75,
            width = 0.1) +
  theme_bw() +
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
    plot.background = element_blank(),
    panel.grid.major = element_blank(),
    panel.grid.minor = element_blank(),
    panel.border = element_blank(), axis.text = element_text(size = 22, color = "black"),
    axis.line = element_line(color = "black")) +
  ylab("Distance to Centroid") +
  labs(color = "Stratification", tag = "A")
fd_bd_dist_env_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/fd_bd_dist_env_plot.png", fd_bd_dist_env_plot, width = 8.25, height = 4.13, units = "in")

Phylogeny dissimilarity distances

We use unifrac to calculate distances in the phylogeny.

### Regular
pd_dist <- unifrac(presabs_lake[-20,], stree)
# Mixed and stratified lakes
pdms_dist <- unifrac(presabs_lake[c(1:6,8,10,12:15,17,21:23),], stree)
# Ocean sites and mixed lakes
pdom_dist <- unifrac(presabs_lake[c(3,6:11,13:16,18:19,23),], stree)
# Stratified lakes and ocean sites
pdso_dist <- unifrac(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], stree)
# Stratified lakes
pds_dist <- unifrac(presabs_lake[c(1:2,4,5,12,17,21:22),], stree)

### Environmental
pde_dist <- unifrac(presabs_lake[-c(9,16,18,20),], etree)
# Mixed and stratified lakes
pdems_dist <- unifrac(presabs_lake[c(1:6,8,10,12:15,17,21:23),], etree)
# Ocean sites and mixed lakes
pdeom_dist <- unifrac(presabs_lake[c(3,6:8,10:11,13:15,19,23),], etree)
# Stratified lakes and ocean sites
pdeso_dist <- unifrac(presabs_lake[c(1:2,4,5,7,11:12,17,19,21:22),], etree)


### Biogeographic
pdb_dist <- unifrac(presabs_lake[-c(8,20),], btree)
# Mixed and stratified lakes
pdbms_dist <- unifrac(presabs_lake[c(1:6,10,12:15,17,21:23),], btree)
# Ocean sites and mixed lakes
pdbom_dist <- unifrac(presabs_lake[c(3,6:7,9:11,13:16,18:19,23),], btree)
# Stratified lakes and ocean sites
pdbso_dist <- unifrac(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], btree)

Phylogeny NMDS

To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.

### Regular
pd_NMDS <- metaMDS(pd_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08003946 
## Run 1 stress 0.080207 
## ... Procrustes: rmse 0.01864101  max resid 0.06472255 
## Run 2 stress 0.08020699 
## ... Procrustes: rmse 0.01862772  max resid 0.06464475 
## Run 3 stress 0.07977106 
## ... New best solution
## ... Procrustes: rmse 0.008968747  max resid 0.03274471 
## Run 4 stress 0.08080953 
## Run 5 stress 0.0941542 
## Run 6 stress 0.08080953 
## Run 7 stress 0.09254295 
## Run 8 stress 0.08003946 
## ... Procrustes: rmse 0.008968262  max resid 0.03268164 
## Run 9 stress 0.09330291 
## Run 10 stress 0.080207 
## ... Procrustes: rmse 0.01510078  max resid 0.06265161 
## Run 11 stress 0.09219216 
## Run 12 stress 0.1109386 
## Run 13 stress 0.08020699 
## ... Procrustes: rmse 0.01507881  max resid 0.0625389 
## Run 14 stress 0.08003946 
## ... Procrustes: rmse 0.008968367  max resid 0.0326835 
## Run 15 stress 0.08080962 
## Run 16 stress 0.07977107 
## ... Procrustes: rmse 4.886407e-05  max resid 0.0001653153 
## ... Similar to previous best
## Run 17 stress 0.08020699 
## ... Procrustes: rmse 0.01508662  max resid 0.06257926 
## Run 18 stress 0.08003946 
## ... Procrustes: rmse 0.008967691  max resid 0.03267986 
## Run 19 stress 0.08080954 
## Run 20 stress 0.08020699 
## ... Procrustes: rmse 0.01508849  max resid 0.06258905 
## Run 21 stress 0.08020703 
## ... Procrustes: rmse 0.01512965  max resid 0.06280002 
## Run 22 stress 0.09317099 
## Run 23 stress 0.09415411 
## Run 24 stress 0.09280579 
## Run 25 stress 0.09443024 
## Run 26 stress 0.08003947 
## ... Procrustes: rmse 0.00896664  max resid 0.032678 
## Run 27 stress 0.09219221 
## Run 28 stress 0.07977108 
## ... Procrustes: rmse 1.750468e-05  max resid 3.312944e-05 
## ... Similar to previous best
## Run 29 stress 0.09248711 
## Run 30 stress 0.07977106 
## ... Procrustes: rmse 3.271619e-05  max resid 0.0001254041 
## ... Similar to previous best
## Run 31 stress 0.09415419 
## Run 32 stress 0.1050389 
## Run 33 stress 0.08003946 
## ... Procrustes: rmse 0.008967113  max resid 0.03268439 
## Run 34 stress 0.0931708 
## Run 35 stress 0.080207 
## ... Procrustes: rmse 0.01509967  max resid 0.0626545 
## Run 36 stress 0.1050391 
## Run 37 stress 0.08080963 
## Run 38 stress 0.08003952 
## ... Procrustes: rmse 0.008967197  max resid 0.03267909 
## Run 39 stress 0.08080958 
## Run 40 stress 0.08080951 
## Run 41 stress 0.08020699 
## ... Procrustes: rmse 0.01509575  max resid 0.06262582 
## Run 42 stress 0.07977105 
## ... New best solution
## ... Procrustes: rmse 8.567214e-06  max resid 2.115262e-05 
## ... Similar to previous best
## Run 43 stress 0.09254291 
## Run 44 stress 0.08080953 
## Run 45 stress 0.08080954 
## Run 46 stress 0.105413 
## Run 47 stress 0.08020699 
## ... Procrustes: rmse 0.0150742  max resid 0.06251318 
## Run 48 stress 0.08003946 
## ... Procrustes: rmse 0.008968311  max resid 0.0326817 
## Run 49 stress 0.09248698 
## Run 50 stress 0.09250233 
## Run 51 stress 0.08020699 
## ... Procrustes: rmse 0.01508805  max resid 0.06258526 
## Run 52 stress 0.07977107 
## ... Procrustes: rmse 4.301136e-05  max resid 0.0001524536 
## ... Similar to previous best
## Run 53 stress 0.08003947 
## ... Procrustes: rmse 0.008968821  max resid 0.03268425 
## Run 54 stress 0.08080951 
## Run 55 stress 0.07977106 
## ... Procrustes: rmse 2.037219e-05  max resid 4.773976e-05 
## ... Similar to previous best
## Run 56 stress 0.09326309 
## Run 57 stress 0.09219218 
## Run 58 stress 0.09358442 
## Run 59 stress 0.08080952 
## Run 60 stress 0.0935843 
## Run 61 stress 0.09415415 
## Run 62 stress 0.09358426 
## Run 63 stress 0.08003947 
## ... Procrustes: rmse 0.008968787  max resid 0.03268365 
## Run 64 stress 0.080207 
## ... Procrustes: rmse 0.01509926  max resid 0.06264471 
## Run 65 stress 0.09254292 
## Run 66 stress 0.08020701 
## ... Procrustes: rmse 0.01511545  max resid 0.06273289 
## Run 67 stress 0.07977106 
## ... Procrustes: rmse 1.350475e-05  max resid 4.779259e-05 
## ... Similar to previous best
## Run 68 stress 0.080207 
## ... Procrustes: rmse 0.01510138  max resid 0.06265582 
## Run 69 stress 0.07977107 
## ... Procrustes: rmse 4.276061e-05  max resid 0.0001007637 
## ... Similar to previous best
## Run 70 stress 0.09317079 
## Run 71 stress 0.09443015 
## Run 72 stress 0.08080956 
## Run 73 stress 0.08003946 
## ... Procrustes: rmse 0.00896838  max resid 0.03268238 
## Run 74 stress 0.08020699 
## ... Procrustes: rmse 0.01508821  max resid 0.06258516 
## Run 75 stress 0.08020699 
## ... Procrustes: rmse 0.01508046  max resid 0.06254596 
## Run 76 stress 0.07977106 
## ... Procrustes: rmse 1.433603e-05  max resid 5.702467e-05 
## ... Similar to previous best
## Run 77 stress 0.08020699 
## ... Procrustes: rmse 0.01509451  max resid 0.06261901 
## Run 78 stress 0.08080961 
## Run 79 stress 0.080207 
## ... Procrustes: rmse 0.01509435  max resid 0.06261803 
## Run 80 stress 0.08003946 
## ... Procrustes: rmse 0.008968386  max resid 0.0326829 
## Run 81 stress 0.09415416 
## Run 82 stress 0.08080953 
## Run 83 stress 0.09280575 
## Run 84 stress 0.09358427 
## Run 85 stress 0.08003946 
## ... Procrustes: rmse 0.008968391  max resid 0.03268232 
## Run 86 stress 0.07977105 
## ... New best solution
## ... Procrustes: rmse 5.269817e-06  max resid 1.770026e-05 
## ... Similar to previous best
## Run 87 stress 0.09219215 
## Run 88 stress 0.09254299 
## Run 89 stress 0.09219212 
## Run 90 stress 0.09225276 
## Run 91 stress 0.08020699 
## ... Procrustes: rmse 0.01508086  max resid 0.06254463 
## Run 92 stress 0.09392287 
## Run 93 stress 0.1051056 
## Run 94 stress 0.09423228 
## Run 95 stress 0.09392285 
## Run 96 stress 0.08080962 
## Run 97 stress 0.09443011 
## Run 98 stress 0.07977106 
## ... Procrustes: rmse 4.699575e-06  max resid 1.301829e-05 
## ... Similar to previous best
## Run 99 stress 0.080207 
## ... Procrustes: rmse 0.01505871  max resid 0.0624346 
## Run 100 stress 0.09423224 
## Run 101 stress 0.08080954 
## Run 102 stress 0.07977108 
## ... Procrustes: rmse 6.13499e-05  max resid 0.0001708798 
## ... Similar to previous best
## Run 103 stress 0.08080952 
## Run 104 stress 0.08003948 
## ... Procrustes: rmse 0.008969167  max resid 0.03268298 
## Run 105 stress 0.09254293 
## Run 106 stress 0.08020699 
## ... Procrustes: rmse 0.0150962  max resid 0.06262298 
## Run 107 stress 0.08020699 
## ... Procrustes: rmse 0.0150866  max resid 0.0625745 
## Run 108 stress 0.09392285 
## Run 109 stress 0.08080957 
## Run 110 stress 0.09326304 
## Run 111 stress 0.09317083 
## Run 112 stress 0.08020699 
## ... Procrustes: rmse 0.01509379  max resid 0.06261056 
## Run 113 stress 0.08020699 
## ... Procrustes: rmse 0.01508607  max resid 0.06257085 
## Run 114 stress 0.1046388 
## Run 115 stress 0.0936192 
## Run 116 stress 0.08080951 
## Run 117 stress 0.08003946 
## ... Procrustes: rmse 0.008968648  max resid 0.03268108 
## Run 118 stress 0.07977106 
## ... Procrustes: rmse 1.093668e-05  max resid 4.152323e-05 
## ... Similar to previous best
## Run 119 stress 0.07977106 
## ... Procrustes: rmse 1.504138e-05  max resid 4.370252e-05 
## ... Similar to previous best
## Run 120 stress 0.09361921 
## Run 121 stress 0.08003946 
## ... Procrustes: rmse 0.00896834  max resid 0.03268125 
## Run 122 stress 0.08003946 
## ... Procrustes: rmse 0.008968954  max resid 0.03268258 
## Run 123 stress 0.09358437 
## Run 124 stress 0.09415412 
## Run 125 stress 0.09248698 
## Run 126 stress 0.08080953 
## Run 127 stress 0.09248706 
## Run 128 stress 0.07977107 
## ... Procrustes: rmse 4.249762e-05  max resid 0.0001561717 
## ... Similar to previous best
## Run 129 stress 0.1058009 
## Run 130 stress 0.080207 
## ... Procrustes: rmse 0.01509953  max resid 0.06264199 
## Run 131 stress 0.08020701 
## ... Procrustes: rmse 0.01510642  max resid 0.06268359 
## Run 132 stress 0.08020699 
## ... Procrustes: rmse 0.01509512  max resid 0.06261872 
## Run 133 stress 0.0935846 
## Run 134 stress 0.07977109 
## ... Procrustes: rmse 7.114301e-05  max resid 0.0002587311 
## ... Similar to previous best
## Run 135 stress 0.09219212 
## Run 136 stress 0.08080952 
## Run 137 stress 0.07977105 
## ... Procrustes: rmse 5.046287e-06  max resid 1.242569e-05 
## ... Similar to previous best
## Run 138 stress 0.09280599 
## Run 139 stress 0.07977105 
## ... Procrustes: rmse 5.330631e-06  max resid 1.700095e-05 
## ... Similar to previous best
## Run 140 stress 0.08080954 
## Run 141 stress 0.09219211 
## Run 142 stress 0.08003946 
## ... Procrustes: rmse 0.008968707  max resid 0.03268214 
## Run 143 stress 0.07977105 
## ... Procrustes: rmse 8.872442e-06  max resid 2.638477e-05 
## ... Similar to previous best
## Run 144 stress 0.0941542 
## Run 145 stress 0.08020702 
## ... Procrustes: rmse 0.01512134  max resid 0.06275252 
## Run 146 stress 0.07977106 
## ... Procrustes: rmse 1.706696e-05  max resid 6.243868e-05 
## ... Similar to previous best
## Run 147 stress 0.09423223 
## Run 148 stress 0.08020699 
## ... Procrustes: rmse 0.01509649  max resid 0.06262623 
## Run 149 stress 0.09423224 
## Run 150 stress 0.09317079 
## Run 151 stress 0.09415419 
## Run 152 stress 0.08003948 
## ... Procrustes: rmse 0.008969164  max resid 0.03268289 
## Run 153 stress 0.08020701 
## ... Procrustes: rmse 0.01511203  max resid 0.06270764 
## Run 154 stress 0.09443013 
## Run 155 stress 0.08003947 
## ... Procrustes: rmse 0.008967023  max resid 0.03268158 
## Run 156 stress 0.09443016 
## Run 157 stress 0.08003946 
## ... Procrustes: rmse 0.008968257  max resid 0.03268092 
## Run 158 stress 0.08020699 
## ... Procrustes: rmse 0.01509141  max resid 0.06259945 
## Run 159 stress 0.09423226 
## Run 160 stress 0.08003947 
## ... Procrustes: rmse 0.008968973  max resid 0.03268282 
## Run 161 stress 0.09415411 
## Run 162 stress 0.08003946 
## ... Procrustes: rmse 0.008968764  max resid 0.03268318 
## Run 163 stress 0.07977108 
## ... Procrustes: rmse 5.166575e-05  max resid 0.0001543019 
## ... Similar to previous best
## Run 164 stress 0.07977107 
## ... Procrustes: rmse 3.256416e-05  max resid 0.000116869 
## ... Similar to previous best
## Run 165 stress 0.09219213 
## Run 166 stress 0.1086323 
## Run 167 stress 0.09358471 
## Run 168 stress 0.09250215 
## Run 169 stress 0.09360579 
## Run 170 stress 0.09280571 
## Run 171 stress 0.08003947 
## ... Procrustes: rmse 0.008968605  max resid 0.03268143 
## Run 172 stress 0.07977105 
## ... Procrustes: rmse 7.083058e-06  max resid 2.437608e-05 
## ... Similar to previous best
## Run 173 stress 0.09225269 
## Run 174 stress 0.09415411 
## Run 175 stress 0.08003946 
## ... Procrustes: rmse 0.008968769  max resid 0.03268238 
## Run 176 stress 0.0922528 
## Run 177 stress 0.09317082 
## Run 178 stress 0.08020699 
## ... Procrustes: rmse 0.0150933  max resid 0.06260946 
## Run 179 stress 0.09280579 
## Run 180 stress 0.08020702 
## ... Procrustes: rmse 0.01512555  max resid 0.06277291 
## Run 181 stress 0.09317079 
## Run 182 stress 0.09415411 
## Run 183 stress 0.08020699 
## ... Procrustes: rmse 0.01509345  max resid 0.06260995 
## Run 184 stress 0.08003946 
## ... Procrustes: rmse 0.008968646  max resid 0.03268103 
## Run 185 stress 0.09250205 
## Run 186 stress 0.09219212 
## Run 187 stress 0.08003947 
## ... Procrustes: rmse 0.008965422  max resid 0.03267652 
## Run 188 stress 0.1068775 
## Run 189 stress 0.09219214 
## Run 190 stress 0.09317082 
## Run 191 stress 0.09254292 
## Run 192 stress 0.09415411 
## Run 193 stress 0.07977105 
## ... Procrustes: rmse 3.115537e-06  max resid 9.758715e-06 
## ... Similar to previous best
## Run 194 stress 0.1057134 
## Run 195 stress 0.07977105 
## ... New best solution
## ... Procrustes: rmse 4.925598e-06  max resid 1.749852e-05 
## ... Similar to previous best
## Run 196 stress 0.09423227 
## Run 197 stress 0.0931708 
## Run 198 stress 0.109616 
## Run 199 stress 0.08003947 
## ... Procrustes: rmse 0.008967561  max resid 0.03267759 
## Run 200 stress 0.08003946 
## ... Procrustes: rmse 0.008968732  max resid 0.03267749 
## Run 201 stress 0.07977106 
## ... Procrustes: rmse 1.146788e-05  max resid 4.178688e-05 
## ... Similar to previous best
## Run 202 stress 0.09443015 
## Run 203 stress 0.07977106 
## ... Procrustes: rmse 1.200553e-05  max resid 3.139871e-05 
## ... Similar to previous best
## Run 204 stress 0.08003946 
## ... Procrustes: rmse 0.008968032  max resid 0.03267405 
## Run 205 stress 0.08020699 
## ... Procrustes: rmse 0.01507541  max resid 0.06251308 
## Run 206 stress 0.08020699 
## ... Procrustes: rmse 0.01507719  max resid 0.06252819 
## Run 207 stress 0.080207 
## ... Procrustes: rmse 0.01510687  max resid 0.0626773 
## Run 208 stress 0.08020701 
## ... Procrustes: rmse 0.01510082  max resid 0.0626489 
## Run 209 stress 0.09423223 
## Run 210 stress 0.07977107 
## ... Procrustes: rmse 4.833825e-05  max resid 0.0001728461 
## ... Similar to previous best
## Run 211 stress 0.08020699 
## ... Procrustes: rmse 0.0150819  max resid 0.0625477 
## Run 212 stress 0.08020699 
## ... Procrustes: rmse 0.01508813  max resid 0.06258011 
## Run 213 stress 0.09254301 
## Run 214 stress 0.07977105 
## ... Procrustes: rmse 4.255301e-06  max resid 9.363171e-06 
## ... Similar to previous best
## Run 215 stress 0.08020703 
## ... Procrustes: rmse 0.01503655  max resid 0.06231462 
## Run 216 stress 0.092502 
## Run 217 stress 0.080207 
## ... Procrustes: rmse 0.01510208  max resid 0.06265184 
## Run 218 stress 0.09317092 
## Run 219 stress 0.09415411 
## Run 220 stress 0.09280584 
## Run 221 stress 0.09415411 
## Run 222 stress 0.08003947 
## ... Procrustes: rmse 0.008968034  max resid 0.03267739 
## Run 223 stress 0.08003946 
## ... Procrustes: rmse 0.008967122  max resid 0.03267211 
## Run 224 stress 0.08080968 
## Run 225 stress 0.08003946 
## ... Procrustes: rmse 0.008968453  max resid 0.03267711 
## Run 226 stress 0.3632456 
## Run 227 stress 0.09254291 
## Run 228 stress 0.080207 
## ... Procrustes: rmse 0.01510348  max resid 0.06266366 
## Run 229 stress 0.08020699 
## ... Procrustes: rmse 0.01508604  max resid 0.06256546 
## Run 230 stress 0.07977108 
## ... Procrustes: rmse 5.67921e-05  max resid 0.000206803 
## ... Similar to previous best
## Run 231 stress 0.09415417 
## Run 232 stress 0.0931708 
## Run 233 stress 0.0941542 
## Run 234 stress 0.07977107 
## ... Procrustes: rmse 1.60666e-05  max resid 4.161669e-05 
## ... Similar to previous best
## Run 235 stress 0.08020699 
## ... Procrustes: rmse 0.0150925  max resid 0.06260323 
## Run 236 stress 0.08003946 
## ... Procrustes: rmse 0.008967867  max resid 0.03267575 
## Run 237 stress 0.08020699 
## ... Procrustes: rmse 0.01508471  max resid 0.06256289 
## Run 238 stress 0.08003946 
## ... Procrustes: rmse 0.008968008  max resid 0.03267766 
## Run 239 stress 0.07977108 
## ... Procrustes: rmse 4.545227e-05  max resid 0.0001637854 
## ... Similar to previous best
## Run 240 stress 0.09219209 
## Run 241 stress 0.09225287 
## Run 242 stress 0.07977106 
## ... Procrustes: rmse 5.855399e-06  max resid 1.912649e-05 
## ... Similar to previous best
## Run 243 stress 0.08020699 
## ... Procrustes: rmse 0.01507682  max resid 0.06252205 
## Run 244 stress 0.07977105 
## ... Procrustes: rmse 1.591218e-06  max resid 4.797992e-06 
## ... Similar to previous best
## Run 245 stress 0.07977106 
## ... Procrustes: rmse 1.01796e-05  max resid 2.561404e-05 
## ... Similar to previous best
## Run 246 stress 0.08003946 
## ... Procrustes: rmse 0.008967859  max resid 0.03267707 
## Run 247 stress 0.09250195 
## Run 248 stress 0.07977106 
## ... Procrustes: rmse 2.155948e-05  max resid 8.077219e-05 
## ... Similar to previous best
## Run 249 stress 0.08003949 
## ... Procrustes: rmse 0.0089683  max resid 0.03267862 
## Run 250 stress 0.07977106 
## ... Procrustes: rmse 7.051266e-06  max resid 2.413324e-05 
## ... Similar to previous best
## Run 251 stress 0.08020699 
## ... Procrustes: rmse 0.01508392  max resid 0.06255241 
## Run 252 stress 0.09317079 
## Run 253 stress 0.08080953 
## Run 254 stress 0.07977107 
## ... Procrustes: rmse 1.693487e-05  max resid 5.250048e-05 
## ... Similar to previous best
## Run 255 stress 0.1089964 
## Run 256 stress 0.09225281 
## Run 257 stress 0.09423231 
## Run 258 stress 0.09443012 
## Run 259 stress 0.07977106 
## ... Procrustes: rmse 1.753357e-05  max resid 3.851474e-05 
## ... Similar to previous best
## Run 260 stress 0.08003946 
## ... Procrustes: rmse 0.008967468  max resid 0.03267664 
## Run 261 stress 0.08080952 
## Run 262 stress 0.09443011 
## Run 263 stress 0.08003948 
## ... Procrustes: rmse 0.008965482  max resid 0.03267277 
## Run 264 stress 0.09280573 
## Run 265 stress 0.09254292 
## Run 266 stress 0.08003946 
## ... Procrustes: rmse 0.008967633  max resid 0.03267845 
## Run 267 stress 0.09219209 
## Run 268 stress 0.09219209 
## Run 269 stress 0.07977106 
## ... Procrustes: rmse 9.40408e-06  max resid 2.437127e-05 
## ... Similar to previous best
## Run 270 stress 0.07977105 
## ... New best solution
## ... Procrustes: rmse 2.011872e-06  max resid 6.525581e-06 
## ... Similar to previous best
## Run 271 stress 0.09280592 
## Run 272 stress 0.09443022 
## Run 273 stress 0.08020702 
## ... Procrustes: rmse 0.01511765  max resid 0.0627414 
## Run 274 stress 0.08080955 
## Run 275 stress 0.1106969 
## Run 276 stress 0.08080962 
## Run 277 stress 0.080207 
## ... Procrustes: rmse 0.01506829  max resid 0.06248077 
## Run 278 stress 0.0935844 
## Run 279 stress 0.09361929 
## Run 280 stress 0.08003946 
## ... Procrustes: rmse 0.008968059  max resid 0.03267798 
## Run 281 stress 0.09280571 
## Run 282 stress 0.08020699 
## ... Procrustes: rmse 0.01507808  max resid 0.06252484 
## Run 283 stress 0.1045853 
## Run 284 stress 0.08020706 
## ... Procrustes: rmse 0.01514664  max resid 0.06288191 
## Run 285 stress 0.1099775 
## Run 286 stress 0.1052003 
## Run 287 stress 0.08003946 
## ... Procrustes: rmse 0.008967922  max resid 0.03267839 
## Run 288 stress 0.08020701 
## ... Procrustes: rmse 0.0151137  max resid 0.0627182 
## Run 289 stress 0.09358421 
## Run 290 stress 0.08003946 
## ... Procrustes: rmse 0.008967782  max resid 0.03267573 
## Run 291 stress 0.08080953 
## Run 292 stress 0.08020699 
## ... Procrustes: rmse 0.01506741  max resid 0.06247522 
## Run 293 stress 0.080207 
## ... Procrustes: rmse 0.01510849  max resid 0.06268632 
## Run 294 stress 0.08020699 
## ... Procrustes: rmse 0.01507663  max resid 0.06252231 
## Run 295 stress 0.1096545 
## Run 296 stress 0.1032909 
## Run 297 stress 0.07977106 
## ... Procrustes: rmse 1.598542e-05  max resid 4.343332e-05 
## ... Similar to previous best
## Run 298 stress 0.08080962 
## Run 299 stress 0.08003946 
## ... Procrustes: rmse 0.00896826  max resid 0.03267755 
## Run 300 stress 0.07977106 
## ... Procrustes: rmse 1.187156e-05  max resid 2.70274e-05 
## ... Similar to previous best
## Run 301 stress 0.08020701 
## ... Procrustes: rmse 0.01510365  max resid 0.06266246 
## Run 302 stress 0.09254299 
## Run 303 stress 0.080207 
## ... Procrustes: rmse 0.01507402  max resid 0.06249949 
## Run 304 stress 0.1029986 
## Run 305 stress 0.09219223 
## Run 306 stress 0.09219212 
## Run 307 stress 0.07977106 
## ... Procrustes: rmse 1.956882e-05  max resid 7.031079e-05 
## ... Similar to previous best
## Run 308 stress 0.0921921 
## Run 309 stress 0.09415413 
## Run 310 stress 0.09443011 
## Run 311 stress 0.08020701 
## ... Procrustes: rmse 0.01510711  max resid 0.06268011 
## Run 312 stress 0.080207 
## ... Procrustes: rmse 0.01505913  max resid 0.06243359 
## Run 313 stress 0.09443021 
## Run 314 stress 0.093263 
## Run 315 stress 0.080207 
## ... Procrustes: rmse 0.01510752  max resid 0.06268286 
## Run 316 stress 0.1065183 
## Run 317 stress 0.09219211 
## Run 318 stress 0.080207 
## ... Procrustes: rmse 0.01505743  max resid 0.06242463 
## Run 319 stress 0.09415413 
## Run 320 stress 0.09358457 
## Run 321 stress 0.09415422 
## Run 322 stress 0.09219211 
## Run 323 stress 0.09254292 
## Run 324 stress 0.08003946 
## ... Procrustes: rmse 0.008967436  max resid 0.03267581 
## Run 325 stress 0.09415411 
## Run 326 stress 0.07977105 
## ... Procrustes: rmse 1.544727e-06  max resid 3.776931e-06 
## ... Similar to previous best
## Run 327 stress 0.07977106 
## ... Procrustes: rmse 1.413839e-05  max resid 4.210401e-05 
## ... Similar to previous best
## Run 328 stress 0.1073078 
## Run 329 stress 0.09443024 
## Run 330 stress 0.07977106 
## ... Procrustes: rmse 2.094044e-05  max resid 5.151411e-05 
## ... Similar to previous best
## Run 331 stress 0.1106896 
## Run 332 stress 0.0921921 
## Run 333 stress 0.0941542 
## Run 334 stress 0.08020699 
## ... Procrustes: rmse 0.01506749  max resid 0.06247592 
## Run 335 stress 0.09358442 
## Run 336 stress 0.08003947 
## ... Procrustes: rmse 0.008966889  max resid 0.03267796 
## Run 337 stress 0.08020704 
## ... Procrustes: rmse 0.01505059  max resid 0.06238693 
## Run 338 stress 0.08080953 
## Run 339 stress 0.09254295 
## Run 340 stress 0.07977106 
## ... Procrustes: rmse 1.794877e-05  max resid 4.815618e-05 
## ... Similar to previous best
## Run 341 stress 0.07977106 
## ... Procrustes: rmse 2.501838e-05  max resid 9.188402e-05 
## ... Similar to previous best
## Run 342 stress 0.08020699 
## ... Procrustes: rmse 0.01508993  max resid 0.06259128 
## Run 343 stress 0.09415412 
## Run 344 stress 0.09361933 
## Run 345 stress 0.09358443 
## Run 346 stress 0.07977106 
## ... Procrustes: rmse 6.914834e-06  max resid 2.582085e-05 
## ... Similar to previous best
## Run 347 stress 0.07977105 
## ... Procrustes: rmse 6.621525e-06  max resid 1.686842e-05 
## ... Similar to previous best
## Run 348 stress 0.1044201 
## Run 349 stress 0.08003947 
## ... Procrustes: rmse 0.008967914  max resid 0.03267838 
## Run 350 stress 0.08003946 
## ... Procrustes: rmse 0.0089669  max resid 0.0326774 
## Run 351 stress 0.09326299 
## Run 352 stress 0.09361939 
## Run 353 stress 0.080207 
## ... Procrustes: rmse 0.01510021  max resid 0.06264488 
## Run 354 stress 0.080207 
## ... Procrustes: rmse 0.01509235  max resid 0.06260291 
## Run 355 stress 0.07977105 
## ... Procrustes: rmse 1.497292e-06  max resid 3.385424e-06 
## ... Similar to previous best
## Run 356 stress 0.08003946 
## ... Procrustes: rmse 0.008967944  max resid 0.03267869 
## Run 357 stress 0.08020703 
## ... Procrustes: rmse 0.01511895  max resid 0.06274139 
## Run 358 stress 0.0922527 
## Run 359 stress 0.08003946 
## ... Procrustes: rmse 0.008968081  max resid 0.03267873 
## Run 360 stress 0.09280582 
## Run 361 stress 0.09225288 
## Run 362 stress 0.09361919 
## Run 363 stress 0.07977105 
## ... Procrustes: rmse 3.241877e-06  max resid 1.038126e-05 
## ... Similar to previous best
## Run 364 stress 0.09423224 
## Run 365 stress 0.09392287 
## Run 366 stress 0.09392285 
## Run 367 stress 0.08080951 
## Run 368 stress 0.08020699 
## ... Procrustes: rmse 0.01508938  max resid 0.0625868 
## Run 369 stress 0.080207 
## ... Procrustes: rmse 0.01505948  max resid 0.06243384 
## Run 370 stress 0.07977106 
## ... Procrustes: rmse 1.960041e-05  max resid 5.185965e-05 
## ... Similar to previous best
## Run 371 stress 0.08020701 
## ... Procrustes: rmse 0.01511454  max resid 0.06271671 
## Run 372 stress 0.09392286 
## Run 373 stress 0.07977105 
## ... Procrustes: rmse 3.541354e-06  max resid 1.219831e-05 
## ... Similar to previous best
## Run 374 stress 0.09443017 
## Run 375 stress 0.08003946 
## ... Procrustes: rmse 0.008968247  max resid 0.0326778 
## Run 376 stress 0.09443012 
## Run 377 stress 0.09248701 
## Run 378 stress 0.0931708 
## Run 379 stress 0.08003946 
## ... Procrustes: rmse 0.008968094  max resid 0.03267871 
## Run 380 stress 0.080207 
## ... Procrustes: rmse 0.01510683  max resid 0.06267692 
## Run 381 stress 0.09250215 
## Run 382 stress 0.08003946 
## ... Procrustes: rmse 0.008968084  max resid 0.03267914 
## Run 383 stress 0.08003946 
## ... Procrustes: rmse 0.008968161  max resid 0.03267952 
## Run 384 stress 0.09423223 
## Run 385 stress 0.09254292 
## Run 386 stress 0.09358424 
## Run 387 stress 0.08080955 
## Run 388 stress 0.09254292 
## Run 389 stress 0.07977106 
## ... Procrustes: rmse 9.34525e-06  max resid 2.672507e-05 
## ... Similar to previous best
## Run 390 stress 0.07977106 
## ... Procrustes: rmse 8.198641e-06  max resid 2.650448e-05 
## ... Similar to previous best
## Run 391 stress 0.08003948 
## ... Procrustes: rmse 0.008968519  max resid 0.03268003 
## Run 392 stress 0.07977106 
## ... Procrustes: rmse 3.487567e-05  max resid 0.0001273216 
## ... Similar to previous best
## Run 393 stress 0.07977106 
## ... Procrustes: rmse 1.133956e-05  max resid 4.068184e-05 
## ... Similar to previous best
## Run 394 stress 0.08003946 
## ... Procrustes: rmse 0.008968076  max resid 0.03267948 
## Run 395 stress 0.08003947 
## ... Procrustes: rmse 0.008970783  max resid 0.03268166 
## Run 396 stress 0.09443011 
## Run 397 stress 0.09443021 
## Run 398 stress 0.08003946 
## ... Procrustes: rmse 0.008968248  max resid 0.03267972 
## Run 399 stress 0.09443011 
## Run 400 stress 0.08080957 
## Run 401 stress 0.08003948 
## ... Procrustes: rmse 0.008968462  max resid 0.03267952 
## Run 402 stress 0.08080952 
## Run 403 stress 0.07977105 
## ... Procrustes: rmse 3.212079e-06  max resid 1.17542e-05 
## ... Similar to previous best
## Run 404 stress 0.08003946 
## ... Procrustes: rmse 0.008968457  max resid 0.03267812 
## Run 405 stress 0.08003946 
## ... Procrustes: rmse 0.00896767  max resid 0.03267762 
## Run 406 stress 0.07977106 
## ... Procrustes: rmse 1.855959e-05  max resid 4.826717e-05 
## ... Similar to previous best
## Run 407 stress 0.08003948 
## ... Procrustes: rmse 0.008968608  max resid 0.03267354 
## Run 408 stress 0.09280584 
## Run 409 stress 0.0944302 
## Run 410 stress 0.0921921 
## Run 411 stress 0.07977106 
## ... Procrustes: rmse 7.963426e-06  max resid 2.354231e-05 
## ... Similar to previous best
## Run 412 stress 0.0808096 
## Run 413 stress 0.080207 
## ... Procrustes: rmse 0.01511121  max resid 0.06269965 
## Run 414 stress 0.09317086 
## Run 415 stress 0.1086321 
## Run 416 stress 0.09219216 
## Run 417 stress 0.08020699 
## ... Procrustes: rmse 0.01507943  max resid 0.06253929 
## Run 418 stress 0.0935844 
## Run 419 stress 0.08003946 
## ... Procrustes: rmse 0.008968556  max resid 0.03267648 
## Run 420 stress 0.09250196 
## Run 421 stress 0.09254293 
## Run 422 stress 0.08020699 
## ... Procrustes: rmse 0.01508954  max resid 0.06258909 
## Run 423 stress 0.08080958 
## Run 424 stress 0.08003946 
## ... Procrustes: rmse 0.008967921  max resid 0.0326786 
## Run 425 stress 0.08080961 
## Run 426 stress 0.08003946 
## ... Procrustes: rmse 0.008968228  max resid 0.03267927 
## Run 427 stress 0.09248717 
## Run 428 stress 0.080207 
## ... Procrustes: rmse 0.01509112  max resid 0.06259766 
## Run 429 stress 0.07977106 
## ... Procrustes: rmse 7.468845e-06  max resid 2.673003e-05 
## ... Similar to previous best
## Run 430 stress 0.08080959 
## Run 431 stress 0.080207 
## ... Procrustes: rmse 0.01510668  max resid 0.06267706 
## Run 432 stress 0.09248697 
## Run 433 stress 0.1106177 
## Run 434 stress 0.08080954 
## Run 435 stress 0.09361918 
## Run 436 stress 0.1140412 
## Run 437 stress 0.08003946 
## ... Procrustes: rmse 0.008968085  max resid 0.03267887 
## Run 438 stress 0.08003946 
## ... Procrustes: rmse 0.008968251  max resid 0.03267877 
## Run 439 stress 0.09326302 
## Run 440 stress 0.07977106 
## ... Procrustes: rmse 3.260558e-05  max resid 0.0001072776 
## ... Similar to previous best
## Run 441 stress 0.08020705 
## ... Procrustes: rmse 0.01502584  max resid 0.06226219 
## Run 442 stress 0.09330278 
## Run 443 stress 0.09415411 
## Run 444 stress 0.09248708 
## Run 445 stress 0.08080953 
## Run 446 stress 0.1035315 
## Run 447 stress 0.08080951 
## Run 448 stress 0.1037787 
## Run 449 stress 0.09415412 
## Run 450 stress 0.08020699 
## ... Procrustes: rmse 0.01508995  max resid 0.06259011 
## Run 451 stress 0.09280576 
## Run 452 stress 0.08003946 
## ... Procrustes: rmse 0.008968028  max resid 0.03267812 
## Run 453 stress 0.07977105 
## ... Procrustes: rmse 4.744879e-06  max resid 1.8968e-05 
## ... Similar to previous best
## Run 454 stress 0.08020699 
## ... Procrustes: rmse 0.01508392  max resid 0.06256038 
## Run 455 stress 0.07977106 
## ... Procrustes: rmse 8.1858e-06  max resid 2.798496e-05 
## ... Similar to previous best
## Run 456 stress 0.08080953 
## Run 457 stress 0.08003946 
## ... Procrustes: rmse 0.008968189  max resid 0.03267868 
## Run 458 stress 0.08080953 
## Run 459 stress 0.08003946 
## ... Procrustes: rmse 0.00896792  max resid 0.03267801 
## Run 460 stress 0.1061577 
## Run 461 stress 0.09219212 
## Run 462 stress 0.08003946 
## ... Procrustes: rmse 0.008967132  max resid 0.03267463 
## Run 463 stress 0.09248708 
## Run 464 stress 0.109616 
## Run 465 stress 0.080207 
## ... Procrustes: rmse 0.0150553  max resid 0.06241371 
## Run 466 stress 0.08080954 
## Run 467 stress 0.07977105 
## ... Procrustes: rmse 6.586585e-06  max resid 1.941231e-05 
## ... Similar to previous best
## Run 468 stress 0.08003946 
## ... Procrustes: rmse 0.008967814  max resid 0.03267867 
## Run 469 stress 0.08003946 
## ... Procrustes: rmse 0.008968406  max resid 0.03267934 
## Run 470 stress 0.09254291 
## Run 471 stress 0.08020699 
## ... Procrustes: rmse 0.01507616  max resid 0.06251698 
## Run 472 stress 0.09358436 
## Run 473 stress 0.080207 
## ... Procrustes: rmse 0.0151026  max resid 0.06265801 
## Run 474 stress 0.08080951 
## Run 475 stress 0.080207 
## ... Procrustes: rmse 0.01510418  max resid 0.06266588 
## Run 476 stress 0.08020699 
## ... Procrustes: rmse 0.01508801  max resid 0.06258143 
## Run 477 stress 0.08020699 
## ... Procrustes: rmse 0.01507652  max resid 0.06252114 
## Run 478 stress 0.09280583 
## Run 479 stress 0.08080969 
## Run 480 stress 0.08003946 
## ... Procrustes: rmse 0.00896807  max resid 0.03267918 
## Run 481 stress 0.09423229 
## Run 482 stress 0.09254293 
## Run 483 stress 0.08020699 
## ... Procrustes: rmse 0.01508363  max resid 0.06255806 
## Run 484 stress 0.09219209 
## Run 485 stress 0.09358437 
## Run 486 stress 0.07977106 
## ... Procrustes: rmse 5.666799e-06  max resid 1.812246e-05 
## ... Similar to previous best
## Run 487 stress 0.1071467 
## Run 488 stress 0.09415413 
## Run 489 stress 0.08020699 
## ... Procrustes: rmse 0.01508929  max resid 0.06258756 
## Run 490 stress 0.08020699 
## ... Procrustes: rmse 0.01509094  max resid 0.06259634 
## Run 491 stress 0.08020704 
## ... Procrustes: rmse 0.01512637  max resid 0.06277925 
## Run 492 stress 0.08020699 
## ... Procrustes: rmse 0.0150854  max resid 0.06256315 
## Run 493 stress 0.08003947 
## ... Procrustes: rmse 0.008967125  max resid 0.03267375 
## Run 494 stress 0.08020703 
## ... Procrustes: rmse 0.01508021  max resid 0.06253879 
## Run 495 stress 0.08080953 
## Run 496 stress 0.09248723 
## Run 497 stress 0.08003946 
## ... Procrustes: rmse 0.008968483  max resid 0.03267947 
## Run 498 stress 0.09330298 
## Run 499 stress 0.09317084 
## Run 500 stress 0.09317079 
## *** Best solution repeated 28 times
round(pd_NMDS$stress, digits = 2)
## [1] 0.08
# Mixed and stratified lakes
pdms_NMDS <- metaMDS(pdms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.05034944 
## Run 1 stress 0.05169928 
## Run 2 stress 0.06904469 
## Run 3 stress 0.05332951 
## Run 4 stress 0.06938768 
## Run 5 stress 0.05355333 
## Run 6 stress 0.05928211 
## Run 7 stress 0.06136678 
## Run 8 stress 0.06476224 
## Run 9 stress 0.05577189 
## Run 10 stress 0.05034952 
## ... Procrustes: rmse 0.0002513181  max resid 0.0006159176 
## ... Similar to previous best
## Run 11 stress 0.05049127 
## ... Procrustes: rmse 0.03591959  max resid 0.1226653 
## Run 12 stress 0.05928215 
## Run 13 stress 0.05049129 
## ... Procrustes: rmse 0.03592274  max resid 0.1226741 
## Run 14 stress 0.05169928 
## Run 15 stress 0.05049125 
## ... Procrustes: rmse 0.0358915  max resid 0.1225855 
## Run 16 stress 0.05049248 
## ... Procrustes: rmse 0.03581969  max resid 0.1223524 
## Run 17 stress 0.05403596 
## Run 18 stress 0.05034941 
## ... New best solution
## ... Procrustes: rmse 0.0001119516  max resid 0.0002897073 
## ... Similar to previous best
## Run 19 stress 0.05355229 
## Run 20 stress 0.05440343 
## Run 21 stress 0.0535522 
## Run 22 stress 0.05355231 
## Run 23 stress 0.05900152 
## Run 24 stress 0.05577191 
## Run 25 stress 0.05900151 
## Run 26 stress 0.05049227 
## ... Procrustes: rmse 0.0357583  max resid 0.1221627 
## Run 27 stress 0.05577185 
## Run 28 stress 0.05440342 
## Run 29 stress 0.05049169 
## ... Procrustes: rmse 0.03579363  max resid 0.1222795 
## Run 30 stress 0.05968626 
## Run 31 stress 0.05364429 
## Run 32 stress 0.05829933 
## Run 33 stress 0.05979229 
## Run 34 stress 0.06478522 
## Run 35 stress 0.05440343 
## Run 36 stress 0.0535522 
## Run 37 stress 0.05169927 
## Run 38 stress 0.05169927 
## Run 39 stress 0.05049168 
## ... Procrustes: rmse 0.0357988  max resid 0.1222948 
## Run 40 stress 0.0503495 
## ... Procrustes: rmse 0.0001777417  max resid 0.0004694626 
## ... Similar to previous best
## Run 41 stress 0.06478546 
## Run 42 stress 0.05034943 
## ... Procrustes: rmse 2.322038e-05  max resid 5.631387e-05 
## ... Similar to previous best
## Run 43 stress 0.05355332 
## Run 44 stress 0.05577178 
## Run 45 stress 0.05049128 
## ... Procrustes: rmse 0.03587969  max resid 0.1225356 
## Run 46 stress 0.05968628 
## Run 47 stress 0.06136686 
## Run 48 stress 0.05440342 
## Run 49 stress 0.05979229 
## Run 50 stress 0.06609068 
## Run 51 stress 0.05577179 
## Run 52 stress 0.06309836 
## Run 53 stress 0.05332948 
## Run 54 stress 0.05034947 
## ... Procrustes: rmse 9.449138e-05  max resid 0.0002530002 
## ... Similar to previous best
## Run 55 stress 0.3592572 
## Run 56 stress 0.05968634 
## Run 57 stress 0.0582994 
## Run 58 stress 0.05034943 
## ... Procrustes: rmse 3.684745e-05  max resid 9.462112e-05 
## ... Similar to previous best
## Run 59 stress 0.05034942 
## ... Procrustes: rmse 5.663432e-05  max resid 0.000160109 
## ... Similar to previous best
## Run 60 stress 0.06674564 
## Run 61 stress 0.05577176 
## Run 62 stress 0.05355234 
## Run 63 stress 0.0536444 
## Run 64 stress 0.05049216 
## ... Procrustes: rmse 0.03578206  max resid 0.1222321 
## Run 65 stress 0.06640359 
## Run 66 stress 0.05169927 
## Run 67 stress 0.05440343 
## Run 68 stress 0.05577179 
## Run 69 stress 0.05034953 
## ... Procrustes: rmse 0.0001497493  max resid 0.0003910249 
## ... Similar to previous best
## Run 70 stress 0.06478539 
## Run 71 stress 0.05332949 
## Run 72 stress 0.05928224 
## Run 73 stress 0.05169928 
## Run 74 stress 0.05928221 
## Run 75 stress 0.05829931 
## Run 76 stress 0.07015943 
## Run 77 stress 0.06537624 
## Run 78 stress 0.05169927 
## Run 79 stress 0.05034947 
## ... Procrustes: rmse 0.0001416733  max resid 0.0003730022 
## ... Similar to previous best
## Run 80 stress 0.06111766 
## Run 81 stress 0.05928258 
## Run 82 stress 0.05968626 
## Run 83 stress 0.05968647 
## Run 84 stress 0.06136676 
## Run 85 stress 0.05968626 
## Run 86 stress 0.06136693 
## Run 87 stress 0.062313 
## Run 88 stress 0.05034956 
## ... Procrustes: rmse 0.000168225  max resid 0.0004381748 
## ... Similar to previous best
## Run 89 stress 0.05049223 
## ... Procrustes: rmse 0.03578163  max resid 0.1222303 
## Run 90 stress 0.05049227 
## ... Procrustes: rmse 0.03577688  max resid 0.1222139 
## Run 91 stress 0.05829931 
## Run 92 stress 0.05332957 
## Run 93 stress 0.05440342 
## Run 94 stress 0.05049128 
## ... Procrustes: rmse 0.03588397  max resid 0.1225489 
## Run 95 stress 0.05829931 
## Run 96 stress 0.06231291 
## Run 97 stress 0.05355225 
## Run 98 stress 0.06716793 
## Run 99 stress 0.05169927 
## Run 100 stress 0.06136679 
## Run 101 stress 0.05900151 
## Run 102 stress 0.0516993 
## Run 103 stress 0.05332952 
## Run 104 stress 0.05355232 
## Run 105 stress 0.05928231 
## Run 106 stress 0.05169928 
## Run 107 stress 0.06027437 
## Run 108 stress 0.05364431 
## Run 109 stress 0.06483228 
## Run 110 stress 0.06640347 
## Run 111 stress 0.05049148 
## ... Procrustes: rmse 0.03575219  max resid 0.1221664 
## Run 112 stress 0.05169929 
## Run 113 stress 0.05034941 
## ... New best solution
## ... Procrustes: rmse 2.869684e-05  max resid 7.565256e-05 
## ... Similar to previous best
## Run 114 stress 0.05968629 
## Run 115 stress 0.05034949 
## ... Procrustes: rmse 0.0001342015  max resid 0.0003568826 
## ... Similar to previous best
## Run 116 stress 0.0592821 
## Run 117 stress 0.05355223 
## Run 118 stress 0.05034952 
## ... Procrustes: rmse 0.0001669554  max resid 0.0004339278 
## ... Similar to previous best
## Run 119 stress 0.05034949 
## ... Procrustes: rmse 0.0001412877  max resid 0.0003824361 
## ... Similar to previous best
## Run 120 stress 0.05049194 
## ... Procrustes: rmse 0.03579606  max resid 0.1222832 
## Run 121 stress 0.06309847 
## Run 122 stress 0.0533295 
## Run 123 stress 0.05403621 
## Run 124 stress 0.05049165 
## ... Procrustes: rmse 0.035806  max resid 0.1223201 
## Run 125 stress 0.05928236 
## Run 126 stress 0.05169929 
## Run 127 stress 0.05355237 
## Run 128 stress 0.05049145 
## ... Procrustes: rmse 0.03596207  max resid 0.1227769 
## Run 129 stress 0.06844318 
## Run 130 stress 0.05332951 
## Run 131 stress 0.05034947 
## ... Procrustes: rmse 0.0001143822  max resid 0.000291013 
## ... Similar to previous best
## Run 132 stress 0.05034947 
## ... Procrustes: rmse 0.0001299551  max resid 0.0003387644 
## ... Similar to previous best
## Run 133 stress 0.05968631 
## Run 134 stress 0.0582993 
## Run 135 stress 0.05034945 
## ... Procrustes: rmse 8.976964e-05  max resid 0.0002413732 
## ... Similar to previous best
## Run 136 stress 0.05049209 
## ... Procrustes: rmse 0.03579333  max resid 0.122272 
## Run 137 stress 0.05034944 
## ... Procrustes: rmse 8.366915e-05  max resid 0.0002193435 
## ... Similar to previous best
## Run 138 stress 0.0504919 
## ... Procrustes: rmse 0.03579627  max resid 0.122285 
## Run 139 stress 0.0503495 
## ... Procrustes: rmse 0.0001450992  max resid 0.0003851388 
## ... Similar to previous best
## Run 140 stress 0.06038954 
## Run 141 stress 0.06844287 
## Run 142 stress 0.05169927 
## Run 143 stress 0.06885068 
## Run 144 stress 0.05332949 
## Run 145 stress 0.05034948 
## ... Procrustes: rmse 0.0001158476  max resid 0.0003402796 
## ... Similar to previous best
## Run 146 stress 0.06844292 
## Run 147 stress 0.05440346 
## Run 148 stress 0.05169927 
## Run 149 stress 0.05034952 
## ... Procrustes: rmse 9.274204e-05  max resid 0.0002298989 
## ... Similar to previous best
## Run 150 stress 0.07217932 
## Run 151 stress 0.05403594 
## Run 152 stress 0.05169927 
## Run 153 stress 0.05355222 
## Run 154 stress 0.05829933 
## Run 155 stress 0.05364402 
## Run 156 stress 0.0596863 
## Run 157 stress 0.05169929 
## Run 158 stress 0.05034948 
## ... Procrustes: rmse 0.0001238202  max resid 0.0003403602 
## ... Similar to previous best
## Run 159 stress 0.05829937 
## Run 160 stress 0.05928216 
## Run 161 stress 0.05169927 
## Run 162 stress 0.05034943 
## ... Procrustes: rmse 6.602301e-05  max resid 0.0001732297 
## ... Similar to previous best
## Run 163 stress 0.05355225 
## Run 164 stress 0.05169928 
## Run 165 stress 0.05034945 
## ... Procrustes: rmse 8.715471e-05  max resid 0.000175811 
## ... Similar to previous best
## Run 166 stress 0.05403592 
## Run 167 stress 0.05034946 
## ... Procrustes: rmse 0.0001124735  max resid 0.0002812877 
## ... Similar to previous best
## Run 168 stress 0.05403607 
## Run 169 stress 0.05364453 
## Run 170 stress 0.06038948 
## Run 171 stress 0.05169929 
## Run 172 stress 0.05034945 
## ... Procrustes: rmse 7.304423e-05  max resid 0.0001851297 
## ... Similar to previous best
## Run 173 stress 0.05364381 
## Run 174 stress 0.05577192 
## Run 175 stress 0.0582993 
## Run 176 stress 0.05364387 
## Run 177 stress 0.06789763 
## Run 178 stress 0.05440343 
## Run 179 stress 0.05049133 
## ... Procrustes: rmse 0.03591294  max resid 0.122635 
## Run 180 stress 0.05355236 
## Run 181 stress 0.05169929 
## Run 182 stress 0.05034953 
## ... Procrustes: rmse 0.0001662843  max resid 0.0004474764 
## ... Similar to previous best
## Run 183 stress 0.05049131 
## ... Procrustes: rmse 0.03590163  max resid 0.122601 
## Run 184 stress 0.05034945 
## ... Procrustes: rmse 9.106411e-05  max resid 0.0002617201 
## ... Similar to previous best
## Run 185 stress 0.05169927 
## Run 186 stress 0.06362808 
## Run 187 stress 0.05049137 
## ... Procrustes: rmse 0.03593364  max resid 0.1226942 
## Run 188 stress 0.05900148 
## Run 189 stress 0.05169929 
## Run 190 stress 0.0592822 
## Run 191 stress 0.05355228 
## Run 192 stress 0.06478551 
## Run 193 stress 0.05355221 
## Run 194 stress 0.05577181 
## Run 195 stress 0.05049142 
## ... Procrustes: rmse 0.03592208  max resid 0.1226572 
## Run 196 stress 0.06309835 
## Run 197 stress 0.06309843 
## Run 198 stress 0.06504215 
## Run 199 stress 0.05049155 
## ... Procrustes: rmse 0.03580962  max resid 0.1223332 
## Run 200 stress 0.05034943 
## ... Procrustes: rmse 4.981513e-05  max resid 0.0001386869 
## ... Similar to previous best
## Run 201 stress 0.05332955 
## Run 202 stress 0.05034949 
## ... Procrustes: rmse 0.0001318455  max resid 0.0003444023 
## ... Similar to previous best
## Run 203 stress 0.05034945 
## ... Procrustes: rmse 8.963718e-05  max resid 0.0002323436 
## ... Similar to previous best
## Run 204 stress 0.05034951 
## ... Procrustes: rmse 0.0001439149  max resid 0.0003816056 
## ... Similar to previous best
## Run 205 stress 0.05364445 
## Run 206 stress 0.05440343 
## Run 207 stress 0.05049159 
## ... Procrustes: rmse 0.03580804  max resid 0.1223278 
## Run 208 stress 0.06409272 
## Run 209 stress 0.05034945 
## ... Procrustes: rmse 0.0001053039  max resid 0.0002769141 
## ... Similar to previous best
## Run 210 stress 0.05403577 
## Run 211 stress 0.05332953 
## Run 212 stress 0.05169927 
## Run 213 stress 0.05355221 
## Run 214 stress 0.0557719 
## Run 215 stress 0.06362784 
## Run 216 stress 0.05169928 
## Run 217 stress 0.05169928 
## Run 218 stress 0.05332974 
## Run 219 stress 0.06136677 
## Run 220 stress 0.05034944 
## ... Procrustes: rmse 7.22721e-05  max resid 0.0001865872 
## ... Similar to previous best
## Run 221 stress 0.05034944 
## ... Procrustes: rmse 7.776967e-05  max resid 0.0002023037 
## ... Similar to previous best
## Run 222 stress 0.06136682 
## Run 223 stress 0.05049139 
## ... Procrustes: rmse 0.03594839  max resid 0.1227378 
## Run 224 stress 0.06478527 
## Run 225 stress 0.05332951 
## Run 226 stress 0.06730243 
## Run 227 stress 0.07242316 
## Run 228 stress 0.05829934 
## Run 229 stress 0.05364452 
## Run 230 stress 0.05034942 
## ... Procrustes: rmse 4.677017e-05  max resid 0.0001246863 
## ... Similar to previous best
## Run 231 stress 0.06483224 
## Run 232 stress 0.05169927 
## Run 233 stress 0.06038945 
## Run 234 stress 0.05034964 
## ... Procrustes: rmse 0.0002425113  max resid 0.000648037 
## ... Similar to previous best
## Run 235 stress 0.0647855 
## Run 236 stress 0.05332948 
## Run 237 stress 0.05034943 
## ... Procrustes: rmse 6.850734e-05  max resid 0.0001712203 
## ... Similar to previous best
## Run 238 stress 0.05440342 
## Run 239 stress 0.06478539 
## Run 240 stress 0.06027427 
## Run 241 stress 0.05332947 
## Run 242 stress 0.05900149 
## Run 243 stress 0.05034941 
## ... Procrustes: rmse 1.274759e-05  max resid 2.871942e-05 
## ... Similar to previous best
## Run 244 stress 0.05332949 
## Run 245 stress 0.05968628 
## Run 246 stress 0.05049227 
## ... Procrustes: rmse 0.03580563  max resid 0.1223034 
## Run 247 stress 0.05968631 
## Run 248 stress 0.05829932 
## Run 249 stress 0.05169933 
## Run 250 stress 0.05332951 
## Run 251 stress 0.3657342 
## Run 252 stress 0.05355223 
## Run 253 stress 0.06027436 
## Run 254 stress 0.06027437 
## Run 255 stress 0.05049236 
## ... Procrustes: rmse 0.03578209  max resid 0.12223 
## Run 256 stress 0.05034942 
## ... Procrustes: rmse 6.168534e-05  max resid 0.0001622454 
## ... Similar to previous best
## Run 257 stress 0.05440343 
## Run 258 stress 0.05049221 
## ... Procrustes: rmse 0.03578723  max resid 0.1222496 
## Run 259 stress 0.05968625 
## Run 260 stress 0.05034945 
## ... Procrustes: rmse 0.0001014714  max resid 0.0002646534 
## ... Similar to previous best
## Run 261 stress 0.06655716 
## Run 262 stress 0.05355226 
## Run 263 stress 0.05034952 
## ... Procrustes: rmse 0.0001614409  max resid 0.0004396591 
## ... Similar to previous best
## Run 264 stress 0.05034954 
## ... Procrustes: rmse 0.0001832257  max resid 0.000489564 
## ... Similar to previous best
## Run 265 stress 0.05355225 
## Run 266 stress 0.06826672 
## Run 267 stress 0.344439 
## Run 268 stress 0.05332959 
## Run 269 stress 0.05355224 
## Run 270 stress 0.05968633 
## Run 271 stress 0.06203056 
## Run 272 stress 0.05829936 
## Run 273 stress 0.05049211 
## ... Procrustes: rmse 0.03579298  max resid 0.1222692 
## Run 274 stress 0.05049139 
## ... Procrustes: rmse 0.03594342  max resid 0.1227223 
## Run 275 stress 0.05364376 
## Run 276 stress 0.05355283 
## Run 277 stress 0.06136684 
## Run 278 stress 0.06038954 
## Run 279 stress 0.0630984 
## Run 280 stress 0.06478543 
## Run 281 stress 0.06504216 
## Run 282 stress 0.05169929 
## Run 283 stress 0.06309853 
## Run 284 stress 0.06309838 
## Run 285 stress 0.06231292 
## Run 286 stress 0.05829929 
## Run 287 stress 0.05577179 
## Run 288 stress 0.05169928 
## Run 289 stress 0.05034954 
## ... Procrustes: rmse 0.0001834025  max resid 0.000483294 
## ... Similar to previous best
## Run 290 stress 0.05034942 
## ... Procrustes: rmse 5.732908e-05  max resid 0.0001491371 
## ... Similar to previous best
## Run 291 stress 0.05049168 
## ... Procrustes: rmse 0.03580348  max resid 0.1223119 
## Run 292 stress 0.05364417 
## Run 293 stress 0.05355221 
## Run 294 stress 0.05364456 
## Run 295 stress 0.05364426 
## Run 296 stress 0.06038947 
## Run 297 stress 0.06231321 
## Run 298 stress 0.05829942 
## Run 299 stress 0.05169927 
## Run 300 stress 0.05034957 
## ... Procrustes: rmse 0.0001919883  max resid 0.0005213613 
## ... Similar to previous best
## Run 301 stress 0.06309871 
## Run 302 stress 0.05034943 
## ... Procrustes: rmse 5.438152e-05  max resid 0.0001385874 
## ... Similar to previous best
## Run 303 stress 0.06231311 
## Run 304 stress 0.05355327 
## Run 305 stress 0.05979225 
## Run 306 stress 0.05169928 
## Run 307 stress 0.05034947 
## ... Procrustes: rmse 0.0001117442  max resid 0.0002992392 
## ... Similar to previous best
## Run 308 stress 0.05034945 
## ... Procrustes: rmse 8.092452e-05  max resid 0.0002084174 
## ... Similar to previous best
## Run 309 stress 0.05364444 
## Run 310 stress 0.05440351 
## Run 311 stress 0.05332948 
## Run 312 stress 0.359257 
## Run 313 stress 0.05034942 
## ... Procrustes: rmse 2.915763e-05  max resid 8.561606e-05 
## ... Similar to previous best
## Run 314 stress 0.05829933 
## Run 315 stress 0.05034948 
## ... Procrustes: rmse 0.0001261928  max resid 0.0003292455 
## ... Similar to previous best
## Run 316 stress 0.06231288 
## Run 317 stress 0.06409519 
## Run 318 stress 0.06493684 
## Run 319 stress 0.055772 
## Run 320 stress 0.05403612 
## Run 321 stress 0.06231291 
## Run 322 stress 0.0673025 
## Run 323 stress 0.0535533 
## Run 324 stress 0.05829934 
## Run 325 stress 0.05169928 
## Run 326 stress 0.05577191 
## Run 327 stress 0.06478518 
## Run 328 stress 0.05332963 
## Run 329 stress 0.05169928 
## Run 330 stress 0.05968628 
## Run 331 stress 0.05968631 
## Run 332 stress 0.0590015 
## Run 333 stress 0.05034944 
## ... Procrustes: rmse 7.302106e-05  max resid 0.0001977675 
## ... Similar to previous best
## Run 334 stress 0.05968627 
## Run 335 stress 0.05034948 
## ... Procrustes: rmse 0.0001265339  max resid 0.0003615303 
## ... Similar to previous best
## Run 336 stress 0.05440343 
## Run 337 stress 0.06231288 
## Run 338 stress 0.05034945 
## ... Procrustes: rmse 8.395035e-05  max resid 0.000161768 
## ... Similar to previous best
## Run 339 stress 0.05364417 
## Run 340 stress 0.06943882 
## Run 341 stress 0.06231303 
## Run 342 stress 0.05440342 
## Run 343 stress 0.05034955 
## ... Procrustes: rmse 0.0001677251  max resid 0.0004543576 
## ... Similar to previous best
## Run 344 stress 0.06231299 
## Run 345 stress 0.05034942 
## ... Procrustes: rmse 4.935434e-05  max resid 0.0001268967 
## ... Similar to previous best
## Run 346 stress 0.06136674 
## Run 347 stress 0.05332955 
## Run 348 stress 0.06950975 
## Run 349 stress 0.05928228 
## Run 350 stress 0.05403583 
## Run 351 stress 0.0582993 
## Run 352 stress 0.0535529 
## Run 353 stress 0.05332971 
## Run 354 stress 0.05403557 
## Run 355 stress 0.06943847 
## Run 356 stress 0.05169927 
## Run 357 stress 0.05169927 
## Run 358 stress 0.0503495 
## ... Procrustes: rmse 0.0001392733  max resid 0.0003709324 
## ... Similar to previous best
## Run 359 stress 0.0503495 
## ... Procrustes: rmse 0.0001411781  max resid 0.0003841931 
## ... Similar to previous best
## Run 360 stress 0.0504921 
## ... Procrustes: rmse 0.03579483  max resid 0.1222759 
## Run 361 stress 0.05355236 
## Run 362 stress 0.06309853 
## Run 363 stress 0.05169927 
## Run 364 stress 0.05928219 
## Run 365 stress 0.05355226 
## Run 366 stress 0.05034954 
## ... Procrustes: rmse 0.0001632897  max resid 0.0004348286 
## ... Similar to previous best
## Run 367 stress 0.05968638 
## Run 368 stress 0.3591112 
## Run 369 stress 0.05049135 
## ... Procrustes: rmse 0.03591604  max resid 0.1226419 
## Run 370 stress 0.05169927 
## Run 371 stress 0.05440342 
## Run 372 stress 0.05034944 
## ... Procrustes: rmse 8.99932e-05  max resid 0.0002384711 
## ... Similar to previous best
## Run 373 stress 0.05928243 
## Run 374 stress 0.05034944 
## ... Procrustes: rmse 7.818153e-05  max resid 0.0002025906 
## ... Similar to previous best
## Run 375 stress 0.0592824 
## Run 376 stress 0.05034943 
## ... Procrustes: rmse 6.597434e-05  max resid 0.0001721826 
## ... Similar to previous best
## Run 377 stress 0.05577191 
## Run 378 stress 0.05829932 
## Run 379 stress 0.05403584 
## Run 380 stress 0.05364458 
## Run 381 stress 0.05034952 
## ... Procrustes: rmse 0.0001541096  max resid 0.0004488824 
## ... Similar to previous best
## Run 382 stress 0.06478514 
## Run 383 stress 0.06655704 
## Run 384 stress 0.05900152 
## Run 385 stress 0.05332951 
## Run 386 stress 0.05049245 
## ... Procrustes: rmse 0.03579583  max resid 0.1222701 
## Run 387 stress 0.05049177 
## ... Procrustes: rmse 0.03580176  max resid 0.1223046 
## Run 388 stress 0.06674571 
## Run 389 stress 0.05169928 
## Run 390 stress 0.05829934 
## Run 391 stress 0.05332967 
## Run 392 stress 0.06640368 
## Run 393 stress 0.05169929 
## Run 394 stress 0.05355223 
## Run 395 stress 0.05968633 
## Run 396 stress 0.05169928 
## Run 397 stress 0.06674555 
## Run 398 stress 0.06640335 
## Run 399 stress 0.0540357 
## Run 400 stress 0.05979234 
## Run 401 stress 0.05049136 
## ... Procrustes: rmse 0.03592818  max resid 0.1226773 
## Run 402 stress 0.05034949 
## ... Procrustes: rmse 0.0001384842  max resid 0.0003896775 
## ... Similar to previous best
## Run 403 stress 0.05034945 
## ... Procrustes: rmse 7.657799e-05  max resid 0.0002153071 
## ... Similar to previous best
## Run 404 stress 0.05355221 
## Run 405 stress 0.0504916 
## ... Procrustes: rmse 0.03580759  max resid 0.1223262 
## Run 406 stress 0.06038951 
## Run 407 stress 0.06622052 
## Run 408 stress 0.05355231 
## Run 409 stress 0.05034952 
## ... Procrustes: rmse 0.000142328  max resid 0.0003975483 
## ... Similar to previous best
## Run 410 stress 0.06362778 
## Run 411 stress 0.06896925 
## Run 412 stress 0.06231286 
## Run 413 stress 0.05364419 
## Run 414 stress 0.05332952 
## Run 415 stress 0.05968626 
## Run 416 stress 0.05928219 
## Run 417 stress 0.05829933 
## Run 418 stress 0.05968634 
## Run 419 stress 0.05829942 
## Run 420 stress 0.05034952 
## ... Procrustes: rmse 0.0001679011  max resid 0.0004477787 
## ... Similar to previous best
## Run 421 stress 0.05829928 
## Run 422 stress 0.05577179 
## Run 423 stress 0.05829937 
## Run 424 stress 0.06476223 
## Run 425 stress 0.05440343 
## Run 426 stress 0.05364436 
## Run 427 stress 0.05169932 
## Run 428 stress 0.05829929 
## Run 429 stress 0.05403578 
## Run 430 stress 0.06362796 
## Run 431 stress 0.05928233 
## Run 432 stress 0.05355228 
## Run 433 stress 0.05355223 
## Run 434 stress 0.05440345 
## Run 435 stress 0.06027427 
## Run 436 stress 0.06027426 
## Run 437 stress 0.05034941 
## ... Procrustes: rmse 3.35732e-06  max resid 7.005559e-06 
## ... Similar to previous best
## Run 438 stress 0.05034947 
## ... Procrustes: rmse 0.0001203509  max resid 0.0003422248 
## ... Similar to previous best
## Run 439 stress 0.0535522 
## Run 440 stress 0.0503495 
## ... Procrustes: rmse 0.0001385127  max resid 0.0003749967 
## ... Similar to previous best
## Run 441 stress 0.06231312 
## Run 442 stress 0.05169927 
## Run 443 stress 0.0535523 
## Run 444 stress 0.05034948 
## ... Procrustes: rmse 0.0001313839  max resid 0.0003500602 
## ... Similar to previous best
## Run 445 stress 0.0516993 
## Run 446 stress 0.06478513 
## Run 447 stress 0.06027432 
## Run 448 stress 0.06844286 
## Run 449 stress 0.05332948 
## Run 450 stress 0.05049198 
## ... Procrustes: rmse 0.03579585  max resid 0.1222823 
## Run 451 stress 0.06027451 
## Run 452 stress 0.05049187 
## ... Procrustes: rmse 0.03579767  max resid 0.1222901 
## Run 453 stress 0.05034943 
## ... Procrustes: rmse 6.099212e-05  max resid 0.000157489 
## ... Similar to previous best
## Run 454 stress 0.05829939 
## Run 455 stress 0.06704969 
## Run 456 stress 0.06640351 
## Run 457 stress 0.05049262 
## ... Procrustes: rmse 0.03579027  max resid 0.1222529 
## Run 458 stress 0.05049146 
## ... Procrustes: rmse 0.03581628  max resid 0.1223557 
## Run 459 stress 0.05049132 
## ... Procrustes: rmse 0.0359047  max resid 0.1226095 
## Run 460 stress 0.05403606 
## Run 461 stress 0.05332958 
## Run 462 stress 0.05829938 
## Run 463 stress 0.05355228 
## Run 464 stress 0.05968626 
## Run 465 stress 0.05034955 
## ... Procrustes: rmse 0.0001801883  max resid 0.0004778 
## ... Similar to previous best
## Run 466 stress 0.06630528 
## Run 467 stress 0.06111767 
## Run 468 stress 0.05049223 
## ... Procrustes: rmse 0.03578682  max resid 0.1222485 
## Run 469 stress 0.05169928 
## Run 470 stress 0.05364463 
## Run 471 stress 0.05049127 
## ... Procrustes: rmse 0.03588592  max resid 0.1225572 
## Run 472 stress 0.05034957 
## ... Procrustes: rmse 0.0001804342  max resid 0.0004860849 
## ... Similar to previous best
## Run 473 stress 0.06478525 
## Run 474 stress 0.06136683 
## Run 475 stress 0.05034944 
## ... Procrustes: rmse 7.344334e-05  max resid 0.0001583261 
## ... Similar to previous best
## Run 476 stress 0.05169927 
## Run 477 stress 0.05034953 
## ... Procrustes: rmse 0.0001666159  max resid 0.0004530465 
## ... Similar to previous best
## Run 478 stress 0.05169928 
## Run 479 stress 0.0535523 
## Run 480 stress 0.05049168 
## ... Procrustes: rmse 0.03581041  max resid 0.1223351 
## Run 481 stress 0.06038953 
## Run 482 stress 0.07104326 
## Run 483 stress 0.05034948 
## ... Procrustes: rmse 0.0001182879  max resid 0.0003155855 
## ... Similar to previous best
## Run 484 stress 0.05355239 
## Run 485 stress 0.06231302 
## Run 486 stress 0.05968638 
## Run 487 stress 0.05169928 
## Run 488 stress 0.05928261 
## Run 489 stress 0.05440343 
## Run 490 stress 0.06309837 
## Run 491 stress 0.06136679 
## Run 492 stress 0.06609072 
## Run 493 stress 0.05034944 
## ... Procrustes: rmse 3.986191e-05  max resid 9.987493e-05 
## ... Similar to previous best
## Run 494 stress 0.05169934 
## Run 495 stress 0.05332947 
## Run 496 stress 0.05049197 
## ... Procrustes: rmse 0.03579636  max resid 0.1222834 
## Run 497 stress 0.05034942 
## ... Procrustes: rmse 3.921683e-05  max resid 0.0001033313 
## ... Similar to previous best
## Run 498 stress 0.06027436 
## Run 499 stress 0.0504916 
## ... Procrustes: rmse 0.03579077  max resid 0.1222781 
## Run 500 stress 0.05049129 
## ... Procrustes: rmse 0.03589046  max resid 0.1225692 
## *** Best solution repeated 69 times
# Ocean sites and mixed lakes
pdom_NMDS <- metaMDS(pdom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.1004721 
## Run 1 stress 0.1004721 
## ... New best solution
## ... Procrustes: rmse 1.371069e-06  max resid 3.451741e-06 
## ... Similar to previous best
## Run 2 stress 0.1004721 
## ... Procrustes: rmse 2.745198e-06  max resid 7.001458e-06 
## ... Similar to previous best
## Run 3 stress 0.1004721 
## ... Procrustes: rmse 2.280855e-06  max resid 5.904657e-06 
## ... Similar to previous best
## Run 4 stress 0.1524179 
## Run 5 stress 0.1004721 
## ... Procrustes: rmse 4.393051e-06  max resid 1.252852e-05 
## ... Similar to previous best
## Run 6 stress 0.1004721 
## ... Procrustes: rmse 3.770682e-06  max resid 7.920987e-06 
## ... Similar to previous best
## Run 7 stress 0.1004721 
## ... Procrustes: rmse 3.050485e-06  max resid 9.072242e-06 
## ... Similar to previous best
## Run 8 stress 0.1004721 
## ... New best solution
## ... Procrustes: rmse 7.940575e-07  max resid 1.532408e-06 
## ... Similar to previous best
## Run 9 stress 0.1004721 
## ... Procrustes: rmse 2.840354e-06  max resid 5.750285e-06 
## ... Similar to previous best
## Run 10 stress 0.1429816 
## Run 11 stress 0.1512115 
## Run 12 stress 0.1004721 
## ... Procrustes: rmse 3.624327e-06  max resid 1.005685e-05 
## ... Similar to previous best
## Run 13 stress 0.1004721 
## ... Procrustes: rmse 1.986407e-06  max resid 5.393094e-06 
## ... Similar to previous best
## Run 14 stress 0.1004721 
## ... Procrustes: rmse 6.300667e-07  max resid 1.548665e-06 
## ... Similar to previous best
## Run 15 stress 0.1427047 
## Run 16 stress 0.1004721 
## ... Procrustes: rmse 1.931637e-06  max resid 5.318162e-06 
## ... Similar to previous best
## Run 17 stress 0.1427047 
## Run 18 stress 0.1004721 
## ... Procrustes: rmse 1.699764e-05  max resid 4.791554e-05 
## ... Similar to previous best
## Run 19 stress 0.1004721 
## ... Procrustes: rmse 5.496431e-07  max resid 1.263723e-06 
## ... Similar to previous best
## Run 20 stress 0.1429817 
## Run 21 stress 0.31278 
## Run 22 stress 0.1427047 
## Run 23 stress 0.1429816 
## Run 24 stress 0.1004721 
## ... Procrustes: rmse 4.084679e-06  max resid 1.17892e-05 
## ... Similar to previous best
## Run 25 stress 0.1429819 
## Run 26 stress 0.1429817 
## Run 27 stress 0.1429817 
## Run 28 stress 0.1004721 
## ... Procrustes: rmse 1.429042e-05  max resid 4.101681e-05 
## ... Similar to previous best
## Run 29 stress 0.1004721 
## ... Procrustes: rmse 3.342241e-06  max resid 9.497197e-06 
## ... Similar to previous best
## Run 30 stress 0.1004721 
## ... Procrustes: rmse 1.008077e-06  max resid 2.209778e-06 
## ... Similar to previous best
## Run 31 stress 0.1004721 
## ... Procrustes: rmse 2.056719e-06  max resid 4.707582e-06 
## ... Similar to previous best
## Run 32 stress 0.1427047 
## Run 33 stress 0.1427047 
## Run 34 stress 0.152418 
## Run 35 stress 0.1004721 
## ... Procrustes: rmse 3.937366e-06  max resid 7.198502e-06 
## ... Similar to previous best
## Run 36 stress 0.1004721 
## ... Procrustes: rmse 6.50016e-06  max resid 1.842562e-05 
## ... Similar to previous best
## Run 37 stress 0.1512114 
## Run 38 stress 0.1004721 
## ... Procrustes: rmse 2.408999e-06  max resid 4.958766e-06 
## ... Similar to previous best
## Run 39 stress 0.1004721 
## ... Procrustes: rmse 2.078947e-06  max resid 4.873866e-06 
## ... Similar to previous best
## Run 40 stress 0.1004721 
## ... New best solution
## ... Procrustes: rmse 2.819432e-07  max resid 5.825097e-07 
## ... Similar to previous best
## Run 41 stress 0.1427047 
## Run 42 stress 0.1004721 
## ... Procrustes: rmse 7.641302e-06  max resid 2.097163e-05 
## ... Similar to previous best
## Run 43 stress 0.1004721 
## ... Procrustes: rmse 1.825069e-06  max resid 4.132303e-06 
## ... Similar to previous best
## Run 44 stress 0.3578478 
## Run 45 stress 0.1004721 
## ... Procrustes: rmse 2.383723e-06  max resid 5.309489e-06 
## ... Similar to previous best
## Run 46 stress 0.1004721 
## ... Procrustes: rmse 3.532579e-06  max resid 9.928748e-06 
## ... Similar to previous best
## Run 47 stress 0.1427047 
## Run 48 stress 0.1004721 
## ... Procrustes: rmse 3.211127e-06  max resid 8.681302e-06 
## ... Similar to previous best
## Run 49 stress 0.1429816 
## Run 50 stress 0.1004721 
## ... Procrustes: rmse 3.61647e-06  max resid 1.01784e-05 
## ... Similar to previous best
## Run 51 stress 0.1429819 
## Run 52 stress 0.1004721 
## ... New best solution
## ... Procrustes: rmse 1.237687e-06  max resid 3.480224e-06 
## ... Similar to previous best
## Run 53 stress 0.1004721 
## ... Procrustes: rmse 9.500415e-06  max resid 2.67487e-05 
## ... Similar to previous best
## Run 54 stress 0.1004721 
## ... Procrustes: rmse 3.161204e-06  max resid 8.972938e-06 
## ... Similar to previous best
## Run 55 stress 0.1004721 
## ... Procrustes: rmse 6.839594e-07  max resid 1.689962e-06 
## ... Similar to previous best
## Run 56 stress 0.1427047 
## Run 57 stress 0.1004721 
## ... Procrustes: rmse 4.407486e-06  max resid 1.211983e-05 
## ... Similar to previous best
## Run 58 stress 0.1427047 
## Run 59 stress 0.1004721 
## ... Procrustes: rmse 1.796656e-06  max resid 5.094202e-06 
## ... Similar to previous best
## Run 60 stress 0.1004721 
## ... Procrustes: rmse 5.069693e-06  max resid 1.382863e-05 
## ... Similar to previous best
## Run 61 stress 0.1429818 
## Run 62 stress 0.1004721 
## ... Procrustes: rmse 3.529518e-06  max resid 8.906686e-06 
## ... Similar to previous best
## Run 63 stress 0.1004721 
## ... Procrustes: rmse 5.834074e-06  max resid 1.643692e-05 
## ... Similar to previous best
## Run 64 stress 0.1004721 
## ... Procrustes: rmse 4.29605e-06  max resid 1.203061e-05 
## ... Similar to previous best
## Run 65 stress 0.1004721 
## ... Procrustes: rmse 2.450324e-06  max resid 6.640265e-06 
## ... Similar to previous best
## Run 66 stress 0.1427047 
## Run 67 stress 0.1004721 
## ... Procrustes: rmse 2.467317e-06  max resid 6.233374e-06 
## ... Similar to previous best
## Run 68 stress 0.1004721 
## ... Procrustes: rmse 4.319002e-06  max resid 1.175692e-05 
## ... Similar to previous best
## Run 69 stress 0.1524177 
## Run 70 stress 0.1004721 
## ... Procrustes: rmse 1.097525e-06  max resid 2.149795e-06 
## ... Similar to previous best
## Run 71 stress 0.1429816 
## Run 72 stress 0.1429816 
## Run 73 stress 0.3495564 
## Run 74 stress 0.1004721 
## ... Procrustes: rmse 2.069917e-06  max resid 5.590556e-06 
## ... Similar to previous best
## Run 75 stress 0.1004721 
## ... Procrustes: rmse 1.517109e-06  max resid 3.7189e-06 
## ... Similar to previous best
## Run 76 stress 0.1004721 
## ... Procrustes: rmse 1.012862e-05  max resid 2.783675e-05 
## ... Similar to previous best
## Run 77 stress 0.1004721 
## ... Procrustes: rmse 3.45892e-06  max resid 9.88289e-06 
## ... Similar to previous best
## Run 78 stress 0.1004721 
## ... Procrustes: rmse 9.590145e-07  max resid 2.542332e-06 
## ... Similar to previous best
## Run 79 stress 0.1429819 
## Run 80 stress 0.1004721 
## ... Procrustes: rmse 3.942861e-06  max resid 9.676931e-06 
## ... Similar to previous best
## Run 81 stress 0.1004721 
## ... Procrustes: rmse 2.743332e-06  max resid 7.322949e-06 
## ... Similar to previous best
## Run 82 stress 0.1427047 
## Run 83 stress 0.1429817 
## Run 84 stress 0.1004721 
## ... Procrustes: rmse 3.28625e-06  max resid 9.274612e-06 
## ... Similar to previous best
## Run 85 stress 0.1524177 
## Run 86 stress 0.1004721 
## ... Procrustes: rmse 1.48117e-06  max resid 3.924497e-06 
## ... Similar to previous best
## Run 87 stress 0.1512114 
## Run 88 stress 0.1004721 
## ... Procrustes: rmse 1.741948e-06  max resid 4.894222e-06 
## ... Similar to previous best
## Run 89 stress 0.1524178 
## Run 90 stress 0.1004721 
## ... Procrustes: rmse 6.808467e-06  max resid 1.917751e-05 
## ... Similar to previous best
## Run 91 stress 0.1004721 
## ... Procrustes: rmse 1.632724e-06  max resid 3.513423e-06 
## ... Similar to previous best
## Run 92 stress 0.1004721 
## ... Procrustes: rmse 6.967722e-06  max resid 1.879758e-05 
## ... Similar to previous best
## Run 93 stress 0.1004721 
## ... Procrustes: rmse 1.054822e-06  max resid 2.084007e-06 
## ... Similar to previous best
## Run 94 stress 0.1004721 
## ... Procrustes: rmse 2.715822e-06  max resid 7.640119e-06 
## ... Similar to previous best
## Run 95 stress 0.1429819 
## Run 96 stress 0.1429817 
## Run 97 stress 0.1004721 
## ... Procrustes: rmse 1.15717e-05  max resid 3.232902e-05 
## ... Similar to previous best
## Run 98 stress 0.1004721 
## ... Procrustes: rmse 1.774275e-06  max resid 4.704522e-06 
## ... Similar to previous best
## Run 99 stress 0.1004721 
## ... Procrustes: rmse 2.494462e-06  max resid 7.045316e-06 
## ... Similar to previous best
## Run 100 stress 0.1004721 
## ... Procrustes: rmse 2.758196e-06  max resid 6.482562e-06 
## ... Similar to previous best
## Run 101 stress 0.1004721 
## ... Procrustes: rmse 1.468761e-06  max resid 3.026613e-06 
## ... Similar to previous best
## Run 102 stress 0.1004721 
## ... Procrustes: rmse 1.116572e-06  max resid 2.952466e-06 
## ... Similar to previous best
## Run 103 stress 0.1004721 
## ... Procrustes: rmse 2.464439e-06  max resid 6.835892e-06 
## ... Similar to previous best
## Run 104 stress 0.1004721 
## ... Procrustes: rmse 1.671214e-06  max resid 3.436728e-06 
## ... Similar to previous best
## Run 105 stress 0.1004721 
## ... Procrustes: rmse 3.400087e-06  max resid 9.640243e-06 
## ... Similar to previous best
## Run 106 stress 0.1004721 
## ... Procrustes: rmse 4.35805e-06  max resid 1.226789e-05 
## ... Similar to previous best
## Run 107 stress 0.1004721 
## ... Procrustes: rmse 4.219863e-06  max resid 1.194594e-05 
## ... Similar to previous best
## Run 108 stress 0.1427047 
## Run 109 stress 0.1004721 
## ... Procrustes: rmse 9.510263e-07  max resid 2.013971e-06 
## ... Similar to previous best
## Run 110 stress 0.1004721 
## ... Procrustes: rmse 3.885009e-06  max resid 1.099661e-05 
## ... Similar to previous best
## Run 111 stress 0.1004721 
## ... Procrustes: rmse 3.448719e-07  max resid 6.738636e-07 
## ... Similar to previous best
## Run 112 stress 0.1004722 
## ... Procrustes: rmse 1.288237e-05  max resid 3.0506e-05 
## ... Similar to previous best
## Run 113 stress 0.1427047 
## Run 114 stress 0.1004721 
## ... Procrustes: rmse 1.763889e-06  max resid 4.964048e-06 
## ... Similar to previous best
## Run 115 stress 0.1004722 
## ... Procrustes: rmse 9.762645e-06  max resid 2.269809e-05 
## ... Similar to previous best
## Run 116 stress 0.3495734 
## Run 117 stress 0.1532428 
## Run 118 stress 0.1004721 
## ... Procrustes: rmse 1.05163e-06  max resid 2.610307e-06 
## ... Similar to previous best
## Run 119 stress 0.1427047 
## Run 120 stress 0.1004721 
## ... Procrustes: rmse 1.141692e-05  max resid 2.915839e-05 
## ... Similar to previous best
## Run 121 stress 0.1427047 
## Run 122 stress 0.1427047 
## Run 123 stress 0.1512113 
## Run 124 stress 0.1004721 
## ... Procrustes: rmse 2.647667e-06  max resid 7.418653e-06 
## ... Similar to previous best
## Run 125 stress 0.1004721 
## ... Procrustes: rmse 3.233557e-06  max resid 9.132302e-06 
## ... Similar to previous best
## Run 126 stress 0.1004721 
## ... Procrustes: rmse 4.081257e-06  max resid 1.176805e-05 
## ... Similar to previous best
## Run 127 stress 0.1004721 
## ... Procrustes: rmse 4.290723e-06  max resid 1.054698e-05 
## ... Similar to previous best
## Run 128 stress 0.1427047 
## Run 129 stress 0.1429816 
## Run 130 stress 0.1004721 
## ... Procrustes: rmse 4.394181e-06  max resid 1.097316e-05 
## ... Similar to previous best
## Run 131 stress 0.1004721 
## ... New best solution
## ... Procrustes: rmse 6.754423e-07  max resid 1.533606e-06 
## ... Similar to previous best
## Run 132 stress 0.1004721 
## ... Procrustes: rmse 1.594265e-06  max resid 4.500062e-06 
## ... Similar to previous best
## Run 133 stress 0.3315178 
## Run 134 stress 0.1004721 
## ... Procrustes: rmse 2.703941e-06  max resid 7.518841e-06 
## ... Similar to previous best
## Run 135 stress 0.1004721 
## ... Procrustes: rmse 1.512767e-05  max resid 4.316804e-05 
## ... Similar to previous best
## Run 136 stress 0.1004721 
## ... Procrustes: rmse 2.143563e-06  max resid 5.886353e-06 
## ... Similar to previous best
## Run 137 stress 0.1004721 
## ... Procrustes: rmse 3.170207e-06  max resid 6.708987e-06 
## ... Similar to previous best
## Run 138 stress 0.1004721 
## ... Procrustes: rmse 6.51593e-06  max resid 1.817397e-05 
## ... Similar to previous best
## Run 139 stress 0.1004721 
## ... Procrustes: rmse 4.05091e-06  max resid 1.146363e-05 
## ... Similar to previous best
## Run 140 stress 0.1004721 
## ... Procrustes: rmse 1.754707e-06  max resid 3.858254e-06 
## ... Similar to previous best
## Run 141 stress 0.1004721 
## ... Procrustes: rmse 1.163525e-06  max resid 3.081634e-06 
## ... Similar to previous best
## Run 142 stress 0.1004721 
## ... Procrustes: rmse 7.996281e-06  max resid 2.259252e-05 
## ... Similar to previous best
## Run 143 stress 0.1429816 
## Run 144 stress 0.1004721 
## ... Procrustes: rmse 8.017106e-07  max resid 1.425652e-06 
## ... Similar to previous best
## Run 145 stress 0.1004721 
## ... Procrustes: rmse 1.170802e-06  max resid 2.105504e-06 
## ... Similar to previous best
## Run 146 stress 0.1004721 
## ... Procrustes: rmse 2.123111e-05  max resid 6.070214e-05 
## ... Similar to previous best
## Run 147 stress 0.1427047 
## Run 148 stress 0.1004721 
## ... Procrustes: rmse 1.91512e-06  max resid 5.073104e-06 
## ... Similar to previous best
## Run 149 stress 0.1004721 
## ... Procrustes: rmse 1.971399e-06  max resid 5.459595e-06 
## ... Similar to previous best
## Run 150 stress 0.1004721 
## ... Procrustes: rmse 1.587845e-06  max resid 3.691226e-06 
## ... Similar to previous best
## Run 151 stress 0.1004722 
## ... Procrustes: rmse 2.65528e-05  max resid 7.526046e-05 
## ... Similar to previous best
## Run 152 stress 0.1004721 
## ... Procrustes: rmse 3.512832e-06  max resid 7.212842e-06 
## ... Similar to previous best
## Run 153 stress 0.1429818 
## Run 154 stress 0.1004721 
## ... Procrustes: rmse 1.239365e-06  max resid 3.125938e-06 
## ... Similar to previous best
## Run 155 stress 0.1512113 
## Run 156 stress 0.1429819 
## Run 157 stress 0.1429816 
## Run 158 stress 0.1004721 
## ... Procrustes: rmse 5.762943e-06  max resid 1.256513e-05 
## ... Similar to previous best
## Run 159 stress 0.1004721 
## ... Procrustes: rmse 2.976904e-06  max resid 6.891116e-06 
## ... Similar to previous best
## Run 160 stress 0.1004721 
## ... Procrustes: rmse 4.875992e-06  max resid 1.359373e-05 
## ... Similar to previous best
## Run 161 stress 0.1004721 
## ... Procrustes: rmse 3.467948e-06  max resid 8.625877e-06 
## ... Similar to previous best
## Run 162 stress 0.1004721 
## ... Procrustes: rmse 3.851751e-06  max resid 1.075266e-05 
## ... Similar to previous best
## Run 163 stress 0.3471818 
## Run 164 stress 0.1004721 
## ... Procrustes: rmse 1.348693e-06  max resid 3.095088e-06 
## ... Similar to previous best
## Run 165 stress 0.1524178 
## Run 166 stress 0.1004721 
## ... Procrustes: rmse 5.312554e-06  max resid 1.465009e-05 
## ... Similar to previous best
## Run 167 stress 0.1427047 
## Run 168 stress 0.1004721 
## ... Procrustes: rmse 2.400491e-06  max resid 6.489689e-06 
## ... Similar to previous best
## Run 169 stress 0.1429816 
## Run 170 stress 0.1004721 
## ... Procrustes: rmse 1.100476e-06  max resid 2.389831e-06 
## ... Similar to previous best
## Run 171 stress 0.1004721 
## ... Procrustes: rmse 3.453413e-06  max resid 8.922668e-06 
## ... Similar to previous best
## Run 172 stress 0.1004721 
## ... Procrustes: rmse 1.151302e-06  max resid 2.941649e-06 
## ... Similar to previous best
## Run 173 stress 0.1004721 
## ... Procrustes: rmse 5.554261e-06  max resid 1.548007e-05 
## ... Similar to previous best
## Run 174 stress 0.1524176 
## Run 175 stress 0.1004721 
## ... Procrustes: rmse 3.799531e-06  max resid 9.389909e-06 
## ... Similar to previous best
## Run 176 stress 0.1004721 
## ... Procrustes: rmse 9.235203e-06  max resid 2.63046e-05 
## ... Similar to previous best
## Run 177 stress 0.1004721 
## ... Procrustes: rmse 1.742139e-06  max resid 3.575223e-06 
## ... Similar to previous best
## Run 178 stress 0.1524796 
## Run 179 stress 0.1004721 
## ... Procrustes: rmse 1.417144e-06  max resid 3.405753e-06 
## ... Similar to previous best
## Run 180 stress 0.1004721 
## ... Procrustes: rmse 4.466822e-06  max resid 1.269447e-05 
## ... Similar to previous best
## Run 181 stress 0.1429816 
## Run 182 stress 0.1004721 
## ... Procrustes: rmse 3.537487e-06  max resid 9.959901e-06 
## ... Similar to previous best
## Run 183 stress 0.1427047 
## Run 184 stress 0.1004721 
## ... Procrustes: rmse 4.027508e-06  max resid 9.966438e-06 
## ... Similar to previous best
## Run 185 stress 0.1004721 
## ... Procrustes: rmse 2.021523e-06  max resid 4.782067e-06 
## ... Similar to previous best
## Run 186 stress 0.1004721 
## ... Procrustes: rmse 3.474069e-06  max resid 9.726645e-06 
## ... Similar to previous best
## Run 187 stress 0.1427047 
## Run 188 stress 0.1004721 
## ... Procrustes: rmse 8.999663e-07  max resid 2.305724e-06 
## ... Similar to previous best
## Run 189 stress 0.1004721 
## ... Procrustes: rmse 3.045138e-06  max resid 8.411433e-06 
## ... Similar to previous best
## Run 190 stress 0.1004721 
## ... Procrustes: rmse 1.394854e-06  max resid 2.743348e-06 
## ... Similar to previous best
## Run 191 stress 0.1004721 
## ... Procrustes: rmse 1.140969e-05  max resid 3.192817e-05 
## ... Similar to previous best
## Run 192 stress 0.1004721 
## ... Procrustes: rmse 2.036983e-06  max resid 3.976334e-06 
## ... Similar to previous best
## Run 193 stress 0.1004721 
## ... Procrustes: rmse 1.487096e-06  max resid 3.218815e-06 
## ... Similar to previous best
## Run 194 stress 0.1004721 
## ... Procrustes: rmse 3.808664e-06  max resid 9.383533e-06 
## ... Similar to previous best
## Run 195 stress 0.1004721 
## ... Procrustes: rmse 1.300109e-06  max resid 3.40879e-06 
## ... Similar to previous best
## Run 196 stress 0.1004721 
## ... Procrustes: rmse 5.23411e-06  max resid 1.463071e-05 
## ... Similar to previous best
## Run 197 stress 0.1004721 
## ... Procrustes: rmse 3.326992e-06  max resid 7.007443e-06 
## ... Similar to previous best
## Run 198 stress 0.3151877 
## Run 199 stress 0.1004721 
## ... Procrustes: rmse 1.346369e-06  max resid 3.552618e-06 
## ... Similar to previous best
## Run 200 stress 0.1004721 
## ... Procrustes: rmse 4.108909e-06  max resid 1.129125e-05 
## ... Similar to previous best
## Run 201 stress 0.1004721 
## ... Procrustes: rmse 4.317843e-06  max resid 1.108299e-05 
## ... Similar to previous best
## Run 202 stress 0.1004721 
## ... Procrustes: rmse 5.406639e-06  max resid 1.522567e-05 
## ... Similar to previous best
## Run 203 stress 0.1004721 
## ... Procrustes: rmse 2.497296e-06  max resid 7.063309e-06 
## ... Similar to previous best
## Run 204 stress 0.1004721 
## ... Procrustes: rmse 1.119515e-06  max resid 1.943808e-06 
## ... Similar to previous best
## Run 205 stress 0.1004721 
## ... Procrustes: rmse 1.119969e-06  max resid 2.892787e-06 
## ... Similar to previous best
## Run 206 stress 0.1532429 
## Run 207 stress 0.1429818 
## Run 208 stress 0.1429815 
## Run 209 stress 0.1004721 
## ... Procrustes: rmse 4.505876e-06  max resid 1.160799e-05 
## ... Similar to previous best
## Run 210 stress 0.1004721 
## ... Procrustes: rmse 3.859953e-06  max resid 1.061342e-05 
## ... Similar to previous best
## Run 211 stress 0.1512113 
## Run 212 stress 0.1524176 
## Run 213 stress 0.1004721 
## ... Procrustes: rmse 7.899222e-07  max resid 1.985794e-06 
## ... Similar to previous best
## Run 214 stress 0.1004721 
## ... Procrustes: rmse 9.626378e-07  max resid 2.13927e-06 
## ... Similar to previous best
## Run 215 stress 0.1004721 
## ... Procrustes: rmse 3.812162e-06  max resid 1.062899e-05 
## ... Similar to previous best
## Run 216 stress 0.1427047 
## Run 217 stress 0.1004721 
## ... Procrustes: rmse 2.078214e-06  max resid 5.203776e-06 
## ... Similar to previous best
## Run 218 stress 0.1004721 
## ... Procrustes: rmse 2.143989e-06  max resid 5.968047e-06 
## ... Similar to previous best
## Run 219 stress 0.1004721 
## ... Procrustes: rmse 9.128449e-07  max resid 1.776072e-06 
## ... Similar to previous best
## Run 220 stress 0.1004721 
## ... Procrustes: rmse 2.930762e-06  max resid 6.505583e-06 
## ... Similar to previous best
## Run 221 stress 0.1429818 
## Run 222 stress 0.1429816 
## Run 223 stress 0.1004721 
## ... Procrustes: rmse 1.39145e-06  max resid 3.731509e-06 
## ... Similar to previous best
## Run 224 stress 0.1004721 
## ... Procrustes: rmse 4.466563e-06  max resid 1.234418e-05 
## ... Similar to previous best
## Run 225 stress 0.1004721 
## ... Procrustes: rmse 2.769363e-06  max resid 7.378193e-06 
## ... Similar to previous best
## Run 226 stress 0.1004721 
## ... Procrustes: rmse 8.938139e-06  max resid 2.534035e-05 
## ... Similar to previous best
## Run 227 stress 0.1004721 
## ... Procrustes: rmse 2.560514e-06  max resid 5.59505e-06 
## ... Similar to previous best
## Run 228 stress 0.1429819 
## Run 229 stress 0.1004721 
## ... Procrustes: rmse 1.986998e-06  max resid 5.524016e-06 
## ... Similar to previous best
## Run 230 stress 0.1004721 
## ... Procrustes: rmse 3.286378e-06  max resid 8.013039e-06 
## ... Similar to previous best
## Run 231 stress 0.1429818 
## Run 232 stress 0.1004721 
## ... Procrustes: rmse 2.540031e-06  max resid 6.5718e-06 
## ... Similar to previous best
## Run 233 stress 0.3578483 
## Run 234 stress 0.1004721 
## ... Procrustes: rmse 2.196266e-06  max resid 6.044588e-06 
## ... Similar to previous best
## Run 235 stress 0.1004721 
## ... Procrustes: rmse 4.637412e-06  max resid 1.057479e-05 
## ... Similar to previous best
## Run 236 stress 0.1004721 
## ... Procrustes: rmse 1.646586e-06  max resid 4.176077e-06 
## ... Similar to previous best
## Run 237 stress 0.1004721 
## ... Procrustes: rmse 2.033184e-06  max resid 5.560107e-06 
## ... Similar to previous best
## Run 238 stress 0.1004721 
## ... Procrustes: rmse 1.683238e-06  max resid 4.034825e-06 
## ... Similar to previous best
## Run 239 stress 0.1532428 
## Run 240 stress 0.1004721 
## ... Procrustes: rmse 2.559473e-06  max resid 6.491822e-06 
## ... Similar to previous best
## Run 241 stress 0.142982 
## Run 242 stress 0.1524176 
## Run 243 stress 0.1004721 
## ... Procrustes: rmse 2.170362e-06  max resid 4.878143e-06 
## ... Similar to previous best
## Run 244 stress 0.1004721 
## ... Procrustes: rmse 3.199517e-06  max resid 8.953741e-06 
## ... Similar to previous best
## Run 245 stress 0.3108666 
## Run 246 stress 0.1004721 
## ... Procrustes: rmse 1.82256e-06  max resid 4.839727e-06 
## ... Similar to previous best
## Run 247 stress 0.1004721 
## ... Procrustes: rmse 3.937562e-06  max resid 1.075073e-05 
## ... Similar to previous best
## Run 248 stress 0.1004721 
## ... Procrustes: rmse 2.67833e-06  max resid 7.334719e-06 
## ... Similar to previous best
## Run 249 stress 0.1004721 
## ... Procrustes: rmse 3.344266e-06  max resid 9.44321e-06 
## ... Similar to previous best
## Run 250 stress 0.1004721 
## ... Procrustes: rmse 8.455764e-07  max resid 1.590289e-06 
## ... Similar to previous best
## Run 251 stress 0.1004721 
## ... Procrustes: rmse 1.860571e-06  max resid 3.891127e-06 
## ... Similar to previous best
## Run 252 stress 0.1512113 
## Run 253 stress 0.1004721 
## ... Procrustes: rmse 2.101437e-06  max resid 5.011565e-06 
## ... Similar to previous best
## Run 254 stress 0.1004721 
## ... Procrustes: rmse 9.460898e-06  max resid 2.710399e-05 
## ... Similar to previous best
## Run 255 stress 0.1429818 
## Run 256 stress 0.1429822 
## Run 257 stress 0.1524796 
## Run 258 stress 0.1429815 
## Run 259 stress 0.1512113 
## Run 260 stress 0.1004721 
## ... Procrustes: rmse 9.184829e-07  max resid 2.231773e-06 
## ... Similar to previous best
## Run 261 stress 0.1004721 
## ... Procrustes: rmse 2.056063e-06  max resid 4.549275e-06 
## ... Similar to previous best
## Run 262 stress 0.1004721 
## ... Procrustes: rmse 3.959906e-06  max resid 9.658973e-06 
## ... Similar to previous best
## Run 263 stress 0.1004721 
## ... Procrustes: rmse 1.634511e-06  max resid 4.32393e-06 
## ... Similar to previous best
## Run 264 stress 0.1004721 
## ... Procrustes: rmse 1.807894e-06  max resid 5.042819e-06 
## ... Similar to previous best
## Run 265 stress 0.1004721 
## ... Procrustes: rmse 1.866486e-06  max resid 4.77252e-06 
## ... Similar to previous best
## Run 266 stress 0.1429819 
## Run 267 stress 0.1004721 
## ... New best solution
## ... Procrustes: rmse 4.02686e-07  max resid 7.447426e-07 
## ... Similar to previous best
## Run 268 stress 0.1429818 
## Run 269 stress 0.1429819 
## Run 270 stress 0.1429822 
## Run 271 stress 0.1004721 
## ... Procrustes: rmse 9.35778e-07  max resid 1.975415e-06 
## ... Similar to previous best
## Run 272 stress 0.1004721 
## ... Procrustes: rmse 2.601327e-06  max resid 7.392125e-06 
## ... Similar to previous best
## Run 273 stress 0.1427047 
## Run 274 stress 0.1427047 
## Run 275 stress 0.1004721 
## ... Procrustes: rmse 2.616101e-06  max resid 5.412738e-06 
## ... Similar to previous best
## Run 276 stress 0.1427047 
## Run 277 stress 0.1429816 
## Run 278 stress 0.1004721 
## ... Procrustes: rmse 3.938095e-06  max resid 1.124817e-05 
## ... Similar to previous best
## Run 279 stress 0.1004721 
## ... Procrustes: rmse 2.95371e-06  max resid 7.365773e-06 
## ... Similar to previous best
## Run 280 stress 0.1004721 
## ... Procrustes: rmse 6.182122e-07  max resid 1.299736e-06 
## ... Similar to previous best
## Run 281 stress 0.1004721 
## ... Procrustes: rmse 3.729907e-06  max resid 1.062813e-05 
## ... Similar to previous best
## Run 282 stress 0.1004721 
## ... Procrustes: rmse 3.16072e-06  max resid 8.909175e-06 
## ... Similar to previous best
## Run 283 stress 0.1004721 
## ... Procrustes: rmse 3.140448e-06  max resid 8.968182e-06 
## ... Similar to previous best
## Run 284 stress 0.1004721 
## ... Procrustes: rmse 3.315871e-06  max resid 7.14524e-06 
## ... Similar to previous best
## Run 285 stress 0.1512113 
## Run 286 stress 0.1004721 
## ... Procrustes: rmse 1.636489e-06  max resid 3.412304e-06 
## ... Similar to previous best
## Run 287 stress 0.1004721 
## ... Procrustes: rmse 1.767913e-06  max resid 4.665704e-06 
## ... Similar to previous best
## Run 288 stress 0.1004721 
## ... Procrustes: rmse 1.860076e-06  max resid 4.623625e-06 
## ... Similar to previous best
## Run 289 stress 0.1004721 
## ... Procrustes: rmse 4.162154e-06  max resid 9.435159e-06 
## ... Similar to previous best
## Run 290 stress 0.1004721 
## ... Procrustes: rmse 1.925943e-06  max resid 5.388943e-06 
## ... Similar to previous best
## Run 291 stress 0.1004721 
## ... Procrustes: rmse 2.66358e-06  max resid 5.699042e-06 
## ... Similar to previous best
## Run 292 stress 0.1004721 
## ... Procrustes: rmse 2.991769e-06  max resid 7.444095e-06 
## ... Similar to previous best
## Run 293 stress 0.1004721 
## ... Procrustes: rmse 3.683871e-06  max resid 1.040705e-05 
## ... Similar to previous best
## Run 294 stress 0.152418 
## Run 295 stress 0.1004721 
## ... Procrustes: rmse 3.872181e-06  max resid 9.842289e-06 
## ... Similar to previous best
## Run 296 stress 0.1004721 
## ... Procrustes: rmse 2.304644e-06  max resid 6.500661e-06 
## ... Similar to previous best
## Run 297 stress 0.1004721 
## ... Procrustes: rmse 9.150402e-07  max resid 1.788771e-06 
## ... Similar to previous best
## Run 298 stress 0.1004721 
## ... Procrustes: rmse 1.87056e-06  max resid 5.353006e-06 
## ... Similar to previous best
## Run 299 stress 0.1004721 
## ... Procrustes: rmse 3.565105e-06  max resid 9.999709e-06 
## ... Similar to previous best
## Run 300 stress 0.1512113 
## Run 301 stress 0.1004721 
## ... Procrustes: rmse 1.693622e-06  max resid 4.670218e-06 
## ... Similar to previous best
## Run 302 stress 0.1427047 
## Run 303 stress 0.1004721 
## ... Procrustes: rmse 4.099932e-06  max resid 1.12221e-05 
## ... Similar to previous best
## Run 304 stress 0.1524178 
## Run 305 stress 0.1004721 
## ... Procrustes: rmse 2.707179e-06  max resid 7.383583e-06 
## ... Similar to previous best
## Run 306 stress 0.1004721 
## ... Procrustes: rmse 1.166465e-06  max resid 3.28232e-06 
## ... Similar to previous best
## Run 307 stress 0.1004721 
## ... Procrustes: rmse 3.505657e-06  max resid 7.587234e-06 
## ... Similar to previous best
## Run 308 stress 0.1427047 
## Run 309 stress 0.1512115 
## Run 310 stress 0.1427047 
## Run 311 stress 0.1004721 
## ... Procrustes: rmse 2.477491e-06  max resid 6.131224e-06 
## ... Similar to previous best
## Run 312 stress 0.152418 
## Run 313 stress 0.1004721 
## ... Procrustes: rmse 3.250164e-06  max resid 7.711477e-06 
## ... Similar to previous best
## Run 314 stress 0.1524175 
## Run 315 stress 0.1532428 
## Run 316 stress 0.1004721 
## ... Procrustes: rmse 6.427578e-06  max resid 1.83481e-05 
## ... Similar to previous best
## Run 317 stress 0.1429818 
## Run 318 stress 0.1004721 
## ... Procrustes: rmse 4.553945e-06  max resid 1.27671e-05 
## ... Similar to previous best
## Run 319 stress 0.1004721 
## ... Procrustes: rmse 1.374841e-06  max resid 2.368964e-06 
## ... Similar to previous best
## Run 320 stress 0.1004721 
## ... Procrustes: rmse 2.783915e-06  max resid 7.115811e-06 
## ... Similar to previous best
## Run 321 stress 0.1004721 
## ... Procrustes: rmse 1.030025e-05  max resid 2.871901e-05 
## ... Similar to previous best
## Run 322 stress 0.1004721 
## ... Procrustes: rmse 2.212333e-06  max resid 5.160446e-06 
## ... Similar to previous best
## Run 323 stress 0.1004721 
## ... Procrustes: rmse 1.078559e-05  max resid 3.019283e-05 
## ... Similar to previous best
## Run 324 stress 0.1532428 
## Run 325 stress 0.1004721 
## ... Procrustes: rmse 1.409997e-06  max resid 3.410134e-06 
## ... Similar to previous best
## Run 326 stress 0.1004721 
## ... Procrustes: rmse 3.851047e-06  max resid 1.099577e-05 
## ... Similar to previous best
## Run 327 stress 0.1004721 
## ... Procrustes: rmse 4.337918e-06  max resid 1.214426e-05 
## ... Similar to previous best
## Run 328 stress 0.1004721 
## ... Procrustes: rmse 3.803445e-06  max resid 1.079418e-05 
## ... Similar to previous best
## Run 329 stress 0.1004721 
## ... Procrustes: rmse 1.480034e-06  max resid 3.760446e-06 
## ... Similar to previous best
## Run 330 stress 0.1429819 
## Run 331 stress 0.1004721 
## ... Procrustes: rmse 3.129837e-06  max resid 8.877329e-06 
## ... Similar to previous best
## Run 332 stress 0.1427047 
## Run 333 stress 0.1427047 
## Run 334 stress 0.1004721 
## ... Procrustes: rmse 1.210307e-06  max resid 2.708882e-06 
## ... Similar to previous best
## Run 335 stress 0.1427047 
## Run 336 stress 0.1429816 
## Run 337 stress 0.1427047 
## Run 338 stress 0.1004721 
## ... Procrustes: rmse 1.649218e-06  max resid 3.908317e-06 
## ... Similar to previous best
## Run 339 stress 0.1429816 
## Run 340 stress 0.1004721 
## ... Procrustes: rmse 4.035926e-06  max resid 1.143608e-05 
## ... Similar to previous best
## Run 341 stress 0.1004721 
## ... Procrustes: rmse 3.875835e-06  max resid 1.044704e-05 
## ... Similar to previous best
## Run 342 stress 0.1004721 
## ... Procrustes: rmse 9.562569e-07  max resid 2.03364e-06 
## ... Similar to previous best
## Run 343 stress 0.1004721 
## ... Procrustes: rmse 4.293371e-06  max resid 1.227375e-05 
## ... Similar to previous best
## Run 344 stress 0.1004721 
## ... Procrustes: rmse 2.771819e-06  max resid 7.802403e-06 
## ... Similar to previous best
## Run 345 stress 0.1524176 
## Run 346 stress 0.1004721 
## ... Procrustes: rmse 4.004491e-06  max resid 1.10725e-05 
## ... Similar to previous best
## Run 347 stress 0.1427047 
## Run 348 stress 0.1512113 
## Run 349 stress 0.1004721 
## ... Procrustes: rmse 4.20057e-06  max resid 1.136795e-05 
## ... Similar to previous best
## Run 350 stress 0.3578441 
## Run 351 stress 0.1512113 
## Run 352 stress 0.1004721 
## ... Procrustes: rmse 2.127745e-06  max resid 5.872781e-06 
## ... Similar to previous best
## Run 353 stress 0.1532429 
## Run 354 stress 0.1004721 
## ... Procrustes: rmse 4.757821e-06  max resid 1.354773e-05 
## ... Similar to previous best
## Run 355 stress 0.1429816 
## Run 356 stress 0.1004721 
## ... Procrustes: rmse 1.158628e-06  max resid 2.946599e-06 
## ... Similar to previous best
## Run 357 stress 0.1524181 
## Run 358 stress 0.1004721 
## ... Procrustes: rmse 2.955658e-06  max resid 7.493241e-06 
## ... Similar to previous best
## Run 359 stress 0.1524179 
## Run 360 stress 0.1004721 
## ... Procrustes: rmse 6.264947e-07  max resid 1.518598e-06 
## ... Similar to previous best
## Run 361 stress 0.1512115 
## Run 362 stress 0.1004721 
## ... Procrustes: rmse 2.971644e-06  max resid 8.388485e-06 
## ... Similar to previous best
## Run 363 stress 0.1004721 
## ... Procrustes: rmse 6.339814e-07  max resid 1.218907e-06 
## ... Similar to previous best
## Run 364 stress 0.1004721 
## ... Procrustes: rmse 2.118594e-06  max resid 6.075766e-06 
## ... Similar to previous best
## Run 365 stress 0.1004721 
## ... Procrustes: rmse 4.212976e-06  max resid 1.207103e-05 
## ... Similar to previous best
## Run 366 stress 0.1429818 
## Run 367 stress 0.1524178 
## Run 368 stress 0.1004721 
## ... Procrustes: rmse 3.164877e-06  max resid 9.040988e-06 
## ... Similar to previous best
## Run 369 stress 0.1004721 
## ... Procrustes: rmse 5.28691e-06  max resid 1.281265e-05 
## ... Similar to previous best
## Run 370 stress 0.1004721 
## ... Procrustes: rmse 1.501224e-06  max resid 3.94928e-06 
## ... Similar to previous best
## Run 371 stress 0.1004721 
## ... Procrustes: rmse 3.245434e-07  max resid 7.234604e-07 
## ... Similar to previous best
## Run 372 stress 0.1524177 
## Run 373 stress 0.1004721 
## ... Procrustes: rmse 2.166313e-06  max resid 5.684883e-06 
## ... Similar to previous best
## Run 374 stress 0.1427047 
## Run 375 stress 0.1004721 
## ... Procrustes: rmse 3.430105e-06  max resid 9.085139e-06 
## ... Similar to previous best
## Run 376 stress 0.1004721 
## ... Procrustes: rmse 1.1918e-06  max resid 2.997723e-06 
## ... Similar to previous best
## Run 377 stress 0.1004721 
## ... Procrustes: rmse 1.262705e-06  max resid 3.546463e-06 
## ... Similar to previous best
## Run 378 stress 0.3578479 
## Run 379 stress 0.1004721 
## ... Procrustes: rmse 5.299905e-06  max resid 1.476529e-05 
## ... Similar to previous best
## Run 380 stress 0.1004721 
## ... Procrustes: rmse 1.842268e-06  max resid 5.196282e-06 
## ... Similar to previous best
## Run 381 stress 0.1004721 
## ... Procrustes: rmse 8.271055e-07  max resid 1.974154e-06 
## ... Similar to previous best
## Run 382 stress 0.1004721 
## ... Procrustes: rmse 1.340815e-06  max resid 3.696932e-06 
## ... Similar to previous best
## Run 383 stress 0.1004721 
## ... Procrustes: rmse 3.169247e-06  max resid 8.731027e-06 
## ... Similar to previous best
## Run 384 stress 0.1004721 
## ... Procrustes: rmse 8.260208e-06  max resid 2.074549e-05 
## ... Similar to previous best
## Run 385 stress 0.1429822 
## Run 386 stress 0.1004721 
## ... Procrustes: rmse 1.362668e-06  max resid 3.677049e-06 
## ... Similar to previous best
## Run 387 stress 0.1427047 
## Run 388 stress 0.1004721 
## ... Procrustes: rmse 4.199704e-06  max resid 9.705149e-06 
## ... Similar to previous best
## Run 389 stress 0.1429819 
## Run 390 stress 0.1004721 
## ... Procrustes: rmse 9.625556e-06  max resid 2.74616e-05 
## ... Similar to previous best
## Run 391 stress 0.1427047 
## Run 392 stress 0.1427047 
## Run 393 stress 0.1004721 
## ... Procrustes: rmse 4.049461e-06  max resid 1.145424e-05 
## ... Similar to previous best
## Run 394 stress 0.1004721 
## ... Procrustes: rmse 5.417521e-07  max resid 1.306148e-06 
## ... Similar to previous best
## Run 395 stress 0.1524178 
## Run 396 stress 0.1004721 
## ... Procrustes: rmse 3.554854e-06  max resid 9.980253e-06 
## ... Similar to previous best
## Run 397 stress 0.1004721 
## ... Procrustes: rmse 1.649189e-06  max resid 4.718699e-06 
## ... Similar to previous best
## Run 398 stress 0.1004721 
## ... Procrustes: rmse 1.800008e-06  max resid 3.920382e-06 
## ... Similar to previous best
## Run 399 stress 0.1004721 
## ... Procrustes: rmse 4.004515e-06  max resid 1.133723e-05 
## ... Similar to previous best
## Run 400 stress 0.1004721 
## ... Procrustes: rmse 8.063675e-06  max resid 2.253947e-05 
## ... Similar to previous best
## Run 401 stress 0.1004721 
## ... Procrustes: rmse 2.954209e-06  max resid 8.096571e-06 
## ... Similar to previous best
## Run 402 stress 0.1004721 
## ... Procrustes: rmse 8.517902e-07  max resid 1.907573e-06 
## ... Similar to previous best
## Run 403 stress 0.1004721 
## ... Procrustes: rmse 5.357491e-06  max resid 1.498475e-05 
## ... Similar to previous best
## Run 404 stress 0.1004721 
## ... Procrustes: rmse 3.130896e-06  max resid 8.398818e-06 
## ... Similar to previous best
## Run 405 stress 0.1004721 
## ... Procrustes: rmse 1.701671e-06  max resid 3.691539e-06 
## ... Similar to previous best
## Run 406 stress 0.1004721 
## ... Procrustes: rmse 5.283387e-07  max resid 1.065616e-06 
## ... Similar to previous best
## Run 407 stress 0.1004721 
## ... Procrustes: rmse 1.897825e-06  max resid 4.943013e-06 
## ... Similar to previous best
## Run 408 stress 0.1004721 
## ... Procrustes: rmse 2.409424e-06  max resid 5.291258e-06 
## ... Similar to previous best
## Run 409 stress 0.1429816 
## Run 410 stress 0.1004721 
## ... Procrustes: rmse 4.232138e-06  max resid 1.143443e-05 
## ... Similar to previous best
## Run 411 stress 0.1524181 
## Run 412 stress 0.1524176 
## Run 413 stress 0.1512115 
## Run 414 stress 0.1004721 
## ... Procrustes: rmse 2.831162e-06  max resid 7.261606e-06 
## ... Similar to previous best
## Run 415 stress 0.1004721 
## ... Procrustes: rmse 8.18431e-07  max resid 2.197907e-06 
## ... Similar to previous best
## Run 416 stress 0.1429816 
## Run 417 stress 0.1004721 
## ... Procrustes: rmse 9.484462e-07  max resid 1.361738e-06 
## ... Similar to previous best
## Run 418 stress 0.1429817 
## Run 419 stress 0.1004721 
## ... Procrustes: rmse 2.02876e-06  max resid 4.193628e-06 
## ... Similar to previous best
## Run 420 stress 0.1004721 
## ... Procrustes: rmse 1.923046e-06  max resid 4.418099e-06 
## ... Similar to previous best
## Run 421 stress 0.1512113 
## Run 422 stress 0.1427047 
## Run 423 stress 0.1429816 
## Run 424 stress 0.1429817 
## Run 425 stress 0.1427047 
## Run 426 stress 0.1004721 
## ... Procrustes: rmse 3.085175e-06  max resid 6.918795e-06 
## ... Similar to previous best
## Run 427 stress 0.1532428 
## Run 428 stress 0.1004721 
## ... Procrustes: rmse 3.733783e-06  max resid 1.047001e-05 
## ... Similar to previous best
## Run 429 stress 0.1429817 
## Run 430 stress 0.1004721 
## ... Procrustes: rmse 1.346469e-06  max resid 3.881231e-06 
## ... Similar to previous best
## Run 431 stress 0.1004721 
## ... Procrustes: rmse 1.445561e-06  max resid 3.884378e-06 
## ... Similar to previous best
## Run 432 stress 0.1004721 
## ... Procrustes: rmse 4.025645e-06  max resid 1.072022e-05 
## ... Similar to previous best
## Run 433 stress 0.1004721 
## ... Procrustes: rmse 1.381263e-06  max resid 3.563369e-06 
## ... Similar to previous best
## Run 434 stress 0.1004721 
## ... Procrustes: rmse 1.245098e-06  max resid 3.483805e-06 
## ... Similar to previous best
## Run 435 stress 0.1004721 
## ... Procrustes: rmse 2.436905e-06  max resid 6.478072e-06 
## ... Similar to previous best
## Run 436 stress 0.1004721 
## ... Procrustes: rmse 5.425772e-06  max resid 1.464646e-05 
## ... Similar to previous best
## Run 437 stress 0.1004721 
## ... Procrustes: rmse 1.418593e-06  max resid 3.413044e-06 
## ... Similar to previous best
## Run 438 stress 0.1004721 
## ... Procrustes: rmse 1.363651e-06  max resid 3.669386e-06 
## ... Similar to previous best
## Run 439 stress 0.1004721 
## ... Procrustes: rmse 3.520181e-07  max resid 7.232769e-07 
## ... Similar to previous best
## Run 440 stress 0.1004721 
## ... Procrustes: rmse 5.646911e-06  max resid 1.456706e-05 
## ... Similar to previous best
## Run 441 stress 0.1427047 
## Run 442 stress 0.142982 
## Run 443 stress 0.1429819 
## Run 444 stress 0.1004721 
## ... Procrustes: rmse 1.878623e-06  max resid 5.320877e-06 
## ... Similar to previous best
## Run 445 stress 0.1004721 
## ... Procrustes: rmse 1.873868e-06  max resid 5.007386e-06 
## ... Similar to previous best
## Run 446 stress 0.1512113 
## Run 447 stress 0.1004721 
## ... Procrustes: rmse 3.645026e-06  max resid 1.019922e-05 
## ... Similar to previous best
## Run 448 stress 0.1524178 
## Run 449 stress 0.1429818 
## Run 450 stress 0.1004721 
## ... Procrustes: rmse 3.601048e-06  max resid 1.001412e-05 
## ... Similar to previous best
## Run 451 stress 0.1512114 
## Run 452 stress 0.1524796 
## Run 453 stress 0.1004721 
## ... Procrustes: rmse 9.120651e-06  max resid 2.282377e-05 
## ... Similar to previous best
## Run 454 stress 0.1004721 
## ... Procrustes: rmse 4.110526e-06  max resid 1.151241e-05 
## ... Similar to previous best
## Run 455 stress 0.1004721 
## ... Procrustes: rmse 7.244893e-06  max resid 1.576638e-05 
## ... Similar to previous best
## Run 456 stress 0.1004721 
## ... Procrustes: rmse 1.991996e-06  max resid 5.175922e-06 
## ... Similar to previous best
## Run 457 stress 0.1004721 
## ... Procrustes: rmse 3.380523e-06  max resid 9.433621e-06 
## ... Similar to previous best
## Run 458 stress 0.142982 
## Run 459 stress 0.1004721 
## ... Procrustes: rmse 4.451401e-06  max resid 1.260126e-05 
## ... Similar to previous best
## Run 460 stress 0.1429818 
## Run 461 stress 0.1004721 
## ... Procrustes: rmse 6.53713e-07  max resid 1.455925e-06 
## ... Similar to previous best
## Run 462 stress 0.152418 
## Run 463 stress 0.1524796 
## Run 464 stress 0.1004721 
## ... Procrustes: rmse 3.799155e-06  max resid 1.065137e-05 
## ... Similar to previous best
## Run 465 stress 0.1004721 
## ... Procrustes: rmse 5.161659e-06  max resid 1.436953e-05 
## ... Similar to previous best
## Run 466 stress 0.1004721 
## ... Procrustes: rmse 2.920239e-06  max resid 7.526611e-06 
## ... Similar to previous best
## Run 467 stress 0.1004721 
## ... Procrustes: rmse 1.551771e-06  max resid 3.779973e-06 
## ... Similar to previous best
## Run 468 stress 0.1004721 
## ... Procrustes: rmse 2.197205e-06  max resid 6.245422e-06 
## ... Similar to previous best
## Run 469 stress 0.142982 
## Run 470 stress 0.1004721 
## ... Procrustes: rmse 1.039807e-06  max resid 2.654597e-06 
## ... Similar to previous best
## Run 471 stress 0.1004721 
## ... Procrustes: rmse 3.294262e-06  max resid 9.340308e-06 
## ... Similar to previous best
## Run 472 stress 0.1429817 
## Run 473 stress 0.1427047 
## Run 474 stress 0.1427047 
## Run 475 stress 0.1004721 
## ... Procrustes: rmse 8.181306e-06  max resid 2.305648e-05 
## ... Similar to previous best
## Run 476 stress 0.1427047 
## Run 477 stress 0.1004721 
## ... Procrustes: rmse 7.130127e-06  max resid 2.024441e-05 
## ... Similar to previous best
## Run 478 stress 0.1004721 
## ... Procrustes: rmse 4.607721e-06  max resid 1.270619e-05 
## ... Similar to previous best
## Run 479 stress 0.1524178 
## Run 480 stress 0.1429818 
## Run 481 stress 0.1004721 
## ... Procrustes: rmse 1.873525e-06  max resid 4.712319e-06 
## ... Similar to previous best
## Run 482 stress 0.1512114 
## Run 483 stress 0.1004721 
## ... Procrustes: rmse 7.852479e-06  max resid 1.557231e-05 
## ... Similar to previous best
## Run 484 stress 0.1004721 
## ... Procrustes: rmse 3.641953e-06  max resid 7.942452e-06 
## ... Similar to previous best
## Run 485 stress 0.3017596 
## Run 486 stress 0.1524176 
## Run 487 stress 0.1004721 
## ... Procrustes: rmse 1.509379e-06  max resid 3.142378e-06 
## ... Similar to previous best
## Run 488 stress 0.1004721 
## ... Procrustes: rmse 1.066679e-06  max resid 2.334279e-06 
## ... Similar to previous best
## Run 489 stress 0.1004721 
## ... Procrustes: rmse 1.497575e-06  max resid 3.289871e-06 
## ... Similar to previous best
## Run 490 stress 0.1004721 
## ... Procrustes: rmse 2.903611e-06  max resid 6.372272e-06 
## ... Similar to previous best
## Run 491 stress 0.1004721 
## ... Procrustes: rmse 3.145355e-06  max resid 8.429215e-06 
## ... Similar to previous best
## Run 492 stress 0.1004721 
## ... Procrustes: rmse 8.841246e-07  max resid 2.420365e-06 
## ... Similar to previous best
## Run 493 stress 0.1427047 
## Run 494 stress 0.1427047 
## Run 495 stress 0.1004721 
## ... Procrustes: rmse 3.341144e-06  max resid 9.400447e-06 
## ... Similar to previous best
## Run 496 stress 0.1004721 
## ... Procrustes: rmse 6.374299e-06  max resid 1.747625e-05 
## ... Similar to previous best
## Run 497 stress 0.1429818 
## Run 498 stress 0.1427047 
## Run 499 stress 0.1429816 
## Run 500 stress 0.1427047 
## *** Best solution repeated 145 times
# Stratified lakes and ocean sites
pdso_NMDS <- metaMDS(pdso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.05744284 
## Run 1 stress 0.05440995 
## ... New best solution
## ... Procrustes: rmse 0.0651015  max resid 0.131145 
## Run 2 stress 0.06408673 
## Run 3 stress 0.06692187 
## Run 4 stress 0.04751759 
## ... New best solution
## ... Procrustes: rmse 0.03827659  max resid 0.1061893 
## Run 5 stress 0.04751762 
## ... Procrustes: rmse 7.091946e-05  max resid 0.0001710738 
## ... Similar to previous best
## Run 6 stress 0.05672451 
## Run 7 stress 0.05820216 
## Run 8 stress 0.0551636 
## Run 9 stress 0.05672448 
## Run 10 stress 0.04997309 
## Run 11 stress 0.06317194 
## Run 12 stress 0.05440994 
## Run 13 stress 0.06408676 
## Run 14 stress 0.06317199 
## Run 15 stress 0.04378852 
## ... New best solution
## ... Procrustes: rmse 0.06082563  max resid 0.1762176 
## Run 16 stress 0.04624983 
## Run 17 stress 0.05582247 
## Run 18 stress 0.05408559 
## Run 19 stress 0.05440997 
## Run 20 stress 0.05820216 
## Run 21 stress 0.05744588 
## Run 22 stress 0.04378852 
## ... Procrustes: rmse 9.229561e-06  max resid 1.420124e-05 
## ... Similar to previous best
## Run 23 stress 0.05345089 
## Run 24 stress 0.06376403 
## Run 25 stress 0.05797435 
## Run 26 stress 0.04751759 
## Run 27 stress 0.05516361 
## Run 28 stress 0.05440993 
## Run 29 stress 0.05345089 
## Run 30 stress 0.06376402 
## Run 31 stress 0.04751758 
## Run 32 stress 0.0509714 
## Run 33 stress 0.05345087 
## Run 34 stress 0.05861704 
## Run 35 stress 0.04624983 
## Run 36 stress 0.05097142 
## Run 37 stress 0.05097153 
## Run 38 stress 0.06408677 
## Run 39 stress 0.05440993 
## Run 40 stress 0.04624984 
## Run 41 stress 0.05582211 
## Run 42 stress 0.05861692 
## Run 43 stress 0.04378852 
## ... Procrustes: rmse 9.158117e-06  max resid 1.591213e-05 
## ... Similar to previous best
## Run 44 stress 0.04751761 
## Run 45 stress 0.05820218 
## Run 46 stress 0.04997307 
## Run 47 stress 0.05345088 
## Run 48 stress 0.3495698 
## Run 49 stress 0.05097143 
## Run 50 stress 0.04624983 
## Run 51 stress 0.05188584 
## Run 52 stress 0.05408559 
## Run 53 stress 0.06673688 
## Run 54 stress 0.04378853 
## ... Procrustes: rmse 2.666501e-05  max resid 4.757594e-05 
## ... Similar to previous best
## Run 55 stress 0.05097142 
## Run 56 stress 0.04751759 
## Run 57 stress 0.05582463 
## Run 58 stress 0.04708597 
## Run 59 stress 0.04378852 
## ... Procrustes: rmse 4.740301e-06  max resid 8.373124e-06 
## ... Similar to previous best
## Run 60 stress 0.05440994 
## Run 61 stress 0.04378852 
## ... New best solution
## ... Procrustes: rmse 1.412649e-06  max resid 3.083181e-06 
## ... Similar to previous best
## Run 62 stress 0.05797436 
## Run 63 stress 0.0509714 
## Run 64 stress 0.05307522 
## Run 65 stress 0.05582203 
## Run 66 stress 0.04708598 
## Run 67 stress 0.05345088 
## Run 68 stress 0.04708598 
## Run 69 stress 0.0475176 
## Run 70 stress 0.04624983 
## Run 71 stress 0.04624983 
## Run 72 stress 0.05797423 
## Run 73 stress 0.04378852 
## ... Procrustes: rmse 1.871276e-06  max resid 3.206638e-06 
## ... Similar to previous best
## Run 74 stress 0.0534509 
## Run 75 stress 0.04378853 
## ... Procrustes: rmse 2.136595e-05  max resid 4.132983e-05 
## ... Similar to previous best
## Run 76 stress 0.05345087 
## Run 77 stress 0.05762361 
## Run 78 stress 0.04378852 
## ... Procrustes: rmse 3.705509e-06  max resid 6.592648e-06 
## ... Similar to previous best
## Run 79 stress 0.05820216 
## Run 80 stress 0.05762349 
## Run 81 stress 0.05516361 
## Run 82 stress 0.06376402 
## Run 83 stress 0.0509714 
## Run 84 stress 0.05440993 
## Run 85 stress 0.05440994 
## Run 86 stress 0.04751759 
## Run 87 stress 0.0540856 
## Run 88 stress 0.04624985 
## Run 89 stress 0.05672436 
## Run 90 stress 0.06673679 
## Run 91 stress 0.06317192 
## Run 92 stress 0.05861699 
## Run 93 stress 0.05820217 
## Run 94 stress 0.05820218 
## Run 95 stress 0.05797422 
## Run 96 stress 0.04751759 
## Run 97 stress 0.06408673 
## Run 98 stress 0.04378852 
## ... Procrustes: rmse 1.266392e-06  max resid 2.358145e-06 
## ... Similar to previous best
## Run 99 stress 0.05753097 
## Run 100 stress 0.04751763 
## Run 101 stress 0.05345087 
## Run 102 stress 0.05440999 
## Run 103 stress 0.05762375 
## Run 104 stress 0.05582232 
## Run 105 stress 0.04624983 
## Run 106 stress 0.04751759 
## Run 107 stress 0.05408561 
## Run 108 stress 0.05440994 
## Run 109 stress 0.0551636 
## Run 110 stress 0.05097139 
## Run 111 stress 0.04997309 
## Run 112 stress 0.05097153 
## Run 113 stress 0.04751758 
## Run 114 stress 0.05345088 
## Run 115 stress 0.05797431 
## Run 116 stress 0.05797419 
## Run 117 stress 0.04997307 
## Run 118 stress 0.05440992 
## Run 119 stress 0.04997304 
## Run 120 stress 0.05820218 
## Run 121 stress 0.06408676 
## Run 122 stress 0.0534509 
## Run 123 stress 0.05582236 
## Run 124 stress 0.05516361 
## Run 125 stress 0.06024748 
## Run 126 stress 0.04751759 
## Run 127 stress 0.05762359 
## Run 128 stress 0.04751759 
## Run 129 stress 0.05516362 
## Run 130 stress 0.05097148 
## Run 131 stress 0.05188592 
## Run 132 stress 0.05582459 
## Run 133 stress 0.04624983 
## Run 134 stress 0.05307522 
## Run 135 stress 0.05440992 
## Run 136 stress 0.05440994 
## Run 137 stress 0.05582243 
## Run 138 stress 0.04624983 
## Run 139 stress 0.04624983 
## Run 140 stress 0.04624984 
## Run 141 stress 0.0576234 
## Run 142 stress 0.05097145 
## Run 143 stress 0.05762367 
## Run 144 stress 0.06285543 
## Run 145 stress 0.05582175 
## Run 146 stress 0.05408559 
## Run 147 stress 0.04378853 
## ... Procrustes: rmse 2.489692e-05  max resid 4.315074e-05 
## ... Similar to previous best
## Run 148 stress 0.0475176 
## Run 149 stress 0.05188584 
## Run 150 stress 0.04751758 
## Run 151 stress 0.05408566 
## Run 152 stress 0.04997317 
## Run 153 stress 0.05440998 
## Run 154 stress 0.06408672 
## Run 155 stress 0.04751759 
## Run 156 stress 0.05440993 
## Run 157 stress 0.05861689 
## Run 158 stress 0.04997293 
## Run 159 stress 0.04708597 
## Run 160 stress 0.04751759 
## Run 161 stress 0.05739947 
## Run 162 stress 0.04378852 
## ... Procrustes: rmse 8.357805e-06  max resid 1.488061e-05 
## ... Similar to previous best
## Run 163 stress 0.04378852 
## ... Procrustes: rmse 7.995719e-06  max resid 1.355584e-05 
## ... Similar to previous best
## Run 164 stress 0.04751759 
## Run 165 stress 0.05762347 
## Run 166 stress 0.05440993 
## Run 167 stress 0.05188588 
## Run 168 stress 0.04751761 
## Run 169 stress 0.05441 
## Run 170 stress 0.04751758 
## Run 171 stress 0.04751759 
## Run 172 stress 0.04751762 
## Run 173 stress 0.05440992 
## Run 174 stress 0.05097154 
## Run 175 stress 0.05744317 
## Run 176 stress 0.05188589 
## Run 177 stress 0.05762345 
## Run 178 stress 0.06285562 
## Run 179 stress 0.05762356 
## Run 180 stress 0.04751759 
## Run 181 stress 0.05440992 
## Run 182 stress 0.0567244 
## Run 183 stress 0.0551636 
## Run 184 stress 0.04751761 
## Run 185 stress 0.04378852 
## ... New best solution
## ... Procrustes: rmse 1.160208e-06  max resid 2.546475e-06 
## ... Similar to previous best
## Run 186 stress 0.06317203 
## Run 187 stress 0.06024735 
## Run 188 stress 0.05797433 
## Run 189 stress 0.0551636 
## Run 190 stress 0.05762344 
## Run 191 stress 0.05744428 
## Run 192 stress 0.04751758 
## Run 193 stress 0.05188586 
## Run 194 stress 0.05408559 
## Run 195 stress 0.05739905 
## Run 196 stress 0.04624984 
## Run 197 stress 0.06673702 
## Run 198 stress 0.04378852 
## ... Procrustes: rmse 3.793241e-06  max resid 7.577256e-06 
## ... Similar to previous best
## Run 199 stress 0.04378852 
## ... Procrustes: rmse 6.104225e-06  max resid 9.792574e-06 
## ... Similar to previous best
## Run 200 stress 0.05744345 
## Run 201 stress 0.04378852 
## ... Procrustes: rmse 5.977417e-06  max resid 1.057847e-05 
## ... Similar to previous best
## Run 202 stress 0.05672442 
## Run 203 stress 0.05097143 
## Run 204 stress 0.04624984 
## Run 205 stress 0.0475176 
## Run 206 stress 0.05440995 
## Run 207 stress 0.04624983 
## Run 208 stress 0.06317193 
## Run 209 stress 0.05744299 
## Run 210 stress 0.05762341 
## Run 211 stress 0.04378852 
## ... Procrustes: rmse 5.521076e-06  max resid 9.120749e-06 
## ... Similar to previous best
## Run 212 stress 0.04997291 
## Run 213 stress 0.05516361 
## Run 214 stress 0.05408559 
## Run 215 stress 0.05097142 
## Run 216 stress 0.05440993 
## Run 217 stress 0.05516367 
## Run 218 stress 0.05672436 
## Run 219 stress 0.0509715 
## Run 220 stress 0.0576235 
## Run 221 stress 0.06317199 
## Run 222 stress 0.05440994 
## Run 223 stress 0.06408677 
## Run 224 stress 0.05672447 
## Run 225 stress 0.04708602 
## Run 226 stress 0.06163049 
## Run 227 stress 0.05739906 
## Run 228 stress 0.05440992 
## Run 229 stress 0.0586169 
## Run 230 stress 0.04624983 
## Run 231 stress 0.05797417 
## Run 232 stress 0.04624983 
## Run 233 stress 0.05188587 
## Run 234 stress 0.0534509 
## Run 235 stress 0.0475176 
## Run 236 stress 0.05820218 
## Run 237 stress 0.04378853 
## ... Procrustes: rmse 2.957594e-05  max resid 5.224442e-05 
## ... Similar to previous best
## Run 238 stress 0.04708595 
## Run 239 stress 0.04378852 
## ... Procrustes: rmse 8.121864e-06  max resid 1.461425e-05 
## ... Similar to previous best
## Run 240 stress 0.04624983 
## Run 241 stress 0.05188585 
## Run 242 stress 0.04624983 
## Run 243 stress 0.05408562 
## Run 244 stress 0.0509714 
## Run 245 stress 0.05188594 
## Run 246 stress 0.05097142 
## Run 247 stress 0.04624983 
## Run 248 stress 0.05188589 
## Run 249 stress 0.04751761 
## Run 250 stress 0.05307522 
## Run 251 stress 0.04378852 
## ... Procrustes: rmse 1.490531e-05  max resid 2.595073e-05 
## ... Similar to previous best
## Run 252 stress 0.04624983 
## Run 253 stress 0.05582199 
## Run 254 stress 0.04708596 
## Run 255 stress 0.04751765 
## Run 256 stress 0.05762383 
## Run 257 stress 0.04624983 
## Run 258 stress 0.04624984 
## Run 259 stress 0.3495726 
## Run 260 stress 0.06408673 
## Run 261 stress 0.04378852 
## ... Procrustes: rmse 7.417483e-06  max resid 1.423833e-05 
## ... Similar to previous best
## Run 262 stress 0.04378852 
## ... Procrustes: rmse 3.533775e-06  max resid 5.692727e-06 
## ... Similar to previous best
## Run 263 stress 0.04378852 
## ... Procrustes: rmse 2.088598e-05  max resid 3.679193e-05 
## ... Similar to previous best
## Run 264 stress 0.06317203 
## Run 265 stress 0.05440992 
## Run 266 stress 0.05440992 
## Run 267 stress 0.0509715 
## Run 268 stress 0.05440995 
## Run 269 stress 0.0616305 
## Run 270 stress 0.04997297 
## Run 271 stress 0.04378852 
## ... Procrustes: rmse 7.099879e-06  max resid 1.277985e-05 
## ... Similar to previous best
## Run 272 stress 0.04751758 
## Run 273 stress 0.04751761 
## Run 274 stress 0.05762375 
## Run 275 stress 0.05440993 
## Run 276 stress 0.04624984 
## Run 277 stress 0.0551636 
## Run 278 stress 0.05762369 
## Run 279 stress 0.04378852 
## ... Procrustes: rmse 1.849194e-06  max resid 2.953801e-06 
## ... Similar to previous best
## Run 280 stress 0.0576235 
## Run 281 stress 0.0551636 
## Run 282 stress 0.05744464 
## Run 283 stress 0.04997293 
## Run 284 stress 0.05307527 
## Run 285 stress 0.04624984 
## Run 286 stress 0.04751758 
## Run 287 stress 0.04751766 
## Run 288 stress 0.04624984 
## Run 289 stress 0.04997317 
## Run 290 stress 0.05440997 
## Run 291 stress 0.04751758 
## Run 292 stress 0.05672439 
## Run 293 stress 0.04708595 
## Run 294 stress 0.06692226 
## Run 295 stress 0.05762354 
## Run 296 stress 0.0582022 
## Run 297 stress 0.05582462 
## Run 298 stress 0.05582184 
## Run 299 stress 0.04751762 
## Run 300 stress 0.04708599 
## Run 301 stress 0.04378852 
## ... Procrustes: rmse 1.680311e-05  max resid 2.99941e-05 
## ... Similar to previous best
## Run 302 stress 0.04624985 
## Run 303 stress 0.05762359 
## Run 304 stress 0.05097143 
## Run 305 stress 0.04378852 
## ... Procrustes: rmse 7.418698e-06  max resid 1.260082e-05 
## ... Similar to previous best
## Run 306 stress 0.06376401 
## Run 307 stress 0.05188588 
## Run 308 stress 0.04378853 
## ... Procrustes: rmse 3.421482e-05  max resid 5.965839e-05 
## ... Similar to previous best
## Run 309 stress 0.05307523 
## Run 310 stress 0.04624983 
## Run 311 stress 0.04997285 
## Run 312 stress 0.06285537 
## Run 313 stress 0.05739971 
## Run 314 stress 0.05744525 
## Run 315 stress 0.04624983 
## Run 316 stress 0.04624984 
## Run 317 stress 0.04624983 
## Run 318 stress 0.05861694 
## Run 319 stress 0.05797422 
## Run 320 stress 0.05861705 
## Run 321 stress 0.05820221 
## Run 322 stress 0.0475176 
## Run 323 stress 0.04624985 
## Run 324 stress 0.05188593 
## Run 325 stress 0.04624983 
## Run 326 stress 0.05097147 
## Run 327 stress 0.05408563 
## Run 328 stress 0.05097154 
## Run 329 stress 0.06673703 
## Run 330 stress 0.05762335 
## Run 331 stress 0.3318533 
## Run 332 stress 0.04624986 
## Run 333 stress 0.0575309 
## Run 334 stress 0.04378852 
## ... Procrustes: rmse 5.910088e-06  max resid 9.99348e-06 
## ... Similar to previous best
## Run 335 stress 0.0475176 
## Run 336 stress 0.04378852 
## ... Procrustes: rmse 4.512838e-06  max resid 7.449304e-06 
## ... Similar to previous best
## Run 337 stress 0.05097144 
## Run 338 stress 0.0551636 
## Run 339 stress 0.04378852 
## ... Procrustes: rmse 1.959382e-05  max resid 3.428399e-05 
## ... Similar to previous best
## Run 340 stress 0.04751759 
## Run 341 stress 0.04378852 
## ... Procrustes: rmse 2.965443e-06  max resid 6.589846e-06 
## ... Similar to previous best
## Run 342 stress 0.063172 
## Run 343 stress 0.04624984 
## Run 344 stress 0.04997297 
## Run 345 stress 0.05307524 
## Run 346 stress 0.06317192 
## Run 347 stress 0.0475176 
## Run 348 stress 0.06024718 
## Run 349 stress 0.04624983 
## Run 350 stress 0.04624983 
## Run 351 stress 0.0475176 
## Run 352 stress 0.05861686 
## Run 353 stress 0.04708601 
## Run 354 stress 0.05582179 
## Run 355 stress 0.06408673 
## Run 356 stress 0.04624983 
## Run 357 stress 0.05744406 
## Run 358 stress 0.05797421 
## Run 359 stress 0.05440994 
## Run 360 stress 0.05516361 
## Run 361 stress 0.04708597 
## Run 362 stress 0.05582228 
## Run 363 stress 0.04751758 
## Run 364 stress 0.0540856 
## Run 365 stress 0.05762349 
## Run 366 stress 0.05440993 
## Run 367 stress 0.0551636 
## Run 368 stress 0.05097146 
## Run 369 stress 0.05188585 
## Run 370 stress 0.05440997 
## Run 371 stress 0.05582236 
## Run 372 stress 0.0631721 
## Run 373 stress 0.0567245 
## Run 374 stress 0.063172 
## Run 375 stress 0.05582463 
## Run 376 stress 0.04378853 
## ... Procrustes: rmse 2.866342e-05  max resid 4.977335e-05 
## ... Similar to previous best
## Run 377 stress 0.04751759 
## Run 378 stress 0.05440992 
## Run 379 stress 0.05188587 
## Run 380 stress 0.04751762 
## Run 381 stress 0.0551636 
## Run 382 stress 0.05739903 
## Run 383 stress 0.04378852 
## ... Procrustes: rmse 7.773831e-06  max resid 1.902306e-05 
## ... Similar to previous best
## Run 384 stress 0.04708598 
## Run 385 stress 0.06317192 
## Run 386 stress 0.0475176 
## Run 387 stress 0.06673684 
## Run 388 stress 0.05861697 
## Run 389 stress 0.06376407 
## Run 390 stress 0.04378852 
## ... Procrustes: rmse 1.387107e-05  max resid 2.453052e-05 
## ... Similar to previous best
## Run 391 stress 0.04378852 
## ... Procrustes: rmse 5.97708e-06  max resid 1.044688e-05 
## ... Similar to previous best
## Run 392 stress 0.06376401 
## Run 393 stress 0.05516361 
## Run 394 stress 0.05097149 
## Run 395 stress 0.05097144 
## Run 396 stress 0.05582168 
## Run 397 stress 0.05440992 
## Run 398 stress 0.06317198 
## Run 399 stress 0.05345088 
## Run 400 stress 0.05097156 
## Run 401 stress 0.06163049 
## Run 402 stress 0.05440996 
## Run 403 stress 0.05345088 
## Run 404 stress 0.05440992 
## Run 405 stress 0.05762367 
## Run 406 stress 0.05753083 
## Run 407 stress 0.0573989 
## Run 408 stress 0.04378852 
## ... Procrustes: rmse 6.917572e-06  max resid 1.204174e-05 
## ... Similar to previous best
## Run 409 stress 0.05672442 
## Run 410 stress 0.05097141 
## Run 411 stress 0.04751762 
## Run 412 stress 0.05345088 
## Run 413 stress 0.06163053 
## Run 414 stress 0.05440993 
## Run 415 stress 0.04708595 
## Run 416 stress 0.05440998 
## Run 417 stress 0.06285571 
## Run 418 stress 0.05820217 
## Run 419 stress 0.05408559 
## Run 420 stress 0.04624984 
## Run 421 stress 0.04708596 
## Run 422 stress 0.04708595 
## Run 423 stress 0.04624983 
## Run 424 stress 0.05739897 
## Run 425 stress 0.05672444 
## Run 426 stress 0.04624983 
## Run 427 stress 0.05441001 
## Run 428 stress 0.04708595 
## Run 429 stress 0.05744402 
## Run 430 stress 0.05097154 
## Run 431 stress 0.04378852 
## ... Procrustes: rmse 5.719445e-06  max resid 1.000943e-05 
## ... Similar to previous best
## Run 432 stress 0.04378852 
## ... Procrustes: rmse 1.463937e-05  max resid 2.550184e-05 
## ... Similar to previous best
## Run 433 stress 0.3442041 
## Run 434 stress 0.05797416 
## Run 435 stress 0.05753096 
## Run 436 stress 0.06408676 
## Run 437 stress 0.05516362 
## Run 438 stress 0.04751759 
## Run 439 stress 0.06673675 
## Run 440 stress 0.05739943 
## Run 441 stress 0.06024724 
## Run 442 stress 0.04378852 
## ... Procrustes: rmse 4.027651e-06  max resid 6.981168e-06 
## ... Similar to previous best
## Run 443 stress 0.0574422 
## Run 444 stress 0.06317193 
## Run 445 stress 0.06163049 
## Run 446 stress 0.05097142 
## Run 447 stress 0.05820216 
## Run 448 stress 0.05440998 
## Run 449 stress 0.0475176 
## Run 450 stress 0.05097149 
## Run 451 stress 0.05672444 
## Run 452 stress 0.05762352 
## Run 453 stress 0.06408673 
## Run 454 stress 0.05744325 
## Run 455 stress 0.05440992 
## Run 456 stress 0.04708595 
## Run 457 stress 0.0558247 
## Run 458 stress 0.04378852 
## ... Procrustes: rmse 7.700612e-06  max resid 1.27689e-05 
## ... Similar to previous best
## Run 459 stress 0.05097146 
## Run 460 stress 0.04624984 
## Run 461 stress 0.05582174 
## Run 462 stress 0.06376403 
## Run 463 stress 0.04708595 
## Run 464 stress 0.05440993 
## Run 465 stress 0.05440992 
## Run 466 stress 0.05097143 
## Run 467 stress 0.05672439 
## Run 468 stress 0.05762363 
## Run 469 stress 0.06408676 
## Run 470 stress 0.04708596 
## Run 471 stress 0.06408675 
## Run 472 stress 0.04624983 
## Run 473 stress 0.05408561 
## Run 474 stress 0.05516361 
## Run 475 stress 0.04751761 
## Run 476 stress 0.04624983 
## Run 477 stress 0.0540856 
## Run 478 stress 0.05762369 
## Run 479 stress 0.06735813 
## Run 480 stress 0.05440992 
## Run 481 stress 0.05672444 
## Run 482 stress 0.05097139 
## Run 483 stress 0.05516362 
## Run 484 stress 0.05744317 
## Run 485 stress 0.05097146 
## Run 486 stress 0.05797419 
## Run 487 stress 0.05345088 
## Run 488 stress 0.05345088 
## Run 489 stress 0.05188595 
## Run 490 stress 0.04751758 
## Run 491 stress 0.05861706 
## Run 492 stress 0.04708599 
## Run 493 stress 0.05188587 
## Run 494 stress 0.05188587 
## Run 495 stress 0.05408563 
## Run 496 stress 0.05097148 
## Run 497 stress 0.05516363 
## Run 498 stress 0.04624983 
## Run 499 stress 0.04378852 
## ... Procrustes: rmse 6.587512e-06  max resid 1.079089e-05 
## ... Similar to previous best
## Run 500 stress 0.05345089 
## *** Best solution repeated 30 times
# Stratified lakes
pds_NMDS <- metaMDS(pds_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.02693829 
## Run 1 stress 0.02693834 
## ... Procrustes: rmse 9.29161e-05  max resid 0.0001607191 
## ... Similar to previous best
## Run 2 stress 0.08382835 
## Run 3 stress 0.02693829 
## ... Procrustes: rmse 1.666719e-05  max resid 2.882272e-05 
## ... Similar to previous best
## Run 4 stress 0.07547299 
## Run 5 stress 0.07374801 
## Run 6 stress 0.08382845 
## Run 7 stress 0.0269384 
## ... Procrustes: rmse 0.000163561  max resid 0.0002807127 
## ... Similar to previous best
## Run 8 stress 0.07547299 
## Run 9 stress 0.02693832 
## ... Procrustes: rmse 0.0001103702  max resid 0.000211996 
## ... Similar to previous best
## Run 10 stress 0.07547299 
## Run 11 stress 0.02693829 
## ... Procrustes: rmse 4.385179e-05  max resid 7.491448e-05 
## ... Similar to previous best
## Run 12 stress 0.02693835 
## ... Procrustes: rmse 0.0001530402  max resid 0.0002618044 
## ... Similar to previous best
## Run 13 stress 0.07374804 
## Run 14 stress 0.07547299 
## Run 15 stress 0.179905 
## Run 16 stress 0.02693834 
## ... Procrustes: rmse 0.0001425703  max resid 0.0002439744 
## ... Similar to previous best
## Run 17 stress 0.07374805 
## Run 18 stress 0.07374807 
## Run 19 stress 0.07547301 
## Run 20 stress 0.0269383 
## ... Procrustes: rmse 5.76642e-05  max resid 9.846806e-05 
## ... Similar to previous best
## Run 21 stress 0.02693838 
## ... Procrustes: rmse 0.0001847753  max resid 0.000317978 
## ... Similar to previous best
## Run 22 stress 0.07374801 
## Run 23 stress 0.02693836 
## ... Procrustes: rmse 9.235752e-05  max resid 0.0001540305 
## ... Similar to previous best
## Run 24 stress 0.02693835 
## ... Procrustes: rmse 0.0001623989  max resid 0.0002779555 
## ... Similar to previous best
## Run 25 stress 0.073748 
## Run 26 stress 0.02693837 
## ... Procrustes: rmse 0.000137005  max resid 0.0002350724 
## ... Similar to previous best
## Run 27 stress 0.02693828 
## ... New best solution
## ... Procrustes: rmse 3.149383e-05  max resid 5.383675e-05 
## ... Similar to previous best
## Run 28 stress 0.02693835 
## ... Procrustes: rmse 0.000158182  max resid 0.0002710952 
## ... Similar to previous best
## Run 29 stress 0.02693838 
## ... Procrustes: rmse 0.0001494045  max resid 0.0002564463 
## ... Similar to previous best
## Run 30 stress 0.073748 
## Run 31 stress 0.1889143 
## Run 32 stress 0.1889141 
## Run 33 stress 0.02693838 
## ... Procrustes: rmse 0.0001593238  max resid 0.0002746382 
## ... Similar to previous best
## Run 34 stress 0.07374811 
## Run 35 stress 0.07374811 
## Run 36 stress 0.02693838 
## ... Procrustes: rmse 0.000168617  max resid 0.0002868412 
## ... Similar to previous best
## Run 37 stress 0.0269383 
## ... Procrustes: rmse 9.066957e-05  max resid 0.0001562855 
## ... Similar to previous best
## Run 38 stress 0.1889141 
## Run 39 stress 0.07374808 
## Run 40 stress 0.02693833 
## ... Procrustes: rmse 0.0001240487  max resid 0.0002112457 
## ... Similar to previous best
## Run 41 stress 0.02693833 
## ... Procrustes: rmse 0.0001244781  max resid 0.0002118821 
## ... Similar to previous best
## Run 42 stress 0.08382861 
## Run 43 stress 0.07374808 
## Run 44 stress 0.02693832 
## ... Procrustes: rmse 9.258919e-05  max resid 0.0001619024 
## ... Similar to previous best
## Run 45 stress 0.02693833 
## ... Procrustes: rmse 0.0001071313  max resid 0.0001875899 
## ... Similar to previous best
## Run 46 stress 0.02693834 
## ... Procrustes: rmse 0.0001232024  max resid 0.0002120627 
## ... Similar to previous best
## Run 47 stress 0.02693843 
## ... Procrustes: rmse 0.0002041213  max resid 0.0003509954 
## ... Similar to previous best
## Run 48 stress 0.1889141 
## Run 49 stress 0.07374803 
## Run 50 stress 0.07374803 
## Run 51 stress 0.1799051 
## Run 52 stress 0.07547299 
## Run 53 stress 0.07374802 
## Run 54 stress 0.02693835 
## ... Procrustes: rmse 0.0001486244  max resid 0.0002555383 
## ... Similar to previous best
## Run 55 stress 0.08382867 
## Run 56 stress 0.1862383 
## Run 57 stress 0.07374806 
## Run 58 stress 0.07374812 
## Run 59 stress 0.0838286 
## Run 60 stress 0.075473 
## Run 61 stress 0.02693835 
## ... Procrustes: rmse 0.0001223948  max resid 0.0002100066 
## ... Similar to previous best
## Run 62 stress 0.02693831 
## ... Procrustes: rmse 7.473262e-05  max resid 0.0001286856 
## ... Similar to previous best
## Run 63 stress 0.07547302 
## Run 64 stress 0.02693829 
## ... Procrustes: rmse 6.381307e-05  max resid 0.0001106423 
## ... Similar to previous best
## Run 65 stress 0.02693837 
## ... Procrustes: rmse 0.0001448984  max resid 0.0002527261 
## ... Similar to previous best
## Run 66 stress 0.02693838 
## ... Procrustes: rmse 0.0001791959  max resid 0.0003071833 
## ... Similar to previous best
## Run 67 stress 0.08382825 
## Run 68 stress 0.02693838 
## ... Procrustes: rmse 0.0001573656  max resid 0.0002691611 
## ... Similar to previous best
## Run 69 stress 0.02693831 
## ... Procrustes: rmse 6.756698e-05  max resid 0.0001225144 
## ... Similar to previous best
## Run 70 stress 0.02693836 
## ... Procrustes: rmse 0.0001666984  max resid 0.000281343 
## ... Similar to previous best
## Run 71 stress 0.07374802 
## Run 72 stress 0.1756177 
## Run 73 stress 0.02693839 
## ... Procrustes: rmse 0.0001676988  max resid 0.0002871875 
## ... Similar to previous best
## Run 74 stress 0.1756177 
## Run 75 stress 0.08382847 
## Run 76 stress 0.0269383 
## ... Procrustes: rmse 8.206629e-05  max resid 0.0001405479 
## ... Similar to previous best
## Run 77 stress 0.2273964 
## Run 78 stress 0.02693838 
## ... Procrustes: rmse 0.0001490631  max resid 0.0002537367 
## ... Similar to previous best
## Run 79 stress 0.02693834 
## ... Procrustes: rmse 0.0001414024  max resid 0.0002413386 
## ... Similar to previous best
## Run 80 stress 0.1862386 
## Run 81 stress 0.075473 
## Run 82 stress 0.179905 
## Run 83 stress 0.02693836 
## ... Procrustes: rmse 0.0001663722  max resid 0.0002841554 
## ... Similar to previous best
## Run 84 stress 0.07547299 
## Run 85 stress 0.07547299 
## Run 86 stress 0.02693831 
## ... Procrustes: rmse 6.731871e-05  max resid 0.0001157086 
## ... Similar to previous best
## Run 87 stress 0.1889142 
## Run 88 stress 0.02693836 
## ... Procrustes: rmse 0.0001395681  max resid 0.0002402668 
## ... Similar to previous best
## Run 89 stress 0.02693838 
## ... Procrustes: rmse 0.0001837346  max resid 0.0003143628 
## ... Similar to previous best
## Run 90 stress 0.2273964 
## Run 91 stress 0.02693838 
## ... Procrustes: rmse 0.0001362744  max resid 0.0002347084 
## ... Similar to previous best
## Run 92 stress 0.02693835 
## ... Procrustes: rmse 0.0001452182  max resid 0.0002495811 
## ... Similar to previous best
## Run 93 stress 0.02693831 
## ... Procrustes: rmse 6.799429e-05  max resid 0.0001269799 
## ... Similar to previous best
## Run 94 stress 0.075473 
## Run 95 stress 0.07374805 
## Run 96 stress 0.02693828 
## ... Procrustes: rmse 2.196812e-05  max resid 3.802174e-05 
## ... Similar to previous best
## Run 97 stress 0.07374805 
## Run 98 stress 0.02693829 
## ... Procrustes: rmse 3.148779e-05  max resid 5.403168e-05 
## ... Similar to previous best
## Run 99 stress 0.02693833 
## ... Procrustes: rmse 0.0001307443  max resid 0.0002239169 
## ... Similar to previous best
## Run 100 stress 0.075473 
## Run 101 stress 0.07374809 
## Run 102 stress 0.08382836 
## Run 103 stress 0.02693832 
## ... Procrustes: rmse 3.495589e-05  max resid 5.88168e-05 
## ... Similar to previous best
## Run 104 stress 0.02693837 
## ... Procrustes: rmse 0.0001417436  max resid 0.000243421 
## ... Similar to previous best
## Run 105 stress 0.02693832 
## ... Procrustes: rmse 0.0001193994  max resid 0.0002037533 
## ... Similar to previous best
## Run 106 stress 0.02693832 
## ... Procrustes: rmse 8.93382e-05  max resid 0.0001531165 
## ... Similar to previous best
## Run 107 stress 0.02693832 
## ... Procrustes: rmse 8.427636e-05  max resid 0.0001461451 
## ... Similar to previous best
## Run 108 stress 0.0269383 
## ... Procrustes: rmse 7.53609e-05  max resid 0.0001285209 
## ... Similar to previous best
## Run 109 stress 0.02693834 
## ... Procrustes: rmse 7.265769e-05  max resid 0.00012134 
## ... Similar to previous best
## Run 110 stress 0.179905 
## Run 111 stress 0.02693831 
## ... Procrustes: rmse 7.4522e-05  max resid 0.0001277591 
## ... Similar to previous best
## Run 112 stress 0.02693838 
## ... Procrustes: rmse 0.0001774741  max resid 0.000302713 
## ... Similar to previous best
## Run 113 stress 0.02693838 
## ... Procrustes: rmse 0.0001525065  max resid 0.0002604144 
## ... Similar to previous best
## Run 114 stress 0.02693834 
## ... Procrustes: rmse 0.0001458612  max resid 0.0002496378 
## ... Similar to previous best
## Run 115 stress 0.07374804 
## Run 116 stress 0.0269384 
## ... Procrustes: rmse 0.0001746612  max resid 0.0002991847 
## ... Similar to previous best
## Run 117 stress 0.1862388 
## Run 118 stress 0.07547299 
## Run 119 stress 0.02693841 
## ... Procrustes: rmse 0.0001804184  max resid 0.0003101795 
## ... Similar to previous best
## Run 120 stress 0.07374804 
## Run 121 stress 0.07547301 
## Run 122 stress 0.02693836 
## ... Procrustes: rmse 0.0001631331  max resid 0.0002792539 
## ... Similar to previous best
## Run 123 stress 0.08382849 
## Run 124 stress 0.179905 
## Run 125 stress 0.07374807 
## Run 126 stress 0.02693834 
## ... Procrustes: rmse 0.0001121217  max resid 0.0001925853 
## ... Similar to previous best
## Run 127 stress 0.02693834 
## ... Procrustes: rmse 0.0001414928  max resid 0.0002423425 
## ... Similar to previous best
## Run 128 stress 0.02693833 
## ... Procrustes: rmse 0.0001254873  max resid 0.0002149371 
## ... Similar to previous best
## Run 129 stress 0.07547301 
## Run 130 stress 0.08382832 
## Run 131 stress 0.075473 
## Run 132 stress 0.02693837 
## ... Procrustes: rmse 0.0001473928  max resid 0.0002517501 
## ... Similar to previous best
## Run 133 stress 0.08382864 
## Run 134 stress 0.02693838 
## ... Procrustes: rmse 0.0001484554  max resid 0.0002529153 
## ... Similar to previous best
## Run 135 stress 0.07374806 
## Run 136 stress 0.0269383 
## ... Procrustes: rmse 5.798093e-05  max resid 9.959405e-05 
## ... Similar to previous best
## Run 137 stress 0.02693829 
## ... Procrustes: rmse 4.109596e-05  max resid 7.434626e-05 
## ... Similar to previous best
## Run 138 stress 0.02693831 
## ... Procrustes: rmse 0.0001016368  max resid 0.0001738912 
## ... Similar to previous best
## Run 139 stress 0.02693834 
## ... Procrustes: rmse 8.833897e-05  max resid 0.0001525527 
## ... Similar to previous best
## Run 140 stress 0.02693838 
## ... Procrustes: rmse 0.0001837683  max resid 0.0003149911 
## ... Similar to previous best
## Run 141 stress 0.02693843 
## ... Procrustes: rmse 0.0002212738  max resid 0.0003766217 
## ... Similar to previous best
## Run 142 stress 0.07374805 
## Run 143 stress 0.02693834 
## ... Procrustes: rmse 0.0001389726  max resid 0.0002370929 
## ... Similar to previous best
## Run 144 stress 0.07547301 
## Run 145 stress 0.1756177 
## Run 146 stress 0.1799051 
## Run 147 stress 0.1756177 
## Run 148 stress 0.08382873 
## Run 149 stress 0.02693831 
## ... Procrustes: rmse 9.569972e-05  max resid 0.0001627492 
## ... Similar to previous best
## Run 150 stress 0.02693834 
## ... Procrustes: rmse 0.0001252922  max resid 0.0002128099 
## ... Similar to previous best
## Run 151 stress 0.08382856 
## Run 152 stress 0.1862388 
## Run 153 stress 0.02693832 
## ... Procrustes: rmse 0.0001225493  max resid 0.0002098024 
## ... Similar to previous best
## Run 154 stress 0.02693832 
## ... Procrustes: rmse 8.860863e-05  max resid 0.0001519393 
## ... Similar to previous best
## Run 155 stress 0.02693842 
## ... Procrustes: rmse 0.0002145114  max resid 0.0003676543 
## ... Similar to previous best
## Run 156 stress 0.073748 
## Run 157 stress 0.02693829 
## ... Procrustes: rmse 6.825272e-05  max resid 0.0001167909 
## ... Similar to previous best
## Run 158 stress 0.02693831 
## ... Procrustes: rmse 0.0001087518  max resid 0.0001874114 
## ... Similar to previous best
## Run 159 stress 0.02693841 
## ... Procrustes: rmse 0.0001706217  max resid 0.0002906058 
## ... Similar to previous best
## Run 160 stress 0.07374803 
## Run 161 stress 0.07374802 
## Run 162 stress 0.0269384 
## ... Procrustes: rmse 0.0001982607  max resid 0.0003393788 
## ... Similar to previous best
## Run 163 stress 0.08382854 
## Run 164 stress 0.08382849 
## Run 165 stress 0.1756177 
## Run 166 stress 0.07547299 
## Run 167 stress 0.02693831 
## ... Procrustes: rmse 8.951509e-05  max resid 0.0001520813 
## ... Similar to previous best
## Run 168 stress 0.02693838 
## ... Procrustes: rmse 0.000152157  max resid 0.0002601988 
## ... Similar to previous best
## Run 169 stress 0.02693839 
## ... Procrustes: rmse 0.0001572753  max resid 0.0002700246 
## ... Similar to previous best
## Run 170 stress 0.179905 
## Run 171 stress 0.2852148 
## Run 172 stress 0.02693835 
## ... Procrustes: rmse 0.0001577084  max resid 0.0002701594 
## ... Similar to previous best
## Run 173 stress 0.02693839 
## ... Procrustes: rmse 0.0001859172  max resid 0.0003188152 
## ... Similar to previous best
## Run 174 stress 0.07374806 
## Run 175 stress 0.08382839 
## Run 176 stress 0.08382835 
## Run 177 stress 0.073748 
## Run 178 stress 0.0269383 
## ... Procrustes: rmse 4.878894e-05  max resid 8.387499e-05 
## ... Similar to previous best
## Run 179 stress 0.02693833 
## ... Procrustes: rmse 0.0001058982  max resid 0.0001821997 
## ... Similar to previous best
## Run 180 stress 0.02693837 
## ... Procrustes: rmse 0.0001736035  max resid 0.000291262 
## ... Similar to previous best
## Run 181 stress 0.02693839 
## ... Procrustes: rmse 0.0001625556  max resid 0.0002779824 
## ... Similar to previous best
## Run 182 stress 0.07374801 
## Run 183 stress 0.07374804 
## Run 184 stress 0.07374803 
## Run 185 stress 0.07374813 
## Run 186 stress 0.02693839 
## ... Procrustes: rmse 0.0001524568  max resid 0.0002628587 
## ... Similar to previous best
## Run 187 stress 0.07374804 
## Run 188 stress 0.073748 
## Run 189 stress 0.07374807 
## Run 190 stress 0.07547299 
## Run 191 stress 0.07374803 
## Run 192 stress 0.02693836 
## ... Procrustes: rmse 0.0001325976  max resid 0.0002275076 
## ... Similar to previous best
## Run 193 stress 0.073748 
## Run 194 stress 0.2273964 
## Run 195 stress 0.07374803 
## Run 196 stress 0.08382849 
## Run 197 stress 0.07374808 
## Run 198 stress 0.07374811 
## Run 199 stress 0.02693837 
## ... Procrustes: rmse 0.0001221587  max resid 0.0002105401 
## ... Similar to previous best
## Run 200 stress 0.08382857 
## Run 201 stress 0.02693829 
## ... Procrustes: rmse 3.63268e-05  max resid 5.223606e-05 
## ... Similar to previous best
## Run 202 stress 0.02693833 
## ... Procrustes: rmse 0.0001240157  max resid 0.0002128922 
## ... Similar to previous best
## Run 203 stress 0.07374809 
## Run 204 stress 0.02693831 
## ... Procrustes: rmse 8.161018e-05  max resid 0.0001398845 
## ... Similar to previous best
## Run 205 stress 0.07374803 
## Run 206 stress 0.1862383 
## Run 207 stress 0.02693832 
## ... Procrustes: rmse 9.407943e-05  max resid 0.0001616407 
## ... Similar to previous best
## Run 208 stress 0.02693837 
## ... Procrustes: rmse 0.0001695992  max resid 0.0002907071 
## ... Similar to previous best
## Run 209 stress 0.07547299 
## Run 210 stress 0.02693834 
## ... Procrustes: rmse 0.0001139974  max resid 0.0001946969 
## ... Similar to previous best
## Run 211 stress 0.02693835 
## ... Procrustes: rmse 0.0001544169  max resid 0.000264393 
## ... Similar to previous best
## Run 212 stress 0.07374802 
## Run 213 stress 0.075473 
## Run 214 stress 0.02693834 
## ... Procrustes: rmse 0.0001129282  max resid 0.0001936716 
## ... Similar to previous best
## Run 215 stress 0.02693834 
## ... Procrustes: rmse 0.0001153353  max resid 0.0001976228 
## ... Similar to previous best
## Run 216 stress 0.0269383 
## ... Procrustes: rmse 8.402682e-05  max resid 0.0001435961 
## ... Similar to previous best
## Run 217 stress 0.179905 
## Run 218 stress 0.1862384 
## Run 219 stress 0.02693832 
## ... Procrustes: rmse 0.0001129062  max resid 0.0001933423 
## ... Similar to previous best
## Run 220 stress 0.1889141 
## Run 221 stress 0.0269383 
## ... Procrustes: rmse 5.933413e-05  max resid 0.0001019149 
## ... Similar to previous best
## Run 222 stress 0.02693833 
## ... Procrustes: rmse 0.0001250503  max resid 0.0002138066 
## ... Similar to previous best
## Run 223 stress 0.1889141 
## Run 224 stress 0.02693835 
## ... Procrustes: rmse 0.0001282563  max resid 0.0002199608 
## ... Similar to previous best
## Run 225 stress 0.07374801 
## Run 226 stress 0.02693832 
## ... Procrustes: rmse 7.568656e-05  max resid 0.0001280391 
## ... Similar to previous best
## Run 227 stress 0.07374804 
## Run 228 stress 0.02693832 
## ... Procrustes: rmse 9.992894e-05  max resid 0.0001692002 
## ... Similar to previous best
## Run 229 stress 0.02693833 
## ... Procrustes: rmse 0.0001033725  max resid 0.0001768556 
## ... Similar to previous best
## Run 230 stress 0.02693839 
## ... Procrustes: rmse 0.0001658922  max resid 0.0002856761 
## ... Similar to previous best
## Run 231 stress 0.07374805 
## Run 232 stress 0.02693833 
## ... Procrustes: rmse 0.0001301089  max resid 0.0002228796 
## ... Similar to previous best
## Run 233 stress 0.07374802 
## Run 234 stress 0.07547299 
## Run 235 stress 0.1799051 
## Run 236 stress 0.07547299 
## Run 237 stress 0.07374804 
## Run 238 stress 0.02693831 
## ... Procrustes: rmse 7.6773e-05  max resid 0.0001309259 
## ... Similar to previous best
## Run 239 stress 0.0269383 
## ... Procrustes: rmse 7.858631e-05  max resid 0.0001351911 
## ... Similar to previous best
## Run 240 stress 0.02693839 
## ... Procrustes: rmse 0.0001898706  max resid 0.0003247608 
## ... Similar to previous best
## Run 241 stress 0.07374812 
## Run 242 stress 0.1756177 
## Run 243 stress 0.02693836 
## ... Procrustes: rmse 0.0001487614  max resid 0.0002530885 
## ... Similar to previous best
## Run 244 stress 0.02693835 
## ... Procrustes: rmse 0.0001434286  max resid 0.0002468574 
## ... Similar to previous best
## Run 245 stress 0.08382821 
## Run 246 stress 0.0269383 
## ... Procrustes: rmse 4.68451e-05  max resid 7.99795e-05 
## ... Similar to previous best
## Run 247 stress 0.0838287 
## Run 248 stress 0.02693831 
## ... Procrustes: rmse 6.840617e-05  max resid 0.0001165319 
## ... Similar to previous best
## Run 249 stress 0.02693829 
## ... Procrustes: rmse 2.806885e-05  max resid 4.71564e-05 
## ... Similar to previous best
## Run 250 stress 0.1756177 
## Run 251 stress 0.07374801 
## Run 252 stress 0.07374806 
## Run 253 stress 0.02693829 
## ... Procrustes: rmse 2.357875e-05  max resid 3.485181e-05 
## ... Similar to previous best
## Run 254 stress 0.07374808 
## Run 255 stress 0.07374801 
## Run 256 stress 0.07374809 
## Run 257 stress 0.02693832 
## ... Procrustes: rmse 9.483839e-05  max resid 0.0001663127 
## ... Similar to previous best
## Run 258 stress 0.02693837 
## ... Procrustes: rmse 0.0001727518  max resid 0.000295796 
## ... Similar to previous best
## Run 259 stress 0.02693831 
## ... Procrustes: rmse 7.517182e-05  max resid 0.0001288073 
## ... Similar to previous best
## Run 260 stress 0.1756177 
## Run 261 stress 0.0269383 
## ... Procrustes: rmse 3.891005e-05  max resid 6.716302e-05 
## ... Similar to previous best
## Run 262 stress 0.02693835 
## ... Procrustes: rmse 0.0001272573  max resid 0.000218114 
## ... Similar to previous best
## Run 263 stress 0.1799051 
## Run 264 stress 0.02693838 
## ... Procrustes: rmse 0.0001736044  max resid 0.0002950519 
## ... Similar to previous best
## Run 265 stress 0.02693834 
## ... Procrustes: rmse 0.0001162459  max resid 0.0001989196 
## ... Similar to previous best
## Run 266 stress 0.0737481 
## Run 267 stress 0.08382829 
## Run 268 stress 0.08382863 
## Run 269 stress 0.08382859 
## Run 270 stress 0.02693839 
## ... Procrustes: rmse 0.0001566867  max resid 0.0002666363 
## ... Similar to previous best
## Run 271 stress 0.02693829 
## ... Procrustes: rmse 5.282251e-05  max resid 8.914433e-05 
## ... Similar to previous best
## Run 272 stress 0.07374808 
## Run 273 stress 0.02693835 
## ... Procrustes: rmse 0.000156552  max resid 0.0002685289 
## ... Similar to previous best
## Run 274 stress 0.02693838 
## ... Procrustes: rmse 0.000181121  max resid 0.0003099844 
## ... Similar to previous best
## Run 275 stress 0.07374806 
## Run 276 stress 0.02693836 
## ... Procrustes: rmse 0.0001332264  max resid 0.0002275165 
## ... Similar to previous best
## Run 277 stress 0.02693836 
## ... Procrustes: rmse 0.0001640304  max resid 0.000281667 
## ... Similar to previous best
## Run 278 stress 0.02693835 
## ... Procrustes: rmse 2.905254e-05  max resid 4.429859e-05 
## ... Similar to previous best
## Run 279 stress 0.02693835 
## ... Procrustes: rmse 0.0001238388  max resid 0.0002119222 
## ... Similar to previous best
## Run 280 stress 0.07374805 
## Run 281 stress 0.073748 
## Run 282 stress 0.02693832 
## ... Procrustes: rmse 9.519709e-05  max resid 0.0001634869 
## ... Similar to previous best
## Run 283 stress 0.08382859 
## Run 284 stress 0.1756177 
## Run 285 stress 0.179905 
## Run 286 stress 0.073748 
## Run 287 stress 0.02693829 
## ... Procrustes: rmse 3.18296e-05  max resid 5.370575e-05 
## ... Similar to previous best
## Run 288 stress 0.179905 
## Run 289 stress 0.0838288 
## Run 290 stress 0.075473 
## Run 291 stress 0.0269383 
## ... Procrustes: rmse 4.023067e-05  max resid 6.94232e-05 
## ... Similar to previous best
## Run 292 stress 0.1862384 
## Run 293 stress 0.0269383 
## ... Procrustes: rmse 8.807622e-05  max resid 0.0001508559 
## ... Similar to previous best
## Run 294 stress 0.1862382 
## Run 295 stress 0.07374801 
## Run 296 stress 0.02693839 
## ... Procrustes: rmse 0.0001850515  max resid 0.0003175961 
## ... Similar to previous best
## Run 297 stress 0.07374801 
## Run 298 stress 0.02693833 
## ... Procrustes: rmse 0.0001278995  max resid 0.0002196794 
## ... Similar to previous best
## Run 299 stress 0.02693835 
## ... Procrustes: rmse 0.0001209061  max resid 0.0002062035 
## ... Similar to previous best
## Run 300 stress 0.07547299 
## Run 301 stress 0.073748 
## Run 302 stress 0.07374809 
## Run 303 stress 0.07547299 
## Run 304 stress 0.179905 
## Run 305 stress 0.07374807 
## Run 306 stress 0.07374801 
## Run 307 stress 0.07374801 
## Run 308 stress 0.02693838 
## ... Procrustes: rmse 0.0001423319  max resid 0.0002448075 
## ... Similar to previous best
## Run 309 stress 0.02693839 
## ... Procrustes: rmse 0.0001639308  max resid 0.0002803417 
## ... Similar to previous best
## Run 310 stress 0.07374801 
## Run 311 stress 0.1889142 
## Run 312 stress 0.07547299 
## Run 313 stress 0.02693831 
## ... Procrustes: rmse 0.0001070463  max resid 0.0001828416 
## ... Similar to previous best
## Run 314 stress 0.02693839 
## ... Procrustes: rmse 0.0001899822  max resid 0.0003246349 
## ... Similar to previous best
## Run 315 stress 0.08382863 
## Run 316 stress 0.07547299 
## Run 317 stress 0.02693831 
## ... Procrustes: rmse 0.0001048561  max resid 0.0001800282 
## ... Similar to previous best
## Run 318 stress 0.02693834 
## ... Procrustes: rmse 0.0001169411  max resid 0.0002003733 
## ... Similar to previous best
## Run 319 stress 0.0269384 
## ... Procrustes: rmse 0.0001473027  max resid 0.0002503848 
## ... Similar to previous best
## Run 320 stress 0.02693835 
## ... Procrustes: rmse 0.0001529038  max resid 0.0002622041 
## ... Similar to previous best
## Run 321 stress 0.02693832 
## ... Procrustes: rmse 0.0001119663  max resid 0.0001914891 
## ... Similar to previous best
## Run 322 stress 0.07374801 
## Run 323 stress 0.07374801 
## Run 324 stress 0.179905 
## Run 325 stress 0.07374815 
## Run 326 stress 0.0269384 
## ... Procrustes: rmse 0.0002021211  max resid 0.0003459581 
## ... Similar to previous best
## Run 327 stress 0.075473 
## Run 328 stress 0.02693844 
## ... Procrustes: rmse 0.0001823841  max resid 0.0003139879 
## ... Similar to previous best
## Run 329 stress 0.08382823 
## Run 330 stress 0.07374803 
## Run 331 stress 0.0269384 
## ... Procrustes: rmse 0.0001958905  max resid 0.000335762 
## ... Similar to previous best
## Run 332 stress 0.02693829 
## ... Procrustes: rmse 2.686215e-05  max resid 4.620787e-05 
## ... Similar to previous best
## Run 333 stress 0.1756177 
## Run 334 stress 0.075473 
## Run 335 stress 0.08382867 
## Run 336 stress 0.08382848 
## Run 337 stress 0.02693829 
## ... Procrustes: rmse 6.473889e-05  max resid 0.0001152779 
## ... Similar to previous best
## Run 338 stress 0.07374805 
## Run 339 stress 0.1862387 
## Run 340 stress 0.07547301 
## Run 341 stress 0.02693831 
## ... Procrustes: rmse 0.0001074001  max resid 0.0001832893 
## ... Similar to previous best
## Run 342 stress 0.07374801 
## Run 343 stress 0.02693837 
## ... Procrustes: rmse 0.0001723104  max resid 0.0002957907 
## ... Similar to previous best
## Run 344 stress 0.1756177 
## Run 345 stress 0.07374802 
## Run 346 stress 0.0269383 
## ... Procrustes: rmse 4.724173e-05  max resid 7.990105e-05 
## ... Similar to previous best
## Run 347 stress 0.07374801 
## Run 348 stress 0.08382828 
## Run 349 stress 0.07374802 
## Run 350 stress 0.1756177 
## Run 351 stress 0.07374811 
## Run 352 stress 0.02693834 
## ... Procrustes: rmse 0.0001373361  max resid 0.0002309669 
## ... Similar to previous best
## Run 353 stress 0.07374801 
## Run 354 stress 0.02693833 
## ... Procrustes: rmse 9.919407e-05  max resid 0.0001703868 
## ... Similar to previous best
## Run 355 stress 0.07374809 
## Run 356 stress 0.02693829 
## ... Procrustes: rmse 5.370788e-05  max resid 9.206045e-05 
## ... Similar to previous best
## Run 357 stress 0.02693831 
## ... Procrustes: rmse 0.0001034713  max resid 0.0001769701 
## ... Similar to previous best
## Run 358 stress 0.02693838 
## ... Procrustes: rmse 0.0001820162  max resid 0.0003120563 
## ... Similar to previous best
## Run 359 stress 0.02693829 
## ... Procrustes: rmse 6.158183e-05  max resid 0.0001045953 
## ... Similar to previous best
## Run 360 stress 0.08382826 
## Run 361 stress 0.02693829 
## ... Procrustes: rmse 5.769839e-05  max resid 9.903037e-05 
## ... Similar to previous best
## Run 362 stress 0.08382846 
## Run 363 stress 0.1756177 
## Run 364 stress 0.02693828 
## ... New best solution
## ... Procrustes: rmse 2.04421e-05  max resid 3.509852e-05 
## ... Similar to previous best
## Run 365 stress 0.1799051 
## Run 366 stress 0.02693832 
## ... Procrustes: rmse 9.803296e-05  max resid 0.0001675924 
## ... Similar to previous best
## Run 367 stress 0.1900877 
## Run 368 stress 0.179905 
## Run 369 stress 0.0269384 
## ... Procrustes: rmse 0.0001759289  max resid 0.0003007863 
## ... Similar to previous best
## Run 370 stress 0.0737481 
## Run 371 stress 0.0269383 
## ... Procrustes: rmse 5.356244e-05  max resid 9.162543e-05 
## ... Similar to previous best
## Run 372 stress 0.07374809 
## Run 373 stress 0.02693835 
## ... Procrustes: rmse 0.0001336107  max resid 0.0002281556 
## ... Similar to previous best
## Run 374 stress 0.07374816 
## Run 375 stress 0.1862385 
## Run 376 stress 0.07547299 
## Run 377 stress 0.0269383 
## ... Procrustes: rmse 6.400672e-05  max resid 0.0001091106 
## ... Similar to previous best
## Run 378 stress 0.02693831 
## ... Procrustes: rmse 8.505314e-05  max resid 0.0001615486 
## ... Similar to previous best
## Run 379 stress 0.0269383 
## ... Procrustes: rmse 6.434923e-05  max resid 0.000110348 
## ... Similar to previous best
## Run 380 stress 0.02693835 
## ... Procrustes: rmse 0.0001484421  max resid 0.0002544351 
## ... Similar to previous best
## Run 381 stress 0.02693839 
## ... Procrustes: rmse 0.0001470184  max resid 0.0002491006 
## ... Similar to previous best
## Run 382 stress 0.07374804 
## Run 383 stress 0.07374809 
## Run 384 stress 0.07374803 
## Run 385 stress 0.02693832 
## ... Procrustes: rmse 0.0001155778  max resid 0.000198893 
## ... Similar to previous best
## Run 386 stress 0.07374808 
## Run 387 stress 0.0269383 
## ... Procrustes: rmse 5.851414e-05  max resid 8.29688e-05 
## ... Similar to previous best
## Run 388 stress 0.2852162 
## Run 389 stress 0.02693829 
## ... Procrustes: rmse 2.834796e-05  max resid 4.767245e-05 
## ... Similar to previous best
## Run 390 stress 0.02693832 
## ... Procrustes: rmse 8.885859e-05  max resid 0.0001520677 
## ... Similar to previous best
## Run 391 stress 0.0737481 
## Run 392 stress 0.02693829 
## ... Procrustes: rmse 5.252668e-05  max resid 8.954037e-05 
## ... Similar to previous best
## Run 393 stress 0.07374802 
## Run 394 stress 0.02693838 
## ... Procrustes: rmse 0.000176509  max resid 0.000302154 
## ... Similar to previous best
## Run 395 stress 0.2852142 
## Run 396 stress 0.1862385 
## Run 397 stress 0.02693841 
## ... Procrustes: rmse 0.0001950606  max resid 0.0003355894 
## ... Similar to previous best
## Run 398 stress 0.08382823 
## Run 399 stress 0.1756177 
## Run 400 stress 0.08382836 
## Run 401 stress 0.02693839 
## ... Procrustes: rmse 0.0001649802  max resid 0.0002811797 
## ... Similar to previous best
## Run 402 stress 0.08382822 
## Run 403 stress 0.0269383 
## ... Procrustes: rmse 8.204868e-05  max resid 0.0001405374 
## ... Similar to previous best
## Run 404 stress 0.08382827 
## Run 405 stress 0.02693831 
## ... Procrustes: rmse 7.258629e-05  max resid 0.0001243059 
## ... Similar to previous best
## Run 406 stress 0.07547299 
## Run 407 stress 0.02693832 
## ... Procrustes: rmse 0.0001053198  max resid 0.0001808109 
## ... Similar to previous best
## Run 408 stress 0.1799051 
## Run 409 stress 0.02693832 
## ... Procrustes: rmse 9.14289e-05  max resid 0.0001566372 
## ... Similar to previous best
## Run 410 stress 0.02693829 
## ... Procrustes: rmse 2.966634e-05  max resid 5.091205e-05 
## ... Similar to previous best
## Run 411 stress 0.0269383 
## ... Procrustes: rmse 7.529185e-05  max resid 0.0001294547 
## ... Similar to previous best
## Run 412 stress 0.07547299 
## Run 413 stress 0.07374803 
## Run 414 stress 0.08382857 
## Run 415 stress 0.02693835 
## ... Procrustes: rmse 0.000130159  max resid 0.0002217989 
## ... Similar to previous best
## Run 416 stress 0.02693831 
## ... Procrustes: rmse 9.737019e-05  max resid 0.0001669011 
## ... Similar to previous best
## Run 417 stress 0.08382857 
## Run 418 stress 0.07374808 
## Run 419 stress 0.02693833 
## ... Procrustes: rmse 0.0001049376  max resid 0.0001783595 
## ... Similar to previous best
## Run 420 stress 0.07374804 
## Run 421 stress 0.02693838 
## ... Procrustes: rmse 0.0001760003  max resid 0.0003023435 
## ... Similar to previous best
## Run 422 stress 0.07374807 
## Run 423 stress 0.2842805 
## Run 424 stress 0.0269383 
## ... Procrustes: rmse 5.362847e-05  max resid 9.38514e-05 
## ... Similar to previous best
## Run 425 stress 0.02693833 
## ... Procrustes: rmse 0.0001012484  max resid 0.0001725704 
## ... Similar to previous best
## Run 426 stress 0.075473 
## Run 427 stress 0.0939192 
## Run 428 stress 0.1889143 
## Run 429 stress 0.1889141 
## Run 430 stress 0.07374807 
## Run 431 stress 0.1756177 
## Run 432 stress 0.02693837 
## ... Procrustes: rmse 0.0001550374  max resid 0.0002647792 
## ... Similar to previous best
## Run 433 stress 0.0269383 
## ... Procrustes: rmse 5.021443e-05  max resid 8.510684e-05 
## ... Similar to previous best
## Run 434 stress 0.02693838 
## ... Procrustes: rmse 0.0001643797  max resid 0.0002807176 
## ... Similar to previous best
## Run 435 stress 0.08382844 
## Run 436 stress 0.07374803 
## Run 437 stress 0.08382866 
## Run 438 stress 0.0838285 
## Run 439 stress 0.07547299 
## Run 440 stress 0.08382831 
## Run 441 stress 0.02693829 
## ... Procrustes: rmse 5.806941e-05  max resid 9.970296e-05 
## ... Similar to previous best
## Run 442 stress 0.07374803 
## Run 443 stress 0.02693829 
## ... Procrustes: rmse 2.168629e-05  max resid 3.784689e-05 
## ... Similar to previous best
## Run 444 stress 0.1889143 
## Run 445 stress 0.073748 
## Run 446 stress 0.02693834 
## ... Procrustes: rmse 0.0001325418  max resid 0.0002280699 
## ... Similar to previous best
## Run 447 stress 0.02693835 
## ... Procrustes: rmse 0.000147173  max resid 0.0002519905 
## ... Similar to previous best
## Run 448 stress 0.07374802 
## Run 449 stress 0.07547301 
## Run 450 stress 0.08382847 
## Run 451 stress 0.02693836 
## ... Procrustes: rmse 0.0001390816  max resid 0.0002384388 
## ... Similar to previous best
## Run 452 stress 0.07547299 
## Run 453 stress 0.02693837 
## ... Procrustes: rmse 0.000159925  max resid 0.0002732947 
## ... Similar to previous best
## Run 454 stress 0.0269384 
## ... Procrustes: rmse 0.0001601368  max resid 0.0002724742 
## ... Similar to previous best
## Run 455 stress 0.0939189 
## Run 456 stress 0.02693839 
## ... Procrustes: rmse 0.0001812591  max resid 0.0003112561 
## ... Similar to previous best
## Run 457 stress 0.02693831 
## ... Procrustes: rmse 7.596784e-05  max resid 0.0001288313 
## ... Similar to previous best
## Run 458 stress 0.07374803 
## Run 459 stress 0.0838285 
## Run 460 stress 0.02693831 
## ... Procrustes: rmse 9.650911e-05  max resid 0.0001653755 
## ... Similar to previous best
## Run 461 stress 0.02693835 
## ... Procrustes: rmse 0.0001366275  max resid 0.0002336874 
## ... Similar to previous best
## Run 462 stress 0.08382849 
## Run 463 stress 0.07547301 
## Run 464 stress 0.1756177 
## Run 465 stress 0.07374811 
## Run 466 stress 0.0838285 
## Run 467 stress 0.073748 
## Run 468 stress 0.179905 
## Run 469 stress 0.07374803 
## Run 470 stress 0.07374808 
## Run 471 stress 0.02693841 
## ... Procrustes: rmse 0.0002030576  max resid 0.0003479584 
## ... Similar to previous best
## Run 472 stress 0.02693839 
## ... Procrustes: rmse 0.0001879307  max resid 0.0003240735 
## ... Similar to previous best
## Run 473 stress 0.07374809 
## Run 474 stress 0.2273964 
## Run 475 stress 0.07374806 
## Run 476 stress 0.02693831 
## ... Procrustes: rmse 9.623369e-05  max resid 0.0001651207 
## ... Similar to previous best
## Run 477 stress 0.02693838 
## ... Procrustes: rmse 0.0001586237  max resid 0.0002710368 
## ... Similar to previous best
## Run 478 stress 0.02693829 
## ... Procrustes: rmse 4.143953e-05  max resid 7.027205e-05 
## ... Similar to previous best
## Run 479 stress 0.0838285 
## Run 480 stress 0.179905 
## Run 481 stress 0.02693833 
## ... Procrustes: rmse 0.0001170094  max resid 0.0001989898 
## ... Similar to previous best
## Run 482 stress 0.07374807 
## Run 483 stress 0.07374807 
## Run 484 stress 0.07374802 
## Run 485 stress 0.0737481 
## Run 486 stress 0.07374803 
## Run 487 stress 0.02693834 
## ... Procrustes: rmse 0.0001134071  max resid 0.0001950423 
## ... Similar to previous best
## Run 488 stress 0.02693834 
## ... Procrustes: rmse 0.000139114  max resid 0.0002379674 
## ... Similar to previous best
## Run 489 stress 0.0269383 
## ... Procrustes: rmse 6.492297e-05  max resid 0.0001119257 
## ... Similar to previous best
## Run 490 stress 0.02693832 
## ... Procrustes: rmse 9.496589e-05  max resid 0.0001622607 
## ... Similar to previous best
## Run 491 stress 0.1756177 
## Run 492 stress 0.0838284 
## Run 493 stress 0.1862388 
## Run 494 stress 0.08382839 
## Run 495 stress 0.07374801 
## Run 496 stress 0.08382844 
## Run 497 stress 0.07374805 
## Run 498 stress 0.02693835 
## ... Procrustes: rmse 0.000117507  max resid 0.0002022616 
## ... Similar to previous best
## Run 499 stress 0.07547299 
## Run 500 stress 0.07374811 
## *** Best solution repeated 55 times
### Environmental
pde_NMDS <- metaMDS(pde_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.06490857 
## Run 1 stress 0.06490859 
## ... Procrustes: rmse 1.171624e-05  max resid 2.736692e-05 
## ... Similar to previous best
## Run 2 stress 0.0649086 
## ... Procrustes: rmse 0.0003525199  max resid 0.0008203691 
## ... Similar to previous best
## Run 3 stress 0.06490846 
## ... New best solution
## ... Procrustes: rmse 0.0002225897  max resid 0.0005173215 
## ... Similar to previous best
## Run 4 stress 0.06490845 
## ... New best solution
## ... Procrustes: rmse 3.933228e-05  max resid 0.0001076566 
## ... Similar to previous best
## Run 5 stress 0.09902366 
## Run 6 stress 0.06490855 
## ... Procrustes: rmse 0.0001336938  max resid 0.0003314655 
## ... Similar to previous best
## Run 7 stress 0.06529102 
## ... Procrustes: rmse 0.01616691  max resid 0.0612721 
## Run 8 stress 0.06529112 
## ... Procrustes: rmse 0.0161393  max resid 0.0611536 
## Run 9 stress 0.06529109 
## ... Procrustes: rmse 0.01619401  max resid 0.06138383 
## Run 10 stress 0.06529099 
## ... Procrustes: rmse 0.01615129  max resid 0.06120888 
## Run 11 stress 0.06490845 
## ... New best solution
## ... Procrustes: rmse 2.422036e-05  max resid 6.025929e-05 
## ... Similar to previous best
## Run 12 stress 0.06529105 
## ... Procrustes: rmse 0.01618526  max resid 0.0613436 
## Run 13 stress 0.06490855 
## ... Procrustes: rmse 0.0001463969  max resid 0.0003343056 
## ... Similar to previous best
## Run 14 stress 0.06490858 
## ... Procrustes: rmse 0.0001481074  max resid 0.0003371748 
## ... Similar to previous best
## Run 15 stress 0.06529094 
## ... Procrustes: rmse 0.01612149  max resid 0.0610812 
## Run 16 stress 0.06490849 
## ... Procrustes: rmse 8.796007e-05  max resid 0.0001896031 
## ... Similar to previous best
## Run 17 stress 0.06529094 
## ... Procrustes: rmse 0.01598213  max resid 0.06050315 
## Run 18 stress 0.08860086 
## Run 19 stress 0.09053737 
## Run 20 stress 0.06490845 
## ... Procrustes: rmse 8.991602e-06  max resid 1.884773e-05 
## ... Similar to previous best
## Run 21 stress 0.0649086 
## ... Procrustes: rmse 9.250952e-05  max resid 0.0002003656 
## ... Similar to previous best
## Run 22 stress 0.09037745 
## Run 23 stress 0.06529105 
## ... Procrustes: rmse 0.01617585  max resid 0.06130555 
## Run 24 stress 0.08847899 
## Run 25 stress 0.06490845 
## ... Procrustes: rmse 8.358769e-06  max resid 2.202549e-05 
## ... Similar to previous best
## Run 26 stress 0.06529093 
## ... Procrustes: rmse 0.01611872  max resid 0.06106991 
## Run 27 stress 0.06490845 
## ... Procrustes: rmse 1.494631e-05  max resid 4.118268e-05 
## ... Similar to previous best
## Run 28 stress 0.06529095 
## ... Procrustes: rmse 0.01612332  max resid 0.06108827 
## Run 29 stress 0.06529098 
## ... Procrustes: rmse 0.01615018  max resid 0.06119932 
## Run 30 stress 0.09560193 
## Run 31 stress 0.06490849 
## ... Procrustes: rmse 8.449573e-05  max resid 0.000208369 
## ... Similar to previous best
## Run 32 stress 0.06490855 
## ... Procrustes: rmse 0.0001466737  max resid 0.0003312868 
## ... Similar to previous best
## Run 33 stress 0.06529091 
## ... Procrustes: rmse 0.01608909  max resid 0.06094817 
## Run 34 stress 0.06490848 
## ... Procrustes: rmse 7.315598e-05  max resid 0.0001602197 
## ... Similar to previous best
## Run 35 stress 0.0652909 
## ... Procrustes: rmse 0.01603934  max resid 0.06074128 
## Run 36 stress 0.06529098 
## ... Procrustes: rmse 0.01614609  max resid 0.06118199 
## Run 37 stress 0.06529107 
## ... Procrustes: rmse 0.01617624  max resid 0.06130691 
## Run 38 stress 0.06490846 
## ... Procrustes: rmse 3.032502e-05  max resid 8.060161e-05 
## ... Similar to previous best
## Run 39 stress 0.06529096 
## ... Procrustes: rmse 0.01612397  max resid 0.06109247 
## Run 40 stress 0.06529101 
## ... Procrustes: rmse 0.01616342  max resid 0.0612538 
## Run 41 stress 0.06529106 
## ... Procrustes: rmse 0.0161873  max resid 0.06135153 
## Run 42 stress 0.065291 
## ... Procrustes: rmse 0.0161455  max resid 0.06118161 
## Run 43 stress 0.06529101 
## ... Procrustes: rmse 0.01616675  max resid 0.06126744 
## Run 44 stress 0.06490866 
## ... Procrustes: rmse 0.0002085231  max resid 0.0004737599 
## ... Similar to previous best
## Run 45 stress 0.06490845 
## ... New best solution
## ... Procrustes: rmse 3.148372e-06  max resid 9.810483e-06 
## ... Similar to previous best
## Run 46 stress 0.06490846 
## ... Procrustes: rmse 3.704065e-05  max resid 8.223345e-05 
## ... Similar to previous best
## Run 47 stress 0.06529104 
## ... Procrustes: rmse 0.0161783  max resid 0.06131576 
## Run 48 stress 0.06529098 
## ... Procrustes: rmse 0.01614089  max resid 0.06116128 
## Run 49 stress 0.06529094 
## ... Procrustes: rmse 0.01612763  max resid 0.06110715 
## Run 50 stress 0.06490852 
## ... Procrustes: rmse 6.159619e-05  max resid 0.0001424095 
## ... Similar to previous best
## Run 51 stress 0.065291 
## ... Procrustes: rmse 0.01615374  max resid 0.06121465 
## Run 52 stress 0.06490848 
## ... Procrustes: rmse 7.290033e-05  max resid 0.000160731 
## ... Similar to previous best
## Run 53 stress 0.0652911 
## ... Procrustes: rmse 0.01620618  max resid 0.06142999 
## Run 54 stress 0.06490856 
## ... Procrustes: rmse 0.0001499124  max resid 0.0003459655 
## ... Similar to previous best
## Run 55 stress 0.06529095 
## ... Procrustes: rmse 0.01612883  max resid 0.06111176 
## Run 56 stress 0.08860085 
## Run 57 stress 0.06490865 
## ... Procrustes: rmse 0.0002106658  max resid 0.0004804649 
## ... Similar to previous best
## Run 58 stress 0.06490847 
## ... Procrustes: rmse 6.608091e-05  max resid 0.0001496111 
## ... Similar to previous best
## Run 59 stress 0.09890146 
## Run 60 stress 0.06529098 
## ... Procrustes: rmse 0.01614333  max resid 0.06117284 
## Run 61 stress 0.06490846 
## ... Procrustes: rmse 3.053365e-05  max resid 9.712392e-05 
## ... Similar to previous best
## Run 62 stress 0.06490847 
## ... Procrustes: rmse 5.511206e-05  max resid 0.000111535 
## ... Similar to previous best
## Run 63 stress 0.06490846 
## ... Procrustes: rmse 3.626807e-05  max resid 7.908008e-05 
## ... Similar to previous best
## Run 64 stress 0.06529101 
## ... Procrustes: rmse 0.01616405  max resid 0.06125687 
## Run 65 stress 0.09616738 
## Run 66 stress 0.06490845 
## ... Procrustes: rmse 1.678634e-05  max resid 5.518175e-05 
## ... Similar to previous best
## Run 67 stress 0.06490845 
## ... Procrustes: rmse 9.878379e-06  max resid 2.648264e-05 
## ... Similar to previous best
## Run 68 stress 0.06529098 
## ... Procrustes: rmse 0.01614528  max resid 0.06117958 
## Run 69 stress 0.1009564 
## Run 70 stress 0.0649085 
## ... Procrustes: rmse 9.93986e-05  max resid 0.000234634 
## ... Similar to previous best
## Run 71 stress 0.06529099 
## ... Procrustes: rmse 0.01614785  max resid 0.06118927 
## Run 72 stress 0.06490858 
## ... Procrustes: rmse 0.0001621095  max resid 0.0003682846 
## ... Similar to previous best
## Run 73 stress 0.08847896 
## Run 74 stress 0.06490846 
## ... Procrustes: rmse 3.702981e-05  max resid 6.678203e-05 
## ... Similar to previous best
## Run 75 stress 0.06529105 
## ... Procrustes: rmse 0.01616988  max resid 0.06128289 
## Run 76 stress 0.06529089 
## ... Procrustes: rmse 0.01604974  max resid 0.06078334 
## Run 77 stress 0.06490845 
## ... Procrustes: rmse 1.915741e-05  max resid 3.463387e-05 
## ... Similar to previous best
## Run 78 stress 0.06529094 
## ... Procrustes: rmse 0.01612919  max resid 0.0611137 
## Run 79 stress 0.06490855 
## ... Procrustes: rmse 0.0001507114  max resid 0.0003541345 
## ... Similar to previous best
## Run 80 stress 0.06490845 
## ... Procrustes: rmse 1.274966e-05  max resid 2.74848e-05 
## ... Similar to previous best
## Run 81 stress 0.06529089 
## ... Procrustes: rmse 0.01604192  max resid 0.06075299 
## Run 82 stress 0.06529096 
## ... Procrustes: rmse 0.01613063  max resid 0.06111923 
## Run 83 stress 0.06529098 
## ... Procrustes: rmse 0.01610522  max resid 0.06101469 
## Run 84 stress 0.06490845 
## ... Procrustes: rmse 1.377883e-05  max resid 2.817753e-05 
## ... Similar to previous best
## Run 85 stress 0.06490845 
## ... Procrustes: rmse 5.448958e-06  max resid 9.539916e-06 
## ... Similar to previous best
## Run 86 stress 0.06490847 
## ... Procrustes: rmse 3.206674e-05  max resid 5.61202e-05 
## ... Similar to previous best
## Run 87 stress 0.09516608 
## Run 88 stress 0.06490853 
## ... Procrustes: rmse 0.0001290054  max resid 0.000297861 
## ... Similar to previous best
## Run 89 stress 0.06529096 
## ... Procrustes: rmse 0.0161263  max resid 0.06110041 
## Run 90 stress 0.06529099 
## ... Procrustes: rmse 0.01614937  max resid 0.06119539 
## Run 91 stress 0.06529101 
## ... Procrustes: rmse 0.01615448  max resid 0.06121741 
## Run 92 stress 0.09030832 
## Run 93 stress 0.06490846 
## ... Procrustes: rmse 4.696209e-05  max resid 0.0001048201 
## ... Similar to previous best
## Run 94 stress 0.08847896 
## Run 95 stress 0.06490859 
## ... Procrustes: rmse 0.0001766831  max resid 0.0004094304 
## ... Similar to previous best
## Run 96 stress 0.06490847 
## ... Procrustes: rmse 6.427144e-05  max resid 0.000145672 
## ... Similar to previous best
## Run 97 stress 0.06490845 
## ... Procrustes: rmse 1.360464e-05  max resid 2.764295e-05 
## ... Similar to previous best
## Run 98 stress 0.3503473 
## Run 99 stress 0.09030815 
## Run 100 stress 0.06490845 
## ... Procrustes: rmse 2.793803e-05  max resid 5.108919e-05 
## ... Similar to previous best
## Run 101 stress 0.06490852 
## ... Procrustes: rmse 0.0001248661  max resid 0.000284726 
## ... Similar to previous best
## Run 102 stress 0.0649085 
## ... Procrustes: rmse 0.0001008547  max resid 0.0002307343 
## ... Similar to previous best
## Run 103 stress 0.06490845 
## ... Procrustes: rmse 2.278627e-05  max resid 4.152481e-05 
## ... Similar to previous best
## Run 104 stress 0.06490849 
## ... Procrustes: rmse 8.913947e-05  max resid 0.0002111257 
## ... Similar to previous best
## Run 105 stress 0.065291 
## ... Procrustes: rmse 0.01616418  max resid 0.06125787 
## Run 106 stress 0.09516608 
## Run 107 stress 0.06490845 
## ... Procrustes: rmse 6.523751e-06  max resid 1.302807e-05 
## ... Similar to previous best
## Run 108 stress 0.09030815 
## Run 109 stress 0.06529098 
## ... Procrustes: rmse 0.01614974  max resid 0.06119786 
## Run 110 stress 0.06490848 
## ... Procrustes: rmse 8.057876e-05  max resid 0.0001851349 
## ... Similar to previous best
## Run 111 stress 0.08847899 
## Run 112 stress 0.06529094 
## ... Procrustes: rmse 0.01612278  max resid 0.06108724 
## Run 113 stress 0.06490845 
## ... Procrustes: rmse 9.597149e-07  max resid 2.457592e-06 
## ... Similar to previous best
## Run 114 stress 0.09030816 
## Run 115 stress 0.08860086 
## Run 116 stress 0.08847897 
## Run 117 stress 0.06529093 
## ... Procrustes: rmse 0.01598792  max resid 0.06052805 
## Run 118 stress 0.06490845 
## ... Procrustes: rmse 1.191527e-05  max resid 3.694431e-05 
## ... Similar to previous best
## Run 119 stress 0.06490858 
## ... Procrustes: rmse 0.0001657007  max resid 0.0003829699 
## ... Similar to previous best
## Run 120 stress 0.06490846 
## ... Procrustes: rmse 3.456656e-05  max resid 8.158665e-05 
## ... Similar to previous best
## Run 121 stress 0.0957172 
## Run 122 stress 0.06490851 
## ... Procrustes: rmse 0.000112099  max resid 0.0002385307 
## ... Similar to previous best
## Run 123 stress 0.06529101 
## ... Procrustes: rmse 0.01616922  max resid 0.06127863 
## Run 124 stress 0.065291 
## ... Procrustes: rmse 0.01616454  max resid 0.06125925 
## Run 125 stress 0.06490849 
## ... Procrustes: rmse 9.503019e-05  max resid 0.0002093327 
## ... Similar to previous best
## Run 126 stress 0.06490846 
## ... Procrustes: rmse 3.229305e-05  max resid 5.920171e-05 
## ... Similar to previous best
## Run 127 stress 0.06490845 
## ... Procrustes: rmse 3.418168e-06  max resid 9.118518e-06 
## ... Similar to previous best
## Run 128 stress 0.06490856 
## ... Procrustes: rmse 0.0001610096  max resid 0.0003749556 
## ... Similar to previous best
## Run 129 stress 0.06490845 
## ... Procrustes: rmse 2.519554e-05  max resid 6.192021e-05 
## ... Similar to previous best
## Run 130 stress 0.09053735 
## Run 131 stress 0.06529095 
## ... Procrustes: rmse 0.01613393  max resid 0.06113314 
## Run 132 stress 0.06529102 
## ... Procrustes: rmse 0.01616406  max resid 0.06125581 
## Run 133 stress 0.06490852 
## ... Procrustes: rmse 0.0001227839  max resid 0.000278329 
## ... Similar to previous best
## Run 134 stress 0.06490845 
## ... Procrustes: rmse 2.015353e-05  max resid 6.499139e-05 
## ... Similar to previous best
## Run 135 stress 0.06490847 
## ... Procrustes: rmse 6.899293e-05  max resid 0.0001251463 
## ... Similar to previous best
## Run 136 stress 0.06490854 
## ... Procrustes: rmse 0.0001084226  max resid 0.0002504038 
## ... Similar to previous best
## Run 137 stress 0.06529095 
## ... Procrustes: rmse 0.01613255  max resid 0.06112756 
## Run 138 stress 0.09053739 
## Run 139 stress 0.09030825 
## Run 140 stress 0.06490846 
## ... Procrustes: rmse 3.542843e-05  max resid 7.817361e-05 
## ... Similar to previous best
## Run 141 stress 0.06490845 
## ... Procrustes: rmse 1.038759e-05  max resid 2.187019e-05 
## ... Similar to previous best
## Run 142 stress 0.06529105 
## ... Procrustes: rmse 0.01617254  max resid 0.06129395 
## Run 143 stress 0.06529091 
## ... Procrustes: rmse 0.01609554  max resid 0.06097452 
## Run 144 stress 0.06529102 
## ... Procrustes: rmse 0.01616968  max resid 0.06127945 
## Run 145 stress 0.06490849 
## ... Procrustes: rmse 9.239583e-05  max resid 0.0002187083 
## ... Similar to previous best
## Run 146 stress 0.06529097 
## ... Procrustes: rmse 0.01613959  max resid 0.06115644 
## Run 147 stress 0.08847897 
## Run 148 stress 0.06490845 
## ... Procrustes: rmse 6.855143e-06  max resid 1.233423e-05 
## ... Similar to previous best
## Run 149 stress 0.06529103 
## ... Procrustes: rmse 0.01617728  max resid 0.06131157 
## Run 150 stress 0.06490845 
## ... Procrustes: rmse 1.075378e-05  max resid 1.927165e-05 
## ... Similar to previous best
## Run 151 stress 0.06490859 
## ... Procrustes: rmse 0.0001754059  max resid 0.0004052439 
## ... Similar to previous best
## Run 152 stress 0.06529095 
## ... Procrustes: rmse 0.01612861  max resid 0.06111122 
## Run 153 stress 0.06529094 
## ... Procrustes: rmse 0.01612916  max resid 0.06111358 
## Run 154 stress 0.06490846 
## ... Procrustes: rmse 5.21833e-05  max resid 9.344745e-05 
## ... Similar to previous best
## Run 155 stress 0.06490845 
## ... Procrustes: rmse 7.140328e-06  max resid 1.608671e-05 
## ... Similar to previous best
## Run 156 stress 0.06490855 
## ... Procrustes: rmse 0.0001475838  max resid 0.0003418343 
## ... Similar to previous best
## Run 157 stress 0.06529092 
## ... Procrustes: rmse 0.01611124  max resid 0.06103966 
## Run 158 stress 0.06529095 
## ... Procrustes: rmse 0.01612708  max resid 0.061104 
## Run 159 stress 0.09037753 
## Run 160 stress 0.06529092 
## ... Procrustes: rmse 0.01610875  max resid 0.06102915 
## Run 161 stress 0.065291 
## ... Procrustes: rmse 0.01615897  max resid 0.06123653 
## Run 162 stress 0.06490845 
## ... Procrustes: rmse 2.087397e-05  max resid 5.056342e-05 
## ... Similar to previous best
## Run 163 stress 0.06490845 
## ... Procrustes: rmse 1.055763e-05  max resid 1.923335e-05 
## ... Similar to previous best
## Run 164 stress 0.06490849 
## ... Procrustes: rmse 7.982999e-05  max resid 0.0001803656 
## ... Similar to previous best
## Run 165 stress 0.06490859 
## ... Procrustes: rmse 0.0001785224  max resid 0.0004221627 
## ... Similar to previous best
## Run 166 stress 0.06529098 
## ... Procrustes: rmse 0.01614586  max resid 0.06118195 
## Run 167 stress 0.06490845 
## ... Procrustes: rmse 2.337136e-05  max resid 4.808535e-05 
## ... Similar to previous best
## Run 168 stress 0.06529112 
## ... Procrustes: rmse 0.01620607  max resid 0.06143004 
## Run 169 stress 0.06529105 
## ... Procrustes: rmse 0.01618337  max resid 0.06133652 
## Run 170 stress 0.06490846 
## ... Procrustes: rmse 2.643662e-05  max resid 6.971951e-05 
## ... Similar to previous best
## Run 171 stress 0.06529095 
## ... Procrustes: rmse 0.01612261  max resid 0.06108778 
## Run 172 stress 0.06529108 
## ... Procrustes: rmse 0.01619661  max resid 0.06139137 
## Run 173 stress 0.06490845 
## ... Procrustes: rmse 2.008483e-05  max resid 3.565281e-05 
## ... Similar to previous best
## Run 174 stress 0.06490845 
## ... Procrustes: rmse 9.624985e-06  max resid 1.858287e-05 
## ... Similar to previous best
## Run 175 stress 0.06529095 
## ... Procrustes: rmse 0.01606927  max resid 0.06086795 
## Run 176 stress 0.06490847 
## ... Procrustes: rmse 6.708953e-05  max resid 0.0001521513 
## ... Similar to previous best
## Run 177 stress 0.0649085 
## ... Procrustes: rmse 0.0001037907  max resid 0.0002399291 
## ... Similar to previous best
## Run 178 stress 0.06529095 
## ... Procrustes: rmse 0.01613022  max resid 0.06111767 
## Run 179 stress 0.06529096 
## ... Procrustes: rmse 0.01614221  max resid 0.06116749 
## Run 180 stress 0.06490854 
## ... Procrustes: rmse 9.566218e-05  max resid 0.000211582 
## ... Similar to previous best
## Run 181 stress 0.06529109 
## ... Procrustes: rmse 0.01619508  max resid 0.06138408 
## Run 182 stress 0.06490845 
## ... Procrustes: rmse 1.562155e-05  max resid 3.415623e-05 
## ... Similar to previous best
## Run 183 stress 0.09037741 
## Run 184 stress 0.08847898 
## Run 185 stress 0.06529107 
## ... Procrustes: rmse 0.01592623  max resid 0.0602685 
## Run 186 stress 0.06490845 
## ... Procrustes: rmse 2.215023e-05  max resid 5.37075e-05 
## ... Similar to previous best
## Run 187 stress 0.06490846 
## ... Procrustes: rmse 4.159227e-05  max resid 9.494736e-05 
## ... Similar to previous best
## Run 188 stress 0.06490846 
## ... Procrustes: rmse 4.183505e-05  max resid 9.28878e-05 
## ... Similar to previous best
## Run 189 stress 0.06490845 
## ... Procrustes: rmse 9.870548e-06  max resid 1.770359e-05 
## ... Similar to previous best
## Run 190 stress 0.0990237 
## Run 191 stress 0.06529096 
## ... Procrustes: rmse 0.01614026  max resid 0.0611593 
## Run 192 stress 0.06490845 
## ... Procrustes: rmse 2.537615e-05  max resid 4.735262e-05 
## ... Similar to previous best
## Run 193 stress 0.06529102 
## ... Procrustes: rmse 0.01616915  max resid 0.06127779 
## Run 194 stress 0.06490845 
## ... Procrustes: rmse 1.459368e-05  max resid 2.700572e-05 
## ... Similar to previous best
## Run 195 stress 0.08860085 
## Run 196 stress 0.06529091 
## ... Procrustes: rmse 0.01609945  max resid 0.06099104 
## Run 197 stress 0.06490848 
## ... Procrustes: rmse 8.505867e-05  max resid 0.0001943572 
## ... Similar to previous best
## Run 198 stress 0.0652909 
## ... Procrustes: rmse 0.01607473  max resid 0.06088876 
## Run 199 stress 0.09053757 
## Run 200 stress 0.06490852 
## ... Procrustes: rmse 0.0001239789  max resid 0.0002856316 
## ... Similar to previous best
## Run 201 stress 0.09046708 
## Run 202 stress 0.09107433 
## Run 203 stress 0.06490845 
## ... Procrustes: rmse 2.932105e-05  max resid 5.288042e-05 
## ... Similar to previous best
## Run 204 stress 0.09046709 
## Run 205 stress 0.06529111 
## ... Procrustes: rmse 0.01619126  max resid 0.06136645 
## Run 206 stress 0.06529097 
## ... Procrustes: rmse 0.01613174  max resid 0.06112476 
## Run 207 stress 0.06490847 
## ... Procrustes: rmse 4.992741e-05  max resid 0.0001098693 
## ... Similar to previous best
## Run 208 stress 0.06529094 
## ... Procrustes: rmse 0.01612481  max resid 0.06109577 
## Run 209 stress 0.08860085 
## Run 210 stress 0.06490847 
## ... Procrustes: rmse 6.177642e-05  max resid 0.0001401884 
## ... Similar to previous best
## Run 211 stress 0.06529093 
## ... Procrustes: rmse 0.01611619  max resid 0.06105995 
## Run 212 stress 0.06490845 
## ... Procrustes: rmse 2.391667e-05  max resid 5.120275e-05 
## ... Similar to previous best
## Run 213 stress 0.06490848 
## ... Procrustes: rmse 8.043197e-05  max resid 0.000183132 
## ... Similar to previous best
## Run 214 stress 0.06490846 
## ... Procrustes: rmse 2.388852e-05  max resid 5.832107e-05 
## ... Similar to previous best
## Run 215 stress 0.06490854 
## ... Procrustes: rmse 0.000137688  max resid 0.0003170552 
## ... Similar to previous best
## Run 216 stress 0.09030815 
## Run 217 stress 0.06529091 
## ... Procrustes: rmse 0.0160119  max resid 0.06062791 
## Run 218 stress 0.06490852 
## ... Procrustes: rmse 0.0001178329  max resid 0.0002720112 
## ... Similar to previous best
## Run 219 stress 0.09569943 
## Run 220 stress 0.06490847 
## ... Procrustes: rmse 3.695751e-05  max resid 8.102548e-05 
## ... Similar to previous best
## Run 221 stress 0.06490854 
## ... Procrustes: rmse 0.0001402362  max resid 0.0003070139 
## ... Similar to previous best
## Run 222 stress 0.06490845 
## ... Procrustes: rmse 2.179698e-05  max resid 4.420472e-05 
## ... Similar to previous best
## Run 223 stress 0.06529112 
## ... Procrustes: rmse 0.01620118  max resid 0.06140814 
## Run 224 stress 0.0649085 
## ... Procrustes: rmse 9.841684e-05  max resid 0.000196061 
## ... Similar to previous best
## Run 225 stress 0.06529097 
## ... Procrustes: rmse 0.01614631  max resid 0.0611842 
## Run 226 stress 0.06490845 
## ... Procrustes: rmse 2.253242e-05  max resid 4.800823e-05 
## ... Similar to previous best
## Run 227 stress 0.06490848 
## ... Procrustes: rmse 8.15317e-05  max resid 0.0001860156 
## ... Similar to previous best
## Run 228 stress 0.06490846 
## ... Procrustes: rmse 5.001925e-05  max resid 0.0001114312 
## ... Similar to previous best
## Run 229 stress 0.3473543 
## Run 230 stress 0.06529098 
## ... Procrustes: rmse 0.01615428  max resid 0.06121686 
## Run 231 stress 0.06529095 
## ... Procrustes: rmse 0.01612156  max resid 0.0610813 
## Run 232 stress 0.06490855 
## ... Procrustes: rmse 0.0001288857  max resid 0.0002963474 
## ... Similar to previous best
## Run 233 stress 0.06529094 
## ... Procrustes: rmse 0.01612229  max resid 0.06108536 
## Run 234 stress 0.06529113 
## ... Procrustes: rmse 0.01621699  max resid 0.06147462 
## Run 235 stress 0.06490845 
## ... Procrustes: rmse 9.19604e-06  max resid 2.561698e-05 
## ... Similar to previous best
## Run 236 stress 0.06529091 
## ... Procrustes: rmse 0.01608726  max resid 0.06093999 
## Run 237 stress 0.1042408 
## Run 238 stress 0.06490847 
## ... Procrustes: rmse 6.914401e-05  max resid 0.0001681327 
## ... Similar to previous best
## Run 239 stress 0.09030815 
## Run 240 stress 0.06529097 
## ... Procrustes: rmse 0.01614266  max resid 0.06116989 
## Run 241 stress 0.06529098 
## ... Procrustes: rmse 0.01614785  max resid 0.06119008 
## Run 242 stress 0.06490845 
## ... Procrustes: rmse 1.436084e-05  max resid 2.590786e-05 
## ... Similar to previous best
## Run 243 stress 0.09612475 
## Run 244 stress 0.08860086 
## Run 245 stress 0.06490854 
## ... Procrustes: rmse 0.0001220815  max resid 0.0002770525 
## ... Similar to previous best
## Run 246 stress 0.06490858 
## ... Procrustes: rmse 0.0001771783  max resid 0.0004203203 
## ... Similar to previous best
## Run 247 stress 0.06529093 
## ... Procrustes: rmse 0.01610445  max resid 0.06101228 
## Run 248 stress 0.09037745 
## Run 249 stress 0.09647707 
## Run 250 stress 0.06529105 
## ... Procrustes: rmse 0.01617369  max resid 0.06129689 
## Run 251 stress 0.06529097 
## ... Procrustes: rmse 0.0161416  max resid 0.06116516 
## Run 252 stress 0.06490848 
## ... Procrustes: rmse 7.460519e-05  max resid 0.0001695549 
## ... Similar to previous best
## Run 253 stress 0.06490845 
## ... Procrustes: rmse 1.375468e-05  max resid 2.428384e-05 
## ... Similar to previous best
## Run 254 stress 0.06490849 
## ... Procrustes: rmse 9.602501e-05  max resid 0.000219456 
## ... Similar to previous best
## Run 255 stress 0.1012667 
## Run 256 stress 0.08860086 
## Run 257 stress 0.06529092 
## ... Procrustes: rmse 0.01600524  max resid 0.06060009 
## Run 258 stress 0.06490859 
## ... Procrustes: rmse 0.0001742829  max resid 0.0003951157 
## ... Similar to previous best
## Run 259 stress 0.06490846 
## ... Procrustes: rmse 4.129848e-05  max resid 0.0001000721 
## ... Similar to previous best
## Run 260 stress 0.06529093 
## ... Procrustes: rmse 0.01611639  max resid 0.06106087 
## Run 261 stress 0.08847896 
## Run 262 stress 0.06529094 
## ... Procrustes: rmse 0.01598068  max resid 0.06049765 
## Run 263 stress 0.06490845 
## ... Procrustes: rmse 1.474146e-05  max resid 2.6743e-05 
## ... Similar to previous best
## Run 264 stress 0.06490847 
## ... Procrustes: rmse 5.80467e-05  max resid 0.0001311832 
## ... Similar to previous best
## Run 265 stress 0.06529112 
## ... Procrustes: rmse 0.01621145  max resid 0.06145145 
## Run 266 stress 0.06529094 
## ... Procrustes: rmse 0.01612577  max resid 0.06109895 
## Run 267 stress 0.09559703 
## Run 268 stress 0.06490857 
## ... Procrustes: rmse 0.0001592085  max resid 0.0003357353 
## ... Similar to previous best
## Run 269 stress 0.06490853 
## ... Procrustes: rmse 0.0001216803  max resid 0.0002670485 
## ... Similar to previous best
## Run 270 stress 0.1004324 
## Run 271 stress 0.06490845 
## ... Procrustes: rmse 7.690632e-06  max resid 1.67094e-05 
## ... Similar to previous best
## Run 272 stress 0.06490845 
## ... Procrustes: rmse 1.264327e-05  max resid 3.499321e-05 
## ... Similar to previous best
## Run 273 stress 0.06490848 
## ... Procrustes: rmse 6.075693e-05  max resid 0.0001371343 
## ... Similar to previous best
## Run 274 stress 0.06490851 
## ... Procrustes: rmse 6.284112e-05  max resid 0.0001441722 
## ... Similar to previous best
## Run 275 stress 0.1044665 
## Run 276 stress 0.08847898 
## Run 277 stress 0.06490853 
## ... Procrustes: rmse 0.000139519  max resid 0.0003278524 
## ... Similar to previous best
## Run 278 stress 0.08860086 
## Run 279 stress 0.06490847 
## ... Procrustes: rmse 6.608449e-05  max resid 0.0001501591 
## ... Similar to previous best
## Run 280 stress 0.06490849 
## ... Procrustes: rmse 0.0001036136  max resid 0.0002446468 
## ... Similar to previous best
## Run 281 stress 0.101486 
## Run 282 stress 0.06490845 
## ... New best solution
## ... Procrustes: rmse 4.59898e-06  max resid 1.223619e-05 
## ... Similar to previous best
## Run 283 stress 0.06490849 
## ... Procrustes: rmse 9.788746e-05  max resid 0.000227086 
## ... Similar to previous best
## Run 284 stress 0.06529104 
## ... Procrustes: rmse 0.01618065  max resid 0.06132724 
## Run 285 stress 0.06529095 
## ... Procrustes: rmse 0.01612815  max resid 0.06111067 
## Run 286 stress 0.06490845 
## ... Procrustes: rmse 2.310682e-06  max resid 4.067682e-06 
## ... Similar to previous best
## Run 287 stress 0.06490859 
## ... Procrustes: rmse 0.0001756667  max resid 0.0004115659 
## ... Similar to previous best
## Run 288 stress 0.06490845 
## ... Procrustes: rmse 6.945693e-06  max resid 1.607474e-05 
## ... Similar to previous best
## Run 289 stress 0.06490845 
## ... Procrustes: rmse 1.267211e-05  max resid 2.636757e-05 
## ... Similar to previous best
## Run 290 stress 0.06529094 
## ... Procrustes: rmse 0.01601228  max resid 0.06062986 
## Run 291 stress 0.06490854 
## ... Procrustes: rmse 0.000146175  max resid 0.0003419416 
## ... Similar to previous best
## Run 292 stress 0.06490847 
## ... Procrustes: rmse 5.90041e-05  max resid 0.0001380677 
## ... Similar to previous best
## Run 293 stress 0.06490845 
## ... Procrustes: rmse 2.456568e-05  max resid 4.49565e-05 
## ... Similar to previous best
## Run 294 stress 0.06529103 
## ... Procrustes: rmse 0.01616699  max resid 0.06127169 
## Run 295 stress 0.06490845 
## ... Procrustes: rmse 4.40066e-06  max resid 1.013118e-05 
## ... Similar to previous best
## Run 296 stress 0.06529098 
## ... Procrustes: rmse 0.01596212  max resid 0.06042175 
## Run 297 stress 0.06490854 
## ... Procrustes: rmse 0.0001433537  max resid 0.0003340173 
## ... Similar to previous best
## Run 298 stress 0.06490845 
## ... Procrustes: rmse 2.307896e-05  max resid 4.215174e-05 
## ... Similar to previous best
## Run 299 stress 0.09030817 
## Run 300 stress 0.06490846 
## ... Procrustes: rmse 1.447045e-05  max resid 2.775088e-05 
## ... Similar to previous best
## Run 301 stress 0.06490849 
## ... Procrustes: rmse 9.441362e-05  max resid 0.0002201679 
## ... Similar to previous best
## Run 302 stress 0.08860085 
## Run 303 stress 0.06490849 
## ... Procrustes: rmse 9.716477e-05  max resid 0.0002120352 
## ... Similar to previous best
## Run 304 stress 0.06490856 
## ... Procrustes: rmse 0.0001552037  max resid 0.0003626786 
## ... Similar to previous best
## Run 305 stress 0.08847896 
## Run 306 stress 0.1006197 
## Run 307 stress 0.06490846 
## ... Procrustes: rmse 4.738153e-05  max resid 0.0001037799 
## ... Similar to previous best
## Run 308 stress 0.06490854 
## ... Procrustes: rmse 0.0001440084  max resid 0.0003363987 
## ... Similar to previous best
## Run 309 stress 0.0652909 
## ... Procrustes: rmse 0.01602294  max resid 0.06067534 
## Run 310 stress 0.09616734 
## Run 311 stress 0.06490848 
## ... Procrustes: rmse 6.474038e-05  max resid 0.0001186373 
## ... Similar to previous best
## Run 312 stress 0.06490867 
## ... Procrustes: rmse 0.0001950146  max resid 0.0004488454 
## ... Similar to previous best
## Run 313 stress 0.06490849 
## ... Procrustes: rmse 9.090149e-05  max resid 0.0002023816 
## ... Similar to previous best
## Run 314 stress 0.06490852 
## ... Procrustes: rmse 0.0001294204  max resid 0.0003013236 
## ... Similar to previous best
## Run 315 stress 0.06490852 
## ... Procrustes: rmse 0.000110794  max resid 0.0002595624 
## ... Similar to previous best
## Run 316 stress 0.06529105 
## ... Procrustes: rmse 0.01618442  max resid 0.06134106 
## Run 317 stress 0.06490845 
## ... Procrustes: rmse 1.809964e-05  max resid 4.554777e-05 
## ... Similar to previous best
## Run 318 stress 0.06490847 
## ... Procrustes: rmse 5.041033e-05  max resid 0.0001147368 
## ... Similar to previous best
## Run 319 stress 0.06490849 
## ... Procrustes: rmse 9.247872e-05  max resid 0.0002150495 
## ... Similar to previous best
## Run 320 stress 0.0649086 
## ... Procrustes: rmse 0.0001830211  max resid 0.0004272931 
## ... Similar to previous best
## Run 321 stress 0.06490857 
## ... Procrustes: rmse 0.0001649958  max resid 0.0003866595 
## ... Similar to previous best
## Run 322 stress 0.06490847 
## ... Procrustes: rmse 6.838179e-05  max resid 0.0001598929 
## ... Similar to previous best
## Run 323 stress 0.06490853 
## ... Procrustes: rmse 0.0001226723  max resid 0.0002847649 
## ... Similar to previous best
## Run 324 stress 0.06490852 
## ... Procrustes: rmse 0.0001146288  max resid 0.0002642052 
## ... Similar to previous best
## Run 325 stress 0.06490845 
## ... Procrustes: rmse 2.248543e-05  max resid 5.31548e-05 
## ... Similar to previous best
## Run 326 stress 0.06490845 
## ... Procrustes: rmse 1.242906e-05  max resid 3.411353e-05 
## ... Similar to previous best
## Run 327 stress 0.06490845 
## ... Procrustes: rmse 1.041702e-05  max resid 1.916389e-05 
## ... Similar to previous best
## Run 328 stress 0.08860086 
## Run 329 stress 0.0652909 
## ... Procrustes: rmse 0.01602778  max resid 0.06069522 
## Run 330 stress 0.06529096 
## ... Procrustes: rmse 0.01613473  max resid 0.06113833 
## Run 331 stress 0.06490852 
## ... Procrustes: rmse 0.0001235552  max resid 0.0002874039 
## ... Similar to previous best
## Run 332 stress 0.06490845 
## ... Procrustes: rmse 7.029082e-06  max resid 1.922239e-05 
## ... Similar to previous best
## Run 333 stress 0.06529093 
## ... Procrustes: rmse 0.01612409  max resid 0.06109357 
## Run 334 stress 0.06490847 
## ... Procrustes: rmse 6.766611e-05  max resid 0.0001576712 
## ... Similar to previous best
## Run 335 stress 0.06529108 
## ... Procrustes: rmse 0.01619778  max resid 0.06139709 
## Run 336 stress 0.06529108 
## ... Procrustes: rmse 0.0162013  max resid 0.06141107 
## Run 337 stress 0.06490847 
## ... Procrustes: rmse 6.975592e-05  max resid 0.0001638154 
## ... Similar to previous best
## Run 338 stress 0.06529109 
## ... Procrustes: rmse 0.01619274  max resid 0.06137771 
## Run 339 stress 0.06529095 
## ... Procrustes: rmse 0.01613419  max resid 0.06113525 
## Run 340 stress 0.06490845 
## ... Procrustes: rmse 6.198972e-06  max resid 1.457158e-05 
## ... Similar to previous best
## Run 341 stress 0.06529094 
## ... Procrustes: rmse 0.01611516  max resid 0.06105693 
## Run 342 stress 0.0652909 
## ... Procrustes: rmse 0.01609085  max resid 0.06095692 
## Run 343 stress 0.06490845 
## ... Procrustes: rmse 1.27748e-05  max resid 2.892359e-05 
## ... Similar to previous best
## Run 344 stress 0.06490846 
## ... Procrustes: rmse 3.769807e-05  max resid 8.57841e-05 
## ... Similar to previous best
## Run 345 stress 0.09030821 
## Run 346 stress 0.06490847 
## ... Procrustes: rmse 6.776085e-05  max resid 0.0001569015 
## ... Similar to previous best
## Run 347 stress 0.06529097 
## ... Procrustes: rmse 0.01614551  max resid 0.06118217 
## Run 348 stress 0.06490852 
## ... Procrustes: rmse 0.0001210273  max resid 0.000283435 
## ... Similar to previous best
## Run 349 stress 0.06490846 
## ... Procrustes: rmse 4.588987e-05  max resid 0.0001072308 
## ... Similar to previous best
## Run 350 stress 0.06490845 
## ... Procrustes: rmse 5.017301e-06  max resid 1.704941e-05 
## ... Similar to previous best
## Run 351 stress 0.06529098 
## ... Procrustes: rmse 0.01615035  max resid 0.06120272 
## Run 352 stress 0.0652911 
## ... Procrustes: rmse 0.01618799  max resid 0.06135778 
## Run 353 stress 0.06529102 
## ... Procrustes: rmse 0.0161735  max resid 0.0612982 
## Run 354 stress 0.06529091 
## ... Procrustes: rmse 0.01609939  max resid 0.06099133 
## Run 355 stress 0.06490855 
## ... Procrustes: rmse 0.0001462309  max resid 0.0003400873 
## ... Similar to previous best
## Run 356 stress 0.06529097 
## ... Procrustes: rmse 0.01596541  max resid 0.06043514 
## Run 357 stress 0.06490845 
## ... Procrustes: rmse 6.914206e-06  max resid 1.273173e-05 
## ... Similar to previous best
## Run 358 stress 0.06490845 
## ... Procrustes: rmse 1.099616e-05  max resid 2.382034e-05 
## ... Similar to previous best
## Run 359 stress 0.06490845 
## ... Procrustes: rmse 6.341959e-06  max resid 1.986658e-05 
## ... Similar to previous best
## Run 360 stress 0.065291 
## ... Procrustes: rmse 0.01616666  max resid 0.06126913 
## Run 361 stress 0.06529096 
## ... Procrustes: rmse 0.01614358  max resid 0.06117418 
## Run 362 stress 0.06490845 
## ... Procrustes: rmse 1.421816e-05  max resid 4.251231e-05 
## ... Similar to previous best
## Run 363 stress 0.06529096 
## ... Procrustes: rmse 0.01614155  max resid 0.0611666 
## Run 364 stress 0.06490859 
## ... Procrustes: rmse 0.0001593046  max resid 0.0003713543 
## ... Similar to previous best
## Run 365 stress 0.06529096 
## ... Procrustes: rmse 0.01614445  max resid 0.0611779 
## Run 366 stress 0.1010491 
## Run 367 stress 0.06490847 
## ... Procrustes: rmse 5.832675e-05  max resid 0.0001197253 
## ... Similar to previous best
## Run 368 stress 0.06490845 
## ... Procrustes: rmse 3.67181e-06  max resid 9.072643e-06 
## ... Similar to previous best
## Run 369 stress 0.09046706 
## Run 370 stress 0.06529096 
## ... Procrustes: rmse 0.01614205  max resid 0.0611679 
## Run 371 stress 0.06529095 
## ... Procrustes: rmse 0.01613233  max resid 0.06112802 
## Run 372 stress 0.06490845 
## ... Procrustes: rmse 1.709764e-05  max resid 4.062381e-05 
## ... Similar to previous best
## Run 373 stress 0.06529111 
## ... Procrustes: rmse 0.01619792  max resid 0.06139883 
## Run 374 stress 0.06490845 
## ... Procrustes: rmse 2.140484e-05  max resid 3.956117e-05 
## ... Similar to previous best
## Run 375 stress 0.06529096 
## ... Procrustes: rmse 0.01597127  max resid 0.06046001 
## Run 376 stress 0.06529097 
## ... Procrustes: rmse 0.01614561  max resid 0.06118247 
## Run 377 stress 0.06490849 
## ... Procrustes: rmse 9.474995e-05  max resid 0.000225368 
## ... Similar to previous best
## Run 378 stress 0.09030815 
## Run 379 stress 0.09836078 
## Run 380 stress 0.06529099 
## ... Procrustes: rmse 0.01615324  max resid 0.06121359 
## Run 381 stress 0.06490845 
## ... Procrustes: rmse 8.38568e-06  max resid 1.974247e-05 
## ... Similar to previous best
## Run 382 stress 0.06490845 
## ... Procrustes: rmse 1.784932e-05  max resid 4.099768e-05 
## ... Similar to previous best
## Run 383 stress 0.06490846 
## ... Procrustes: rmse 5.085367e-05  max resid 0.0001177814 
## ... Similar to previous best
## Run 384 stress 0.06529102 
## ... Procrustes: rmse 0.01616859  max resid 0.06127836 
## Run 385 stress 0.06529102 
## ... Procrustes: rmse 0.01615297  max resid 0.06121502 
## Run 386 stress 0.0652909 
## ... Procrustes: rmse 0.01604201  max resid 0.06075456 
## Run 387 stress 0.06529094 
## ... Procrustes: rmse 0.01612386  max resid 0.06109347 
## Run 388 stress 0.09046711 
## Run 389 stress 0.0652909 
## ... Procrustes: rmse 0.01604198  max resid 0.06075275 
## Run 390 stress 0.09053742 
## Run 391 stress 0.06490849 
## ... Procrustes: rmse 8.129905e-05  max resid 0.0001859734 
## ... Similar to previous best
## Run 392 stress 0.09030816 
## Run 393 stress 0.06490854 
## ... Procrustes: rmse 0.0001411942  max resid 0.0003258857 
## ... Similar to previous best
## Run 394 stress 0.06529091 
## ... Procrustes: rmse 0.01609228  max resid 0.06096161 
## Run 395 stress 0.06490845 
## ... Procrustes: rmse 6.664103e-06  max resid 1.810331e-05 
## ... Similar to previous best
## Run 396 stress 0.06490845 
## ... Procrustes: rmse 1.088063e-05  max resid 2.506386e-05 
## ... Similar to previous best
## Run 397 stress 0.06529112 
## ... Procrustes: rmse 0.01621232  max resid 0.06145616 
## Run 398 stress 0.06490848 
## ... Procrustes: rmse 7.651668e-05  max resid 0.0001780299 
## ... Similar to previous best
## Run 399 stress 0.06490845 
## ... Procrustes: rmse 1.444953e-05  max resid 4.904029e-05 
## ... Similar to previous best
## Run 400 stress 0.06490855 
## ... Procrustes: rmse 6.912106e-05  max resid 0.0001450519 
## ... Similar to previous best
## Run 401 stress 0.06490851 
## ... Procrustes: rmse 0.0001104725  max resid 0.0002574078 
## ... Similar to previous best
## Run 402 stress 0.06529096 
## ... Procrustes: rmse 0.01614086  max resid 0.06116298 
## Run 403 stress 0.06529101 
## ... Procrustes: rmse 0.01594294  max resid 0.06034091 
## Run 404 stress 0.06490845 
## ... Procrustes: rmse 1.954495e-05  max resid 4.556731e-05 
## ... Similar to previous best
## Run 405 stress 0.06490846 
## ... Procrustes: rmse 4.504501e-05  max resid 8.213364e-05 
## ... Similar to previous best
## Run 406 stress 0.06490845 
## ... Procrustes: rmse 1.035843e-05  max resid 2.449957e-05 
## ... Similar to previous best
## Run 407 stress 0.06490845 
## ... Procrustes: rmse 1.287075e-05  max resid 3.299114e-05 
## ... Similar to previous best
## Run 408 stress 0.06529098 
## ... Procrustes: rmse 0.01615423  max resid 0.061218 
## Run 409 stress 0.08860085 
## Run 410 stress 0.06529099 
## ... Procrustes: rmse 0.01616161  max resid 0.06124839 
## Run 411 stress 0.06490862 
## ... Procrustes: rmse 0.0001847756  max resid 0.0004254095 
## ... Similar to previous best
## Run 412 stress 0.09612473 
## Run 413 stress 0.06490846 
## ... Procrustes: rmse 4.368373e-05  max resid 8.991787e-05 
## ... Similar to previous best
## Run 414 stress 0.06529103 
## ... Procrustes: rmse 0.01617969  max resid 0.06132219 
## Run 415 stress 0.08860085 
## Run 416 stress 0.06490847 
## ... Procrustes: rmse 4.39256e-05  max resid 9.701e-05 
## ... Similar to previous best
## Run 417 stress 0.06490845 
## ... Procrustes: rmse 1.188133e-05  max resid 2.563286e-05 
## ... Similar to previous best
## Run 418 stress 0.06490846 
## ... Procrustes: rmse 1.946029e-05  max resid 4.299367e-05 
## ... Similar to previous best
## Run 419 stress 0.09046705 
## Run 420 stress 0.08860085 
## Run 421 stress 0.06490845 
## ... Procrustes: rmse 6.851523e-06  max resid 1.290742e-05 
## ... Similar to previous best
## Run 422 stress 0.06490845 
## ... Procrustes: rmse 2.424275e-05  max resid 6.194228e-05 
## ... Similar to previous best
## Run 423 stress 0.09037739 
## Run 424 stress 0.06490847 
## ... Procrustes: rmse 6.242683e-05  max resid 0.0001455538 
## ... Similar to previous best
## Run 425 stress 0.06529106 
## ... Procrustes: rmse 0.01619211  max resid 0.06137355 
## Run 426 stress 0.0904671 
## Run 427 stress 0.06490845 
## ... Procrustes: rmse 4.07057e-06  max resid 8.365557e-06 
## ... Similar to previous best
## Run 428 stress 0.06490849 
## ... Procrustes: rmse 9.108773e-05  max resid 0.0002125466 
## ... Similar to previous best
## Run 429 stress 0.06490845 
## ... Procrustes: rmse 2.837358e-05  max resid 6.669249e-05 
## ... Similar to previous best
## Run 430 stress 0.06490846 
## ... Procrustes: rmse 3.907122e-05  max resid 9.02799e-05 
## ... Similar to previous best
## Run 431 stress 0.06529097 
## ... Procrustes: rmse 0.01614799  max resid 0.06119215 
## Run 432 stress 0.08847896 
## Run 433 stress 0.08860086 
## Run 434 stress 0.06490846 
## ... Procrustes: rmse 5.747997e-05  max resid 0.0001361831 
## ... Similar to previous best
## Run 435 stress 0.06490845 
## ... Procrustes: rmse 1.832952e-05  max resid 4.32469e-05 
## ... Similar to previous best
## Run 436 stress 0.08860085 
## Run 437 stress 0.06490847 
## ... Procrustes: rmse 5.211329e-05  max resid 0.0001223772 
## ... Similar to previous best
## Run 438 stress 0.09046707 
## Run 439 stress 0.06490848 
## ... Procrustes: rmse 8.06255e-05  max resid 0.000167368 
## ... Similar to previous best
## Run 440 stress 0.06529105 
## ... Procrustes: rmse 0.01618628  max resid 0.06134956 
## Run 441 stress 0.06529093 
## ... Procrustes: rmse 0.01611596  max resid 0.06106037 
## Run 442 stress 0.09046706 
## Run 443 stress 0.06529098 
## ... Procrustes: rmse 0.01614984  max resid 0.0611995 
## Run 444 stress 0.06490849 
## ... Procrustes: rmse 9.958064e-05  max resid 0.0002164381 
## ... Similar to previous best
## Run 445 stress 0.06490861 
## ... Procrustes: rmse 0.0001767711  max resid 0.000411037 
## ... Similar to previous best
## Run 446 stress 0.06490846 
## ... Procrustes: rmse 3.550594e-05  max resid 8.464201e-05 
## ... Similar to previous best
## Run 447 stress 0.06490845 
## ... Procrustes: rmse 1.89143e-05  max resid 3.463361e-05 
## ... Similar to previous best
## Run 448 stress 0.06529108 
## ... Procrustes: rmse 0.01619673  max resid 0.06139372 
## Run 449 stress 0.06490847 
## ... Procrustes: rmse 6.454463e-05  max resid 0.0001505683 
## ... Similar to previous best
## Run 450 stress 0.06529097 
## ... Procrustes: rmse 0.01614616  max resid 0.06118514 
## Run 451 stress 0.06490858 
## ... Procrustes: rmse 0.0001653152  max resid 0.0003798854 
## ... Similar to previous best
## Run 452 stress 0.08860086 
## Run 453 stress 0.08860086 
## Run 454 stress 0.06490846 
## ... Procrustes: rmse 1.460056e-05  max resid 2.882042e-05 
## ... Similar to previous best
## Run 455 stress 0.06490845 
## ... Procrustes: rmse 1.675723e-05  max resid 3.861723e-05 
## ... Similar to previous best
## Run 456 stress 0.09660071 
## Run 457 stress 0.06529095 
## ... Procrustes: rmse 0.01613424  max resid 0.06113576 
## Run 458 stress 0.06529104 
## ... Procrustes: rmse 0.01618098  max resid 0.06132857 
## Run 459 stress 0.06529098 
## ... Procrustes: rmse 0.01615562  max resid 0.06122383 
## Run 460 stress 0.06529092 
## ... Procrustes: rmse 0.0161068  max resid 0.06102258 
## Run 461 stress 0.06490848 
## ... Procrustes: rmse 7.896744e-05  max resid 0.0001786979 
## ... Similar to previous best
## Run 462 stress 0.06490852 
## ... Procrustes: rmse 0.0001270852  max resid 0.0002979114 
## ... Similar to previous best
## Run 463 stress 0.06529093 
## ... Procrustes: rmse 0.01611723  max resid 0.06106552 
## Run 464 stress 0.09030823 
## Run 465 stress 0.09053737 
## Run 466 stress 0.06529104 
## ... Procrustes: rmse 0.01618266  max resid 0.06133539 
## Run 467 stress 0.06490846 
## ... Procrustes: rmse 5.34998e-05  max resid 0.0001250213 
## ... Similar to previous best
## Run 468 stress 0.06529093 
## ... Procrustes: rmse 0.01612116  max resid 0.06108201 
## Run 469 stress 0.09053736 
## Run 470 stress 0.06529107 
## ... Procrustes: rmse 0.01619149  max resid 0.0613718 
## Run 471 stress 0.06529104 
## ... Procrustes: rmse 0.01617388  max resid 0.06129805 
## Run 472 stress 0.06529096 
## ... Procrustes: rmse 0.01613827  max resid 0.06115179 
## Run 473 stress 0.06529108 
## ... Procrustes: rmse 0.01591674  max resid 0.06023223 
## Run 474 stress 0.09030815 
## Run 475 stress 0.06529097 
## ... Procrustes: rmse 0.01614582  max resid 0.06118302 
## Run 476 stress 0.06490849 
## ... Procrustes: rmse 9.88838e-05  max resid 0.0002220912 
## ... Similar to previous best
## Run 477 stress 0.06490845 
## ... Procrustes: rmse 2.769236e-05  max resid 5.966389e-05 
## ... Similar to previous best
## Run 478 stress 0.06529103 
## ... Procrustes: rmse 0.01617659  max resid 0.06131025 
## Run 479 stress 0.06529092 
## ... Procrustes: rmse 0.01611112  max resid 0.06104027 
## Run 480 stress 0.06490845 
## ... Procrustes: rmse 8.525083e-06  max resid 1.588955e-05 
## ... Similar to previous best
## Run 481 stress 0.06490849 
## ... Procrustes: rmse 3.011706e-05  max resid 7.582828e-05 
## ... Similar to previous best
## Run 482 stress 0.06490846 
## ... Procrustes: rmse 5.340674e-05  max resid 0.0001241809 
## ... Similar to previous best
## Run 483 stress 0.06529095 
## ... Procrustes: rmse 0.01612383  max resid 0.06109314 
## Run 484 stress 0.06529106 
## ... Procrustes: rmse 0.01619083  max resid 0.06136838 
## Run 485 stress 0.06529092 
## ... Procrustes: rmse 0.01610785  max resid 0.06102673 
## Run 486 stress 0.06490845 
## ... Procrustes: rmse 2.547236e-06  max resid 8.341152e-06 
## ... Similar to previous best
## Run 487 stress 0.09651763 
## Run 488 stress 0.06490853 
## ... Procrustes: rmse 0.000129654  max resid 0.0003036392 
## ... Similar to previous best
## Run 489 stress 0.06490849 
## ... Procrustes: rmse 9.22273e-05  max resid 0.0002139116 
## ... Similar to previous best
## Run 490 stress 0.06490845 
## ... Procrustes: rmse 3.140989e-05  max resid 7.418681e-05 
## ... Similar to previous best
## Run 491 stress 0.06490846 
## ... Procrustes: rmse 3.800127e-05  max resid 8.813583e-05 
## ... Similar to previous best
## Run 492 stress 0.06490845 
## ... Procrustes: rmse 2.50324e-05  max resid 4.917032e-05 
## ... Similar to previous best
## Run 493 stress 0.08847897 
## Run 494 stress 0.09107474 
## Run 495 stress 0.0652909 
## ... Procrustes: rmse 0.01603187  max resid 0.06071235 
## Run 496 stress 0.06529089 
## ... Procrustes: rmse 0.0160573  max resid 0.06081576 
## Run 497 stress 0.09053743 
## Run 498 stress 0.06490849 
## ... Procrustes: rmse 9.657472e-05  max resid 0.0002255936 
## ... Similar to previous best
## Run 499 stress 0.06490845 
## ... Procrustes: rmse 1.294089e-05  max resid 3.057914e-05 
## ... Similar to previous best
## Run 500 stress 0.06529091 
## ... Procrustes: rmse 0.01609971  max resid 0.06099331 
## *** Best solution repeated 111 times
# Mixed and stratified lakes
pdems_NMDS <- metaMDS(pdems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.05254584 
## Run 1 stress 0.05164056 
## ... New best solution
## ... Procrustes: rmse 0.03098962  max resid 0.1084405 
## Run 2 stress 0.0606983 
## Run 3 stress 0.06045999 
## Run 4 stress 0.0607548 
## Run 5 stress 0.06296546 
## Run 6 stress 0.06139661 
## Run 7 stress 0.06296553 
## Run 8 stress 0.0667384 
## Run 9 stress 0.05986303 
## Run 10 stress 0.06953364 
## Run 11 stress 0.06852391 
## Run 12 stress 0.07009202 
## Run 13 stress 0.05919885 
## Run 14 stress 0.05919865 
## Run 15 stress 0.05164046 
## ... New best solution
## ... Procrustes: rmse 9.517256e-05  max resid 0.0002119089 
## ... Similar to previous best
## Run 16 stress 0.06069813 
## Run 17 stress 0.06069813 
## Run 18 stress 0.06047314 
## Run 19 stress 0.0604733 
## Run 20 stress 0.06139663 
## Run 21 stress 0.06887255 
## Run 22 stress 0.07696098 
## Run 23 stress 0.06737709 
## Run 24 stress 0.05164045 
## ... New best solution
## ... Procrustes: rmse 1.071083e-05  max resid 2.684688e-05 
## ... Similar to previous best
## Run 25 stress 0.07217828 
## Run 26 stress 0.06501993 
## Run 27 stress 0.06046 
## Run 28 stress 0.06047315 
## Run 29 stress 0.06686144 
## Run 30 stress 0.0583366 
## Run 31 stress 0.05986304 
## Run 32 stress 0.06045996 
## Run 33 stress 0.05919859 
## Run 34 stress 0.06213234 
## Run 35 stress 0.06501995 
## Run 36 stress 0.06495322 
## Run 37 stress 0.05833664 
## Run 38 stress 0.05164055 
## ... Procrustes: rmse 0.0002609661  max resid 0.0006120397 
## ... Similar to previous best
## Run 39 stress 0.06213226 
## Run 40 stress 0.05164049 
## ... Procrustes: rmse 4.641954e-05  max resid 0.0001017607 
## ... Similar to previous best
## Run 41 stress 0.05254589 
## Run 42 stress 0.06045997 
## Run 43 stress 0.06364095 
## Run 44 stress 0.06904439 
## Run 45 stress 0.06197546 
## Run 46 stress 0.05164043 
## ... New best solution
## ... Procrustes: rmse 3.786043e-05  max resid 8.917012e-05 
## ... Similar to previous best
## Run 47 stress 0.05919877 
## Run 48 stress 0.06501991 
## Run 49 stress 0.06197541 
## Run 50 stress 0.06364097 
## Run 51 stress 0.07097704 
## Run 52 stress 0.07049476 
## Run 53 stress 0.05164048 
## ... Procrustes: rmse 6.967701e-05  max resid 0.0001583409 
## ... Similar to previous best
## Run 54 stress 0.06233269 
## Run 55 stress 0.06501981 
## Run 56 stress 0.07099732 
## Run 57 stress 0.05164046 
## ... Procrustes: rmse 0.0001426453  max resid 0.0003182175 
## ... Similar to previous best
## Run 58 stress 0.06751097 
## Run 59 stress 0.06296551 
## Run 60 stress 0.0721497 
## Run 61 stress 0.06732444 
## Run 62 stress 0.07187085 
## Run 63 stress 0.06045996 
## Run 64 stress 0.07083048 
## Run 65 stress 0.07092776 
## Run 66 stress 0.06045995 
## Run 67 stress 0.06046001 
## Run 68 stress 0.060417 
## Run 69 stress 0.06076604 
## Run 70 stress 0.06364095 
## Run 71 stress 0.06338439 
## Run 72 stress 0.05254587 
## Run 73 stress 0.06467874 
## Run 74 stress 0.05164063 
## ... Procrustes: rmse 0.000156451  max resid 0.0003564699 
## ... Similar to previous best
## Run 75 stress 0.06045998 
## Run 76 stress 0.05882327 
## Run 77 stress 0.05164046 
## ... Procrustes: rmse 4.712733e-05  max resid 0.0001099708 
## ... Similar to previous best
## Run 78 stress 0.06124126 
## Run 79 stress 0.06683359 
## Run 80 stress 0.06762717 
## Run 81 stress 0.0607548 
## Run 82 stress 0.06069821 
## Run 83 stress 0.06501983 
## Run 84 stress 0.06129265 
## Run 85 stress 0.06874203 
## Run 86 stress 0.06705325 
## Run 87 stress 0.06034493 
## Run 88 stress 0.07092775 
## Run 89 stress 0.06075482 
## Run 90 stress 0.05164049 
## ... Procrustes: rmse 7.528464e-05  max resid 0.0001869061 
## ... Similar to previous best
## Run 91 stress 0.06705326 
## Run 92 stress 0.06921958 
## Run 93 stress 0.06495318 
## Run 94 stress 0.06159185 
## Run 95 stress 0.05164056 
## ... Procrustes: rmse 0.0001335615  max resid 0.0003025578 
## ... Similar to previous best
## Run 96 stress 0.06046001 
## Run 97 stress 0.06034497 
## Run 98 stress 0.05882321 
## Run 99 stress 0.06041702 
## Run 100 stress 0.06197567 
## Run 101 stress 0.05164053 
## ... Procrustes: rmse 0.0001150356  max resid 0.0002582073 
## ... Similar to previous best
## Run 102 stress 0.06011618 
## Run 103 stress 0.07092777 
## Run 104 stress 0.07367999 
## Run 105 stress 0.05254591 
## Run 106 stress 0.06495329 
## Run 107 stress 0.05254592 
## Run 108 stress 0.06233269 
## Run 109 stress 0.05164045 
## ... Procrustes: rmse 2.420904e-05  max resid 5.168096e-05 
## ... Similar to previous best
## Run 110 stress 0.05254592 
## Run 111 stress 0.06075479 
## Run 112 stress 0.06737707 
## Run 113 stress 0.07083086 
## Run 114 stress 0.0543584 
## Run 115 stress 0.06364093 
## Run 116 stress 0.05833674 
## Run 117 stress 0.06338441 
## Run 118 stress 0.05164054 
## ... Procrustes: rmse 0.0001207388  max resid 0.0002712632 
## ... Similar to previous best
## Run 119 stress 0.05164052 
## ... Procrustes: rmse 0.0001066453  max resid 0.0002336763 
## ... Similar to previous best
## Run 120 stress 0.06739961 
## Run 121 stress 0.06069817 
## Run 122 stress 0.05882321 
## Run 123 stress 0.05919865 
## Run 124 stress 0.06887266 
## Run 125 stress 0.05435839 
## Run 126 stress 0.05254585 
## Run 127 stress 0.06045997 
## Run 128 stress 0.06683355 
## Run 129 stress 0.05254585 
## Run 130 stress 0.06501991 
## Run 131 stress 0.06495324 
## Run 132 stress 0.06732442 
## Run 133 stress 0.05164047 
## ... Procrustes: rmse 6.111706e-05  max resid 0.000208622 
## ... Similar to previous best
## Run 134 stress 0.05435837 
## Run 135 stress 0.07279466 
## Run 136 stress 0.05164055 
## ... Procrustes: rmse 0.0001295959  max resid 0.0002709153 
## ... Similar to previous best
## Run 137 stress 0.0671188 
## Run 138 stress 0.05164049 
## ... Procrustes: rmse 7.728206e-05  max resid 0.0001771889 
## ... Similar to previous best
## Run 139 stress 0.05986302 
## Run 140 stress 0.07214962 
## Run 141 stress 0.06804697 
## Run 142 stress 0.06501978 
## Run 143 stress 0.06705335 
## Run 144 stress 0.0588232 
## Run 145 stress 0.05254578 
## Run 146 stress 0.06884608 
## Run 147 stress 0.06075486 
## Run 148 stress 0.05164052 
## ... Procrustes: rmse 0.0001011407  max resid 0.0002092684 
## ... Similar to previous best
## Run 149 stress 0.0714146 
## Run 150 stress 0.05833663 
## Run 151 stress 0.05164052 
## ... Procrustes: rmse 0.0001039139  max resid 0.0002364147 
## ... Similar to previous best
## Run 152 stress 0.05164061 
## ... Procrustes: rmse 0.0001645547  max resid 0.0003761209 
## ... Similar to previous best
## Run 153 stress 0.05254587 
## Run 154 stress 0.05882321 
## Run 155 stress 0.05986313 
## Run 156 stress 0.0753221 
## Run 157 stress 0.05833664 
## Run 158 stress 0.06045999 
## Run 159 stress 0.05882329 
## Run 160 stress 0.06686162 
## Run 161 stress 0.06045996 
## Run 162 stress 0.05164046 
## ... Procrustes: rmse 4.735445e-05  max resid 0.0001080575 
## ... Similar to previous best
## Run 163 stress 0.07092778 
## Run 164 stress 0.05925176 
## Run 165 stress 0.06045996 
## Run 166 stress 0.05254593 
## Run 167 stress 0.05986303 
## Run 168 stress 0.05833664 
## Run 169 stress 0.06948381 
## Run 170 stress 0.06884601 
## Run 171 stress 0.07092783 
## Run 172 stress 0.06681501 
## Run 173 stress 0.06237456 
## Run 174 stress 0.0516405 
## ... Procrustes: rmse 9.146285e-05  max resid 0.0002070064 
## ... Similar to previous best
## Run 175 stress 0.06045996 
## Run 176 stress 0.06338442 
## Run 177 stress 0.05254592 
## Run 178 stress 0.06683378 
## Run 179 stress 0.06741529 
## Run 180 stress 0.05254601 
## Run 181 stress 0.06047336 
## Run 182 stress 0.06852403 
## Run 183 stress 0.06139661 
## Run 184 stress 0.06686149 
## Run 185 stress 0.06213231 
## Run 186 stress 0.06069816 
## Run 187 stress 0.05882322 
## Run 188 stress 0.071104 
## Run 189 stress 0.05882331 
## Run 190 stress 0.06495322 
## Run 191 stress 0.05986305 
## Run 192 stress 0.07417943 
## Run 193 stress 0.06296568 
## Run 194 stress 0.06953325 
## Run 195 stress 0.0649533 
## Run 196 stress 0.05986312 
## Run 197 stress 0.06069819 
## Run 198 stress 0.05833664 
## Run 199 stress 0.05882321 
## Run 200 stress 0.07187086 
## Run 201 stress 0.061975 
## Run 202 stress 0.06124123 
## Run 203 stress 0.05164048 
## ... Procrustes: rmse 7.187076e-05  max resid 0.0002307871 
## ... Similar to previous best
## Run 204 stress 0.06069825 
## Run 205 stress 0.05435834 
## Run 206 stress 0.0516405 
## ... Procrustes: rmse 0.0001527361  max resid 0.0003373825 
## ... Similar to previous best
## Run 207 stress 0.05164049 
## ... Procrustes: rmse 7.109276e-05  max resid 0.0001517037 
## ... Similar to previous best
## Run 208 stress 0.06741523 
## Run 209 stress 0.0588232 
## Run 210 stress 0.06213239 
## Run 211 stress 0.06688862 
## Run 212 stress 0.06495323 
## Run 213 stress 0.06197572 
## Run 214 stress 0.06129267 
## Run 215 stress 0.05254597 
## Run 216 stress 0.05254597 
## Run 217 stress 0.06197566 
## Run 218 stress 0.06751082 
## Run 219 stress 0.05254593 
## Run 220 stress 0.05164046 
## ... Procrustes: rmse 5.397242e-05  max resid 0.0001235392 
## ... Similar to previous best
## Run 221 stress 0.05164045 
## ... Procrustes: rmse 0.0001089014  max resid 0.000274831 
## ... Similar to previous best
## Run 222 stress 0.06711896 
## Run 223 stress 0.0623327 
## Run 224 stress 0.07187086 
## Run 225 stress 0.05164057 
## ... Procrustes: rmse 0.0001426958  max resid 0.0003258264 
## ... Similar to previous best
## Run 226 stress 0.05833671 
## Run 227 stress 0.05254584 
## Run 228 stress 0.05164045 
## ... Procrustes: rmse 0.0001240121  max resid 0.0002495575 
## ... Similar to previous best
## Run 229 stress 0.06197543 
## Run 230 stress 0.06645973 
## Run 231 stress 0.06069815 
## Run 232 stress 0.06797299 
## Run 233 stress 0.06045996 
## Run 234 stress 0.05254578 
## Run 235 stress 0.05986306 
## Run 236 stress 0.05164052 
## ... Procrustes: rmse 0.0001374049  max resid 0.0002851103 
## ... Similar to previous best
## Run 237 stress 0.06296549 
## Run 238 stress 0.05919885 
## Run 239 stress 0.05254589 
## Run 240 stress 0.05254583 
## Run 241 stress 0.05164045 
## ... Procrustes: rmse 2.557779e-05  max resid 5.71182e-05 
## ... Similar to previous best
## Run 242 stress 0.05986302 
## Run 243 stress 0.06213228 
## Run 244 stress 0.06495321 
## Run 245 stress 0.0588232 
## Run 246 stress 0.0583366 
## Run 247 stress 0.05164044 
## ... Procrustes: rmse 1.813991e-05  max resid 4.115094e-05 
## ... Similar to previous best
## Run 248 stress 0.0603449 
## Run 249 stress 0.06739937 
## Run 250 stress 0.07097706 
## Run 251 stress 0.05833669 
## Run 252 stress 0.05164054 
## ... Procrustes: rmse 0.000120619  max resid 0.0002759804 
## ... Similar to previous best
## Run 253 stress 0.05164043 
## ... New best solution
## ... Procrustes: rmse 7.633679e-05  max resid 0.0001512195 
## ... Similar to previous best
## Run 254 stress 0.06046 
## Run 255 stress 0.07305242 
## Run 256 stress 0.05435841 
## Run 257 stress 0.06364089 
## Run 258 stress 0.06984346 
## Run 259 stress 0.05986303 
## Run 260 stress 0.05164044 
## ... Procrustes: rmse 8.327983e-05  max resid 0.000165442 
## ... Similar to previous best
## Run 261 stress 0.0516405 
## ... Procrustes: rmse 0.0001620477  max resid 0.0003184768 
## ... Similar to previous best
## Run 262 stress 0.06011618 
## Run 263 stress 0.05164054 
## ... Procrustes: rmse 0.0001884223  max resid 0.0003784223 
## ... Similar to previous best
## Run 264 stress 0.05164044 
## ... Procrustes: rmse 8.255705e-05  max resid 0.000163305 
## ... Similar to previous best
## Run 265 stress 0.06705322 
## Run 266 stress 0.07092777 
## Run 267 stress 0.05254577 
## Run 268 stress 0.0588232 
## Run 269 stress 0.05833669 
## Run 270 stress 0.05833665 
## Run 271 stress 0.05986304 
## Run 272 stress 0.05833662 
## Run 273 stress 0.05925178 
## Run 274 stress 0.05164046 
## ... Procrustes: rmse 0.0001235711  max resid 0.0002378331 
## ... Similar to previous best
## Run 275 stress 0.06842835 
## Run 276 stress 0.06686153 
## Run 277 stress 0.05254596 
## Run 278 stress 0.06069826 
## Run 279 stress 0.05254582 
## Run 280 stress 0.06197539 
## Run 281 stress 0.06041701 
## Run 282 stress 0.06034489 
## Run 283 stress 0.05164042 
## ... New best solution
## ... Procrustes: rmse 3.264351e-05  max resid 6.642585e-05 
## ... Similar to previous best
## Run 284 stress 0.05882321 
## Run 285 stress 0.06034497 
## Run 286 stress 0.05833664 
## Run 287 stress 0.06904461 
## Run 288 stress 0.06197536 
## Run 289 stress 0.06076578 
## Run 290 stress 0.06495321 
## Run 291 stress 0.06045998 
## Run 292 stress 0.06034493 
## Run 293 stress 0.06069821 
## Run 294 stress 0.05164058 
## ... Procrustes: rmse 0.0001984978  max resid 0.0004465646 
## ... Similar to previous best
## Run 295 stress 0.06705326 
## Run 296 stress 0.05833662 
## Run 297 stress 0.05164044 
## ... Procrustes: rmse 5.783559e-05  max resid 0.0001892404 
## ... Similar to previous best
## Run 298 stress 0.06495321 
## Run 299 stress 0.0588232 
## Run 300 stress 0.06047326 
## Run 301 stress 0.05986307 
## Run 302 stress 0.06852388 
## Run 303 stress 0.07049481 
## Run 304 stress 0.06645961 
## Run 305 stress 0.05164048 
## ... Procrustes: rmse 0.0001161492  max resid 0.0002609516 
## ... Similar to previous best
## Run 306 stress 0.06495328 
## Run 307 stress 0.07417947 
## Run 308 stress 0.05833663 
## Run 309 stress 0.07227081 
## Run 310 stress 0.07083084 
## Run 311 stress 0.06501986 
## Run 312 stress 0.05254588 
## Run 313 stress 0.05164059 
## ... Procrustes: rmse 0.0002044316  max resid 0.0004618716 
## ... Similar to previous best
## Run 314 stress 0.06296573 
## Run 315 stress 0.05164054 
## ... Procrustes: rmse 0.0001708953  max resid 0.0003845137 
## ... Similar to previous best
## Run 316 stress 0.05833661 
## Run 317 stress 0.0607548 
## Run 318 stress 0.05164045 
## ... Procrustes: rmse 8.592858e-05  max resid 0.0001932511 
## ... Similar to previous best
## Run 319 stress 0.06159188 
## Run 320 stress 0.07350645 
## Run 321 stress 0.0621324 
## Run 322 stress 0.07219913 
## Run 323 stress 0.05833662 
## Run 324 stress 0.06233276 
## Run 325 stress 0.06011618 
## Run 326 stress 0.05919862 
## Run 327 stress 0.05254609 
## Run 328 stress 0.06842831 
## Run 329 stress 0.06046006 
## Run 330 stress 0.0516406 
## ... Procrustes: rmse 0.0001849486  max resid 0.0004110825 
## ... Similar to previous best
## Run 331 stress 0.06047326 
## Run 332 stress 0.0658153 
## Run 333 stress 0.06011619 
## Run 334 stress 0.0587359 
## Run 335 stress 0.06047317 
## Run 336 stress 0.06075489 
## Run 337 stress 0.05833668 
## Run 338 stress 0.06737705 
## Run 339 stress 0.06034489 
## Run 340 stress 0.05833669 
## Run 341 stress 0.05833666 
## Run 342 stress 0.06711886 
## Run 343 stress 0.06129263 
## Run 344 stress 0.07009201 
## Run 345 stress 0.0709771 
## Run 346 stress 0.0604732 
## Run 347 stress 0.05164049 
## ... Procrustes: rmse 0.0001308622  max resid 0.0002934268 
## ... Similar to previous best
## Run 348 stress 0.068047 
## Run 349 stress 0.06739931 
## Run 350 stress 0.05254594 
## Run 351 stress 0.05435835 
## Run 352 stress 0.07265265 
## Run 353 stress 0.07305238 
## Run 354 stress 0.05164044 
## ... Procrustes: rmse 7.513309e-05  max resid 0.0001675824 
## ... Similar to previous best
## Run 355 stress 0.05164047 
## ... Procrustes: rmse 0.0001003218  max resid 0.0002009942 
## ... Similar to previous best
## Run 356 stress 0.05833663 
## Run 357 stress 0.06296569 
## Run 358 stress 0.06034492 
## Run 359 stress 0.05254584 
## Run 360 stress 0.05833675 
## Run 361 stress 0.06069813 
## Run 362 stress 0.05435837 
## Run 363 stress 0.0516405 
## ... Procrustes: rmse 0.0001374511  max resid 0.0003085218 
## ... Similar to previous best
## Run 364 stress 0.06338459 
## Run 365 stress 0.0607548 
## Run 366 stress 0.05164044 
## ... Procrustes: rmse 6.966261e-05  max resid 0.0001544007 
## ... Similar to previous best
## Run 367 stress 0.06732448 
## Run 368 stress 0.05986303 
## Run 369 stress 0.07092777 
## Run 370 stress 0.06495324 
## Run 371 stress 0.05164052 
## ... Procrustes: rmse 0.000155852  max resid 0.0003492378 
## ... Similar to previous best
## Run 372 stress 0.06495321 
## Run 373 stress 0.05833665 
## Run 374 stress 0.05435839 
## Run 375 stress 0.07187086 
## Run 376 stress 0.06047329 
## Run 377 stress 0.06454834 
## Run 378 stress 0.07256818 
## Run 379 stress 0.05833673 
## Run 380 stress 0.06904437 
## Run 381 stress 0.06495322 
## Run 382 stress 0.05164054 
## ... Procrustes: rmse 0.0001751838  max resid 0.0003942175 
## ... Similar to previous best
## Run 383 stress 0.05164043 
## ... Procrustes: rmse 2.809514e-05  max resid 5.070456e-05 
## ... Similar to previous best
## Run 384 stress 0.05925145 
## Run 385 stress 0.05164047 
## ... Procrustes: rmse 0.000115909  max resid 0.000262362 
## ... Similar to previous best
## Run 386 stress 0.07299887 
## Run 387 stress 0.05164045 
## ... Procrustes: rmse 8.278255e-05  max resid 0.0001859987 
## ... Similar to previous best
## Run 388 stress 0.05254591 
## Run 389 stress 0.05925115 
## Run 390 stress 0.05919858 
## Run 391 stress 0.05833663 
## Run 392 stress 0.06045995 
## Run 393 stress 0.05254594 
## Run 394 stress 0.06069821 
## Run 395 stress 0.05164044 
## ... Procrustes: rmse 6.962052e-05  max resid 0.0001592216 
## ... Similar to previous best
## Run 396 stress 0.06047314 
## Run 397 stress 0.3460975 
## Run 398 stress 0.05164044 
## ... Procrustes: rmse 4.718717e-05  max resid 0.0001169602 
## ... Similar to previous best
## Run 399 stress 0.07202686 
## Run 400 stress 0.06233269 
## Run 401 stress 0.05986306 
## Run 402 stress 0.07049495 
## Run 403 stress 0.06673864 
## Run 404 stress 0.05164043 
## ... Procrustes: rmse 3.478087e-05  max resid 5.719011e-05 
## ... Similar to previous best
## Run 405 stress 0.05254591 
## Run 406 stress 0.06874201 
## Run 407 stress 0.06045995 
## Run 408 stress 0.06683359 
## Run 409 stress 0.05925152 
## Run 410 stress 0.06197501 
## Run 411 stress 0.06495326 
## Run 412 stress 0.05164042 
## ... Procrustes: rmse 1.217591e-05  max resid 3.338891e-05 
## ... Similar to previous best
## Run 413 stress 0.06124123 
## Run 414 stress 0.05833668 
## Run 415 stress 0.05833662 
## Run 416 stress 0.06011618 
## Run 417 stress 0.05882321 
## Run 418 stress 0.05254583 
## Run 419 stress 0.05164055 
## ... Procrustes: rmse 0.0001780741  max resid 0.0004018458 
## ... Similar to previous best
## Run 420 stress 0.05435837 
## Run 421 stress 0.05164048 
## ... Procrustes: rmse 0.0001175478  max resid 0.0002660725 
## ... Similar to previous best
## Run 422 stress 0.05254581 
## Run 423 stress 0.0588232 
## Run 424 stress 0.05254595 
## Run 425 stress 0.05254598 
## Run 426 stress 0.060417 
## Run 427 stress 0.07256822 
## Run 428 stress 0.06045995 
## Run 429 stress 0.05986311 
## Run 430 stress 0.06034489 
## Run 431 stress 0.06981706 
## Run 432 stress 0.07187086 
## Run 433 stress 0.05882321 
## Run 434 stress 0.06705336 
## Run 435 stress 0.06045998 
## Run 436 stress 0.06852392 
## Run 437 stress 0.06045999 
## Run 438 stress 0.06296544 
## Run 439 stress 0.0619757 
## Run 440 stress 0.07417947 
## Run 441 stress 0.0636409 
## Run 442 stress 0.05925174 
## Run 443 stress 0.05833663 
## Run 444 stress 0.06045996 
## Run 445 stress 0.05254578 
## Run 446 stress 0.07305238 
## Run 447 stress 0.06069816 
## Run 448 stress 0.06237429 
## Run 449 stress 0.06233269 
## Run 450 stress 0.06213239 
## Run 451 stress 0.06069818 
## Run 452 stress 0.0607654 
## Run 453 stress 0.05435835 
## Run 454 stress 0.06741529 
## Run 455 stress 0.07415316 
## Run 456 stress 0.06069817 
## Run 457 stress 0.06737697 
## Run 458 stress 0.06981692 
## Run 459 stress 0.06495319 
## Run 460 stress 0.05164057 
## ... Procrustes: rmse 0.000194936  max resid 0.0004393789 
## ... Similar to previous best
## Run 461 stress 0.06904439 
## Run 462 stress 0.06296552 
## Run 463 stress 0.06705314 
## Run 464 stress 0.07049483 
## Run 465 stress 0.06011618 
## Run 466 stress 0.05882321 
## Run 467 stress 0.06981714 
## Run 468 stress 0.06045996 
## Run 469 stress 0.06197536 
## Run 470 stress 0.06501977 
## Run 471 stress 0.05986305 
## Run 472 stress 0.06495328 
## Run 473 stress 0.0588232 
## Run 474 stress 0.07141462 
## Run 475 stress 0.06296555 
## Run 476 stress 0.05254582 
## Run 477 stress 0.05833665 
## Run 478 stress 0.06011618 
## Run 479 stress 0.07202675 
## Run 480 stress 0.06087817 
## Run 481 stress 0.05164049 
## ... Procrustes: rmse 0.0001276127  max resid 0.0002875181 
## ... Similar to previous best
## Run 482 stress 0.06045997 
## Run 483 stress 0.05833665 
## Run 484 stress 0.07256819 
## Run 485 stress 0.06197504 
## Run 486 stress 0.06233269 
## Run 487 stress 0.0543584 
## Run 488 stress 0.05164059 
## ... Procrustes: rmse 0.000180306  max resid 0.0004030514 
## ... Similar to previous best
## Run 489 stress 0.06139664 
## Run 490 stress 0.07299888 
## Run 491 stress 0.06159183 
## Run 492 stress 0.05833662 
## Run 493 stress 0.05986306 
## Run 494 stress 0.05164046 
## ... Procrustes: rmse 0.0001051809  max resid 0.0002340216 
## ... Similar to previous best
## Run 495 stress 0.05164042 
## ... Procrustes: rmse 1.34332e-05  max resid 3.082632e-05 
## ... Similar to previous best
## Run 496 stress 0.05164053 
## ... Procrustes: rmse 0.0001655925  max resid 0.0003709751 
## ... Similar to previous best
## Run 497 stress 0.05164042 
## ... New best solution
## ... Procrustes: rmse 8.959587e-06  max resid 2.641724e-05 
## ... Similar to previous best
## Run 498 stress 0.06495327 
## Run 499 stress 0.06826172 
## Run 500 stress 0.06233269 
## *** Best solution repeated 1 times
# Ocean sites and mixed lakes
pdeom_NMDS <- metaMDS(pdeom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.07947529 
## Run 1 stress 0.0794767 
## ... Procrustes: rmse 0.005157121  max resid 0.01243623 
## Run 2 stress 0.07947678 
## ... Procrustes: rmse 0.005096456  max resid 0.01228501 
## Run 3 stress 0.07947646 
## ... Procrustes: rmse 0.006199677  max resid 0.0150551 
## Run 4 stress 0.07947531 
## ... Procrustes: rmse 6.863664e-05  max resid 0.0001661852 
## ... Similar to previous best
## Run 5 stress 0.07947531 
## ... Procrustes: rmse 8.225189e-05  max resid 0.0002009549 
## ... Similar to previous best
## Run 6 stress 0.3160766 
## Run 7 stress 0.07947532 
## ... Procrustes: rmse 9.735671e-05  max resid 0.0002342267 
## ... Similar to previous best
## Run 8 stress 0.07947531 
## ... Procrustes: rmse 0.0002150205  max resid 0.0005231264 
## ... Similar to previous best
## Run 9 stress 0.07947532 
## ... Procrustes: rmse 0.0001046149  max resid 0.0002537269 
## ... Similar to previous best
## Run 10 stress 0.07947531 
## ... Procrustes: rmse 6.47162e-05  max resid 0.000157365 
## ... Similar to previous best
## Run 11 stress 0.07947529 
## ... Procrustes: rmse 3.375251e-05  max resid 8.059501e-05 
## ... Similar to previous best
## Run 12 stress 0.07947643 
## ... Procrustes: rmse 0.00614378  max resid 0.01491713 
## Run 13 stress 0.07947869 
## ... Procrustes: rmse 0.003638903  max resid 0.008691486 
## ... Similar to previous best
## Run 14 stress 0.0794753 
## ... Procrustes: rmse 4.452205e-05  max resid 0.000106122 
## ... Similar to previous best
## Run 15 stress 0.07947528 
## ... New best solution
## ... Procrustes: rmse 1.15184e-05  max resid 2.081387e-05 
## ... Similar to previous best
## Run 16 stress 0.3403702 
## Run 17 stress 0.07947652 
## ... Procrustes: rmse 0.006262769  max resid 0.01521456 
## Run 18 stress 0.07947535 
## ... Procrustes: rmse 0.000150822  max resid 0.0003691662 
## ... Similar to previous best
## Run 19 stress 0.07947651 
## ... Procrustes: rmse 0.005361743  max resid 0.01295043 
## Run 20 stress 0.07947529 
## ... Procrustes: rmse 4.255306e-05  max resid 0.0001048272 
## ... Similar to previous best
## Run 21 stress 0.07947649 
## ... Procrustes: rmse 0.006202073  max resid 0.01506333 
## Run 22 stress 0.07947637 
## ... Procrustes: rmse 0.006053651  max resid 0.01468863 
## Run 23 stress 0.07947739 
## ... Procrustes: rmse 0.004566473  max resid 0.01095274 
## Run 24 stress 0.07947631 
## ... Procrustes: rmse 0.005850646  max resid 0.01417833 
## Run 25 stress 0.0794754 
## ... Procrustes: rmse 0.0002150619  max resid 0.0005230213 
## ... Similar to previous best
## Run 26 stress 0.07947528 
## ... New best solution
## ... Procrustes: rmse 3.955847e-05  max resid 9.360453e-05 
## ... Similar to previous best
## Run 27 stress 0.3262953 
## Run 28 stress 0.07947529 
## ... Procrustes: rmse 7.14085e-05  max resid 0.0001738276 
## ... Similar to previous best
## Run 29 stress 0.07947649 
## ... Procrustes: rmse 0.006189477  max resid 0.01503183 
## Run 30 stress 0.07947638 
## ... Procrustes: rmse 0.006004656  max resid 0.01456956 
## Run 31 stress 0.3042249 
## Run 32 stress 0.07947532 
## ... Procrustes: rmse 0.0001116604  max resid 0.0002721202 
## ... Similar to previous best
## Run 33 stress 0.07947528 
## ... Procrustes: rmse 2.688824e-05  max resid 6.466252e-05 
## ... Similar to previous best
## Run 34 stress 0.07947649 
## ... Procrustes: rmse 0.005389445  max resid 0.01302009 
## Run 35 stress 0.07947529 
## ... Procrustes: rmse 4.768672e-05  max resid 0.0001151854 
## ... Similar to previous best
## Run 36 stress 0.07947635 
## ... Procrustes: rmse 0.005979259  max resid 0.01450302 
## Run 37 stress 0.07947528 
## ... Procrustes: rmse 3.41688e-05  max resid 8.35367e-05 
## ... Similar to previous best
## Run 38 stress 0.0794765 
## ... Procrustes: rmse 0.006180683  max resid 0.01500836 
## Run 39 stress 0.07947529 
## ... Procrustes: rmse 7.683367e-05  max resid 0.0001866126 
## ... Similar to previous best
## Run 40 stress 0.07947534 
## ... Procrustes: rmse 0.0001833099  max resid 0.0004470428 
## ... Similar to previous best
## Run 41 stress 0.07947632 
## ... Procrustes: rmse 0.005739691  max resid 0.01390103 
## Run 42 stress 0.3407338 
## Run 43 stress 0.07947643 
## ... Procrustes: rmse 0.005440519  max resid 0.01315053 
## Run 44 stress 0.1966885 
## Run 45 stress 0.0794765 
## ... Procrustes: rmse 0.006200345  max resid 0.0150589 
## Run 46 stress 0.3174257 
## Run 47 stress 0.07947528 
## ... New best solution
## ... Procrustes: rmse 2.365111e-05  max resid 5.596386e-05 
## ... Similar to previous best
## Run 48 stress 0.07947639 
## ... Procrustes: rmse 0.006038297  max resid 0.01465388 
## Run 49 stress 0.07947531 
## ... Procrustes: rmse 5.757784e-05  max resid 0.0001438273 
## ... Similar to previous best
## Run 50 stress 0.07947648 
## ... Procrustes: rmse 0.006101489  max resid 0.01481229 
## Run 51 stress 0.07947682 
## ... Procrustes: rmse 0.004971863  max resid 0.01197579 
## Run 52 stress 0.07947644 
## ... Procrustes: rmse 0.00610935  max resid 0.014833 
## Run 53 stress 0.07947688 
## ... Procrustes: rmse 0.004989163  max resid 0.0120141 
## Run 54 stress 0.07947531 
## ... Procrustes: rmse 0.000151807  max resid 0.0003694953 
## ... Similar to previous best
## Run 55 stress 0.07947699 
## ... Procrustes: rmse 0.004839267  max resid 0.01164308 
## Run 56 stress 0.07947533 
## ... Procrustes: rmse 0.0001749544  max resid 0.0004260408 
## ... Similar to previous best
## Run 57 stress 0.07947635 
## ... Procrustes: rmse 0.005953591  max resid 0.01444297 
## Run 58 stress 0.07947642 
## ... Procrustes: rmse 0.006091122  max resid 0.01478726 
## Run 59 stress 0.07947649 
## ... Procrustes: rmse 0.006161032  max resid 0.01496296 
## Run 60 stress 0.0794766 
## ... Procrustes: rmse 0.006271439  max resid 0.01524034 
## Run 61 stress 0.07947632 
## ... Procrustes: rmse 0.005725388  max resid 0.01386754 
## Run 62 stress 0.07947535 
## ... Procrustes: rmse 0.0001930832  max resid 0.0004703904 
## ... Similar to previous best
## Run 63 stress 0.07947642 
## ... Procrustes: rmse 0.006082274  max resid 0.01476482 
## Run 64 stress 0.07947529 
## ... Procrustes: rmse 8.442479e-05  max resid 0.0002055281 
## ... Similar to previous best
## Run 65 stress 0.07947893 
## ... Procrustes: rmse 0.002834108  max resid 0.006788327 
## ... Similar to previous best
## Run 66 stress 0.07947528 
## ... Procrustes: rmse 4.065413e-05  max resid 0.0001113175 
## ... Similar to previous best
## Run 67 stress 0.3010202 
## Run 68 stress 0.1916271 
## Run 69 stress 0.1916272 
## Run 70 stress 0.07947643 
## ... Procrustes: rmse 0.006097262  max resid 0.0148032 
## Run 71 stress 0.07947636 
## ... Procrustes: rmse 0.005912115  max resid 0.01433846 
## Run 72 stress 0.07947763 
## ... Procrustes: rmse 0.004333842  max resid 0.01037575 
## Run 73 stress 0.07947763 
## ... Procrustes: rmse 0.004327263  max resid 0.01035919 
## Run 74 stress 0.07947706 
## ... Procrustes: rmse 0.00475878  max resid 0.01144062 
## Run 75 stress 0.07947648 
## ... Procrustes: rmse 0.006158741  max resid 0.01495736 
## Run 76 stress 0.07947632 
## ... Procrustes: rmse 0.0058273  max resid 0.01412608 
## Run 77 stress 0.07947589 
## ... Procrustes: rmse 0.0007258368  max resid 0.001758583 
## ... Similar to previous best
## Run 78 stress 0.0794753 
## ... Procrustes: rmse 0.0001296954  max resid 0.0003160521 
## ... Similar to previous best
## Run 79 stress 0.07947661 
## ... Procrustes: rmse 0.006280938  max resid 0.01526432 
## Run 80 stress 0.07947528 
## ... Procrustes: rmse 2.609069e-05  max resid 6.355538e-05 
## ... Similar to previous best
## Run 81 stress 0.07947531 
## ... Procrustes: rmse 0.0001353014  max resid 0.0003297829 
## ... Similar to previous best
## Run 82 stress 0.07947814 
## ... Procrustes: rmse 0.002010286  max resid 0.004834677 
## ... Similar to previous best
## Run 83 stress 0.07947655 
## ... Procrustes: rmse 0.006226047  max resid 0.01512526 
## Run 84 stress 0.07947645 
## ... Procrustes: rmse 0.006123049  max resid 0.01486766 
## Run 85 stress 0.07947661 
## ... Procrustes: rmse 0.005175186  max resid 0.01248709 
## Run 86 stress 0.0794753 
## ... Procrustes: rmse 0.0001208334  max resid 0.0002944959 
## ... Similar to previous best
## Run 87 stress 0.07947667 
## ... Procrustes: rmse 0.006321844  max resid 0.01536774 
## Run 88 stress 0.07947536 
## ... Procrustes: rmse 0.0002104031  max resid 0.0005120486 
## ... Similar to previous best
## Run 89 stress 0.3174261 
## Run 90 stress 0.07947745 
## ... Procrustes: rmse 0.004464704  max resid 0.01070401 
## Run 91 stress 0.07947673 
## ... Procrustes: rmse 0.005056862  max resid 0.01218965 
## Run 92 stress 0.07947633 
## ... Procrustes: rmse 0.00588678  max resid 0.01427397 
## Run 93 stress 0.07947635 
## ... Procrustes: rmse 0.005933508  max resid 0.01439096 
## Run 94 stress 0.07947646 
## ... Procrustes: rmse 0.006133779  max resid 0.01489584 
## Run 95 stress 0.07947644 
## ... Procrustes: rmse 0.005395704  max resid 0.01304079 
## Run 96 stress 0.07947649 
## ... Procrustes: rmse 0.006142189  max resid 0.01491453 
## Run 97 stress 0.07947799 
## ... Procrustes: rmse 0.004078488  max resid 0.009738111 
## ... Similar to previous best
## Run 98 stress 0.07947531 
## ... Procrustes: rmse 0.0001397961  max resid 0.0003409466 
## ... Similar to previous best
## Run 99 stress 0.07947648 
## ... Procrustes: rmse 0.006158445  max resid 0.01495697 
## Run 100 stress 0.07947771 
## ... Procrustes: rmse 0.00427617  max resid 0.01022875 
## Run 101 stress 0.07947533 
## ... Procrustes: rmse 0.000187699  max resid 0.0004598018 
## ... Similar to previous best
## Run 102 stress 0.07947642 
## ... Procrustes: rmse 0.006092791  max resid 0.01479153 
## Run 103 stress 0.07947658 
## ... Procrustes: rmse 0.006130436  max resid 0.01488886 
## Run 104 stress 0.07947532 
## ... Procrustes: rmse 0.0001644554  max resid 0.0004011173 
## ... Similar to previous best
## Run 105 stress 0.07947897 
## ... Procrustes: rmse 0.003000402  max resid 0.007182038 
## ... Similar to previous best
## Run 106 stress 0.07947657 
## ... Procrustes: rmse 0.005223364  max resid 0.01260766 
## Run 107 stress 0.07947705 
## ... Procrustes: rmse 0.004779137  max resid 0.01149374 
## Run 108 stress 0.07947529 
## ... Procrustes: rmse 8.180201e-05  max resid 0.000198747 
## ... Similar to previous best
## Run 109 stress 0.07947533 
## ... Procrustes: rmse 0.0002029833  max resid 0.0004936584 
## ... Similar to previous best
## Run 110 stress 0.07947532 
## ... Procrustes: rmse 0.0001536091  max resid 0.0003736681 
## ... Similar to previous best
## Run 111 stress 0.07947532 
## ... Procrustes: rmse 6.084206e-05  max resid 0.0001339292 
## ... Similar to previous best
## Run 112 stress 0.07947644 
## ... Procrustes: rmse 0.006104319  max resid 0.01482068 
## Run 113 stress 0.07947632 
## ... Procrustes: rmse 0.005846441  max resid 0.01417292 
## Run 114 stress 0.0794764 
## ... Procrustes: rmse 0.006045088  max resid 0.01467176 
## Run 115 stress 0.07947662 
## ... Procrustes: rmse 0.006286769  max resid 0.01527864 
## Run 116 stress 0.0794772 
## ... Procrustes: rmse 0.004652358  max resid 0.01117356 
## Run 117 stress 0.07947643 
## ... Procrustes: rmse 0.006076635  max resid 0.01475004 
## Run 118 stress 0.07947635 
## ... Procrustes: rmse 0.005944071  max resid 0.01442015 
## Run 119 stress 0.07947729 
## ... Procrustes: rmse 0.004581855  max resid 0.01099608 
## Run 120 stress 0.1916272 
## Run 121 stress 0.07947528 
## ... Procrustes: rmse 1.318573e-05  max resid 3.198178e-05 
## ... Similar to previous best
## Run 122 stress 0.07947695 
## ... Procrustes: rmse 0.004852196  max resid 0.01167526 
## Run 123 stress 0.1916274 
## Run 124 stress 0.07947535 
## ... Procrustes: rmse 0.0002076731  max resid 0.0005063878 
## ... Similar to previous best
## Run 125 stress 0.191627 
## Run 126 stress 0.07947558 
## ... Procrustes: rmse 0.0004912359  max resid 0.001192315 
## ... Similar to previous best
## Run 127 stress 0.07947829 
## ... Procrustes: rmse 0.003874171  max resid 0.009237177 
## ... Similar to previous best
## Run 128 stress 0.07947536 
## ... Procrustes: rmse 0.0002220317  max resid 0.0005384894 
## ... Similar to previous best
## Run 129 stress 0.07947637 
## ... Procrustes: rmse 0.006008469  max resid 0.01457896 
## Run 130 stress 0.07947868 
## ... Procrustes: rmse 0.003580509  max resid 0.008547861 
## ... Similar to previous best
## Run 131 stress 0.1916275 
## Run 132 stress 0.07947653 
## ... Procrustes: rmse 0.006144511  max resid 0.0149198 
## Run 133 stress 0.0794753 
## ... Procrustes: rmse 0.0001206032  max resid 0.000292532 
## ... Similar to previous best
## Run 134 stress 0.07947528 
## ... Procrustes: rmse 2.105059e-05  max resid 5.111519e-05 
## ... Similar to previous best
## Run 135 stress 0.07947534 
## ... Procrustes: rmse 0.0001844589  max resid 0.0004471223 
## ... Similar to previous best
## Run 136 stress 0.07947534 
## ... Procrustes: rmse 0.0001997502  max resid 0.0004871619 
## ... Similar to previous best
## Run 137 stress 0.07947656 
## ... Procrustes: rmse 0.00624041  max resid 0.01516193 
## Run 138 stress 0.07947645 
## ... Procrustes: rmse 0.006122762  max resid 0.01486685 
## Run 139 stress 0.07947687 
## ... Procrustes: rmse 0.004924743  max resid 0.01185742 
## Run 140 stress 0.07947528 
## ... Procrustes: rmse 5.074253e-05  max resid 0.0001228962 
## ... Similar to previous best
## Run 141 stress 0.07947528 
## ... Procrustes: rmse 4.383338e-05  max resid 0.0001066236 
## ... Similar to previous best
## Run 142 stress 0.07947636 
## ... Procrustes: rmse 0.005971075  max resid 0.01448648 
## Run 143 stress 0.07947636 
## ... Procrustes: rmse 0.00598021  max resid 0.01450864 
## Run 144 stress 0.1916275 
## Run 145 stress 0.07947643 
## ... Procrustes: rmse 0.006094211  max resid 0.01479545 
## Run 146 stress 0.0794753 
## ... Procrustes: rmse 0.0001087921  max resid 0.0002636237 
## ... Similar to previous best
## Run 147 stress 0.07947709 
## ... Procrustes: rmse 0.00473997  max resid 0.01139371 
## Run 148 stress 0.07947528 
## ... Procrustes: rmse 5.138918e-05  max resid 0.0001244592 
## ... Similar to previous best
## Run 149 stress 0.07947531 
## ... Procrustes: rmse 0.0001540433  max resid 0.0003756107 
## ... Similar to previous best
## Run 150 stress 0.07947631 
## ... Procrustes: rmse 0.005756876  max resid 0.01394695 
## Run 151 stress 0.07947638 
## ... Procrustes: rmse 0.005997364  max resid 0.01455469 
## Run 152 stress 0.07947646 
## ... Procrustes: rmse 0.006141218  max resid 0.01491315 
## Run 153 stress 0.07947635 
## ... Procrustes: rmse 0.005968381  max resid 0.01447899 
## Run 154 stress 0.07947529 
## ... Procrustes: rmse 9.087961e-05  max resid 0.0002218181 
## ... Similar to previous best
## Run 155 stress 0.07947646 
## ... Procrustes: rmse 0.006121247  max resid 0.01486361 
## Run 156 stress 0.0794765 
## ... Procrustes: rmse 0.006179955  max resid 0.01501212 
## Run 157 stress 0.0794766 
## ... Procrustes: rmse 0.00625702  max resid 0.01520507 
## Run 158 stress 0.07947896 
## ... Procrustes: rmse 0.003126973  max resid 0.007479072 
## ... Similar to previous best
## Run 159 stress 0.07947633 
## ... Procrustes: rmse 0.005883699  max resid 0.01426622 
## Run 160 stress 0.07947643 
## ... Procrustes: rmse 0.006095223  max resid 0.0147981 
## Run 161 stress 0.3125652 
## Run 162 stress 0.07947645 
## ... Procrustes: rmse 0.00612095  max resid 0.01486226 
## Run 163 stress 0.07947529 
## ... Procrustes: rmse 8.455763e-05  max resid 0.000203851 
## ... Similar to previous best
## Run 164 stress 0.07947655 
## ... Procrustes: rmse 0.006231703  max resid 0.01514083 
## Run 165 stress 0.07947532 
## ... Procrustes: rmse 0.0001615421  max resid 0.0003924468 
## ... Similar to previous best
## Run 166 stress 0.07947536 
## ... Procrustes: rmse 0.0002281883  max resid 0.0005566374 
## ... Similar to previous best
## Run 167 stress 0.07947529 
## ... Procrustes: rmse 6.666583e-05  max resid 0.0001623609 
## ... Similar to previous best
## Run 168 stress 0.07947537 
## ... Procrustes: rmse 0.0002416729  max resid 0.0005904099 
## ... Similar to previous best
## Run 169 stress 0.07947528 
## ... Procrustes: rmse 6.267369e-05  max resid 0.0001525504 
## ... Similar to previous best
## Run 170 stress 0.07947632 
## ... Procrustes: rmse 0.005863968  max resid 0.01421673 
## Run 171 stress 0.07947639 
## ... Procrustes: rmse 0.006024666  max resid 0.01462221 
## Run 172 stress 0.07947632 
## ... Procrustes: rmse 0.005829888  max resid 0.01413109 
## Run 173 stress 0.07947635 
## ... Procrustes: rmse 0.005967529  max resid 0.01447681 
## Run 174 stress 0.07947531 
## ... Procrustes: rmse 0.0001438317  max resid 0.0003524523 
## ... Similar to previous best
## Run 175 stress 0.312268 
## Run 176 stress 0.07947759 
## ... Procrustes: rmse 0.004361238  max resid 0.01044373 
## Run 177 stress 0.07947638 
## ... Procrustes: rmse 0.006020277  max resid 0.014608 
## Run 178 stress 0.07947532 
## ... Procrustes: rmse 0.0001570511  max resid 0.0003821103 
## ... Similar to previous best
## Run 179 stress 0.0794765 
## ... Procrustes: rmse 0.006164811  max resid 0.01497304 
## Run 180 stress 0.07947534 
## ... Procrustes: rmse 0.0001993959  max resid 0.0004875734 
## ... Similar to previous best
## Run 181 stress 0.07947638 
## ... Procrustes: rmse 0.006012736  max resid 0.01459051 
## Run 182 stress 0.0794772 
## ... Procrustes: rmse 0.004653397  max resid 0.01117571 
## Run 183 stress 0.07947661 
## ... Procrustes: rmse 0.005181128  max resid 0.01250196 
## Run 184 stress 0.0794753 
## ... Procrustes: rmse 0.000118224  max resid 0.0002889683 
## ... Similar to previous best
## Run 185 stress 0.07947643 
## ... Procrustes: rmse 0.006102019  max resid 0.01481414 
## Run 186 stress 0.07947529 
## ... Procrustes: rmse 7.371221e-05  max resid 0.0001791833 
## ... Similar to previous best
## Run 187 stress 0.07947637 
## ... Procrustes: rmse 0.005995087  max resid 0.01454775 
## Run 188 stress 0.07947764 
## ... Procrustes: rmse 0.004325339  max resid 0.01035501 
## Run 189 stress 0.07947635 
## ... Procrustes: rmse 0.005960084  max resid 0.01445815 
## Run 190 stress 0.07947646 
## ... Procrustes: rmse 0.006082485  max resid 0.01475945 
## Run 191 stress 0.07947867 
## ... Procrustes: rmse 0.002432556  max resid 0.005839147 
## ... Similar to previous best
## Run 192 stress 0.07947663 
## ... Procrustes: rmse 0.006250653  max resid 0.01518988 
## Run 193 stress 0.0794753 
## ... Procrustes: rmse 0.0001135942  max resid 0.0002758111 
## ... Similar to previous best
## Run 194 stress 0.191627 
## Run 195 stress 0.1966883 
## Run 196 stress 0.07947646 
## ... Procrustes: rmse 0.006136156  max resid 0.01489988 
## Run 197 stress 0.07947642 
## ... Procrustes: rmse 0.006089571  max resid 0.01478455 
## Run 198 stress 0.07947655 
## ... Procrustes: rmse 0.006192491  max resid 0.01504195 
## Run 199 stress 0.07947533 
## ... Procrustes: rmse 0.0001838241  max resid 0.0004490332 
## ... Similar to previous best
## Run 200 stress 0.07947531 
## ... Procrustes: rmse 0.0001403939  max resid 0.0003424394 
## ... Similar to previous best
## Run 201 stress 0.07947656 
## ... Procrustes: rmse 0.005237644  max resid 0.01264355 
## Run 202 stress 0.07947641 
## ... Procrustes: rmse 0.00606751  max resid 0.01472645 
## Run 203 stress 0.07947669 
## ... Procrustes: rmse 0.006315379  max resid 0.01535044 
## Run 204 stress 0.07947528 
## ... Procrustes: rmse 1.511119e-05  max resid 3.021116e-05 
## ... Similar to previous best
## Run 205 stress 0.07947531 
## ... Procrustes: rmse 0.000148118  max resid 0.0003605379 
## ... Similar to previous best
## Run 206 stress 0.07947895 
## ... Procrustes: rmse 0.003183198  max resid 0.007613451 
## ... Similar to previous best
## Run 207 stress 0.0794781 
## ... Procrustes: rmse 0.004003632  max resid 0.009553847 
## ... Similar to previous best
## Run 208 stress 0.07947645 
## ... Procrustes: rmse 0.006090208  max resid 0.01478528 
## Run 209 stress 0.07947528 
## ... Procrustes: rmse 3.97266e-05  max resid 9.071665e-05 
## ... Similar to previous best
## Run 210 stress 0.0794754 
## ... Procrustes: rmse 0.0003087694  max resid 0.0007513366 
## ... Similar to previous best
## Run 211 stress 0.07947641 
## ... Procrustes: rmse 0.006068548  max resid 0.01473052 
## Run 212 stress 0.07947638 
## ... Procrustes: rmse 0.005990752  max resid 0.01453431 
## Run 213 stress 0.07947636 
## ... Procrustes: rmse 0.005989307  max resid 0.01453147 
## Run 214 stress 0.07947533 
## ... Procrustes: rmse 0.0001886439  max resid 0.0004601573 
## ... Similar to previous best
## Run 215 stress 0.07947636 
## ... Procrustes: rmse 0.00597353  max resid 0.01449197 
## Run 216 stress 0.07947664 
## ... Procrustes: rmse 0.006281837  max resid 0.01526655 
## Run 217 stress 0.07947895 
## ... Procrustes: rmse 0.002873498  max resid 0.006882121 
## ... Similar to previous best
## Run 218 stress 0.07947635 
## ... Procrustes: rmse 0.005948866  max resid 0.01443027 
## Run 219 stress 0.07947529 
## ... Procrustes: rmse 8.240012e-05  max resid 0.0002012995 
## ... Similar to previous best
## Run 220 stress 0.1916273 
## Run 221 stress 0.1916272 
## Run 222 stress 0.07947728 
## ... Procrustes: rmse 0.004589306  max resid 0.01101475 
## Run 223 stress 0.07947656 
## ... Procrustes: rmse 0.006227032  max resid 0.01512619 
## Run 224 stress 0.07947533 
## ... Procrustes: rmse 0.0001782769  max resid 0.0004329963 
## ... Similar to previous best
## Run 225 stress 0.07947648 
## ... Procrustes: rmse 0.00616097  max resid 0.01496244 
## Run 226 stress 0.07947534 
## ... Procrustes: rmse 0.0001730053  max resid 0.0004229114 
## ... Similar to previous best
## Run 227 stress 0.07947651 
## ... Procrustes: rmse 0.00529486  max resid 0.01278758 
## Run 228 stress 0.07947631 
## ... Procrustes: rmse 0.00580623  max resid 0.01407102 
## Run 229 stress 0.0794753 
## ... Procrustes: rmse 0.0001229204  max resid 0.0002998856 
## ... Similar to previous best
## Run 230 stress 0.3403702 
## Run 231 stress 0.07947635 
## ... Procrustes: rmse 0.005962491  max resid 0.01446524 
## Run 232 stress 0.07947705 
## ... Procrustes: rmse 0.004776356  max resid 0.01148688 
## Run 233 stress 0.0794753 
## ... Procrustes: rmse 0.0001082515  max resid 0.0002638379 
## ... Similar to previous best
## Run 234 stress 0.07947637 
## ... Procrustes: rmse 0.006000473  max resid 0.01455947 
## Run 235 stress 0.07947641 
## ... Procrustes: rmse 0.00607118  max resid 0.01473668 
## Run 236 stress 0.07947531 
## ... Procrustes: rmse 0.0001378014  max resid 0.0003361687 
## ... Similar to previous best
## Run 237 stress 0.07947643 
## ... Procrustes: rmse 0.006091771  max resid 0.01478908 
## Run 238 stress 0.07947636 
## ... Procrustes: rmse 0.005558991  max resid 0.01344853 
## Run 239 stress 0.07947632 
## ... Procrustes: rmse 0.005684256  max resid 0.0137654 
## Run 240 stress 0.07947632 
## ... Procrustes: rmse 0.00584515  max resid 0.01416942 
## Run 241 stress 0.07947643 
## ... Procrustes: rmse 0.006099511  max resid 0.01480839 
## Run 242 stress 0.0794753 
## ... Procrustes: rmse 0.0001202281  max resid 0.0002922616 
## ... Similar to previous best
## Run 243 stress 0.07947729 
## ... Procrustes: rmse 0.004589209  max resid 0.01101472 
## Run 244 stress 0.07947532 
## ... Procrustes: rmse 0.0001286725  max resid 0.0003124597 
## ... Similar to previous best
## Run 245 stress 0.07947642 
## ... Procrustes: rmse 0.006083959  max resid 0.01476868 
## Run 246 stress 0.07947658 
## ... Procrustes: rmse 0.005215405  max resid 0.01258635 
## Run 247 stress 0.07947635 
## ... Procrustes: rmse 0.005944633  max resid 0.01441894 
## Run 248 stress 0.07947528 
## ... Procrustes: rmse 5.054809e-05  max resid 0.0001229967 
## ... Similar to previous best
## Run 249 stress 0.07947533 
## ... Procrustes: rmse 0.0001777622  max resid 0.0004325109 
## ... Similar to previous best
## Run 250 stress 0.07947671 
## ... Procrustes: rmse 0.006354017  max resid 0.01544847 
## Run 251 stress 0.07947668 
## ... Procrustes: rmse 0.006324053  max resid 0.01537332 
## Run 252 stress 0.07947529 
## ... Procrustes: rmse 8.794362e-05  max resid 0.000213902 
## ... Similar to previous best
## Run 253 stress 0.07947655 
## ... Procrustes: rmse 0.006226054  max resid 0.01512645 
## Run 254 stress 0.07947643 
## ... Procrustes: rmse 0.006035701  max resid 0.01464735 
## Run 255 stress 0.07947789 
## ... Procrustes: rmse 0.004146101  max resid 0.009908402 
## ... Similar to previous best
## Run 256 stress 0.07947892 
## ... Procrustes: rmse 0.003261708  max resid 0.007797589 
## ... Similar to previous best
## Run 257 stress 0.07947529 
## ... Procrustes: rmse 9.207698e-05  max resid 0.000224438 
## ... Similar to previous best
## Run 258 stress 0.07947646 
## ... Procrustes: rmse 0.006135031  max resid 0.01489807 
## Run 259 stress 0.07947531 
## ... Procrustes: rmse 0.0001535308  max resid 0.0003732982 
## ... Similar to previous best
## Run 260 stress 0.07947532 
## ... Procrustes: rmse 0.000153663  max resid 0.0003758673 
## ... Similar to previous best
## Run 261 stress 0.07947645 
## ... Procrustes: rmse 0.005402891  max resid 0.01305915 
## Run 262 stress 0.07947591 
## ... Procrustes: rmse 0.0006994105  max resid 0.001696213 
## ... Similar to previous best
## Run 263 stress 0.0794764 
## ... Procrustes: rmse 0.006050834  max resid 0.01468589 
## Run 264 stress 0.07947529 
## ... Procrustes: rmse 7.570365e-05  max resid 0.0001835841 
## ... Similar to previous best
## Run 265 stress 0.07947529 
## ... Procrustes: rmse 0.0001019742  max resid 0.0002482905 
## ... Similar to previous best
## Run 266 stress 0.07947612 
## ... Procrustes: rmse 0.0008710092  max resid 0.002107463 
## ... Similar to previous best
## Run 267 stress 0.07947538 
## ... Procrustes: rmse 0.0002476106  max resid 0.0006041835 
## ... Similar to previous best
## Run 268 stress 0.07947662 
## ... Procrustes: rmse 0.006283697  max resid 0.01527093 
## Run 269 stress 0.07947529 
## ... Procrustes: rmse 7.353046e-05  max resid 0.0001714085 
## ... Similar to previous best
## Run 270 stress 0.07947716 
## ... Procrustes: rmse 0.004681054  max resid 0.01124547 
## Run 271 stress 0.3403702 
## Run 272 stress 0.07947897 
## ... Procrustes: rmse 0.003052368  max resid 0.00730305 
## ... Similar to previous best
## Run 273 stress 0.07947529 
## ... Procrustes: rmse 9.979043e-05  max resid 0.0002422192 
## ... Similar to previous best
## Run 274 stress 0.07947532 
## ... Procrustes: rmse 0.0001547397  max resid 0.0003771393 
## ... Similar to previous best
## Run 275 stress 0.07947649 
## ... Procrustes: rmse 0.006109783  max resid 0.01482919 
## Run 276 stress 0.07947528 
## ... Procrustes: rmse 6.913085e-05  max resid 0.0001679072 
## ... Similar to previous best
## Run 277 stress 0.07947638 
## ... Procrustes: rmse 0.006017514  max resid 0.01460233 
## Run 278 stress 0.07947632 
## ... Procrustes: rmse 0.005692086  max resid 0.01378138 
## Run 279 stress 0.07947528 
## ... Procrustes: rmse 5.00004e-05  max resid 0.0001209948 
## ... Similar to previous best
## Run 280 stress 0.07947642 
## ... Procrustes: rmse 0.006068729  max resid 0.01473206 
## Run 281 stress 0.1916275 
## Run 282 stress 0.07947559 
## ... Procrustes: rmse 0.0005016862  max resid 0.001216443 
## ... Similar to previous best
## Run 283 stress 0.07947664 
## ... Procrustes: rmse 0.005147928  max resid 0.01241698 
## Run 284 stress 0.07947661 
## ... Procrustes: rmse 0.006277989  max resid 0.01525698 
## Run 285 stress 0.07947804 
## ... Procrustes: rmse 0.001960071  max resid 0.004715039 
## ... Similar to previous best
## Run 286 stress 0.07947632 
## ... Procrustes: rmse 0.005840227  max resid 0.01415509 
## Run 287 stress 0.07947638 
## ... Procrustes: rmse 0.006015859  max resid 0.01459931 
## Run 288 stress 0.07947705 
## ... Procrustes: rmse 0.004771657  max resid 0.01147295 
## Run 289 stress 0.0794753 
## ... Procrustes: rmse 0.0001298099  max resid 0.0003161282 
## ... Similar to previous best
## Run 290 stress 0.07947642 
## ... Procrustes: rmse 0.006070398  max resid 0.0147356 
## Run 291 stress 0.07947553 
## ... Procrustes: rmse 0.0004214393  max resid 0.001023881 
## ... Similar to previous best
## Run 292 stress 0.302694 
## Run 293 stress 0.191627 
## Run 294 stress 0.0794756 
## ... Procrustes: rmse 0.0004887262  max resid 0.001185801 
## ... Similar to previous best
## Run 295 stress 0.0794764 
## ... Procrustes: rmse 0.005492649  max resid 0.01328429 
## Run 296 stress 0.07947531 
## ... Procrustes: rmse 0.000139065  max resid 0.0003400145 
## ... Similar to previous best
## Run 297 stress 0.07947661 
## ... Procrustes: rmse 0.006281091  max resid 0.01526491 
## Run 298 stress 0.07947532 
## ... Procrustes: rmse 0.000165918  max resid 0.0004039928 
## ... Similar to previous best
## Run 299 stress 0.07947714 
## ... Procrustes: rmse 0.004724471  max resid 0.01135548 
## Run 300 stress 0.07947529 
## ... Procrustes: rmse 9.145828e-05  max resid 0.0002229512 
## ... Similar to previous best
## Run 301 stress 0.07947637 
## ... Procrustes: rmse 0.00599661  max resid 0.0145497 
## Run 302 stress 0.07947639 
## ... Procrustes: rmse 0.006043807  max resid 0.01466857 
## Run 303 stress 0.07947812 
## ... Procrustes: rmse 0.002007773  max resid 0.004828622 
## ... Similar to previous best
## Run 304 stress 0.07947529 
## ... Procrustes: rmse 8.53221e-05  max resid 0.0002078388 
## ... Similar to previous best
## Run 305 stress 0.07947645 
## ... Procrustes: rmse 0.006119308  max resid 0.0148587 
## Run 306 stress 0.07947532 
## ... Procrustes: rmse 0.000170601  max resid 0.0004160751 
## ... Similar to previous best
## Run 307 stress 0.07947649 
## ... Procrustes: rmse 0.006176068  max resid 0.01500045 
## Run 308 stress 0.07947647 
## ... Procrustes: rmse 0.00615452  max resid 0.01494635 
## Run 309 stress 0.07947661 
## ... Procrustes: rmse 0.00627698  max resid 0.01525431 
## Run 310 stress 0.07947532 
## ... Procrustes: rmse 0.0001461036  max resid 0.0003540607 
## ... Similar to previous best
## Run 311 stress 0.07947776 
## ... Procrustes: rmse 0.004236591  max resid 0.01013367 
## Run 312 stress 0.0794764 
## ... Procrustes: rmse 0.006062637  max resid 0.01471548 
## Run 313 stress 0.0794779 
## ... Procrustes: rmse 0.004144347  max resid 0.009902517 
## ... Similar to previous best
## Run 314 stress 0.07947537 
## ... Procrustes: rmse 0.00023787  max resid 0.0005772207 
## ... Similar to previous best
## Run 315 stress 0.07947736 
## ... Procrustes: rmse 0.004529311  max resid 0.01086393 
## Run 316 stress 0.07947637 
## ... Procrustes: rmse 0.005540737  max resid 0.01340361 
## Run 317 stress 0.1916272 
## Run 318 stress 0.07947664 
## ... Procrustes: rmse 0.006303197  max resid 0.01532053 
## Run 319 stress 0.07947531 
## ... Procrustes: rmse 0.0001447327  max resid 0.0003524904 
## ... Similar to previous best
## Run 320 stress 0.07947635 
## ... Procrustes: rmse 0.005569039  max resid 0.01347628 
## Run 321 stress 0.07947658 
## ... Procrustes: rmse 0.005209553  max resid 0.01257334 
## Run 322 stress 0.07947533 
## ... Procrustes: rmse 0.0001844728  max resid 0.0004499784 
## ... Similar to previous best
## Run 323 stress 0.07947532 
## ... Procrustes: rmse 0.0001567637  max resid 0.000382454 
## ... Similar to previous best
## Run 324 stress 0.191627 
## Run 325 stress 0.07947529 
## ... Procrustes: rmse 8.481425e-05  max resid 0.0002061736 
## ... Similar to previous best
## Run 326 stress 0.07947528 
## ... Procrustes: rmse 1.052151e-05  max resid 2.527079e-05 
## ... Similar to previous best
## Run 327 stress 0.07947528 
## ... Procrustes: rmse 5.645118e-06  max resid 1.121539e-05 
## ... Similar to previous best
## Run 328 stress 0.07947532 
## ... Procrustes: rmse 0.0001713907  max resid 0.0004192548 
## ... Similar to previous best
## Run 329 stress 0.07947666 
## ... Procrustes: rmse 0.006316691  max resid 0.0153545 
## Run 330 stress 0.07947642 
## ... Procrustes: rmse 0.006080854  max resid 0.01476144 
## Run 331 stress 0.07947537 
## ... Procrustes: rmse 0.0002214837  max resid 0.0005406293 
## ... Similar to previous best
## Run 332 stress 0.07947897 
## ... Procrustes: rmse 0.002989514  max resid 0.007153959 
## ... Similar to previous best
## Run 333 stress 0.07947633 
## ... Procrustes: rmse 0.005892048  max resid 0.01428615 
## Run 334 stress 0.07947636 
## ... Procrustes: rmse 0.005980359  max resid 0.01450905 
## Run 335 stress 0.07947649 
## ... Procrustes: rmse 0.006167704  max resid 0.0149784 
## Run 336 stress 0.07947532 
## ... Procrustes: rmse 0.0001625835  max resid 0.0003959472 
## ... Similar to previous best
## Run 337 stress 0.07947529 
## ... Procrustes: rmse 0.0001006183  max resid 0.0002450899 
## ... Similar to previous best
## Run 338 stress 0.1916272 
## Run 339 stress 0.07947532 
## ... Procrustes: rmse 0.000151552  max resid 0.000369433 
## ... Similar to previous best
## Run 340 stress 0.07947633 
## ... Procrustes: rmse 0.005635874  max resid 0.01364375 
## Run 341 stress 0.07947649 
## ... Procrustes: rmse 0.006167092  max resid 0.01497826 
## Run 342 stress 0.07947643 
## ... Procrustes: rmse 0.006082023  max resid 0.01476061 
## Run 343 stress 0.07947529 
## ... Procrustes: rmse 0.0001063822  max resid 0.0002593056 
## ... Similar to previous best
## Run 344 stress 0.07947896 
## ... Procrustes: rmse 0.002868575  max resid 0.006867173 
## ... Similar to previous best
## Run 345 stress 0.07947655 
## ... Procrustes: rmse 0.006223286  max resid 0.01511986 
## Run 346 stress 0.0794753 
## ... Procrustes: rmse 0.0001193411  max resid 0.0002904102 
## ... Similar to previous best
## Run 347 stress 0.0794753 
## ... Procrustes: rmse 0.0001103275  max resid 0.0002681188 
## ... Similar to previous best
## Run 348 stress 0.07947644 
## ... Procrustes: rmse 0.005427863  max resid 0.01312184 
## Run 349 stress 0.07947634 
## ... Procrustes: rmse 0.005920347  max resid 0.01435821 
## Run 350 stress 0.0794766 
## ... Procrustes: rmse 0.006270724  max resid 0.01523841 
## Run 351 stress 0.07947528 
## ... Procrustes: rmse 6.921754e-05  max resid 0.0001683311 
## ... Similar to previous best
## Run 352 stress 0.07947533 
## ... Procrustes: rmse 0.0001882182  max resid 0.000458441 
## ... Similar to previous best
## Run 353 stress 0.07947529 
## ... Procrustes: rmse 7.841605e-05  max resid 0.0001911405 
## ... Similar to previous best
## Run 354 stress 0.07947633 
## ... Procrustes: rmse 0.005655331  max resid 0.01369371 
## Run 355 stress 0.07947644 
## ... Procrustes: rmse 0.006115867  max resid 0.0148496 
## Run 356 stress 0.07947652 
## ... Procrustes: rmse 0.006204275  max resid 0.01507167 
## Run 357 stress 0.07947635 
## ... Procrustes: rmse 0.00595154  max resid 0.01443664 
## Run 358 stress 0.1916271 
## Run 359 stress 0.07947643 
## ... Procrustes: rmse 0.006084363  max resid 0.01476836 
## Run 360 stress 0.07947636 
## ... Procrustes: rmse 0.005978208  max resid 0.01450168 
## Run 361 stress 0.07947529 
## ... Procrustes: rmse 9.447731e-05  max resid 0.0002308798 
## ... Similar to previous best
## Run 362 stress 0.07947532 
## ... Procrustes: rmse 0.0001593373  max resid 0.0003884622 
## ... Similar to previous best
## Run 363 stress 0.07947645 
## ... Procrustes: rmse 0.006129639  max resid 0.01488389 
## Run 364 stress 0.07947654 
## ... Procrustes: rmse 0.005255278  max resid 0.01268826 
## Run 365 stress 0.07947723 
## ... Procrustes: rmse 0.004628708  max resid 0.01111365 
## Run 366 stress 0.07947553 
## ... Procrustes: rmse 0.000449774  max resid 0.001091761 
## ... Similar to previous best
## Run 367 stress 0.07947529 
## ... Procrustes: rmse 0.0001003768  max resid 0.0002443221 
## ... Similar to previous best
## Run 368 stress 0.3174254 
## Run 369 stress 0.07947532 
## ... Procrustes: rmse 0.0001731602  max resid 0.0004224528 
## ... Similar to previous best
## Run 370 stress 0.07947645 
## ... Procrustes: rmse 0.006069134  max resid 0.01472635 
## Run 371 stress 0.07947767 
## ... Procrustes: rmse 0.004301833  max resid 0.01029595 
## Run 372 stress 0.07947529 
## ... Procrustes: rmse 9.076271e-05  max resid 0.0002213528 
## ... Similar to previous best
## Run 373 stress 0.07947665 
## ... Procrustes: rmse 0.005161828  max resid 0.01245317 
## Run 374 stress 0.07947528 
## ... Procrustes: rmse 6.44591e-05  max resid 0.0001567085 
## ... Similar to previous best
## Run 375 stress 0.07947622 
## ... Procrustes: rmse 0.0009343534  max resid 0.002260829 
## ... Similar to previous best
## Run 376 stress 0.07947531 
## ... Procrustes: rmse 0.00015374  max resid 0.0003738698 
## ... Similar to previous best
## Run 377 stress 0.07947647 
## ... Procrustes: rmse 0.006112168  max resid 0.01484291 
## Run 378 stress 0.07947529 
## ... Procrustes: rmse 9.332414e-05  max resid 0.0002268842 
## ... Similar to previous best
## Run 379 stress 0.07947637 
## ... Procrustes: rmse 0.006000513  max resid 0.01455971 
## Run 380 stress 0.07947534 
## ... Procrustes: rmse 0.0001892605  max resid 0.0004621311 
## ... Similar to previous best
## Run 381 stress 0.0794767 
## ... Procrustes: rmse 0.005087308  max resid 0.01226697 
## Run 382 stress 0.07947694 
## ... Procrustes: rmse 0.004862965  max resid 0.01170234 
## Run 383 stress 0.07947634 
## ... Procrustes: rmse 0.005943661  max resid 0.01441698 
## Run 384 stress 0.07947637 
## ... Procrustes: rmse 0.005994707  max resid 0.01454548 
## Run 385 stress 0.07947534 
## ... Procrustes: rmse 0.0001986909  max resid 0.0004842343 
## ... Similar to previous best
## Run 386 stress 0.1916274 
## Run 387 stress 0.07947637 
## ... Procrustes: rmse 0.005993302  max resid 0.01454168 
## Run 388 stress 0.07947641 
## ... Procrustes: rmse 0.005440383  max resid 0.01315272 
## Run 389 stress 0.07947646 
## ... Procrustes: rmse 0.006114143  max resid 0.01484572 
## Run 390 stress 0.0794758 
## ... Procrustes: rmse 0.0006665646  max resid 0.001615519 
## ... Similar to previous best
## Run 391 stress 0.07947645 
## ... Procrustes: rmse 0.006125801  max resid 0.01487445 
## Run 392 stress 0.1916271 
## Run 393 stress 0.07947685 
## ... Procrustes: rmse 0.004956223  max resid 0.01193994 
## Run 394 stress 0.07947637 
## ... Procrustes: rmse 0.005976342  max resid 0.01450219 
## Run 395 stress 0.07947636 
## ... Procrustes: rmse 0.005985523  max resid 0.01452168 
## Run 396 stress 0.07947528 
## ... Procrustes: rmse 2.254746e-05  max resid 5.57011e-05 
## ... Similar to previous best
## Run 397 stress 0.07947643 
## ... Procrustes: rmse 0.006078991  max resid 0.0147528 
## Run 398 stress 0.07947632 
## ... Procrustes: rmse 0.005805278  max resid 0.01406798 
## Run 399 stress 0.07947533 
## ... Procrustes: rmse 0.0001686377  max resid 0.0004116278 
## ... Similar to previous best
## Run 400 stress 0.0794753 
## ... Procrustes: rmse 0.0001160923  max resid 0.0002817183 
## ... Similar to previous best
## Run 401 stress 0.3174252 
## Run 402 stress 0.07947534 
## ... Procrustes: rmse 0.0001452365  max resid 0.0003433964 
## ... Similar to previous best
## Run 403 stress 0.07947638 
## ... Procrustes: rmse 0.005506685  max resid 0.01331954 
## Run 404 stress 0.1966891 
## Run 405 stress 0.07947587 
## ... Procrustes: rmse 0.000715599  max resid 0.001732796 
## ... Similar to previous best
## Run 406 stress 0.0794765 
## ... Procrustes: rmse 0.006175306  max resid 0.01499932 
## Run 407 stress 0.07947646 
## ... Procrustes: rmse 0.006127523  max resid 0.01487944 
## Run 408 stress 0.07947655 
## ... Procrustes: rmse 0.006229993  max resid 0.01513639 
## Run 409 stress 0.07947529 
## ... Procrustes: rmse 4.76145e-05  max resid 0.000114395 
## ... Similar to previous best
## Run 410 stress 0.07947529 
## ... Procrustes: rmse 8.987271e-05  max resid 0.0002189778 
## ... Similar to previous best
## Run 411 stress 0.07947535 
## ... Procrustes: rmse 0.000199349  max resid 0.0004856314 
## ... Similar to previous best
## Run 412 stress 0.07947666 
## ... Procrustes: rmse 0.006317343  max resid 0.0153561 
## Run 413 stress 0.07947649 
## ... Procrustes: rmse 0.00532006  max resid 0.01285091 
## Run 414 stress 0.07947535 
## ... Procrustes: rmse 0.0002012741  max resid 0.0004906771 
## ... Similar to previous best
## Run 415 stress 0.07947602 
## ... Procrustes: rmse 0.0007810703  max resid 0.00189157 
## ... Similar to previous best
## Run 416 stress 0.07947641 
## ... Procrustes: rmse 0.00606215  max resid 0.01471486 
## Run 417 stress 0.07947637 
## ... Procrustes: rmse 0.006007811  max resid 0.01457769 
## Run 418 stress 0.07947872 
## ... Procrustes: rmse 0.002497971  max resid 0.005993225 
## ... Similar to previous best
## Run 419 stress 0.07947531 
## ... Procrustes: rmse 0.0001357327  max resid 0.0003304282 
## ... Similar to previous best
## Run 420 stress 0.07947531 
## ... Procrustes: rmse 0.0001465254  max resid 0.0003570995 
## ... Similar to previous best
## Run 421 stress 0.07947632 
## ... Procrustes: rmse 0.005861434  max resid 0.01421066 
## Run 422 stress 0.07947638 
## ... Procrustes: rmse 0.00602278  max resid 0.01461547 
## Run 423 stress 0.07947637 
## ... Procrustes: rmse 0.006010488  max resid 0.01458513 
## Run 424 stress 0.07947528 
## ... Procrustes: rmse 6.30667e-05  max resid 0.0001538113 
## ... Similar to previous best
## Run 425 stress 0.07947655 
## ... Procrustes: rmse 0.00622141  max resid 0.01511513 
## Run 426 stress 0.07947645 
## ... Procrustes: rmse 0.006121372  max resid 0.01486507 
## Run 427 stress 0.07947639 
## ... Procrustes: rmse 0.006043386  max resid 0.01466713 
## Run 428 stress 0.07947529 
## ... Procrustes: rmse 9.091095e-05  max resid 0.0002216853 
## ... Similar to previous best
## Run 429 stress 0.07947528 
## ... Procrustes: rmse 4.479672e-05  max resid 0.0001056501 
## ... Similar to previous best
## Run 430 stress 0.07947678 
## ... Procrustes: rmse 0.005032696  max resid 0.01212899 
## Run 431 stress 0.07947535 
## ... Procrustes: rmse 0.0002133069  max resid 0.0005203901 
## ... Similar to previous best
## Run 432 stress 0.07947529 
## ... Procrustes: rmse 5.389752e-05  max resid 0.0001261148 
## ... Similar to previous best
## Run 433 stress 0.07947633 
## ... Procrustes: rmse 0.005907486  max resid 0.01432491 
## Run 434 stress 0.07947751 
## ... Procrustes: rmse 0.004421134  max resid 0.01059331 
## Run 435 stress 0.1966881 
## Run 436 stress 0.0794754 
## ... Procrustes: rmse 0.0002433332  max resid 0.0005893356 
## ... Similar to previous best
## Run 437 stress 0.1916273 
## Run 438 stress 0.07947529 
## ... Procrustes: rmse 6.834002e-05  max resid 0.0001672265 
## ... Similar to previous best
## Run 439 stress 0.07947531 
## ... Procrustes: rmse 0.0001528907  max resid 0.0003740178 
## ... Similar to previous best
## Run 440 stress 0.07947645 
## ... Procrustes: rmse 0.00611526  max resid 0.01484904 
## Run 441 stress 0.07947528 
## ... Procrustes: rmse 4.894598e-05  max resid 0.0001194994 
## ... Similar to previous best
## Run 442 stress 0.07947639 
## ... Procrustes: rmse 0.00604439  max resid 0.01466993 
## Run 443 stress 0.07947765 
## ... Procrustes: rmse 0.004315241  max resid 0.01032976 
## Run 444 stress 0.07947649 
## ... Procrustes: rmse 0.005327367  max resid 0.01286942 
## Run 445 stress 0.07947531 
## ... Procrustes: rmse 0.0001443642  max resid 0.0003524559 
## ... Similar to previous best
## Run 446 stress 0.0794753 
## ... Procrustes: rmse 0.0001200165  max resid 0.0002926235 
## ... Similar to previous best
## Run 447 stress 0.07947541 
## ... Procrustes: rmse 0.0003089113  max resid 0.0007498903 
## ... Similar to previous best
## Run 448 stress 0.2899131 
## Run 449 stress 0.07947538 
## ... Procrustes: rmse 0.0002228846  max resid 0.0005402105 
## ... Similar to previous best
## Run 450 stress 0.07947639 
## ... Procrustes: rmse 0.006030667  max resid 0.01463559 
## Run 451 stress 0.0794765 
## ... Procrustes: rmse 0.006172423  max resid 0.01499064 
## Run 452 stress 0.07947538 
## ... Procrustes: rmse 0.0002229119  max resid 0.0005423915 
## ... Similar to previous best
## Run 453 stress 0.07947652 
## ... Procrustes: rmse 0.006176303  max resid 0.01500277 
## Run 454 stress 0.07947642 
## ... Procrustes: rmse 0.006088924  max resid 0.01478194 
## Run 455 stress 0.07947534 
## ... Procrustes: rmse 0.0001856781  max resid 0.000448598 
## ... Similar to previous best
## Run 456 stress 0.07947585 
## ... Procrustes: rmse 0.0006770829  max resid 0.001638844 
## ... Similar to previous best
## Run 457 stress 0.1916271 
## Run 458 stress 0.07947537 
## ... Procrustes: rmse 0.0002371314  max resid 0.0005774834 
## ... Similar to previous best
## Run 459 stress 0.07947642 
## ... Procrustes: rmse 0.00608526  max resid 0.01477269 
## Run 460 stress 0.07947709 
## ... Procrustes: rmse 0.004744368  max resid 0.01140353 
## Run 461 stress 0.07947531 
## ... Procrustes: rmse 0.0001409571  max resid 0.0003431639 
## ... Similar to previous best
## Run 462 stress 0.07947539 
## ... Procrustes: rmse 0.0002620834  max resid 0.0006381466 
## ... Similar to previous best
## Run 463 stress 0.1966884 
## Run 464 stress 0.07947651 
## ... Procrustes: rmse 0.006187626  max resid 0.01502971 
## Run 465 stress 0.07947744 
## ... Procrustes: rmse 0.00447023  max resid 0.0107164 
## Run 466 stress 0.07947532 
## ... Procrustes: rmse 0.0001744396  max resid 0.0004256646 
## ... Similar to previous best
## Run 467 stress 0.3171831 
## Run 468 stress 0.07947638 
## ... Procrustes: rmse 0.006019115  max resid 0.01460641 
## Run 469 stress 0.0794753 
## ... Procrustes: rmse 0.0001065562  max resid 0.0002592253 
## ... Similar to previous best
## Run 470 stress 0.07947805 
## ... Procrustes: rmse 0.004044137  max resid 0.009653186 
## ... Similar to previous best
## Run 471 stress 0.07947643 
## ... Procrustes: rmse 0.006098409  max resid 0.01480536 
## Run 472 stress 0.07947529 
## ... Procrustes: rmse 9.986583e-05  max resid 0.0002452629 
## ... Similar to previous best
## Run 473 stress 0.07947528 
## ... Procrustes: rmse 1.179269e-05  max resid 2.172586e-05 
## ... Similar to previous best
## Run 474 stress 0.0794766 
## ... Procrustes: rmse 0.006274346  max resid 0.01524807 
## Run 475 stress 0.07947641 
## ... Procrustes: rmse 0.006067936  max resid 0.01473047 
## Run 476 stress 0.07947632 
## ... Procrustes: rmse 0.00573402  max resid 0.01388867 
## Run 477 stress 0.07947691 
## ... Procrustes: rmse 0.004892471  max resid 0.01177691 
## Run 478 stress 0.07947896 
## ... Procrustes: rmse 0.003138449  max resid 0.00750506 
## ... Similar to previous best
## Run 479 stress 0.07947531 
## ... Procrustes: rmse 0.0001457117  max resid 0.0003559081 
## ... Similar to previous best
## Run 480 stress 0.07947667 
## ... Procrustes: rmse 0.006324549  max resid 0.01537443 
## Run 481 stress 0.07947638 
## ... Procrustes: rmse 0.006009108  max resid 0.0145795 
## Run 482 stress 0.07947641 
## ... Procrustes: rmse 0.006067786  max resid 0.01472906 
## Run 483 stress 0.0794764 
## ... Procrustes: rmse 0.006045249  max resid 0.0146721 
## Run 484 stress 0.07947657 
## ... Procrustes: rmse 0.006244711  max resid 0.01517322 
## Run 485 stress 0.07947632 
## ... Procrustes: rmse 0.005715599  max resid 0.01384363 
## Run 486 stress 0.1916274 
## Run 487 stress 0.07947533 
## ... Procrustes: rmse 0.0001840384  max resid 0.0004465324 
## ... Similar to previous best
## Run 488 stress 0.07947634 
## ... Procrustes: rmse 0.005927946  max resid 0.01437669 
## Run 489 stress 0.0794765 
## ... Procrustes: rmse 0.006125235  max resid 0.01487432 
## Run 490 stress 0.07947534 
## ... Procrustes: rmse 0.0001975132  max resid 0.000480965 
## ... Similar to previous best
## Run 491 stress 0.07947649 
## ... Procrustes: rmse 0.00615654  max resid 0.01495103 
## Run 492 stress 0.07947529 
## ... Procrustes: rmse 9.063386e-05  max resid 0.000218799 
## ... Similar to previous best
## Run 493 stress 0.07947531 
## ... Procrustes: rmse 0.0001525531  max resid 0.0003720408 
## ... Similar to previous best
## Run 494 stress 0.07947643 
## ... Procrustes: rmse 0.006085534  max resid 0.01477265 
## Run 495 stress 0.07947529 
## ... Procrustes: rmse 7.270939e-05  max resid 0.0001766391 
## ... Similar to previous best
## Run 496 stress 0.07947529 
## ... Procrustes: rmse 9.373565e-05  max resid 0.0002282594 
## ... Similar to previous best
## Run 497 stress 0.07947542 
## ... Procrustes: rmse 0.0003222106  max resid 0.0007821788 
## ... Similar to previous best
## Run 498 stress 0.07947647 
## ... Procrustes: rmse 0.006149275  max resid 0.01493387 
## Run 499 stress 0.07947529 
## ... Procrustes: rmse 8.075678e-05  max resid 0.0001968383 
## ... Similar to previous best
## Run 500 stress 0.1916275 
## *** Best solution repeated 184 times
# Stratified lakes and ocean sites
pdeso_NMDS <- metaMDS(pdeso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 9.841877e-05 
## Run 1 stress 9.952278e-05 
## ... Procrustes: rmse 0.0003100209  max resid 0.0004592501 
## ... Similar to previous best
## Run 2 stress 9.883773e-05 
## ... Procrustes: rmse 0.0004840984  max resid 0.001130581 
## ... Similar to previous best
## Run 3 stress 9.658225e-05 
## ... New best solution
## ... Procrustes: rmse 0.0003407781  max resid 0.0005545689 
## ... Similar to previous best
## Run 4 stress 9.62451e-05 
## ... New best solution
## ... Procrustes: rmse 0.0002386501  max resid 0.0006340264 
## ... Similar to previous best
## Run 5 stress 9.506702e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001813902  max resid 0.0003185648 
## ... Similar to previous best
## Run 6 stress 9.807832e-05 
## ... Procrustes: rmse 1.001523e-05  max resid 2.109195e-05 
## ... Similar to previous best
## Run 7 stress 9.98454e-05 
## ... Procrustes: rmse 0.000127037  max resid 0.0002980753 
## ... Similar to previous best
## Run 8 stress 9.227927e-05 
## ... New best solution
## ... Procrustes: rmse 0.000134831  max resid 0.0002882817 
## ... Similar to previous best
## Run 9 stress 9.896308e-05 
## ... Procrustes: rmse 0.0003564186  max resid 0.0006782592 
## ... Similar to previous best
## Run 10 stress 0.3275196 
## Run 11 stress 9.499081e-05 
## ... Procrustes: rmse 0.0001320705  max resid 0.0002847586 
## ... Similar to previous best
## Run 12 stress 9.462627e-05 
## ... Procrustes: rmse 0.0001886885  max resid 0.0004427109 
## ... Similar to previous best
## Run 13 stress 9.363911e-05 
## ... Procrustes: rmse 0.0002045539  max resid 0.0004525967 
## ... Similar to previous best
## Run 14 stress 9.778537e-05 
## ... Procrustes: rmse 0.0002169553  max resid 0.0003723202 
## ... Similar to previous best
## Run 15 stress 9.819632e-05 
## ... Procrustes: rmse 0.0003371087  max resid 0.0006125078 
## ... Similar to previous best
## Run 16 stress 9.932515e-05 
## ... Procrustes: rmse 0.0002879067  max resid 0.0005062405 
## ... Similar to previous best
## Run 17 stress 9.882799e-05 
## ... Procrustes: rmse 0.0001399301  max resid 0.0002947246 
## ... Similar to previous best
## Run 18 stress 9.964121e-05 
## ... Procrustes: rmse 0.0003298097  max resid 0.0006813054 
## ... Similar to previous best
## Run 19 stress 9.738327e-05 
## ... Procrustes: rmse 0.0003295529  max resid 0.0005860983 
## ... Similar to previous best
## Run 20 stress 0.2693972 
## Run 21 stress 9.609779e-05 
## ... Procrustes: rmse 0.0001208226  max resid 0.0003305467 
## ... Similar to previous best
## Run 22 stress 9.904169e-05 
## ... Procrustes: rmse 0.0003395648  max resid 0.0006163953 
## ... Similar to previous best
## Run 23 stress 9.67023e-05 
## ... Procrustes: rmse 0.0001198794  max resid 0.0002846052 
## ... Similar to previous best
## Run 24 stress 9.768804e-05 
## ... Procrustes: rmse 0.0003353028  max resid 0.0006091379 
## ... Similar to previous best
## Run 25 stress 9.428031e-05 
## ... Procrustes: rmse 0.0001338181  max resid 0.0002876763 
## ... Similar to previous best
## Run 26 stress 9.993375e-05 
## ... Procrustes: rmse 0.0002552055  max resid 0.0004615783 
## ... Similar to previous best
## Run 27 stress 9.98311e-05 
## ... Procrustes: rmse 0.0002567683  max resid 0.0005013541 
## ... Similar to previous best
## Run 28 stress 9.892056e-05 
## ... Procrustes: rmse 0.0002874701  max resid 0.0004706755 
## ... Similar to previous best
## Run 29 stress 9.423854e-05 
## ... Procrustes: rmse 0.0001958548  max resid 0.0003966364 
## ... Similar to previous best
## Run 30 stress 9.747487e-05 
## ... Procrustes: rmse 0.0002840188  max resid 0.0004240471 
## ... Similar to previous best
## Run 31 stress 9.859965e-05 
## ... Procrustes: rmse 0.0003082754  max resid 0.0006562274 
## ... Similar to previous best
## Run 32 stress 9.275789e-05 
## ... Procrustes: rmse 0.0001943818  max resid 0.000306393 
## ... Similar to previous best
## Run 33 stress 9.540856e-05 
## ... Procrustes: rmse 0.0003004714  max resid 0.0006397999 
## ... Similar to previous best
## Run 34 stress 9.88192e-05 
## ... Procrustes: rmse 0.0001809935  max resid 0.0003391258 
## ... Similar to previous best
## Run 35 stress 9.509373e-05 
## ... Procrustes: rmse 0.000133926  max resid 0.0002880054 
## ... Similar to previous best
## Run 36 stress 9.645388e-05 
## ... Procrustes: rmse 0.0001971215  max resid 0.0004045435 
## ... Similar to previous best
## Run 37 stress 9.502506e-05 
## ... Procrustes: rmse 0.0001685068  max resid 0.0003805872 
## ... Similar to previous best
## Run 38 stress 9.308348e-05 
## ... Procrustes: rmse 0.0002918726  max resid 0.0006249771 
## ... Similar to previous best
## Run 39 stress 7.393023e-05 
## ... New best solution
## ... Procrustes: rmse 0.0001689793  max resid 0.0003787732 
## ... Similar to previous best
## Run 40 stress 9.648534e-05 
## ... Procrustes: rmse 0.0003298258  max resid 0.0005471845 
## ... Similar to previous best
## Run 41 stress 9.727932e-05 
## ... Procrustes: rmse 0.0001800687  max resid 0.0003154765 
## ... Similar to previous best
## Run 42 stress 9.695273e-05 
## ... Procrustes: rmse 0.0001782652  max resid 0.0003187433 
## ... Similar to previous best
## Run 43 stress 9.867894e-05 
## ... Procrustes: rmse 0.000346137  max resid 0.0006107768 
## ... Similar to previous best
## Run 44 stress 9.493727e-05 
## ... Procrustes: rmse 0.0001224528  max resid 0.0002982462 
## ... Similar to previous best
## Run 45 stress 9.997134e-05 
## ... Procrustes: rmse 0.0002508948  max resid 0.0004985898 
## ... Similar to previous best
## Run 46 stress 9.732898e-05 
## ... Procrustes: rmse 0.0003197431  max resid 0.0005928609 
## ... Similar to previous best
## Run 47 stress 9.946821e-05 
## ... Procrustes: rmse 0.0003383515  max resid 0.0005983349 
## ... Similar to previous best
## Run 48 stress 9.767432e-05 
## ... Procrustes: rmse 0.0002916955  max resid 0.0006083547 
## ... Similar to previous best
## Run 49 stress 9.697486e-05 
## ... Procrustes: rmse 0.0002227337  max resid 0.0004065158 
## ... Similar to previous best
## Run 50 stress 9.350447e-05 
## ... Procrustes: rmse 0.0002031477  max resid 0.0003451213 
## ... Similar to previous best
## Run 51 stress 9.794023e-05 
## ... Procrustes: rmse 0.0002454516  max resid 0.0004909589 
## ... Similar to previous best
## Run 52 stress 9.856086e-05 
## ... Procrustes: rmse 0.0001788565  max resid 0.0003927678 
## ... Similar to previous best
## Run 53 stress 9.862603e-05 
## ... Procrustes: rmse 0.000182094  max resid 0.0003155612 
## ... Similar to previous best
## Run 54 stress 9.985794e-05 
## ... Procrustes: rmse 0.0002969385  max resid 0.0004490526 
## ... Similar to previous best
## Run 55 stress 0.2520003 
## Run 56 stress 9.429355e-05 
## ... Procrustes: rmse 0.0003274962  max resid 0.0006197181 
## ... Similar to previous best
## Run 57 stress 9.684308e-05 
## ... Procrustes: rmse 0.0003066299  max resid 0.0005942055 
## ... Similar to previous best
## Run 58 stress 9.82393e-05 
## ... Procrustes: rmse 0.000247974  max resid 0.0004943316 
## ... Similar to previous best
## Run 59 stress 9.904462e-05 
## ... Procrustes: rmse 0.0003139755  max resid 0.0006190313 
## ... Similar to previous best
## Run 60 stress 9.818607e-05 
## ... Procrustes: rmse 0.0003110811  max resid 0.0006067776 
## ... Similar to previous best
## Run 61 stress 9.884847e-05 
## ... Procrustes: rmse 0.0001740619  max resid 0.0003853338 
## ... Similar to previous best
## Run 62 stress 9.710921e-05 
## ... Procrustes: rmse 0.0002388431  max resid 0.0004836797 
## ... Similar to previous best
## Run 63 stress 8.292996e-05 
## ... Procrustes: rmse 0.0001492417  max resid 0.0003468076 
## ... Similar to previous best
## Run 64 stress 9.863039e-05 
## ... Procrustes: rmse 0.0003253188  max resid 0.0004942105 
## ... Similar to previous best
## Run 65 stress 9.76319e-05 
## ... Procrustes: rmse 0.0003069422  max resid 0.0006220446 
## ... Similar to previous best
## Run 66 stress 9.651012e-05 
## ... Procrustes: rmse 0.000190924  max resid 0.0003558999 
## ... Similar to previous best
## Run 67 stress 9.882365e-05 
## ... Procrustes: rmse 0.0003264289  max resid 0.0004942074 
## ... Similar to previous best
## Run 68 stress 9.557032e-05 
## ... Procrustes: rmse 0.0002191034  max resid 0.0003620392 
## ... Similar to previous best
## Run 69 stress 7.913553e-05 
## ... Procrustes: rmse 0.0001277024  max resid 0.0002990235 
## ... Similar to previous best
## Run 70 stress 9.794229e-05 
## ... Procrustes: rmse 0.0001891731  max resid 0.0003391618 
## ... Similar to previous best
## Run 71 stress 9.750029e-05 
## ... Procrustes: rmse 0.0002164811  max resid 0.0004012227 
## ... Similar to previous best
## Run 72 stress 9.787938e-05 
## ... Procrustes: rmse 0.0002962545  max resid 0.0006113439 
## ... Similar to previous best
## Run 73 stress 9.899137e-05 
## ... Procrustes: rmse 0.0002971139  max resid 0.000614067 
## ... Similar to previous best
## Run 74 stress 8.976376e-05 
## ... Procrustes: rmse 0.000170602  max resid 0.0003454537 
## ... Similar to previous best
## Run 75 stress 8.627087e-05 
## ... Procrustes: rmse 0.0001591522  max resid 0.0002880488 
## ... Similar to previous best
## Run 76 stress 9.481555e-05 
## ... Procrustes: rmse 0.0002195314  max resid 0.0003632253 
## ... Similar to previous best
## Run 77 stress 9.153604e-05 
## ... Procrustes: rmse 0.000303777  max resid 0.0005899523 
## ... Similar to previous best
## Run 78 stress 9.91274e-05 
## ... Procrustes: rmse 0.0002493661  max resid 0.000442075 
## ... Similar to previous best
## Run 79 stress 9.99829e-05 
## ... Procrustes: rmse 0.0002337748  max resid 0.0003825657 
## ... Similar to previous best
## Run 80 stress 9.949214e-05 
## ... Procrustes: rmse 0.0001802374  max resid 0.0003564473 
## ... Similar to previous best
## Run 81 stress 9.707194e-05 
## ... Procrustes: rmse 0.0001961933  max resid 0.0002923167 
## ... Similar to previous best
## Run 82 stress 9.861979e-05 
## ... Procrustes: rmse 0.0003031586  max resid 0.0006242726 
## ... Similar to previous best
## Run 83 stress 7.741513e-05 
## ... Procrustes: rmse 9.056005e-05  max resid 0.0002162475 
## ... Similar to previous best
## Run 84 stress 9.767919e-05 
## ... Procrustes: rmse 0.0002559906  max resid 0.0004888481 
## ... Similar to previous best
## Run 85 stress 9.670556e-05 
## ... Procrustes: rmse 0.0002161346  max resid 0.0003599981 
## ... Similar to previous best
## Run 86 stress 8.965377e-05 
## ... Procrustes: rmse 0.0002121683  max resid 0.0003350655 
## ... Similar to previous best
## Run 87 stress 9.927443e-05 
## ... Procrustes: rmse 0.0003273878  max resid 0.0005001326 
## ... Similar to previous best
## Run 88 stress 9.90688e-05 
## ... Procrustes: rmse 0.0003217002  max resid 0.0006428284 
## ... Similar to previous best
## Run 89 stress 9.442997e-05 
## ... Procrustes: rmse 0.0001605508  max resid 0.0003647688 
## ... Similar to previous best
## Run 90 stress 9.690094e-05 
## ... Procrustes: rmse 0.0003295161  max resid 0.0006057214 
## ... Similar to previous best
## Run 91 stress 9.858384e-05 
## ... Procrustes: rmse 0.0001822997  max resid 0.0003184947 
## ... Similar to previous best
## Run 92 stress 9.945798e-05 
## ... Procrustes: rmse 0.0001981148  max resid 0.0003385742 
## ... Similar to previous best
## Run 93 stress 9.366036e-05 
## ... Procrustes: rmse 0.0001800555  max resid 0.0003398224 
## ... Similar to previous best
## Run 94 stress 9.820416e-05 
## ... Procrustes: rmse 0.0002366902  max resid 0.000357433 
## ... Similar to previous best
## Run 95 stress 9.797941e-05 
## ... Procrustes: rmse 0.0003238004  max resid 0.0004916469 
## ... Similar to previous best
## Run 96 stress 9.783986e-05 
## ... Procrustes: rmse 0.0001808814  max resid 0.0003178332 
## ... Similar to previous best
## Run 97 stress 9.672335e-05 
## ... Procrustes: rmse 0.0001783147  max resid 0.0003201679 
## ... Similar to previous best
## Run 98 stress 8.619542e-05 
## ... Procrustes: rmse 0.0001588134  max resid 0.0002868908 
## ... Similar to previous best
## Run 99 stress 9.857266e-05 
## ... Procrustes: rmse 0.0002491994  max resid 0.0004960985 
## ... Similar to previous best
## Run 100 stress 9.285954e-05 
## ... Procrustes: rmse 0.0001784808  max resid 0.0003372155 
## ... Similar to previous best
## Run 101 stress 0.2693981 
## Run 102 stress 9.918599e-05 
## ... Procrustes: rmse 0.0003173623  max resid 0.0006181359 
## ... Similar to previous best
## Run 103 stress 9.687981e-05 
## ... Procrustes: rmse 0.0003287873  max resid 0.0006060029 
## ... Similar to previous best
## Run 104 stress 9.631085e-05 
## ... Procrustes: rmse 0.0003296769  max resid 0.0006118868 
## ... Similar to previous best
## Run 105 stress 9.662143e-05 
## ... Procrustes: rmse 0.0001360707  max resid 0.0002354444 
## ... Similar to previous best
## Run 106 stress 9.238155e-05 
## ... Procrustes: rmse 0.0001841852  max resid 0.0004336456 
## ... Similar to previous best
## Run 107 stress 9.892129e-05 
## ... Procrustes: rmse 0.0002355883  max resid 0.0003552934 
## ... Similar to previous best
## Run 108 stress 9.96877e-05 
## ... Procrustes: rmse 0.0003427467  max resid 0.0006434789 
## ... Similar to previous best
## Run 109 stress 0.2694895 
## Run 110 stress 9.82631e-05 
## ... Procrustes: rmse 0.000283649  max resid 0.0006010232 
## ... Similar to previous best
## Run 111 stress 9.857581e-05 
## ... Procrustes: rmse 0.0002791953  max resid 0.0005004598 
## ... Similar to previous best
## Run 112 stress 8.90138e-05 
## ... Procrustes: rmse 0.0001567653  max resid 0.0002826582 
## ... Similar to previous best
## Run 113 stress 9.888441e-05 
## ... Procrustes: rmse 0.0001924534  max resid 0.0003457151 
## ... Similar to previous best
## Run 114 stress 9.773596e-05 
## ... Procrustes: rmse 0.0002480907  max resid 0.0004414285 
## ... Similar to previous best
## Run 115 stress 9.783022e-05 
## ... Procrustes: rmse 0.0001425594  max resid 0.0002372759 
## ... Similar to previous best
## Run 116 stress 9.656761e-05 
## ... Procrustes: rmse 0.000225684  max resid 0.0004072014 
## ... Similar to previous best
## Run 117 stress 0.3192024 
## Run 118 stress 9.923712e-05 
## ... Procrustes: rmse 0.0002809638  max resid 0.0004882085 
## ... Similar to previous best
## Run 119 stress 9.907121e-05 
## ... Procrustes: rmse 0.000304171  max resid 0.0005998444 
## ... Similar to previous best
## Run 120 stress 8.611182e-05 
## ... Procrustes: rmse 0.0001629218  max resid 0.0004009404 
## ... Similar to previous best
## Run 121 stress 9.789276e-05 
## ... Procrustes: rmse 0.0002758565  max resid 0.000468953 
## ... Similar to previous best
## Run 122 stress 9.881198e-05 
## ... Procrustes: rmse 0.0001972833  max resid 0.0002926123 
## ... Similar to previous best
## Run 123 stress 9.727474e-05 
## ... Procrustes: rmse 0.0001915851  max resid 0.0003306425 
## ... Similar to previous best
## Run 124 stress 9.874357e-05 
## ... Procrustes: rmse 0.0002936661  max resid 0.0006084069 
## ... Similar to previous best
## Run 125 stress 9.823174e-05 
## ... Procrustes: rmse 0.0002447127  max resid 0.0004379599 
## ... Similar to previous best
## Run 126 stress 9.87865e-05 
## ... Procrustes: rmse 0.0003181945  max resid 0.0004809266 
## ... Similar to previous best
## Run 127 stress 9.871719e-05 
## ... Procrustes: rmse 0.0001301978  max resid 0.0003483054 
## ... Similar to previous best
## Run 128 stress 9.407203e-05 
## ... Procrustes: rmse 0.000226537  max resid 0.0003474162 
## ... Similar to previous best
## Run 129 stress 9.784841e-05 
## ... Procrustes: rmse 0.0002477212  max resid 0.0004402969 
## ... Similar to previous best
## Run 130 stress 9.864093e-05 
## ... Procrustes: rmse 0.0001816434  max resid 0.0003105469 
## ... Similar to previous best
## Run 131 stress 9.905026e-05 
## ... Procrustes: rmse 0.0003408648  max resid 0.0006484338 
## ... Similar to previous best
## Run 132 stress 9.279755e-05 
## ... Procrustes: rmse 0.000203847  max resid 0.0003113093 
## ... Similar to previous best
## Run 133 stress 8.353456e-05 
## ... Procrustes: rmse 0.0001970253  max resid 0.0003347273 
## ... Similar to previous best
## Run 134 stress 9.309457e-05 
## ... Procrustes: rmse 0.0001477208  max resid 0.000310306 
## ... Similar to previous best
## Run 135 stress 9.851283e-05 
## ... Procrustes: rmse 0.0003151274  max resid 0.0006175841 
## ... Similar to previous best
## Run 136 stress 0.2447068 
## Run 137 stress 9.956164e-05 
## ... Procrustes: rmse 0.0003138458  max resid 0.0005611093 
## ... Similar to previous best
## Run 138 stress 9.930764e-05 
## ... Procrustes: rmse 0.000300779  max resid 0.0006186016 
## ... Similar to previous best
## Run 139 stress 9.669727e-05 
## ... Procrustes: rmse 0.0001789575  max resid 0.0003144849 
## ... Similar to previous best
## Run 140 stress 9.47972e-05 
## ... Procrustes: rmse 0.0002196698  max resid 0.0003631486 
## ... Similar to previous best
## Run 141 stress 9.724061e-05 
## ... Procrustes: rmse 0.0002149965  max resid 0.0003568391 
## ... Similar to previous best
## Run 142 stress 9.987191e-05 
## ... Procrustes: rmse 0.0002530175  max resid 0.0005006451 
## ... Similar to previous best
## Run 143 stress 9.441864e-05 
## ... Procrustes: rmse 0.0001229197  max resid 0.0003001835 
## ... Similar to previous best
## Run 144 stress 9.748949e-05 
## ... Procrustes: rmse 0.00028978  max resid 0.0006029811 
## ... Similar to previous best
## Run 145 stress 9.916644e-05 
## ... Procrustes: rmse 0.0003195371  max resid 0.0006496381 
## ... Similar to previous best
## Run 146 stress 9.434759e-05 
## ... Procrustes: rmse 0.0001718349  max resid 0.0003827401 
## ... Similar to previous best
## Run 147 stress 9.897118e-05 
## ... Procrustes: rmse 0.0003290758  max resid 0.0005022929 
## ... Similar to previous best
## Run 148 stress 9.838305e-05 
## ... Procrustes: rmse 0.0003406524  max resid 0.0006389992 
## ... Similar to previous best
## Run 149 stress 9.600321e-05 
## ... Procrustes: rmse 0.000237457  max resid 0.0004807694 
## ... Similar to previous best
## Run 150 stress 9.880447e-05 
## ... Procrustes: rmse 0.0001912825  max resid 0.0003662146 
## ... Similar to previous best
## Run 151 stress 9.97739e-05 
## ... Procrustes: rmse 0.0003422753  max resid 0.0005666857 
## ... Similar to previous best
## Run 152 stress 9.498572e-05 
## ... Procrustes: rmse 0.0001690632  max resid 0.0003099 
## ... Similar to previous best
## Run 153 stress 9.227027e-05 
## ... Procrustes: rmse 0.0003037544  max resid 0.0004600242 
## ... Similar to previous best
## Run 154 stress 8.963464e-05 
## ... Procrustes: rmse 0.0001707944  max resid 0.0003110015 
## ... Similar to previous best
## Run 155 stress 9.92336e-05 
## ... Procrustes: rmse 0.0003291139  max resid 0.0005001941 
## ... Similar to previous best
## Run 156 stress 9.572366e-05 
## ... Procrustes: rmse 0.0002296688  max resid 0.0003477788 
## ... Similar to previous best
## Run 157 stress 0.2520002 
## Run 158 stress 9.977476e-05 
## ... Procrustes: rmse 0.0003408663  max resid 0.0005623714 
## ... Similar to previous best
## Run 159 stress 8.828007e-05 
## ... Procrustes: rmse 0.0002117514  max resid 0.0004465379 
## ... Similar to previous best
## Run 160 stress 9.833225e-05 
## ... Procrustes: rmse 0.0001815025  max resid 0.0003190122 
## ... Similar to previous best
## Run 161 stress 9.758197e-05 
## ... Procrustes: rmse 0.0001791529  max resid 0.0003133705 
## ... Similar to previous best
## Run 162 stress 9.684435e-05 
## ... Procrustes: rmse 0.0001410587  max resid 0.0002337492 
## ... Similar to previous best
## Run 163 stress 9.381482e-05 
## ... Procrustes: rmse 0.0002361097  max resid 0.0004795088 
## ... Similar to previous best
## Run 164 stress 8.810325e-05 
## ... Procrustes: rmse 0.0002464521  max resid 0.0005070525 
## ... Similar to previous best
## Run 165 stress 9.857976e-05 
## ... Procrustes: rmse 0.0003433429  max resid 0.0006042464 
## ... Similar to previous best
## Run 166 stress 9.960072e-05 
## ... Procrustes: rmse 0.0003399555  max resid 0.0005592443 
## ... Similar to previous best
## Run 167 stress 9.974914e-05 
## ... Procrustes: rmse 0.0003324023  max resid 0.0006732624 
## ... Similar to previous best
## Run 168 stress 9.113287e-05 
## ... Procrustes: rmse 0.0001680049  max resid 0.0002998828 
## ... Similar to previous best
## Run 169 stress 9.320622e-05 
## ... Procrustes: rmse 0.0001788985  max resid 0.0003234977 
## ... Similar to previous best
## Run 170 stress 0.2581126 
## Run 171 stress 9.543219e-05 
## ... Procrustes: rmse 0.0002268081  max resid 0.0004692973 
## ... Similar to previous best
## Run 172 stress 9.695158e-05 
## ... Procrustes: rmse 0.000207436  max resid 0.000400043 
## ... Similar to previous best
## Run 173 stress 9.492874e-05 
## ... Procrustes: rmse 0.0002843659  max resid 0.0005912166 
## ... Similar to previous best
## Run 174 stress 9.528204e-05 
## ... Procrustes: rmse 0.0002397142  max resid 0.0004840484 
## ... Similar to previous best
## Run 175 stress 9.764875e-05 
## ... Procrustes: rmse 0.000290931  max resid 0.0006115474 
## ... Similar to previous best
## Run 176 stress 9.726462e-05 
## ... Procrustes: rmse 0.0001882783  max resid 0.00033721 
## ... Similar to previous best
## Run 177 stress 9.718826e-05 
## ... Procrustes: rmse 0.0001795089  max resid 0.000314753 
## ... Similar to previous best
## Run 178 stress 9.970094e-05 
## ... Procrustes: rmse 0.0001792274  max resid 0.0003223714 
## ... Similar to previous best
## Run 179 stress 0.2520002 
## Run 180 stress 8.552464e-05 
## ... Procrustes: rmse 0.000172397  max resid 0.0002869987 
## ... Similar to previous best
## Run 181 stress 9.900868e-05 
## ... Procrustes: rmse 0.0002948914  max resid 0.0006050924 
## ... Similar to previous best
## Run 182 stress 9.855021e-05 
## ... Procrustes: rmse 0.0001818306  max resid 0.0003002358 
## ... Similar to previous best
## Run 183 stress 9.871139e-05 
## ... Procrustes: rmse 0.0001903367  max resid 0.0003541002 
## ... Similar to previous best
## Run 184 stress 9.747343e-05 
## ... Procrustes: rmse 0.0003099819  max resid 0.0006055316 
## ... Similar to previous best
## Run 185 stress 9.928102e-05 
## ... Procrustes: rmse 0.0003405422  max resid 0.0005980702 
## ... Similar to previous best
## Run 186 stress 9.734727e-05 
## ... Procrustes: rmse 0.0001538345  max resid 0.0003218977 
## ... Similar to previous best
## Run 187 stress 9.904583e-05 
## ... Procrustes: rmse 0.0001911763  max resid 0.0003422779 
## ... Similar to previous best
## Run 188 stress 9.972277e-05 
## ... Procrustes: rmse 0.0003277142  max resid 0.0005939831 
## ... Similar to previous best
## Run 189 stress 9.596403e-05 
## ... Procrustes: rmse 0.0001759196  max resid 0.0003105817 
## ... Similar to previous best
## Run 190 stress 9.472086e-05 
## ... Procrustes: rmse 0.0002694141  max resid 0.0004654728 
## ... Similar to previous best
## Run 191 stress 9.782344e-05 
## ... Procrustes: rmse 0.0002439833  max resid 0.0004356586 
## ... Similar to previous best
## Run 192 stress 0.2624778 
## Run 193 stress 9.774888e-05 
## ... Procrustes: rmse 0.0002883435  max resid 0.0005858208 
## ... Similar to previous best
## Run 194 stress 9.946425e-05 
## ... Procrustes: rmse 0.0003188811  max resid 0.0006573119 
## ... Similar to previous best
## Run 195 stress 9.99658e-05 
## ... Procrustes: rmse 0.0003249518  max resid 0.0006500414 
## ... Similar to previous best
## Run 196 stress 9.749439e-05 
## ... Procrustes: rmse 0.000226764  max resid 0.0003728747 
## ... Similar to previous best
## Run 197 stress 9.145414e-05 
## ... Procrustes: rmse 0.0001661189  max resid 0.0002875102 
## ... Similar to previous best
## Run 198 stress 9.783598e-05 
## ... Procrustes: rmse 0.000341185  max resid 0.0006009701 
## ... Similar to previous best
## Run 199 stress 9.96031e-05 
## ... Procrustes: rmse 0.0002516784  max resid 0.0004988581 
## ... Similar to previous best
## Run 200 stress 9.196296e-05 
## ... Procrustes: rmse 0.0002267776  max resid 0.0004683383 
## ... Similar to previous best
## Run 201 stress 9.845751e-05 
## ... Procrustes: rmse 0.0001909266  max resid 0.0003410286 
## ... Similar to previous best
## Run 202 stress 9.098764e-05 
## ... Procrustes: rmse 2.787832e-05  max resid 4.070849e-05 
## ... Similar to previous best
## Run 203 stress 9.690656e-05 
## ... Procrustes: rmse 0.0002312204  max resid 0.0003489157 
## ... Similar to previous best
## Run 204 stress 9.497038e-05 
## ... Procrustes: rmse 0.0003130914  max resid 0.0004825173 
## ... Similar to previous best
## Run 205 stress 9.883784e-05 
## ... Procrustes: rmse 0.0003281647  max resid 0.0004992412 
## ... Similar to previous best
## Run 206 stress 9.226279e-05 
## ... Procrustes: rmse 0.0001170006  max resid 0.0002870895 
## ... Similar to previous best
## Run 207 stress 9.943316e-05 
## ... Procrustes: rmse 0.0001922814  max resid 0.0003583559 
## ... Similar to previous best
## Run 208 stress 9.934719e-05 
## ... Procrustes: rmse 0.0001973045  max resid 0.0002954176 
## ... Similar to previous best
## Run 209 stress 8.775518e-05 
## ... Procrustes: rmse 4.194735e-05  max resid 8.272518e-05 
## ... Similar to previous best
## Run 210 stress 9.513778e-05 
## ... Procrustes: rmse 0.0003066925  max resid 0.0005486508 
## ... Similar to previous best
## Run 211 stress 9.955612e-05 
## ... Procrustes: rmse 0.000258086  max resid 0.0005011564 
## ... Similar to previous best
## Run 212 stress 9.864565e-05 
## ... Procrustes: rmse 0.0003424181  max resid 0.0006375009 
## ... Similar to previous best
## Run 213 stress 9.881786e-05 
## ... Procrustes: rmse 0.0001792941  max resid 0.0003223376 
## ... Similar to previous best
## Run 214 stress 0.3407342 
## Run 215 stress 9.868297e-05 
## ... Procrustes: rmse 0.0003408065  max resid 0.0006455894 
## ... Similar to previous best
## Run 216 stress 9.298857e-05 
## ... Procrustes: rmse 0.0001453632  max resid 0.0002961653 
## ... Similar to previous best
## Run 217 stress 9.677986e-05 
## ... Procrustes: rmse 0.0002912431  max resid 0.0006012676 
## ... Similar to previous best
## Run 218 stress 9.575311e-05 
## ... Procrustes: rmse 0.0001531189  max resid 0.0003402039 
## ... Similar to previous best
## Run 219 stress 9.873373e-05 
## ... Procrustes: rmse 0.0001783569  max resid 0.0003919165 
## ... Similar to previous best
## Run 220 stress 9.719179e-05 
## ... Procrustes: rmse 0.000126513  max resid 0.0003014609 
## ... Similar to previous best
## Run 221 stress 9.966536e-05 
## ... Procrustes: rmse 0.0002387412  max resid 0.0004852761 
## ... Similar to previous best
## Run 222 stress 9.922739e-05 
## ... Procrustes: rmse 0.0002618535  max resid 0.0004084569 
## ... Similar to previous best
## Run 223 stress 9.714825e-05 
## ... Procrustes: rmse 0.0001830148  max resid 0.0003499651 
## ... Similar to previous best
## Run 224 stress 9.680395e-05 
## ... Procrustes: rmse 0.0003299878  max resid 0.0006073969 
## ... Similar to previous best
## Run 225 stress 9.855834e-05 
## ... Procrustes: rmse 0.0003374289  max resid 0.0005567205 
## ... Similar to previous best
## Run 226 stress 9.910716e-05 
## ... Procrustes: rmse 0.0001450853  max resid 0.000241474 
## ... Similar to previous best
## Run 227 stress 9.819002e-05 
## ... Procrustes: rmse 0.0003174102  max resid 0.0006342245 
## ... Similar to previous best
## Run 228 stress 9.838315e-05 
## ... Procrustes: rmse 0.0001650565  max resid 0.0003220254 
## ... Similar to previous best
## Run 229 stress 0.2454662 
## Run 230 stress 9.41286e-05 
## ... Procrustes: rmse 0.0001829394  max resid 0.0003169666 
## ... Similar to previous best
## Run 231 stress 9.940703e-05 
## ... Procrustes: rmse 0.0001457453  max resid 0.0002395431 
## ... Similar to previous best
## Run 232 stress 9.619118e-05 
## ... Procrustes: rmse 0.0002352084  max resid 0.000425717 
## ... Similar to previous best
## Run 233 stress 9.777678e-05 
## ... Procrustes: rmse 0.0003215632  max resid 0.0004868729 
## ... Similar to previous best
## Run 234 stress 8.970844e-05 
## ... Procrustes: rmse 0.0001147608  max resid 0.000213847 
## ... Similar to previous best
## Run 235 stress 9.917077e-05 
## ... Procrustes: rmse 0.0003235447  max resid 0.00064789 
## ... Similar to previous best
## Run 236 stress 0.3407342 
## Run 237 stress 9.774062e-05 
## ... Procrustes: rmse 0.0002487041  max resid 0.0004416454 
## ... Similar to previous best
## Run 238 stress 9.829776e-05 
## ... Procrustes: rmse 0.000276921  max resid 0.0004583146 
## ... Similar to previous best
## Run 239 stress 9.709257e-05 
## ... Procrustes: rmse 0.0003092443  max resid 0.0006031464 
## ... Similar to previous best
## Run 240 stress 9.834554e-05 
## ... Procrustes: rmse 0.0003086158  max resid 0.0006081793 
## ... Similar to previous best
## Run 241 stress 9.902295e-05 
## ... Procrustes: rmse 0.0001874431  max resid 0.0003345411 
## ... Similar to previous best
## Run 242 stress 9.713925e-05 
## ... Procrustes: rmse 0.0001306581  max resid 0.0003517624 
## ... Similar to previous best
## Run 243 stress 9.634508e-05 
## ... Procrustes: rmse 0.0002439569  max resid 0.0004363345 
## ... Similar to previous best
## Run 244 stress 9.395006e-05 
## ... Procrustes: rmse 0.0001739128  max resid 0.0003084155 
## ... Similar to previous best
## Run 245 stress 9.616801e-05 
## ... Procrustes: rmse 0.0001768868  max resid 0.0003112725 
## ... Similar to previous best
## Run 246 stress 9.281969e-05 
## ... Procrustes: rmse 0.0002196087  max resid 0.0003369857 
## ... Similar to previous best
## Run 247 stress 0.2681919 
## Run 248 stress 9.971437e-05 
## ... Procrustes: rmse 0.0003407902  max resid 0.0005625606 
## ... Similar to previous best
## Run 249 stress 9.984687e-05 
## ... Procrustes: rmse 0.0001854627  max resid 0.000322684 
## ... Similar to previous best
## Run 250 stress 9.165661e-05 
## ... Procrustes: rmse 0.0001291457  max resid 0.000227062 
## ... Similar to previous best
## Run 251 stress 9.886795e-05 
## ... Procrustes: rmse 0.0002248529  max resid 0.0003708543 
## ... Similar to previous best
## Run 252 stress 0.3407339 
## Run 253 stress 9.770842e-05 
## ... Procrustes: rmse 0.0002523167  max resid 0.0003961022 
## ... Similar to previous best
## Run 254 stress 9.766432e-05 
## ... Procrustes: rmse 0.0002273025  max resid 0.0003729054 
## ... Similar to previous best
## Run 255 stress 9.794697e-05 
## ... Procrustes: rmse 0.000188666  max resid 0.0003529788 
## ... Similar to previous best
## Run 256 stress 8.809977e-05 
## ... Procrustes: rmse 0.0001442017  max resid 0.0003253516 
## ... Similar to previous best
## Run 257 stress 9.931087e-05 
## ... Procrustes: rmse 0.0002501744  max resid 0.0004976852 
## ... Similar to previous best
## Run 258 stress 9.957228e-05 
## ... Procrustes: rmse 0.0001772778  max resid 0.0003900401 
## ... Similar to previous best
## Run 259 stress 9.797658e-05 
## ... Procrustes: rmse 0.0003401047  max resid 0.000635057 
## ... Similar to previous best
## Run 260 stress 9.523332e-05 
## ... Procrustes: rmse 0.0003232053  max resid 0.0005372967 
## ... Similar to previous best
## Run 261 stress 9.558371e-05 
## ... Procrustes: rmse 0.0001379294  max resid 0.0002324978 
## ... Similar to previous best
## Run 262 stress 9.612755e-05 
## ... Procrustes: rmse 0.0002851752  max resid 0.0005807863 
## ... Similar to previous best
## Run 263 stress 9.680452e-05 
## ... Procrustes: rmse 0.0001759211  max resid 0.0003029536 
## ... Similar to previous best
## Run 264 stress 7.040399e-05 
## ... New best solution
## ... Procrustes: rmse 1.362379e-05  max resid 2.367606e-05 
## ... Similar to previous best
## Run 265 stress 9.209469e-05 
## ... Procrustes: rmse 0.0002956033  max resid 0.0005505583 
## ... Similar to previous best
## Run 266 stress 9.67059e-05 
## ... Procrustes: rmse 0.0002501128  max resid 0.0004329506 
## ... Similar to previous best
## Run 267 stress 9.806223e-05 
## ... Procrustes: rmse 0.0003270651  max resid 0.0004963397 
## ... Similar to previous best
## Run 268 stress 9.232938e-05 
## ... Procrustes: rmse 0.0001684342  max resid 0.0003002381 
## ... Similar to previous best
## Run 269 stress 9.830269e-05 
## ... Procrustes: rmse 0.0001801186  max resid 0.0003165509 
## ... Similar to previous best
## Run 270 stress 9.760899e-05 
## ... Procrustes: rmse 0.000185203  max resid 0.0003363695 
## ... Similar to previous best
## Run 271 stress 9.549527e-05 
## ... Procrustes: rmse 0.0002839699  max resid 0.000601504 
## ... Similar to previous best
## Run 272 stress 9.681634e-05 
## ... Procrustes: rmse 0.0001766851  max resid 0.0003143237 
## ... Similar to previous best
## Run 273 stress 9.833394e-05 
## ... Procrustes: rmse 0.0001802509  max resid 0.0003177574 
## ... Similar to previous best
## Run 274 stress 9.810589e-05 
## ... Procrustes: rmse 0.0003343118  max resid 0.0005518175 
## ... Similar to previous best
## Run 275 stress 9.928935e-05 
## ... Procrustes: rmse 0.0003355167  max resid 0.0005115495 
## ... Similar to previous best
## Run 276 stress 9.866648e-05 
## ... Procrustes: rmse 0.0002950449  max resid 0.0006049577 
## ... Similar to previous best
## Run 277 stress 9.71259e-05 
## ... Procrustes: rmse 0.0002480728  max resid 0.0004884033 
## ... Similar to previous best
## Run 278 stress 9.520372e-05 
## ... Procrustes: rmse 0.0001886949  max resid 0.00029166 
## ... Similar to previous best
## Run 279 stress 9.923785e-05 
## ... Procrustes: rmse 0.0003414771  max resid 0.0006322354 
## ... Similar to previous best
## Run 280 stress 9.785658e-05 
## ... Procrustes: rmse 0.0001950612  max resid 0.0003325418 
## ... Similar to previous best
## Run 281 stress 9.75352e-05 
## ... Procrustes: rmse 0.0002482807  max resid 0.0004897796 
## ... Similar to previous best
## Run 282 stress 9.908067e-05 
## ... Procrustes: rmse 0.0003196501  max resid 0.0006405062 
## ... Similar to previous best
## Run 283 stress 9.811513e-05 
## ... Procrustes: rmse 0.0002308298  max resid 0.0004153807 
## ... Similar to previous best
## Run 284 stress 9.611187e-05 
## ... Procrustes: rmse 0.0001543682  max resid 0.0003302341 
## ... Similar to previous best
## Run 285 stress 9.900123e-05 
## ... Procrustes: rmse 0.0001251055  max resid 0.0002973169 
## ... Similar to previous best
## Run 286 stress 9.912449e-05 
## ... Procrustes: rmse 0.0002969786  max resid 0.0006075496 
## ... Similar to previous best
## Run 287 stress 9.909407e-05 
## ... Procrustes: rmse 0.0002515682  max resid 0.0004913206 
## ... Similar to previous best
## Run 288 stress 9.902482e-05 
## ... Procrustes: rmse 0.0003416644  max resid 0.0006362365 
## ... Similar to previous best
## Run 289 stress 9.776024e-05 
## ... Procrustes: rmse 0.0003182947  max resid 0.0006438087 
## ... Similar to previous best
## Run 290 stress 9.498607e-05 
## ... Procrustes: rmse 0.000280928  max resid 0.0005823334 
## ... Similar to previous best
## Run 291 stress 9.838809e-05 
## ... Procrustes: rmse 0.0002202825  max resid 0.0003980795 
## ... Similar to previous best
## Run 292 stress 9.992565e-05 
## ... Procrustes: rmse 0.0002694954  max resid 0.0004130538 
## ... Similar to previous best
## Run 293 stress 9.530931e-05 
## ... Procrustes: rmse 0.0001215244  max resid 0.0002934332 
## ... Similar to previous best
## Run 294 stress 9.837354e-05 
## ... Procrustes: rmse 0.0003430014  max resid 0.000603094 
## ... Similar to previous best
## Run 295 stress 9.914116e-05 
## ... Procrustes: rmse 0.0001280298  max resid 0.0003084689 
## ... Similar to previous best
## Run 296 stress 9.69167e-05 
## ... Procrustes: rmse 7.07671e-05  max resid 0.0001124556 
## ... Similar to previous best
## Run 297 stress 9.444154e-05 
## ... Procrustes: rmse 0.0001197948  max resid 0.000295692 
## ... Similar to previous best
## Run 298 stress 9.921749e-05 
## ... Procrustes: rmse 0.0003304396  max resid 0.0005026145 
## ... Similar to previous best
## Run 299 stress 9.136575e-05 
## ... Procrustes: rmse 0.0001952344  max resid 0.0003829882 
## ... Similar to previous best
## Run 300 stress 9.861913e-05 
## ... Procrustes: rmse 0.0002021684  max resid 0.0003372727 
## ... Similar to previous best
## Run 301 stress 9.849586e-05 
## ... Procrustes: rmse 0.0003097961  max resid 0.0005989233 
## ... Similar to previous best
## Run 302 stress 9.236507e-05 
## ... Procrustes: rmse 0.000311656  max resid 0.0006341206 
## ... Similar to previous best
## Run 303 stress 0.3407333 
## Run 304 stress 9.887468e-05 
## ... Procrustes: rmse 0.0002346671  max resid 0.0003778569 
## ... Similar to previous best
## Run 305 stress 9.925757e-05 
## ... Procrustes: rmse 0.0003390372  max resid 0.0005607063 
## ... Similar to previous best
## Run 306 stress 9.798706e-05 
## ... Procrustes: rmse 0.0001959559  max resid 0.0002894044 
## ... Similar to previous best
## Run 307 stress 9.850079e-05 
## ... Procrustes: rmse 0.0003398058  max resid 0.0006318384 
## ... Similar to previous best
## Run 308 stress 9.874719e-05 
## ... Procrustes: rmse 0.0002224853  max resid 0.0003963738 
## ... Similar to previous best
## Run 309 stress 9.570158e-05 
## ... Procrustes: rmse 0.0001535806  max resid 0.0003333251 
## ... Similar to previous best
## Run 310 stress 8.892742e-05 
## ... Procrustes: rmse 0.0001258947  max resid 0.0002321976 
## ... Similar to previous best
## Run 311 stress 9.981091e-05 
## ... Procrustes: rmse 0.0003488082  max resid 0.0006126613 
## ... Similar to previous best
## Run 312 stress 9.893508e-05 
## ... Procrustes: rmse 0.0003376705  max resid 0.0006458987 
## ... Similar to previous best
## Run 313 stress 9.634322e-05 
## ... Procrustes: rmse 0.0001940572  max resid 0.0003302235 
## ... Similar to previous best
## Run 314 stress 9.811456e-05 
## ... Procrustes: rmse 0.0003157286  max resid 0.0006340475 
## ... Similar to previous best
## Run 315 stress 9.811382e-05 
## ... Procrustes: rmse 0.0001280968  max resid 0.0003316811 
## ... Similar to previous best
## Run 316 stress 9.828801e-05 
## ... Procrustes: rmse 0.0002786088  max resid 0.0004786343 
## ... Similar to previous best
## Run 317 stress 9.997196e-05 
## ... Procrustes: rmse 0.0003441001  max resid 0.000645948 
## ... Similar to previous best
## Run 318 stress 9.82846e-05 
## ... Procrustes: rmse 0.0002735733  max resid 0.0004920144 
## ... Similar to previous best
## Run 319 stress 9.656541e-05 
## ... Procrustes: rmse 0.0001555902  max resid 0.0003371599 
## ... Similar to previous best
## Run 320 stress 0.2448021 
## Run 321 stress 9.782779e-05 
## ... Procrustes: rmse 0.0003056194  max resid 0.0006169381 
## ... Similar to previous best
## Run 322 stress 9.949768e-05 
## ... Procrustes: rmse 0.0003400436  max resid 0.0005622704 
## ... Similar to previous best
## Run 323 stress 9.925983e-05 
## ... Procrustes: rmse 0.0003110373  max resid 0.0004786162 
## ... Similar to previous best
## Run 324 stress 8.053355e-05 
## ... Procrustes: rmse 0.0001043356  max resid 0.0002105651 
## ... Similar to previous best
## Run 325 stress 9.915558e-05 
## ... Procrustes: rmse 0.000161085  max resid 0.0003438416 
## ... Similar to previous best
## Run 326 stress 9.902138e-05 
## ... Procrustes: rmse 0.0003382426  max resid 0.000561703 
## ... Similar to previous best
## Run 327 stress 9.799901e-05 
## ... Procrustes: rmse 0.0002535463  max resid 0.0004363612 
## ... Similar to previous best
## Run 328 stress 9.913711e-05 
## ... Procrustes: rmse 0.0003255968  max resid 0.0005772349 
## ... Similar to previous best
## Run 329 stress 9.545764e-05 
## ... Procrustes: rmse 0.0001921385  max resid 0.0003183518 
## ... Similar to previous best
## Run 330 stress 9.762134e-05 
## ... Procrustes: rmse 0.0001532064  max resid 0.0003283446 
## ... Similar to previous best
## Run 331 stress 9.909103e-05 
## ... Procrustes: rmse 0.000341694  max resid 0.0006403127 
## ... Similar to previous best
## Run 332 stress 9.811065e-05 
## ... Procrustes: rmse 0.0001256543  max resid 0.0003000342 
## ... Similar to previous best
## Run 333 stress 9.84776e-05 
## ... Procrustes: rmse 0.0002458006  max resid 0.0004857166 
## ... Similar to previous best
## Run 334 stress 9.706712e-05 
## ... Procrustes: rmse 0.0003305344  max resid 0.0005439644 
## ... Similar to previous best
## Run 335 stress 9.730436e-05 
## ... Procrustes: rmse 0.0002988661  max resid 0.0005754422 
## ... Similar to previous best
## Run 336 stress 9.824136e-05 
## ... Procrustes: rmse 0.000235336  max resid 0.0003796137 
## ... Similar to previous best
## Run 337 stress 9.917672e-05 
## ... Procrustes: rmse 0.0002760349  max resid 0.0004655461 
## ... Similar to previous best
## Run 338 stress 9.875023e-05 
## ... Procrustes: rmse 0.000331636  max resid 0.0005057171 
## ... Similar to previous best
## Run 339 stress 9.537781e-05 
## ... Procrustes: rmse 0.0001542121  max resid 0.0003383046 
## ... Similar to previous best
## Run 340 stress 0.2581126 
## Run 341 stress 9.682342e-05 
## ... Procrustes: rmse 0.0001785741  max resid 0.0003380405 
## ... Similar to previous best
## Run 342 stress 9.762929e-05 
## ... Procrustes: rmse 0.0002392781  max resid 0.0003605404 
## ... Similar to previous best
## Run 343 stress 9.9302e-05 
## ... Procrustes: rmse 0.0001523676  max resid 0.0002517062 
## ... Similar to previous best
## Run 344 stress 9.885644e-05 
## ... Procrustes: rmse 0.0003408411  max resid 0.0006373318 
## ... Similar to previous best
## Run 345 stress 9.644944e-05 
## ... Procrustes: rmse 0.00012269  max resid 0.0002919332 
## ... Similar to previous best
## Run 346 stress 9.859703e-05 
## ... Procrustes: rmse 0.0003438252  max resid 0.0006027701 
## ... Similar to previous best
## Run 347 stress 9.616376e-05 
## ... Procrustes: rmse 0.0002071857  max resid 0.000394745 
## ... Similar to previous best
## Run 348 stress 9.693831e-05 
## ... Procrustes: rmse 0.0002917195  max resid 0.0005986035 
## ... Similar to previous best
## Run 349 stress 9.915154e-05 
## ... Procrustes: rmse 0.0002350371  max resid 0.0004809949 
## ... Similar to previous best
## Run 350 stress 9.604154e-05 
## ... Procrustes: rmse 0.0002451802  max resid 0.000484687 
## ... Similar to previous best
## Run 351 stress 9.84665e-05 
## ... Procrustes: rmse 0.0002647504  max resid 0.0004076352 
## ... Similar to previous best
## Run 352 stress 9.788236e-05 
## ... Procrustes: rmse 0.0003334459  max resid 0.0006133868 
## ... Similar to previous best
## Run 353 stress 9.549359e-05 
## ... Procrustes: rmse 0.0003019357  max resid 0.0005892031 
## ... Similar to previous best
## Run 354 stress 9.651087e-05 
## ... Procrustes: rmse 0.0003316841  max resid 0.0006255532 
## ... Similar to previous best
## Run 355 stress 9.951612e-05 
## ... Procrustes: rmse 0.00034775  max resid 0.0006106964 
## ... Similar to previous best
## Run 356 stress 9.66372e-05 
## ... Procrustes: rmse 0.0003339842  max resid 0.0006223234 
## ... Similar to previous best
## Run 357 stress 9.858456e-05 
## ... Procrustes: rmse 0.0003210377  max resid 0.0006451375 
## ... Similar to previous best
## Run 358 stress 9.550965e-05 
## ... Procrustes: rmse 5.506163e-05  max resid 0.0001012085 
## ... Similar to previous best
## Run 359 stress 9.840164e-05 
## ... Procrustes: rmse 0.0003210439  max resid 0.0004814805 
## ... Similar to previous best
## Run 360 stress 9.739369e-05 
## ... Procrustes: rmse 0.0003284322  max resid 0.0004994853 
## ... Similar to previous best
## Run 361 stress 9.480052e-05 
## ... Procrustes: rmse 0.0001567475  max resid 0.0003433006 
## ... Similar to previous best
## Run 362 stress 9.83742e-05 
## ... Procrustes: rmse 0.0003377956  max resid 0.0006240967 
## ... Similar to previous best
## Run 363 stress 9.96228e-05 
## ... Procrustes: rmse 0.000343335  max resid 0.0006425712 
## ... Similar to previous best
## Run 364 stress 9.865166e-05 
## ... Procrustes: rmse 0.0002641713  max resid 0.0004060927 
## ... Similar to previous best
## Run 365 stress 9.712131e-05 
## ... Procrustes: rmse 0.0001460172  max resid 0.0002493672 
## ... Similar to previous best
## Run 366 stress 9.864513e-05 
## ... Procrustes: rmse 0.0003396911  max resid 0.0006318743 
## ... Similar to previous best
## Run 367 stress 9.866556e-05 
## ... Procrustes: rmse 0.000193333  max resid 0.0003442633 
## ... Similar to previous best
## Run 368 stress 9.338276e-05 
## ... Procrustes: rmse 0.0003135719  max resid 0.0005843685 
## ... Similar to previous best
## Run 369 stress 9.233205e-05 
## ... Procrustes: rmse 0.0001504133  max resid 0.0003668752 
## ... Similar to previous best
## Run 370 stress 9.815638e-05 
## ... Procrustes: rmse 0.0003343007  max resid 0.0005483466 
## ... Similar to previous best
## Run 371 stress 9.768115e-05 
## ... Procrustes: rmse 0.0002769301  max resid 0.0004743254 
## ... Similar to previous best
## Run 372 stress 9.839534e-05 
## ... Procrustes: rmse 0.0003326415  max resid 0.0006311331 
## ... Similar to previous best
## Run 373 stress 9.800866e-05 
## ... Procrustes: rmse 0.0002933611  max resid 0.0006020318 
## ... Similar to previous best
## Run 374 stress 9.74461e-05 
## ... Procrustes: rmse 0.0002493761  max resid 0.0004897924 
## ... Similar to previous best
## Run 375 stress 9.99766e-05 
## ... Procrustes: rmse 0.0002791027  max resid 0.0004747043 
## ... Similar to previous best
## Run 376 stress 9.604714e-05 
## ... Procrustes: rmse 0.0002411919  max resid 0.0004778243 
## ... Similar to previous best
## Run 377 stress 9.351193e-05 
## ... Procrustes: rmse 0.0001878585  max resid 0.000285031 
## ... Similar to previous best
## Run 378 stress 9.629118e-05 
## ... Procrustes: rmse 0.0001564018  max resid 0.0003373607 
## ... Similar to previous best
## Run 379 stress 9.508753e-05 
## ... Procrustes: rmse 0.0001741452  max resid 0.0003804773 
## ... Similar to previous best
## Run 380 stress 9.96534e-05 
## ... Procrustes: rmse 0.000192972  max resid 0.0003441 
## ... Similar to previous best
## Run 381 stress 9.062629e-05 
## ... Procrustes: rmse 0.000189366  max resid 0.000311047 
## ... Similar to previous best
## Run 382 stress 9.95134e-05 
## ... Procrustes: rmse 0.000281538  max resid 0.0004851493 
## ... Similar to previous best
## Run 383 stress 9.622764e-05 
## ... Procrustes: rmse 0.0001416513  max resid 0.0002418381 
## ... Similar to previous best
## Run 384 stress 9.792373e-05 
## ... Procrustes: rmse 0.0001435589  max resid 0.000312618 
## ... Similar to previous best
## Run 385 stress 9.845884e-05 
## ... Procrustes: rmse 0.0002568944  max resid 0.0004945651 
## ... Similar to previous best
## Run 386 stress 9.816982e-05 
## ... Procrustes: rmse 0.0003350572  max resid 0.0005542451 
## ... Similar to previous best
## Run 387 stress 9.513616e-05 
## ... Procrustes: rmse 0.0001731956  max resid 0.0003078997 
## ... Similar to previous best
## Run 388 stress 9.979887e-05 
## ... Procrustes: rmse 0.0003317742  max resid 0.0005573459 
## ... Similar to previous best
## Run 389 stress 9.43632e-05 
## ... Procrustes: rmse 0.0001210793  max resid 0.0002949282 
## ... Similar to previous best
## Run 390 stress 9.639645e-05 
## ... Procrustes: rmse 0.000323853  max resid 0.0004911747 
## ... Similar to previous best
## Run 391 stress 9.900937e-05 
## ... Procrustes: rmse 0.0003324756  max resid 0.0005049848 
## ... Similar to previous best
## Run 392 stress 9.709351e-05 
## ... Procrustes: rmse 0.0001774759  max resid 0.0003102059 
## ... Similar to previous best
## Run 393 stress 9.880357e-05 
## ... Procrustes: rmse 0.0002965573  max resid 0.0006074996 
## ... Similar to previous best
## Run 394 stress 9.82632e-05 
## ... Procrustes: rmse 0.0003471768  max resid 0.000659688 
## ... Similar to previous best
## Run 395 stress 9.583024e-05 
## ... Procrustes: rmse 0.0001232691  max resid 0.0002965565 
## ... Similar to previous best
## Run 396 stress 9.30383e-05 
## ... Procrustes: rmse 0.0002162117  max resid 0.0003571044 
## ... Similar to previous best
## Run 397 stress 8.577675e-05 
## ... Procrustes: rmse 0.0001589673  max resid 0.0003582961 
## ... Similar to previous best
## Run 398 stress 9.216253e-05 
## ... Procrustes: rmse 0.0001677118  max resid 0.0003723602 
## ... Similar to previous best
## Run 399 stress 8.960987e-05 
## ... Procrustes: rmse 0.0002392034  max resid 0.0004056286 
## ... Similar to previous best
## Run 400 stress 9.717591e-05 
## ... Procrustes: rmse 0.0002777955  max resid 0.0005737107 
## ... Similar to previous best
## Run 401 stress 9.491768e-05 
## ... Procrustes: rmse 0.0003037587  max resid 0.0006154829 
## ... Similar to previous best
## Run 402 stress 9.903029e-05 
## ... Procrustes: rmse 0.0001258364  max resid 0.0002608561 
## ... Similar to previous best
## Run 403 stress 9.930474e-05 
## ... Procrustes: rmse 0.0001444602  max resid 0.0002488783 
## ... Similar to previous best
## Run 404 stress 9.794006e-05 
## ... Procrustes: rmse 0.0001946127  max resid 0.0004594688 
## ... Similar to previous best
## Run 405 stress 9.310702e-05 
## ... Procrustes: rmse 0.0001700986  max resid 0.0003749811 
## ... Similar to previous best
## Run 406 stress 8.645332e-05 
## ... Procrustes: rmse 0.0002945855  max resid 0.0005428686 
## ... Similar to previous best
## Run 407 stress 9.691165e-05 
## ... Procrustes: rmse 0.0001902747  max resid 0.0003612784 
## ... Similar to previous best
## Run 408 stress 9.180479e-05 
## ... Procrustes: rmse 0.000172588  max resid 0.0003556366 
## ... Similar to previous best
## Run 409 stress 9.693583e-05 
## ... Procrustes: rmse 0.0001948031  max resid 0.0003918202 
## ... Similar to previous best
## Run 410 stress 9.803959e-05 
## ... Procrustes: rmse 0.0001252863  max resid 0.0003135431 
## ... Similar to previous best
## Run 411 stress 9.780679e-05 
## ... Procrustes: rmse 0.0002316877  max resid 0.0003767378 
## ... Similar to previous best
## Run 412 stress 9.955093e-05 
## ... Procrustes: rmse 0.0001416407  max resid 0.0003571935 
## ... Similar to previous best
## Run 413 stress 9.719574e-05 
## ... Procrustes: rmse 0.0002498391  max resid 0.0004331889 
## ... Similar to previous best
## Run 414 stress 9.982919e-05 
## ... Procrustes: rmse 0.0001453216  max resid 0.0002420648 
## ... Similar to previous best
## Run 415 stress 8.166527e-05 
## ... Procrustes: rmse 0.0001954743  max resid 0.000398208 
## ... Similar to previous best
## Run 416 stress 9.921356e-05 
## ... Procrustes: rmse 0.000184797  max resid 0.0004325044 
## ... Similar to previous best
## Run 417 stress 9.898688e-05 
## ... Procrustes: rmse 0.0003401246  max resid 0.0006343251 
## ... Similar to previous best
## Run 418 stress 9.879158e-05 
## ... Procrustes: rmse 0.0002504924  max resid 0.0004902897 
## ... Similar to previous best
## Run 419 stress 9.679115e-05 
## ... Procrustes: rmse 0.0002456385  max resid 0.0004862883 
## ... Similar to previous best
## Run 420 stress 9.607712e-05 
## ... Procrustes: rmse 0.0001866545  max resid 0.0003341795 
## ... Similar to previous best
## Run 421 stress 9.656944e-05 
## ... Procrustes: rmse 0.0001450582  max resid 0.0002483846 
## ... Similar to previous best
## Run 422 stress 9.976295e-05 
## ... Procrustes: rmse 0.0001173679  max resid 0.000260433 
## ... Similar to previous best
## Run 423 stress 9.756782e-05 
## ... Procrustes: rmse 0.0002937834  max resid 0.0006026127 
## ... Similar to previous best
## Run 424 stress 9.843132e-05 
## ... Procrustes: rmse 0.0003111529  max resid 0.0006449732 
## ... Similar to previous best
## Run 425 stress 9.889182e-05 
## ... Procrustes: rmse 0.0003453687  max resid 0.0006057234 
## ... Similar to previous best
## Run 426 stress 0.2627752 
## Run 427 stress 9.259338e-05 
## ... Procrustes: rmse 0.0001397265  max resid 0.0003757591 
## ... Similar to previous best
## Run 428 stress 9.599278e-05 
## ... Procrustes: rmse 0.0001436642  max resid 0.0002458114 
## ... Similar to previous best
## Run 429 stress 9.691742e-05 
## ... Procrustes: rmse 0.0001833701  max resid 0.000348537 
## ... Similar to previous best
## Run 430 stress 9.527245e-05 
## ... Procrustes: rmse 0.0003039256  max resid 0.0005219848 
## ... Similar to previous best
## Run 431 stress 9.866555e-05 
## ... Procrustes: rmse 0.0003095935  max resid 0.0006061341 
## ... Similar to previous best
## Run 432 stress 9.895693e-05 
## ... Procrustes: rmse 0.00029757  max resid 0.0006102012 
## ... Similar to previous best
## Run 433 stress 8.696061e-05 
## ... Procrustes: rmse 0.0001899131  max resid 0.0003553055 
## ... Similar to previous best
## Run 434 stress 9.043206e-05 
## ... Procrustes: rmse 0.0001473493  max resid 0.0003223272 
## ... Similar to previous best
## Run 435 stress 9.768803e-05 
## ... Procrustes: rmse 0.0001781754  max resid 0.0003128706 
## ... Similar to previous best
## Run 436 stress 9.806014e-05 
## ... Procrustes: rmse 0.0002329206  max resid 0.0003768569 
## ... Similar to previous best
## Run 437 stress 9.427878e-05 
## ... Procrustes: rmse 0.0002563089  max resid 0.0004427149 
## ... Similar to previous best
## Run 438 stress 9.578318e-05 
## ... Procrustes: rmse 0.0001229641  max resid 0.0002949951 
## ... Similar to previous best
## Run 439 stress 9.95497e-05 
## ... Procrustes: rmse 0.0001296941  max resid 0.0003117162 
## ... Similar to previous best
## Run 440 stress 9.814524e-05 
## ... Procrustes: rmse 0.000254132  max resid 0.0004368651 
## ... Similar to previous best
## Run 441 stress 9.973094e-05 
## ... Procrustes: rmse 0.0003203357  max resid 0.0006440372 
## ... Similar to previous best
## Run 442 stress 9.979218e-05 
## ... Procrustes: rmse 0.0001832233  max resid 0.0003230933 
## ... Similar to previous best
## Run 443 stress 9.928948e-05 
## ... Procrustes: rmse 0.0002888894  max resid 0.0005966352 
## ... Similar to previous best
## Run 444 stress 9.786327e-05 
## ... Procrustes: rmse 0.0001260027  max resid 0.0002992727 
## ... Similar to previous best
## Run 445 stress 9.928982e-05 
## ... Procrustes: rmse 0.000287352  max resid 0.0005900698 
## ... Similar to previous best
## Run 446 stress 9.993935e-05 
## ... Procrustes: rmse 0.0002973588  max resid 0.0006079855 
## ... Similar to previous best
## Run 447 stress 9.637831e-05 
## ... Procrustes: rmse 0.0001473203  max resid 0.0002468084 
## ... Similar to previous best
## Run 448 stress 9.891465e-05 
## ... Procrustes: rmse 0.0001910735  max resid 0.0003569343 
## ... Similar to previous best
## Run 449 stress 9.182631e-05 
## ... Procrustes: rmse 0.0001107935  max resid 0.0002756857 
## ... Similar to previous best
## Run 450 stress 9.593011e-05 
## ... Procrustes: rmse 0.000307512  max resid 0.0005623147 
## ... Similar to previous best
## Run 451 stress 9.609121e-05 
## ... Procrustes: rmse 0.000270248  max resid 0.0004640325 
## ... Similar to previous best
## Run 452 stress 9.962634e-05 
## ... Procrustes: rmse 0.0003329801  max resid 0.0005045624 
## ... Similar to previous best
## Run 453 stress 9.494063e-05 
## ... Procrustes: rmse 0.000150661  max resid 0.0003093652 
## ... Similar to previous best
## Run 454 stress 9.979453e-05 
## ... Procrustes: rmse 0.0003231021  max resid 0.0006211751 
## ... Similar to previous best
## Run 455 stress 9.645678e-05 
## ... Procrustes: rmse 0.0003049812  max resid 0.0006352157 
## ... Similar to previous best
## Run 456 stress 9.448096e-05 
## ... Procrustes: rmse 0.0002383031  max resid 0.0004748696 
## ... Similar to previous best
## Run 457 stress 9.939426e-05 
## ... Procrustes: rmse 0.0003408245  max resid 0.0006349978 
## ... Similar to previous best
## Run 458 stress 9.74302e-05 
## ... Procrustes: rmse 0.0001990026  max resid 0.0003342293 
## ... Similar to previous best
## Run 459 stress 9.916113e-05 
## ... Procrustes: rmse 0.0002915401  max resid 0.0006004617 
## ... Similar to previous best
## Run 460 stress 9.563531e-05 
## ... Procrustes: rmse 0.0001412713  max resid 0.0002453954 
## ... Similar to previous best
## Run 461 stress 9.943822e-05 
## ... Procrustes: rmse 0.0003349849  max resid 0.0005105608 
## ... Similar to previous best
## Run 462 stress 9.77079e-05 
## ... Procrustes: rmse 0.000239755  max resid 0.000360139 
## ... Similar to previous best
## Run 463 stress 9.779357e-05 
## ... Procrustes: rmse 0.0002334893  max resid 0.0003769402 
## ... Similar to previous best
## Run 464 stress 9.706119e-05 
## ... Procrustes: rmse 0.0001572114  max resid 0.0002580487 
## ... Similar to previous best
## Run 465 stress 9.685242e-05 
## ... Procrustes: rmse 0.0002787052  max resid 0.0005860636 
## ... Similar to previous best
## Run 466 stress 9.994108e-05 
## ... Procrustes: rmse 0.0002558687  max resid 0.000498103 
## ... Similar to previous best
## Run 467 stress 9.156996e-05 
## ... Procrustes: rmse 0.0001153147  max resid 0.0002979971 
## ... Similar to previous best
## Run 468 stress 0.2357285 
## Run 469 stress 9.79154e-05 
## ... Procrustes: rmse 0.0003392464  max resid 0.0005955055 
## ... Similar to previous best
## Run 470 stress 9.92524e-05 
## ... Procrustes: rmse 0.0003358717  max resid 0.0005509625 
## ... Similar to previous best
## Run 471 stress 9.867965e-05 
## ... Procrustes: rmse 0.00019014  max resid 0.0003564503 
## ... Similar to previous best
## Run 472 stress 9.585511e-05 
## ... Procrustes: rmse 0.000331081  max resid 0.0006152963 
## ... Similar to previous best
## Run 473 stress 8.915309e-05 
## ... Procrustes: rmse 0.0002249536  max resid 0.0004588856 
## ... Similar to previous best
## Run 474 stress 9.692544e-05 
## ... Procrustes: rmse 0.0001241845  max resid 0.0002955527 
## ... Similar to previous best
## Run 475 stress 9.666023e-05 
## ... Procrustes: rmse 0.0002298208  max resid 0.0003715493 
## ... Similar to previous best
## Run 476 stress 9.378322e-05 
## ... Procrustes: rmse 0.0002798617  max resid 0.0005789074 
## ... Similar to previous best
## Run 477 stress 9.486854e-05 
## ... Procrustes: rmse 0.0001733573  max resid 0.0003077551 
## ... Similar to previous best
## Run 478 stress 9.874413e-05 
## ... Procrustes: rmse 0.0003404292  max resid 0.0006360096 
## ... Similar to previous best
## Run 479 stress 9.944239e-05 
## ... Procrustes: rmse 0.0002448896  max resid 0.0004838484 
## ... Similar to previous best
## Run 480 stress 9.850921e-05 
## ... Procrustes: rmse 0.0003116282  max resid 0.0006065741 
## ... Similar to previous best
## Run 481 stress 9.832606e-05 
## ... Procrustes: rmse 0.0001923117  max resid 0.0003448231 
## ... Similar to previous best
## Run 482 stress 9.952582e-05 
## ... Procrustes: rmse 0.000314477  max resid 0.0006104126 
## ... Similar to previous best
## Run 483 stress 9.979053e-05 
## ... Procrustes: rmse 0.0003491432  max resid 0.0006131709 
## ... Similar to previous best
## Run 484 stress 9.865426e-05 
## ... Procrustes: rmse 0.00025233  max resid 0.000493016 
## ... Similar to previous best
## Run 485 stress 9.933828e-05 
## ... Procrustes: rmse 0.0003358152  max resid 0.0005504408 
## ... Similar to previous best
## Run 486 stress 9.897096e-05 
## ... Procrustes: rmse 0.0001516298  max resid 0.0002516696 
## ... Similar to previous best
## Run 487 stress 9.150479e-05 
## ... Procrustes: rmse 0.0001678813  max resid 0.0003715403 
## ... Similar to previous best
## Run 488 stress 9.518695e-05 
## ... Procrustes: rmse 0.000121656  max resid 0.000299594 
## ... Similar to previous best
## Run 489 stress 9.833361e-05 
## ... Procrustes: rmse 0.0002488807  max resid 0.0004895553 
## ... Similar to previous best
## Run 490 stress 9.919496e-05 
## ... Procrustes: rmse 0.0003388692  max resid 0.0005628293 
## ... Similar to previous best
## Run 491 stress 9.524463e-05 
## ... Procrustes: rmse 0.0003239924  max resid 0.0005361357 
## ... Similar to previous best
## Run 492 stress 9.56446e-05 
## ... Procrustes: rmse 0.0002239155  max resid 0.0003670331 
## ... Similar to previous best
## Run 493 stress 9.530466e-05 
## ... Procrustes: rmse 0.000234316  max resid 0.0004700335 
## ... Similar to previous best
## Run 494 stress 9.835092e-05 
## ... Procrustes: rmse 0.0001759861  max resid 0.000382952 
## ... Similar to previous best
## Run 495 stress 9.725162e-05 
## ... Procrustes: rmse 0.0002466919  max resid 0.0004874793 
## ... Similar to previous best
## Run 496 stress 9.28143e-05 
## ... Procrustes: rmse 0.0001633103  max resid 0.0003629456 
## ... Similar to previous best
## Run 497 stress 9.927771e-05 
## ... Procrustes: rmse 0.0001472264  max resid 0.0002518653 
## ... Similar to previous best
## Run 498 stress 9.993281e-05 
## ... Procrustes: rmse 0.0001742422  max resid 0.0003186161 
## ... Similar to previous best
## Run 499 stress 9.627144e-05 
## ... Procrustes: rmse 0.0002895768  max resid 0.0005956214 
## ... Similar to previous best
## Run 500 stress 8.986514e-05 
## ... Procrustes: rmse 0.000146835  max resid 0.0003205697 
## ... Similar to previous best
## *** Best solution repeated 232 times
## Warning in metaMDS(pdeso_dist, try = 1000, parallel = 4, previous.best, :
## stress is (nearly) zero: you may have insufficient data
### Biogeographic
pdb_NMDS <- metaMDS(pdb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.08126274 
## Run 1 stress 0.0898624 
## Run 2 stress 0.08214344 
## Run 3 stress 0.08152768 
## ... Procrustes: rmse 0.01614718  max resid 0.05109388 
## Run 4 stress 0.1059303 
## Run 5 stress 0.08269655 
## Run 6 stress 0.08976426 
## Run 7 stress 0.08269666 
## Run 8 stress 0.08156447 
## ... Procrustes: rmse 0.02288236  max resid 0.07971365 
## Run 9 stress 0.1078434 
## Run 10 stress 0.08156448 
## ... Procrustes: rmse 0.02289508  max resid 0.07984469 
## Run 11 stress 0.0815544 
## ... Procrustes: rmse 0.01385916  max resid 0.05232924 
## Run 12 stress 0.0815544 
## ... Procrustes: rmse 0.01383552  max resid 0.05220807 
## Run 13 stress 0.09031456 
## Run 14 stress 0.09097327 
## Run 15 stress 0.08106097 
## ... New best solution
## ... Procrustes: rmse 0.01028676  max resid 0.03732631 
## Run 16 stress 0.09031454 
## Run 17 stress 0.1078435 
## Run 18 stress 0.08155429 
## ... Procrustes: rmse 0.01793862  max resid 0.05403403 
## Run 19 stress 0.09128269 
## Run 20 stress 0.08214344 
## Run 21 stress 0.08976422 
## Run 22 stress 0.08126269 
## ... Procrustes: rmse 0.01029081  max resid 0.03727235 
## Run 23 stress 0.08152784 
## ... Procrustes: rmse 0.01412085  max resid 0.05314554 
## Run 24 stress 0.08155428 
## ... Procrustes: rmse 0.01793443  max resid 0.0539897 
## Run 25 stress 0.08155441 
## ... Procrustes: rmse 0.01794413  max resid 0.05411477 
## Run 26 stress 0.08269671 
## Run 27 stress 0.08155451 
## ... Procrustes: rmse 0.01794459  max resid 0.05414081 
## Run 28 stress 0.100381 
## Run 29 stress 0.08976395 
## Run 30 stress 0.0908595 
## Run 31 stress 0.09097328 
## Run 32 stress 0.08106097 
## ... New best solution
## ... Procrustes: rmse 0.0002419789  max resid 0.0008765032 
## ... Similar to previous best
## Run 33 stress 0.1048345 
## Run 34 stress 0.08155438 
## ... Procrustes: rmse 0.0178867  max resid 0.05362103 
## Run 35 stress 0.08126276 
## ... Procrustes: rmse 0.01028034  max resid 0.03724729 
## Run 36 stress 0.08156446 
## Run 37 stress 0.1029437 
## Run 38 stress 0.08269663 
## Run 39 stress 0.08976409 
## Run 40 stress 0.08156447 
## Run 41 stress 0.08126272 
## ... Procrustes: rmse 0.01026407  max resid 0.03718216 
## Run 42 stress 0.08106091 
## ... New best solution
## ... Procrustes: rmse 7.511909e-05  max resid 0.0002520492 
## ... Similar to previous best
## Run 43 stress 0.08126269 
## ... Procrustes: rmse 0.01027911  max resid 0.03725041 
## Run 44 stress 0.08152778 
## ... Procrustes: rmse 0.01405063  max resid 0.0527734 
## Run 45 stress 0.09031452 
## Run 46 stress 0.08155444 
## ... Procrustes: rmse 0.01791317  max resid 0.05372533 
## Run 47 stress 0.08986239 
## Run 48 stress 0.08126285 
## ... Procrustes: rmse 0.01027068  max resid 0.03721449 
## Run 49 stress 0.08986245 
## Run 50 stress 0.08126269 
## ... Procrustes: rmse 0.01027874  max resid 0.03724994 
## Run 51 stress 0.08152777 
## ... Procrustes: rmse 0.01405892  max resid 0.05281642 
## Run 52 stress 0.09432779 
## Run 53 stress 0.08152771 
## ... Procrustes: rmse 0.01403681  max resid 0.05270201 
## Run 54 stress 0.08152774 
## ... Procrustes: rmse 0.01403596  max resid 0.05270066 
## Run 55 stress 0.0815279 
## ... Procrustes: rmse 0.01406589  max resid 0.05285172 
## Run 56 stress 0.09024779 
## Run 57 stress 0.09031451 
## Run 58 stress 0.09097334 
## Run 59 stress 0.08156447 
## Run 60 stress 0.08986238 
## Run 61 stress 0.08106092 
## ... Procrustes: rmse 0.0001223993  max resid 0.0004272938 
## ... Similar to previous best
## Run 62 stress 0.09097327 
## Run 63 stress 0.08152778 
## ... Procrustes: rmse 0.01405139  max resid 0.05277729 
## Run 64 stress 0.1056117 
## Run 65 stress 0.08155432 
## ... Procrustes: rmse 0.01792417  max resid 0.05393273 
## Run 66 stress 0.09149139 
## Run 67 stress 0.08156446 
## Run 68 stress 0.1061746 
## Run 69 stress 0.08214351 
## Run 70 stress 0.08126269 
## ... Procrustes: rmse 0.01027954  max resid 0.03725335 
## Run 71 stress 0.08214348 
## Run 72 stress 0.1026422 
## Run 73 stress 0.08126278 
## ... Procrustes: rmse 0.01027389  max resid 0.03722871 
## Run 74 stress 0.081061 
## ... Procrustes: rmse 0.0001877529  max resid 0.0006762821 
## ... Similar to previous best
## Run 75 stress 0.08156455 
## Run 76 stress 0.08152787 
## ... Procrustes: rmse 0.01406387  max resid 0.0528391 
## Run 77 stress 0.08269655 
## Run 78 stress 0.09079867 
## Run 79 stress 0.1021548 
## Run 80 stress 0.08126279 
## ... Procrustes: rmse 0.01027298  max resid 0.0372253 
## Run 81 stress 0.08155432 
## ... Procrustes: rmse 0.01790763  max resid 0.05375063 
## Run 82 stress 0.08214344 
## Run 83 stress 0.1049027 
## Run 84 stress 0.1012502 
## Run 85 stress 0.08152775 
## ... Procrustes: rmse 0.01396929  max resid 0.05232697 
## Run 86 stress 0.08269647 
## Run 87 stress 0.08152796 
## ... Procrustes: rmse 0.01408444  max resid 0.05294667 
## Run 88 stress 0.08986251 
## Run 89 stress 0.1006555 
## Run 90 stress 0.1050738 
## Run 91 stress 0.09031459 
## Run 92 stress 0.08152769 
## ... Procrustes: rmse 0.01403092  max resid 0.05267063 
## Run 93 stress 0.08156447 
## Run 94 stress 0.08155435 
## ... Procrustes: rmse 0.01793503  max resid 0.0540053 
## Run 95 stress 0.08126271 
## ... Procrustes: rmse 0.01027781  max resid 0.03724659 
## Run 96 stress 0.08126273 
## ... Procrustes: rmse 0.01027896  max resid 0.03725043 
## Run 97 stress 0.1028355 
## Run 98 stress 0.08155429 
## ... Procrustes: rmse 0.01792671  max resid 0.05390948 
## Run 99 stress 0.0815543 
## ... Procrustes: rmse 0.0179384  max resid 0.05398106 
## Run 100 stress 0.1029442 
## Run 101 stress 0.08156446 
## Run 102 stress 0.08156446 
## Run 103 stress 0.09118065 
## Run 104 stress 0.08152781 
## ... Procrustes: rmse 0.01398641  max resid 0.05241261 
## Run 105 stress 0.1057893 
## Run 106 stress 0.1006558 
## Run 107 stress 0.08152769 
## ... Procrustes: rmse 0.01402938  max resid 0.05266382 
## Run 108 stress 0.08155433 
## ... Procrustes: rmse 0.01792358  max resid 0.05393083 
## Run 109 stress 0.08156446 
## Run 110 stress 0.08126272 
## ... Procrustes: rmse 0.01027777  max resid 0.03724678 
## Run 111 stress 0.08156447 
## Run 112 stress 0.08986241 
## Run 113 stress 0.08156448 
## Run 114 stress 0.09128258 
## Run 115 stress 0.09097327 
## Run 116 stress 0.09222198 
## Run 117 stress 0.08156447 
## Run 118 stress 0.08214352 
## Run 119 stress 0.09118068 
## Run 120 stress 0.09118065 
## Run 121 stress 0.09097329 
## Run 122 stress 0.08155432 
## ... Procrustes: rmse 0.01790819  max resid 0.05376312 
## Run 123 stress 0.1057893 
## Run 124 stress 0.08269668 
## Run 125 stress 0.09118068 
## Run 126 stress 0.0898624 
## Run 127 stress 0.08986242 
## Run 128 stress 0.08986244 
## Run 129 stress 0.09097329 
## Run 130 stress 0.09079867 
## Run 131 stress 0.09208521 
## Run 132 stress 0.08986265 
## Run 133 stress 0.1019327 
## Run 134 stress 0.09097328 
## Run 135 stress 0.0812627 
## ... Procrustes: rmse 0.01028985  max resid 0.03729163 
## Run 136 stress 0.08106091 
## ... Procrustes: rmse 0.0001058669  max resid 0.0003714009 
## ... Similar to previous best
## Run 137 stress 0.08126269 
## ... Procrustes: rmse 0.01028135  max resid 0.03725724 
## Run 138 stress 0.08126281 
## ... Procrustes: rmse 0.01027383  max resid 0.0372287 
## Run 139 stress 0.08126284 
## ... Procrustes: rmse 0.0102989  max resid 0.03731978 
## Run 140 stress 0.08976393 
## Run 141 stress 0.09128261 
## Run 142 stress 0.09085948 
## Run 143 stress 0.08269633 
## Run 144 stress 0.0826967 
## Run 145 stress 0.1041304 
## Run 146 stress 0.09085945 
## Run 147 stress 0.08106093 
## ... Procrustes: rmse 0.0001114312  max resid 0.0004003324 
## ... Similar to previous best
## Run 148 stress 0.08126271 
## ... Procrustes: rmse 0.01027864  max resid 0.03725007 
## Run 149 stress 0.08214347 
## Run 150 stress 0.08156446 
## Run 151 stress 0.08976402 
## Run 152 stress 0.09031451 
## Run 153 stress 0.08986239 
## Run 154 stress 0.08156446 
## Run 155 stress 0.08976406 
## Run 156 stress 0.08155438 
## ... Procrustes: rmse 0.01794319  max resid 0.05392042 
## Run 157 stress 0.09024779 
## Run 158 stress 0.09128263 
## Run 159 stress 0.08156448 
## Run 160 stress 0.09031462 
## Run 161 stress 0.09085953 
## Run 162 stress 0.09118075 
## Run 163 stress 0.08155429 
## ... Procrustes: rmse 0.01791521  max resid 0.05382036 
## Run 164 stress 0.09131345 
## Run 165 stress 0.08976448 
## Run 166 stress 0.08126284 
## ... Procrustes: rmse 0.01029936  max resid 0.03732032 
## Run 167 stress 0.09128264 
## Run 168 stress 0.0898626 
## Run 169 stress 0.09118065 
## Run 170 stress 0.08986242 
## Run 171 stress 0.08126271 
## ... Procrustes: rmse 0.01027783  max resid 0.03724672 
## Run 172 stress 0.08106102 
## ... Procrustes: rmse 0.0001063894  max resid 0.0003612123 
## ... Similar to previous best
## Run 173 stress 0.08156446 
## Run 174 stress 0.08152769 
## ... Procrustes: rmse 0.01402927  max resid 0.05266362 
## Run 175 stress 0.08156446 
## Run 176 stress 0.1012499 
## Run 177 stress 0.09079866 
## Run 178 stress 0.08156448 
## Run 179 stress 0.0909733 
## Run 180 stress 0.09085954 
## Run 181 stress 0.1070554 
## Run 182 stress 0.0821435 
## Run 183 stress 0.0902478 
## Run 184 stress 0.08986241 
## Run 185 stress 0.08155437 
## ... Procrustes: rmse 0.01792877  max resid 0.05397903 
## Run 186 stress 0.09118059 
## Run 187 stress 0.1078432 
## Run 188 stress 0.08156451 
## Run 189 stress 0.09149138 
## Run 190 stress 0.1061424 
## Run 191 stress 0.08156446 
## Run 192 stress 0.09118059 
## Run 193 stress 0.1070554 
## Run 194 stress 0.09097344 
## Run 195 stress 0.09097331 
## Run 196 stress 0.0902479 
## Run 197 stress 0.08156446 
## Run 198 stress 0.08214345 
## Run 199 stress 0.08156446 
## Run 200 stress 0.08156446 
## Run 201 stress 0.09085943 
## Run 202 stress 0.1049027 
## Run 203 stress 0.09149136 
## Run 204 stress 0.08156453 
## Run 205 stress 0.08976416 
## Run 206 stress 0.08976411 
## Run 207 stress 0.08106093 
## ... Procrustes: rmse 3.955486e-05  max resid 0.000133627 
## ... Similar to previous best
## Run 208 stress 0.1012499 
## Run 209 stress 0.08106098 
## ... Procrustes: rmse 0.0001729993  max resid 0.0006239717 
## ... Similar to previous best
## Run 210 stress 0.08106098 
## ... Procrustes: rmse 0.0001698249  max resid 0.0006154298 
## ... Similar to previous best
## Run 211 stress 0.09031451 
## Run 212 stress 0.08986263 
## Run 213 stress 0.08106104 
## ... Procrustes: rmse 0.0001326087  max resid 0.0004530076 
## ... Similar to previous best
## Run 214 stress 0.08156447 
## Run 215 stress 0.0821435 
## Run 216 stress 0.08126277 
## ... Procrustes: rmse 0.01029528  max resid 0.03730848 
## Run 217 stress 0.0903145 
## Run 218 stress 0.09118069 
## Run 219 stress 0.08155438 
## ... Procrustes: rmse 0.01789729  max resid 0.05367205 
## Run 220 stress 0.0810609 
## ... New best solution
## ... Procrustes: rmse 7.538173e-05  max resid 0.0002605305 
## ... Similar to previous best
## Run 221 stress 0.08126276 
## ... Procrustes: rmse 0.01028586  max resid 0.03728053 
## Run 222 stress 0.08155438 
## ... Procrustes: rmse 0.01794158  max resid 0.05404671 
## Run 223 stress 0.08106092 
## ... Procrustes: rmse 9.395707e-05  max resid 0.000322506 
## ... Similar to previous best
## Run 224 stress 0.09079866 
## Run 225 stress 0.08156448 
## Run 226 stress 0.08152767 
## ... Procrustes: rmse 0.01400901  max resid 0.05254267 
## Run 227 stress 0.08986244 
## Run 228 stress 0.08106097 
## ... Procrustes: rmse 9.60657e-05  max resid 0.0003453742 
## ... Similar to previous best
## Run 229 stress 0.08155432 
## ... Procrustes: rmse 0.01796082  max resid 0.05404942 
## Run 230 stress 0.08156446 
## Run 231 stress 0.09079867 
## Run 232 stress 0.08156448 
## Run 233 stress 0.08986242 
## Run 234 stress 0.08156456 
## Run 235 stress 0.09128258 
## Run 236 stress 0.09085951 
## Run 237 stress 0.1057893 
## Run 238 stress 0.09024781 
## Run 239 stress 0.08214345 
## Run 240 stress 0.08126285 
## ... Procrustes: rmse 0.0103137  max resid 0.03737106 
## Run 241 stress 0.09024781 
## Run 242 stress 0.08156448 
## Run 243 stress 0.08156447 
## Run 244 stress 0.08156449 
## Run 245 stress 0.0911806 
## Run 246 stress 0.0815645 
## Run 247 stress 0.0911806 
## Run 248 stress 0.08152772 
## ... Procrustes: rmse 0.01397059  max resid 0.05234225 
## Run 249 stress 0.09085947 
## Run 250 stress 0.3566728 
## Run 251 stress 0.08986241 
## Run 252 stress 0.08156446 
## Run 253 stress 0.0810609 
## ... New best solution
## ... Procrustes: rmse 5.360538e-06  max resid 1.361445e-05 
## ... Similar to previous best
## Run 254 stress 0.1049027 
## Run 255 stress 0.09079865 
## Run 256 stress 0.08976408 
## Run 257 stress 0.08269683 
## Run 258 stress 0.09118064 
## Run 259 stress 0.08106092 
## ... Procrustes: rmse 4.649111e-05  max resid 0.0001632013 
## ... Similar to previous best
## Run 260 stress 0.08214355 
## Run 261 stress 0.08214344 
## Run 262 stress 0.08156446 
## Run 263 stress 0.08156447 
## Run 264 stress 0.08152764 
## ... Procrustes: rmse 0.01401601  max resid 0.05258429 
## Run 265 stress 0.0914915 
## Run 266 stress 0.08156449 
## Run 267 stress 0.08156452 
## Run 268 stress 0.09118053 
## Run 269 stress 0.0912826 
## Run 270 stress 0.0912826 
## Run 271 stress 0.0902478 
## Run 272 stress 0.0902478 
## Run 273 stress 0.0898625 
## Run 274 stress 0.09085943 
## Run 275 stress 0.3562761 
## Run 276 stress 0.08126283 
## ... Procrustes: rmse 0.01028112  max resid 0.03725946 
## Run 277 stress 0.08156446 
## Run 278 stress 0.0815645 
## Run 279 stress 0.09232382 
## Run 280 stress 0.08126282 
## ... Procrustes: rmse 0.01028266  max resid 0.03726599 
## Run 281 stress 0.08986242 
## Run 282 stress 0.08976461 
## Run 283 stress 0.08156446 
## Run 284 stress 0.09097328 
## Run 285 stress 0.08986275 
## Run 286 stress 0.09024779 
## Run 287 stress 0.0815645 
## Run 288 stress 0.09432765 
## Run 289 stress 0.08986255 
## Run 290 stress 0.08214344 
## Run 291 stress 0.08976415 
## Run 292 stress 0.09118055 
## Run 293 stress 0.08155432 
## ... Procrustes: rmse 0.01791958  max resid 0.05381936 
## Run 294 stress 0.09031452 
## Run 295 stress 0.09097332 
## Run 296 stress 0.08152778 
## ... Procrustes: rmse 0.01395094  max resid 0.05223365 
## Run 297 stress 0.08156448 
## Run 298 stress 0.08986246 
## Run 299 stress 0.08106091 
## ... Procrustes: rmse 7.238446e-05  max resid 0.0002542883 
## ... Similar to previous best
## Run 300 stress 0.08156447 
## Run 301 stress 0.08152764 
## ... Procrustes: rmse 0.01402395  max resid 0.05262819 
## Run 302 stress 0.09097331 
## Run 303 stress 0.08986249 
## Run 304 stress 0.08214346 
## Run 305 stress 0.1049026 
## Run 306 stress 0.1041614 
## Run 307 stress 0.08156447 
## Run 308 stress 0.08156449 
## Run 309 stress 0.09024784 
## Run 310 stress 0.09085948 
## Run 311 stress 0.08126272 
## ... Procrustes: rmse 0.01028732  max resid 0.03728405 
## Run 312 stress 0.08155429 
## ... Procrustes: rmse 0.01794188  max resid 0.05399798 
## Run 313 stress 0.08156449 
## Run 314 stress 0.08126268 
## ... Procrustes: rmse 0.01029117  max resid 0.03729893 
## Run 315 stress 0.08156446 
## Run 316 stress 0.08155431 
## ... Procrustes: rmse 0.01793202  max resid 0.05396355 
## Run 317 stress 0.08269681 
## Run 318 stress 0.08156448 
## Run 319 stress 0.08126272 
## ... Procrustes: rmse 0.01028694  max resid 0.03728332 
## Run 320 stress 0.0908595 
## Run 321 stress 0.09085944 
## Run 322 stress 0.08126275 
## ... Procrustes: rmse 0.01028881  max resid 0.03729074 
## Run 323 stress 0.08976468 
## Run 324 stress 0.1016169 
## Run 325 stress 0.08986243 
## Run 326 stress 0.08156449 
## Run 327 stress 0.09097338 
## Run 328 stress 0.08976451 
## Run 329 stress 0.08156447 
## Run 330 stress 0.09443166 
## Run 331 stress 0.08155428 
## ... Procrustes: rmse 0.01792551  max resid 0.05390722 
## Run 332 stress 0.08156447 
## Run 333 stress 0.08156446 
## Run 334 stress 0.08152776 
## ... Procrustes: rmse 0.0140594  max resid 0.05281314 
## Run 335 stress 0.09024781 
## Run 336 stress 0.08976395 
## Run 337 stress 0.08156454 
## Run 338 stress 0.09149139 
## Run 339 stress 0.09443182 
## Run 340 stress 0.1048616 
## Run 341 stress 0.08976414 
## Run 342 stress 0.08156449 
## Run 343 stress 0.08976397 
## Run 344 stress 0.0821435 
## Run 345 stress 0.08155428 
## ... Procrustes: rmse 0.01792519  max resid 0.05388888 
## Run 346 stress 0.08155436 
## ... Procrustes: rmse 0.01794428  max resid 0.05406637 
## Run 347 stress 0.08156448 
## Run 348 stress 0.08152784 
## ... Procrustes: rmse 0.01407006  max resid 0.0528639 
## Run 349 stress 0.08106098 
## ... Procrustes: rmse 0.0001031776  max resid 0.0003640154 
## ... Similar to previous best
## Run 350 stress 0.08986243 
## Run 351 stress 0.08156452 
## Run 352 stress 0.0812627 
## ... Procrustes: rmse 0.01028914  max resid 0.03729182 
## Run 353 stress 0.09085944 
## Run 354 stress 0.08214346 
## Run 355 stress 0.08156446 
## Run 356 stress 0.08214347 
## Run 357 stress 0.09097331 
## Run 358 stress 0.08976396 
## Run 359 stress 0.08156447 
## Run 360 stress 0.09432778 
## Run 361 stress 0.09097331 
## Run 362 stress 0.08156449 
## Run 363 stress 0.09097327 
## Run 364 stress 0.08155441 
## ... Procrustes: rmse 0.0178992  max resid 0.05367904 
## Run 365 stress 0.1096928 
## Run 366 stress 0.08156448 
## Run 367 stress 0.08156447 
## Run 368 stress 0.08214344 
## Run 369 stress 0.08155433 
## ... Procrustes: rmse 0.01791793  max resid 0.05380849 
## Run 370 stress 0.08126277 
## ... Procrustes: rmse 0.01028442  max resid 0.03727374 
## Run 371 stress 0.08106091 
## ... Procrustes: rmse 3.106115e-05  max resid 0.0001118581 
## ... Similar to previous best
## Run 372 stress 0.0815544 
## ... Procrustes: rmse 0.01792389  max resid 0.05381274 
## Run 373 stress 0.08106095 
## ... Procrustes: rmse 0.0001347359  max resid 0.0004787301 
## ... Similar to previous best
## Run 374 stress 0.09239146 
## Run 375 stress 0.08155431 
## ... Procrustes: rmse 0.0179337  max resid 0.05397298 
## Run 376 stress 0.08126285 
## ... Procrustes: rmse 0.01031193  max resid 0.03736177 
## Run 377 stress 0.08156446 
## Run 378 stress 0.09024779 
## Run 379 stress 0.08155438 
## ... Procrustes: rmse 0.01793889  max resid 0.05403288 
## Run 380 stress 0.08155438 
## ... Procrustes: rmse 0.01794023  max resid 0.05404495 
## Run 381 stress 0.08214347 
## Run 382 stress 0.1041305 
## Run 383 stress 0.08269649 
## Run 384 stress 0.0826964 
## Run 385 stress 0.0902478 
## Run 386 stress 0.09097332 
## Run 387 stress 0.09149136 
## Run 388 stress 0.08126269 
## ... Procrustes: rmse 0.01028997  max resid 0.03729541 
## Run 389 stress 0.0810609 
## ... New best solution
## ... Procrustes: rmse 2.952754e-05  max resid 9.151892e-05 
## ... Similar to previous best
## Run 390 stress 0.08986264 
## Run 391 stress 0.09443248 
## Run 392 stress 0.0815543 
## ... Procrustes: rmse 0.01792775  max resid 0.05391432 
## Run 393 stress 0.08126285 
## ... Procrustes: rmse 0.01030343  max resid 0.03733105 
## Run 394 stress 0.08214347 
## Run 395 stress 0.08106096 
## ... Procrustes: rmse 8.166197e-05  max resid 0.0002777048 
## ... Similar to previous best
## Run 396 stress 0.08155445 
## ... Procrustes: rmse 0.01793833  max resid 0.05407845 
## Run 397 stress 0.08214347 
## Run 398 stress 0.09128258 
## Run 399 stress 0.09097327 
## Run 400 stress 0.08986246 
## Run 401 stress 0.08156448 
## Run 402 stress 0.08155433 
## ... Procrustes: rmse 0.01791378  max resid 0.05383079 
## Run 403 stress 0.09443267 
## Run 404 stress 0.08156455 
## Run 405 stress 0.08156447 
## Run 406 stress 0.08106094 
## ... Procrustes: rmse 3.504736e-05  max resid 9.544613e-05 
## ... Similar to previous best
## Run 407 stress 0.08152776 
## ... Procrustes: rmse 0.01396806  max resid 0.05233624 
## Run 408 stress 0.08156452 
## Run 409 stress 0.1012499 
## Run 410 stress 0.09118058 
## Run 411 stress 0.08156446 
## Run 412 stress 0.08126279 
## ... Procrustes: rmse 0.01030144  max resid 0.03732623 
## Run 413 stress 0.08106094 
## ... Procrustes: rmse 9.984225e-05  max resid 0.000341018 
## ... Similar to previous best
## Run 414 stress 0.08126274 
## ... Procrustes: rmse 0.01029778  max resid 0.03731569 
## Run 415 stress 0.0898624 
## Run 416 stress 0.1056581 
## Run 417 stress 0.0909733 
## Run 418 stress 0.08156446 
## Run 419 stress 0.08155436 
## ... Procrustes: rmse 0.01791591  max resid 0.05380187 
## Run 420 stress 0.09024779 
## Run 421 stress 0.08106108 
## ... Procrustes: rmse 0.0001973767  max resid 0.0006817164 
## ... Similar to previous best
## Run 422 stress 0.08156446 
## Run 423 stress 0.0909733 
## Run 424 stress 0.08986267 
## Run 425 stress 0.08986239 
## Run 426 stress 0.08152767 
## ... Procrustes: rmse 0.0140392  max resid 0.05272401 
## Run 427 stress 0.09097327 
## Run 428 stress 0.08126278 
## ... Procrustes: rmse 0.0103  max resid 0.03732142 
## Run 429 stress 0.1048615 
## Run 430 stress 0.08156448 
## Run 431 stress 0.09149152 
## Run 432 stress 0.08155444 
## ... Procrustes: rmse 0.01794083  max resid 0.05408368 
## Run 433 stress 0.08156449 
## Run 434 stress 0.08155429 
## ... Procrustes: rmse 0.01793787  max resid 0.0539612 
## Run 435 stress 0.1078431 
## Run 436 stress 0.08986243 
## Run 437 stress 0.08156452 
## Run 438 stress 0.09031452 
## Run 439 stress 0.08106093 
## ... Procrustes: rmse 7.245395e-05  max resid 0.0002447516 
## ... Similar to previous best
## Run 440 stress 0.09079871 
## Run 441 stress 0.09079867 
## Run 442 stress 0.08269665 
## Run 443 stress 0.08155429 
## ... Procrustes: rmse 0.01792772  max resid 0.05395042 
## Run 444 stress 0.09443247 
## Run 445 stress 0.0812627 
## ... Procrustes: rmse 0.01028204  max resid 0.03726233 
## Run 446 stress 0.08152789 
## ... Procrustes: rmse 0.01407656  max resid 0.05291326 
## Run 447 stress 0.08269664 
## Run 448 stress 0.0909733 
## Run 449 stress 0.09085944 
## Run 450 stress 0.08152783 
## ... Procrustes: rmse 0.01396606  max resid 0.05231837 
## Run 451 stress 0.08106091 
## ... Procrustes: rmse 4.816931e-05  max resid 0.000168182 
## ... Similar to previous best
## Run 452 stress 0.1006559 
## Run 453 stress 0.08156448 
## Run 454 stress 0.08214345 
## Run 455 stress 0.0903146 
## Run 456 stress 0.09131338 
## Run 457 stress 0.08214347 
## Run 458 stress 0.08214345 
## Run 459 stress 0.08156451 
## Run 460 stress 0.08152773 
## ... Procrustes: rmse 0.01404972  max resid 0.05278018 
## Run 461 stress 0.08152772 
## ... Procrustes: rmse 0.01405034  max resid 0.05278255 
## Run 462 stress 0.0815543 
## ... Procrustes: rmse 0.01791694  max resid 0.05384081 
## Run 463 stress 0.09031464 
## Run 464 stress 0.08152776 
## ... Procrustes: rmse 0.01399089  max resid 0.05245807 
## Run 465 stress 0.08106092 
## ... Procrustes: rmse 6.004325e-05  max resid 0.0002088177 
## ... Similar to previous best
## Run 466 stress 0.09085952 
## Run 467 stress 0.08976401 
## Run 468 stress 0.08106094 
## ... Procrustes: rmse 8.589426e-05  max resid 0.0002910515 
## ... Similar to previous best
## Run 469 stress 0.08156446 
## Run 470 stress 0.08156448 
## Run 471 stress 0.09128266 
## Run 472 stress 0.08156451 
## Run 473 stress 0.08156446 
## Run 474 stress 0.09085948 
## Run 475 stress 0.09024779 
## Run 476 stress 0.08156447 
## Run 477 stress 0.08156446 
## Run 478 stress 0.0923238 
## Run 479 stress 0.08269646 
## Run 480 stress 0.08156451 
## Run 481 stress 0.08156446 
## Run 482 stress 0.08156454 
## Run 483 stress 0.09031452 
## Run 484 stress 0.09432768 
## Run 485 stress 0.1041613 
## Run 486 stress 0.1021548 
## Run 487 stress 0.08155446 
## ... Procrustes: rmse 0.01794037  max resid 0.05408873 
## Run 488 stress 0.08152769 
## ... Procrustes: rmse 0.0140405  max resid 0.05273236 
## Run 489 stress 0.08269649 
## Run 490 stress 0.1003811 
## Run 491 stress 0.09149144 
## Run 492 stress 0.09443213 
## Run 493 stress 0.08155428 
## ... Procrustes: rmse 0.01792497  max resid 0.05391868 
## Run 494 stress 0.0815645 
## Run 495 stress 0.09024781 
## Run 496 stress 0.08155444 
## ... Procrustes: rmse 0.01795402  max resid 0.05415866 
## Run 497 stress 0.08152782 
## ... Procrustes: rmse 0.0140682  max resid 0.05287163 
## Run 498 stress 0.08106093 
## ... Procrustes: rmse 8.744304e-05  max resid 0.0002684966 
## ... Similar to previous best
## Run 499 stress 0.105532 
## Run 500 stress 0.09085944 
## *** Best solution repeated 10 times
# Mixed and stratified lakes
pdbms_NMDS <- metaMDS(pdbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.0483367 
## Run 1 stress 0.05991814 
## Run 2 stress 0.05849517 
## Run 3 stress 0.05991814 
## Run 4 stress 0.04833679 
## ... Procrustes: rmse 0.0001232015  max resid 0.0002019661 
## ... Similar to previous best
## Run 5 stress 0.06236538 
## Run 6 stress 0.06086881 
## Run 7 stress 0.04833671 
## ... Procrustes: rmse 6.582133e-05  max resid 0.0001087847 
## ... Similar to previous best
## Run 8 stress 0.04875018 
## ... Procrustes: rmse 0.04162559  max resid 0.1397899 
## Run 9 stress 0.04833671 
## ... Procrustes: rmse 2.912563e-05  max resid 4.171814e-05 
## ... Similar to previous best
## Run 10 stress 0.05992871 
## Run 11 stress 0.05849515 
## Run 12 stress 0.0593847 
## Run 13 stress 0.06758829 
## Run 14 stress 0.06036745 
## Run 15 stress 0.05431629 
## Run 16 stress 0.04875025 
## ... Procrustes: rmse 0.04151772  max resid 0.1394626 
## Run 17 stress 0.0662233 
## Run 18 stress 0.05116424 
## Run 19 stress 0.04833672 
## ... Procrustes: rmse 4.861201e-05  max resid 7.192009e-05 
## ... Similar to previous best
## Run 20 stress 0.05938476 
## Run 21 stress 0.05431625 
## Run 22 stress 0.05938473 
## Run 23 stress 0.05992879 
## Run 24 stress 0.05991816 
## Run 25 stress 0.05849516 
## Run 26 stress 0.05863405 
## Run 27 stress 0.06036743 
## Run 28 stress 0.07504544 
## Run 29 stress 0.05938469 
## Run 30 stress 0.06758839 
## Run 31 stress 0.06086846 
## Run 32 stress 0.07038312 
## Run 33 stress 0.0529571 
## Run 34 stress 0.05938469 
## Run 35 stress 0.06833884 
## Run 36 stress 0.06203536 
## Run 37 stress 0.05933295 
## Run 38 stress 0.04833672 
## ... Procrustes: rmse 4.817783e-05  max resid 7.141616e-05 
## ... Similar to previous best
## Run 39 stress 0.0564381 
## Run 40 stress 0.0608685 
## Run 41 stress 0.06161797 
## Run 42 stress 0.06036753 
## Run 43 stress 0.05116418 
## Run 44 stress 0.06203528 
## Run 45 stress 0.05938478 
## Run 46 stress 0.05933159 
## Run 47 stress 0.05116415 
## Run 48 stress 0.05643819 
## Run 49 stress 0.04833671 
## ... Procrustes: rmse 4.060474e-05  max resid 5.979774e-05 
## ... Similar to previous best
## Run 50 stress 0.04833683 
## ... Procrustes: rmse 0.0001563368  max resid 0.0002571755 
## ... Similar to previous best
## Run 51 stress 0.0623653 
## Run 52 stress 0.05849519 
## Run 53 stress 0.05295713 
## Run 54 stress 0.05933307 
## Run 55 stress 0.06203526 
## Run 56 stress 0.05748891 
## Run 57 stress 0.04875021 
## ... Procrustes: rmse 0.04164871  max resid 0.1398609 
## Run 58 stress 0.04875022 
## ... Procrustes: rmse 0.04153534  max resid 0.1395162 
## Run 59 stress 0.05380038 
## Run 60 stress 0.04833671 
## ... Procrustes: rmse 2.865054e-05  max resid 4.347614e-05 
## ... Similar to previous best
## Run 61 stress 0.07292777 
## Run 62 stress 0.06236543 
## Run 63 stress 0.04833672 
## ... Procrustes: rmse 5.055511e-05  max resid 7.460028e-05 
## ... Similar to previous best
## Run 64 stress 0.06814643 
## Run 65 stress 0.05935356 
## Run 66 stress 0.05933127 
## Run 67 stress 0.05933157 
## Run 68 stress 0.05849524 
## Run 69 stress 0.06939827 
## Run 70 stress 0.04833676 
## ... Procrustes: rmse 0.0001286348  max resid 0.0002180247 
## ... Similar to previous best
## Run 71 stress 0.0483367 
## ... Procrustes: rmse 1.859779e-05  max resid 3.389636e-05 
## ... Similar to previous best
## Run 72 stress 0.05380036 
## Run 73 stress 0.06203526 
## Run 74 stress 0.05933306 
## Run 75 stress 0.06041478 
## Run 76 stress 0.0538004 
## Run 77 stress 0.05849526 
## Run 78 stress 0.05748885 
## Run 79 stress 0.04833671 
## ... Procrustes: rmse 3.793115e-05  max resid 5.630118e-05 
## ... Similar to previous best
## Run 80 stress 0.06939828 
## Run 81 stress 0.04875023 
## ... Procrustes: rmse 0.0415271  max resid 0.139491 
## Run 82 stress 0.06617401 
## Run 83 stress 0.0593847 
## Run 84 stress 0.07206107 
## Run 85 stress 0.059333 
## Run 86 stress 0.0483367 
## ... New best solution
## ... Procrustes: rmse 8.000854e-06  max resid 1.512167e-05 
## ... Similar to previous best
## Run 87 stress 0.04833677 
## ... Procrustes: rmse 0.0001301415  max resid 0.0002242138 
## ... Similar to previous best
## Run 88 stress 0.06593278 
## Run 89 stress 0.06161806 
## Run 90 stress 0.06786008 
## Run 91 stress 0.0574889 
## Run 92 stress 0.06624134 
## Run 93 stress 0.0487502 
## ... Procrustes: rmse 0.0416078  max resid 0.1397352 
## Run 94 stress 0.06036744 
## Run 95 stress 0.04833677 
## ... Procrustes: rmse 0.000121002  max resid 0.0002273582 
## ... Similar to previous best
## Run 96 stress 0.07020888 
## Run 97 stress 0.05295711 
## Run 98 stress 0.04875017 
## ... Procrustes: rmse 0.04159223  max resid 0.1396885 
## Run 99 stress 0.05992867 
## Run 100 stress 0.05295712 
## Run 101 stress 0.05849521 
## Run 102 stress 0.0483367 
## ... Procrustes: rmse 2.632356e-05  max resid 4.214278e-05 
## ... Similar to previous best
## Run 103 stress 0.05938469 
## Run 104 stress 0.06092386 
## Run 105 stress 0.06092386 
## Run 106 stress 0.0609239 
## Run 107 stress 0.04875023 
## ... Procrustes: rmse 0.04152341  max resid 0.1394787 
## Run 108 stress 0.06614136 
## Run 109 stress 0.06036754 
## Run 110 stress 0.06086859 
## Run 111 stress 0.06092391 
## Run 112 stress 0.04833672 
## ... Procrustes: rmse 4.150508e-05  max resid 6.896386e-05 
## ... Similar to previous best
## Run 113 stress 0.05431632 
## Run 114 stress 0.0529571 
## Run 115 stress 0.05933294 
## Run 116 stress 0.05295716 
## Run 117 stress 0.05863407 
## Run 118 stress 0.05992866 
## Run 119 stress 0.05380047 
## Run 120 stress 0.05116416 
## Run 121 stress 0.0661414 
## Run 122 stress 0.05748879 
## Run 123 stress 0.07277538 
## Run 124 stress 0.0529572 
## Run 125 stress 0.0584952 
## Run 126 stress 0.05748883 
## Run 127 stress 0.05431633 
## Run 128 stress 0.05992866 
## Run 129 stress 0.0483367 
## ... Procrustes: rmse 1.118378e-05  max resid 2.053039e-05 
## ... Similar to previous best
## Run 130 stress 0.05643812 
## Run 131 stress 0.06086857 
## Run 132 stress 0.0483367 
## ... Procrustes: rmse 3.091357e-05  max resid 4.654194e-05 
## ... Similar to previous best
## Run 133 stress 0.06599285 
## Run 134 stress 0.0584953 
## Run 135 stress 0.05346104 
## Run 136 stress 0.05863409 
## Run 137 stress 0.05295713 
## Run 138 stress 0.05748887 
## Run 139 stress 0.04875023 
## ... Procrustes: rmse 0.04152847  max resid 0.1394946 
## Run 140 stress 0.06911406 
## Run 141 stress 0.05295718 
## Run 142 stress 0.05116416 
## Run 143 stress 0.05992869 
## Run 144 stress 0.05748884 
## Run 145 stress 0.06161799 
## Run 146 stress 0.06170845 
## Run 147 stress 0.06236531 
## Run 148 stress 0.04833672 
## ... Procrustes: rmse 5.54443e-05  max resid 8.136201e-05 
## ... Similar to previous best
## Run 149 stress 0.06831109 
## Run 150 stress 0.06203534 
## Run 151 stress 0.05748887 
## Run 152 stress 0.0529572 
## Run 153 stress 0.04875027 
## ... Procrustes: rmse 0.04150974  max resid 0.139437 
## Run 154 stress 0.05748881 
## Run 155 stress 0.05431626 
## Run 156 stress 0.05938472 
## Run 157 stress 0.04875018 
## ... Procrustes: rmse 0.04155507  max resid 0.1395756 
## Run 158 stress 0.05295719 
## Run 159 stress 0.04875024 
## ... Procrustes: rmse 0.04152576  max resid 0.1394847 
## Run 160 stress 0.0483367 
## ... Procrustes: rmse 2.168602e-05  max resid 3.376134e-05 
## ... Similar to previous best
## Run 161 stress 0.05295713 
## Run 162 stress 0.07117138 
## Run 163 stress 0.04833674 
## ... Procrustes: rmse 9.004072e-05  max resid 0.0001480343 
## ... Similar to previous best
## Run 164 stress 0.05748885 
## Run 165 stress 0.04875021 
## ... Procrustes: rmse 0.04164724  max resid 0.1398554 
## Run 166 stress 0.05933167 
## Run 167 stress 0.06972016 
## Run 168 stress 0.06170845 
## Run 169 stress 0.05748879 
## Run 170 stress 0.04833672 
## ... Procrustes: rmse 5.875122e-05  max resid 8.674094e-05 
## ... Similar to previous best
## Run 171 stress 0.04875018 
## ... Procrustes: rmse 0.04162478  max resid 0.1397871 
## Run 172 stress 0.06041486 
## Run 173 stress 0.0604148 
## Run 174 stress 0.05938469 
## Run 175 stress 0.05295715 
## Run 176 stress 0.04875019 
## ... Procrustes: rmse 0.04155332  max resid 0.1395698 
## Run 177 stress 0.06911411 
## Run 178 stress 0.06036756 
## Run 179 stress 0.06614131 
## Run 180 stress 0.05863399 
## Run 181 stress 0.05748878 
## Run 182 stress 0.04875032 
## ... Procrustes: rmse 0.04168963  max resid 0.1399828 
## Run 183 stress 0.05116422 
## Run 184 stress 0.04875016 
## ... Procrustes: rmse 0.04157687  max resid 0.1396418 
## Run 185 stress 0.06161797 
## Run 186 stress 0.05380046 
## Run 187 stress 0.05849517 
## Run 188 stress 0.06850994 
## Run 189 stress 0.06036746 
## Run 190 stress 0.06161793 
## Run 191 stress 0.0483367 
## ... Procrustes: rmse 9.934626e-06  max resid 1.597256e-05 
## ... Similar to previous best
## Run 192 stress 0.05992876 
## Run 193 stress 0.0659331 
## Run 194 stress 0.05295716 
## Run 195 stress 0.05938469 
## Run 196 stress 0.04833672 
## ... Procrustes: rmse 7.90561e-05  max resid 0.0001321859 
## ... Similar to previous best
## Run 197 stress 0.06041479 
## Run 198 stress 0.04875025 
## ... Procrustes: rmse 0.04151617  max resid 0.1394568 
## Run 199 stress 0.04875021 
## ... Procrustes: rmse 0.04164156  max resid 0.1398384 
## Run 200 stress 0.04833672 
## ... Procrustes: rmse 5.509653e-05  max resid 8.126176e-05 
## ... Similar to previous best
## Run 201 stress 0.06161816 
## Run 202 stress 0.06236541 
## Run 203 stress 0.06092392 
## Run 204 stress 0.05431628 
## Run 205 stress 0.07114121 
## Run 206 stress 0.06851009 
## Run 207 stress 0.05849523 
## Run 208 stress 0.05295723 
## Run 209 stress 0.05295721 
## Run 210 stress 0.04875022 
## ... Procrustes: rmse 0.04154863  max resid 0.139555 
## Run 211 stress 0.05863398 
## Run 212 stress 0.06086873 
## Run 213 stress 0.3501116 
## Run 214 stress 0.04833671 
## ... Procrustes: rmse 4.799942e-05  max resid 7.071672e-05 
## ... Similar to previous best
## Run 215 stress 0.06092386 
## Run 216 stress 0.06850997 
## Run 217 stress 0.05992864 
## Run 218 stress 0.06036752 
## Run 219 stress 0.04833671 
## ... Procrustes: rmse 6.227252e-05  max resid 0.0001031799 
## ... Similar to previous best
## Run 220 stress 0.04833671 
## ... Procrustes: rmse 4.411906e-05  max resid 7.136166e-05 
## ... Similar to previous best
## Run 221 stress 0.05933202 
## Run 222 stress 0.05346083 
## Run 223 stress 0.061618 
## Run 224 stress 0.06203524 
## Run 225 stress 0.06911414 
## Run 226 stress 0.05295711 
## Run 227 stress 0.05933297 
## Run 228 stress 0.06161789 
## Run 229 stress 0.0593847 
## Run 230 stress 0.04833671 
## ... Procrustes: rmse 3.345726e-05  max resid 4.940493e-05 
## ... Similar to previous best
## Run 231 stress 0.04833672 
## ... Procrustes: rmse 7.002024e-05  max resid 0.0001183931 
## ... Similar to previous best
## Run 232 stress 0.05992868 
## Run 233 stress 0.04875017 
## ... Procrustes: rmse 0.0416108  max resid 0.1397446 
## Run 234 stress 0.05346092 
## Run 235 stress 0.05380033 
## Run 236 stress 0.06203521 
## Run 237 stress 0.0574888 
## Run 238 stress 0.05933132 
## Run 239 stress 0.06622332 
## Run 240 stress 0.04875022 
## ... Procrustes: rmse 0.04153236  max resid 0.1395067 
## Run 241 stress 0.05748877 
## Run 242 stress 0.0593847 
## Run 243 stress 0.0534608 
## Run 244 stress 0.06317336 
## Run 245 stress 0.05933182 
## Run 246 stress 0.05748882 
## Run 247 stress 0.04833671 
## ... Procrustes: rmse 4.95095e-05  max resid 8.652935e-05 
## ... Similar to previous best
## Run 248 stress 0.04875023 
## ... Procrustes: rmse 0.0416517  max resid 0.1398684 
## Run 249 stress 0.05431626 
## Run 250 stress 0.04833674 
## ... Procrustes: rmse 0.0001045268  max resid 0.0001785565 
## ... Similar to previous best
## Run 251 stress 0.06036753 
## Run 252 stress 0.06613486 
## Run 253 stress 0.06911401 
## Run 254 stress 0.0574888 
## Run 255 stress 0.05863395 
## Run 256 stress 0.04833676 
## ... Procrustes: rmse 0.0001176368  max resid 0.0001715438 
## ... Similar to previous best
## Run 257 stress 0.04875022 
## ... Procrustes: rmse 0.04152629  max resid 0.139488 
## Run 258 stress 0.07206074 
## Run 259 stress 0.05992865 
## Run 260 stress 0.06971987 
## Run 261 stress 0.05938475 
## Run 262 stress 0.05991819 
## Run 263 stress 0.04875019 
## ... Procrustes: rmse 0.04156027  max resid 0.1395918 
## Run 264 stress 0.0511642 
## Run 265 stress 0.05863395 
## Run 266 stress 0.06833865 
## Run 267 stress 0.04875024 
## ... Procrustes: rmse 0.04154855  max resid 0.1395522 
## Run 268 stress 0.06614162 
## Run 269 stress 0.06831101 
## Run 270 stress 0.04833677 
## ... Procrustes: rmse 0.0001341402  max resid 0.0002330986 
## ... Similar to previous best
## Run 271 stress 0.06036751 
## Run 272 stress 0.04833672 
## ... Procrustes: rmse 5.250015e-05  max resid 7.824505e-05 
## ... Similar to previous best
## Run 273 stress 0.07752598 
## Run 274 stress 0.05346079 
## Run 275 stress 0.05431624 
## Run 276 stress 0.04833675 
## ... Procrustes: rmse 9.547153e-05  max resid 0.0001568345 
## ... Similar to previous best
## Run 277 stress 0.05991813 
## Run 278 stress 0.0487502 
## ... Procrustes: rmse 0.04154444  max resid 0.1395427 
## Run 279 stress 0.06092387 
## Run 280 stress 0.05933296 
## Run 281 stress 0.0487503 
## ... Procrustes: rmse 0.04149621  max resid 0.1393962 
## Run 282 stress 0.06041497 
## Run 283 stress 0.04875023 
## ... Procrustes: rmse 0.04154333  max resid 0.1395388 
## Run 284 stress 0.04833677 
## ... Procrustes: rmse 0.0001168364  max resid 0.0001925159 
## ... Similar to previous best
## Run 285 stress 0.06036745 
## Run 286 stress 0.06036749 
## Run 287 stress 0.04833671 
## ... Procrustes: rmse 5.005283e-05  max resid 7.406056e-05 
## ... Similar to previous best
## Run 288 stress 0.06203528 
## Run 289 stress 0.04875025 
## ... Procrustes: rmse 0.04166045  max resid 0.1398951 
## Run 290 stress 0.04875024 
## ... Procrustes: rmse 0.04151666  max resid 0.1394586 
## Run 291 stress 0.06317314 
## Run 292 stress 0.05116421 
## Run 293 stress 0.05380058 
## Run 294 stress 0.0483367 
## ... Procrustes: rmse 2.031026e-05  max resid 3.127263e-05 
## ... Similar to previous best
## Run 295 stress 0.04875017 
## ... Procrustes: rmse 0.04161059  max resid 0.1397442 
## Run 296 stress 0.0604148 
## Run 297 stress 0.05933313 
## Run 298 stress 0.06236532 
## Run 299 stress 0.05116418 
## Run 300 stress 0.05933302 
## Run 301 stress 0.0543163 
## Run 302 stress 0.061618 
## Run 303 stress 0.05849515 
## Run 304 stress 0.06622339 
## Run 305 stress 0.04833672 
## ... Procrustes: rmse 7.476064e-05  max resid 0.0001154703 
## ... Similar to previous best
## Run 306 stress 0.06972019 
## Run 307 stress 0.04833675 
## ... Procrustes: rmse 0.0001032008  max resid 0.0001654722 
## ... Similar to previous best
## Run 308 stress 0.05935226 
## Run 309 stress 0.04833671 
## ... Procrustes: rmse 3.883736e-05  max resid 7.104828e-05 
## ... Similar to previous best
## Run 310 stress 0.06622333 
## Run 311 stress 0.05295714 
## Run 312 stress 0.06624126 
## Run 313 stress 0.04833671 
## ... Procrustes: rmse 3.40053e-05  max resid 5.149287e-05 
## ... Similar to previous best
## Run 314 stress 0.04833671 
## ... Procrustes: rmse 4.428207e-05  max resid 6.751832e-05 
## ... Similar to previous best
## Run 315 stress 0.04833678 
## ... Procrustes: rmse 0.0001222584  max resid 0.0002012976 
## ... Similar to previous best
## Run 316 stress 0.04833672 
## ... Procrustes: rmse 6.971426e-05  max resid 0.0001158102 
## ... Similar to previous best
## Run 317 stress 0.06086857 
## Run 318 stress 0.05849526 
## Run 319 stress 0.05935408 
## Run 320 stress 0.04875023 
## ... Procrustes: rmse 0.04153439  max resid 0.1395137 
## Run 321 stress 0.05346081 
## Run 322 stress 0.06614156 
## Run 323 stress 0.04875021 
## ... Procrustes: rmse 0.04153679  max resid 0.1395195 
## Run 324 stress 0.04875021 
## ... Procrustes: rmse 0.04153506  max resid 0.1395148 
## Run 325 stress 0.0487502 
## ... Procrustes: rmse 0.04154108  max resid 0.1395331 
## Run 326 stress 0.05431636 
## Run 327 stress 0.05933307 
## Run 328 stress 0.05380039 
## Run 329 stress 0.04875028 
## ... Procrustes: rmse 0.04150125  max resid 0.1394116 
## Run 330 stress 0.05380038 
## Run 331 stress 0.05116417 
## Run 332 stress 0.05748881 
## Run 333 stress 0.3546478 
## Run 334 stress 0.06786018 
## Run 335 stress 0.04875025 
## ... Procrustes: rmse 0.04158041  max resid 0.139652 
## Run 336 stress 0.06850972 
## Run 337 stress 0.05863396 
## Run 338 stress 0.05295717 
## Run 339 stress 0.04875019 
## ... Procrustes: rmse 0.04162719  max resid 0.139795 
## Run 340 stress 0.05933301 
## Run 341 stress 0.04875017 
## ... Procrustes: rmse 0.04157285  max resid 0.1396291 
## Run 342 stress 0.05295711 
## Run 343 stress 0.05992864 
## Run 344 stress 0.0483367 
## ... Procrustes: rmse 2.173992e-05  max resid 3.706221e-05 
## ... Similar to previous best
## Run 345 stress 0.05863392 
## Run 346 stress 0.05992871 
## Run 347 stress 0.05933294 
## Run 348 stress 0.04833671 
## ... Procrustes: rmse 5.419325e-05  max resid 9.637691e-05 
## ... Similar to previous best
## Run 349 stress 0.0483367 
## ... Procrustes: rmse 2.497166e-05  max resid 3.993708e-05 
## ... Similar to previous best
## Run 350 stress 0.06086866 
## Run 351 stress 0.04875023 
## ... Procrustes: rmse 0.04153914  max resid 0.1395262 
## Run 352 stress 0.05295712 
## Run 353 stress 0.06851021 
## Run 354 stress 0.0483367 
## ... Procrustes: rmse 2.637384e-05  max resid 4.339583e-05 
## ... Similar to previous best
## Run 355 stress 0.06758832 
## Run 356 stress 0.06161816 
## Run 357 stress 0.06878409 
## Run 358 stress 0.05933136 
## Run 359 stress 0.07023454 
## Run 360 stress 0.05863407 
## Run 361 stress 0.05295712 
## Run 362 stress 0.0483367 
## ... Procrustes: rmse 1.116473e-05  max resid 2.057891e-05 
## ... Similar to previous best
## Run 363 stress 0.06170845 
## Run 364 stress 0.04875023 
## ... Procrustes: rmse 0.0416583  max resid 0.1398886 
## Run 365 stress 0.04875017 
## ... Procrustes: rmse 0.04156409  max resid 0.1396027 
## Run 366 stress 0.04875021 
## ... Procrustes: rmse 0.04153395  max resid 0.1395115 
## Run 367 stress 0.05991817 
## Run 368 stress 0.06092387 
## Run 369 stress 0.05346099 
## Run 370 stress 0.05643831 
## Run 371 stress 0.05748877 
## Run 372 stress 0.06036753 
## Run 373 stress 0.04833672 
## ... Procrustes: rmse 7.687987e-05  max resid 0.0001159333 
## ... Similar to previous best
## Run 374 stress 0.05380038 
## Run 375 stress 0.06161793 
## Run 376 stress 0.05116416 
## Run 377 stress 0.05849515 
## Run 378 stress 0.06092391 
## Run 379 stress 0.05295712 
## Run 380 stress 0.05380069 
## Run 381 stress 0.04875026 
## ... Procrustes: rmse 0.04151114  max resid 0.139442 
## Run 382 stress 0.06723851 
## Run 383 stress 0.058634 
## Run 384 stress 0.05748878 
## Run 385 stress 0.05346094 
## Run 386 stress 0.05295717 
## Run 387 stress 0.05643816 
## Run 388 stress 0.05938474 
## Run 389 stress 0.06758823 
## Run 390 stress 0.0593847 
## Run 391 stress 0.059333 
## Run 392 stress 0.06614144 
## Run 393 stress 0.05380036 
## Run 394 stress 0.0483367 
## ... Procrustes: rmse 1.494905e-05  max resid 2.294416e-05 
## ... Similar to previous best
## Run 395 stress 0.0593317 
## Run 396 stress 0.05295715 
## Run 397 stress 0.0543163 
## Run 398 stress 0.0487502 
## ... Procrustes: rmse 0.04154213  max resid 0.139536 
## Run 399 stress 0.05992867 
## Run 400 stress 0.0593316 
## Run 401 stress 0.0487502 
## ... Procrustes: rmse 0.04163701  max resid 0.1398245 
## Run 402 stress 0.04875024 
## ... Procrustes: rmse 0.0416579  max resid 0.139888 
## Run 403 stress 0.05431625 
## Run 404 stress 0.05748882 
## Run 405 stress 0.05849525 
## Run 406 stress 0.0483367 
## ... Procrustes: rmse 2.355262e-05  max resid 3.628361e-05 
## ... Similar to previous best
## Run 407 stress 0.06236538 
## Run 408 stress 0.07504545 
## Run 409 stress 0.0620353 
## Run 410 stress 0.0593848 
## Run 411 stress 0.05380068 
## Run 412 stress 0.05431628 
## Run 413 stress 0.069114 
## Run 414 stress 0.05380039 
## Run 415 stress 0.04833676 
## ... Procrustes: rmse 0.0001214984  max resid 0.0002001782 
## ... Similar to previous best
## Run 416 stress 0.0593847 
## Run 417 stress 0.06911375 
## Run 418 stress 0.04833671 
## ... Procrustes: rmse 5.826127e-05  max resid 9.581048e-05 
## ... Similar to previous best
## Run 419 stress 0.0483367 
## ... New best solution
## ... Procrustes: rmse 1.06388e-05  max resid 2.125435e-05 
## ... Similar to previous best
## Run 420 stress 0.05863393 
## Run 421 stress 0.04875026 
## ... Procrustes: rmse 0.04151065  max resid 0.1394397 
## Run 422 stress 0.05346093 
## Run 423 stress 0.04875028 
## ... Procrustes: rmse 0.04149623  max resid 0.1393963 
## Run 424 stress 0.05991814 
## Run 425 stress 0.06161805 
## Run 426 stress 0.06203521 
## Run 427 stress 0.06723855 
## Run 428 stress 0.06203527 
## Run 429 stress 0.07277499 
## Run 430 stress 0.04833676 
## ... Procrustes: rmse 0.0001119468  max resid 0.0001804534 
## ... Similar to previous best
## Run 431 stress 0.05380034 
## Run 432 stress 0.05992869 
## Run 433 stress 0.06041502 
## Run 434 stress 0.06614161 
## Run 435 stress 0.05849517 
## Run 436 stress 0.04833676 
## ... Procrustes: rmse 0.0001094751  max resid 0.0001863402 
## ... Similar to previous best
## Run 437 stress 0.04875021 
## ... Procrustes: rmse 0.04156367  max resid 0.1396032 
## Run 438 stress 0.04833679 
## ... Procrustes: rmse 0.0001367291  max resid 0.0002383103 
## ... Similar to previous best
## Run 439 stress 0.05748886 
## Run 440 stress 0.06161803 
## Run 441 stress 0.06036749 
## Run 442 stress 0.05295712 
## Run 443 stress 0.05992871 
## Run 444 stress 0.05863398 
## Run 445 stress 0.06092387 
## Run 446 stress 0.06161811 
## Run 447 stress 0.0483367 
## ... Procrustes: rmse 1.368038e-05  max resid 2.708939e-05 
## ... Similar to previous best
## Run 448 stress 0.05346091 
## Run 449 stress 0.05863413 
## Run 450 stress 0.05938471 
## Run 451 stress 0.0483367 
## ... Procrustes: rmse 2.32062e-05  max resid 4.419737e-05 
## ... Similar to previous best
## Run 452 stress 0.0483367 
## ... Procrustes: rmse 2.486804e-05  max resid 4.542681e-05 
## ... Similar to previous best
## Run 453 stress 0.05295711 
## Run 454 stress 0.06086865 
## Run 455 stress 0.06851014 
## Run 456 stress 0.04875021 
## ... Procrustes: rmse 0.04152826  max resid 0.1394938 
## Run 457 stress 0.06831098 
## Run 458 stress 0.06203523 
## Run 459 stress 0.04833672 
## ... Procrustes: rmse 7.240129e-05  max resid 0.0001192429 
## ... Similar to previous best
## Run 460 stress 0.04875024 
## ... Procrustes: rmse 0.04152466  max resid 0.1394825 
## Run 461 stress 0.05938477 
## Run 462 stress 0.04875019 
## ... Procrustes: rmse 0.04153724  max resid 0.1395214 
## Run 463 stress 0.06814641 
## Run 464 stress 0.0608687 
## Run 465 stress 0.05380048 
## Run 466 stress 0.04875019 
## ... Procrustes: rmse 0.04155278  max resid 0.1395699 
## Run 467 stress 0.0483367 
## ... Procrustes: rmse 2.633129e-05  max resid 5.037705e-05 
## ... Similar to previous best
## Run 468 stress 0.05643806 
## Run 469 stress 0.07061516 
## Run 470 stress 0.0586341 
## Run 471 stress 0.05748882 
## Run 472 stress 0.05748885 
## Run 473 stress 0.06614154 
## Run 474 stress 0.05849523 
## Run 475 stress 0.05935331 
## Run 476 stress 0.05748891 
## Run 477 stress 0.04875022 
## ... Procrustes: rmse 0.04152365  max resid 0.1394798 
## Run 478 stress 0.05863397 
## Run 479 stress 0.05992868 
## Run 480 stress 0.07206077 
## Run 481 stress 0.04833676 
## ... Procrustes: rmse 0.0001104941  max resid 0.0001864571 
## ... Similar to previous best
## Run 482 stress 0.06317338 
## Run 483 stress 0.06041487 
## Run 484 stress 0.04875021 
## ... Procrustes: rmse 0.04153372  max resid 0.1395095 
## Run 485 stress 0.05643821 
## Run 486 stress 0.04875017 
## ... Procrustes: rmse 0.04156378  max resid 0.139602 
## Run 487 stress 0.05933318 
## Run 488 stress 0.06036746 
## Run 489 stress 0.053461 
## Run 490 stress 0.05643803 
## Run 491 stress 0.06911389 
## Run 492 stress 0.04875019 
## ... Procrustes: rmse 0.04154568  max resid 0.1395468 
## Run 493 stress 0.05992872 
## Run 494 stress 0.06092386 
## Run 495 stress 0.07023467 
## Run 496 stress 0.0483367 
## ... Procrustes: rmse 3.323284e-05  max resid 5.786625e-05 
## ... Similar to previous best
## Run 497 stress 0.04875016 
## ... Procrustes: rmse 0.04157699  max resid 0.139642 
## Run 498 stress 0.04833676 
## ... Procrustes: rmse 0.0001137463  max resid 0.0002110728 
## ... Similar to previous best
## Run 499 stress 0.0593313 
## Run 500 stress 0.04833675 
## ... Procrustes: rmse 0.0001025686  max resid 0.000163618 
## ... Similar to previous best
## *** Best solution repeated 13 times
# Ocean sites and mixed lakes
pdbom_NMDS <- metaMDS(pdbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.09428658 
## Run 1 stress 0.1279813 
## Run 2 stress 0.09428658 
## ... New best solution
## ... Procrustes: rmse 5.34521e-06  max resid 9.572818e-06 
## ... Similar to previous best
## Run 3 stress 0.09428658 
## ... Procrustes: rmse 4.323313e-06  max resid 8.709788e-06 
## ... Similar to previous best
## Run 4 stress 0.1279813 
## Run 5 stress 0.123562 
## Run 6 stress 0.1279813 
## Run 7 stress 0.123562 
## Run 8 stress 0.09428658 
## ... Procrustes: rmse 7.934404e-07  max resid 1.750323e-06 
## ... Similar to previous best
## Run 9 stress 0.09428658 
## ... New best solution
## ... Procrustes: rmse 2.836314e-06  max resid 5.506259e-06 
## ... Similar to previous best
## Run 10 stress 0.1279813 
## Run 11 stress 0.09428658 
## ... Procrustes: rmse 2.596761e-06  max resid 4.946323e-06 
## ... Similar to previous best
## Run 12 stress 0.123562 
## Run 13 stress 0.09428658 
## ... Procrustes: rmse 1.386868e-06  max resid 2.730783e-06 
## ... Similar to previous best
## Run 14 stress 0.09428658 
## ... Procrustes: rmse 4.601091e-06  max resid 8.718387e-06 
## ... Similar to previous best
## Run 15 stress 0.09428658 
## ... New best solution
## ... Procrustes: rmse 1.49736e-06  max resid 2.814336e-06 
## ... Similar to previous best
## Run 16 stress 0.1382001 
## Run 17 stress 0.1235621 
## Run 18 stress 0.123562 
## Run 19 stress 0.1490896 
## Run 20 stress 0.09428658 
## ... Procrustes: rmse 4.289574e-06  max resid 6.812291e-06 
## ... Similar to previous best
## Run 21 stress 0.09428658 
## ... Procrustes: rmse 2.108671e-06  max resid 3.707469e-06 
## ... Similar to previous best
## Run 22 stress 0.123562 
## Run 23 stress 0.09428658 
## ... Procrustes: rmse 3.922401e-06  max resid 6.77067e-06 
## ... Similar to previous best
## Run 24 stress 0.09428658 
## ... Procrustes: rmse 1.647293e-06  max resid 2.632561e-06 
## ... Similar to previous best
## Run 25 stress 0.1279813 
## Run 26 stress 0.09428658 
## ... Procrustes: rmse 2.1456e-06  max resid 4.842355e-06 
## ... Similar to previous best
## Run 27 stress 0.1490896 
## Run 28 stress 0.123562 
## Run 29 stress 0.1380679 
## Run 30 stress 0.09428658 
## ... Procrustes: rmse 1.132865e-06  max resid 2.17425e-06 
## ... Similar to previous best
## Run 31 stress 0.09428658 
## ... Procrustes: rmse 5.884853e-06  max resid 1.253524e-05 
## ... Similar to previous best
## Run 32 stress 0.09428658 
## ... Procrustes: rmse 2.702668e-06  max resid 5.81869e-06 
## ... Similar to previous best
## Run 33 stress 0.123562 
## Run 34 stress 0.09428658 
## ... Procrustes: rmse 2.368737e-06  max resid 4.288622e-06 
## ... Similar to previous best
## Run 35 stress 0.123562 
## Run 36 stress 0.1279813 
## Run 37 stress 0.1279813 
## Run 38 stress 0.09428658 
## ... Procrustes: rmse 1.462015e-06  max resid 2.273083e-06 
## ... Similar to previous best
## Run 39 stress 0.1279813 
## Run 40 stress 0.1279813 
## Run 41 stress 0.123562 
## Run 42 stress 0.09428658 
## ... Procrustes: rmse 1.891621e-06  max resid 5.235194e-06 
## ... Similar to previous best
## Run 43 stress 0.09428658 
## ... Procrustes: rmse 8.297953e-07  max resid 1.649106e-06 
## ... Similar to previous best
## Run 44 stress 0.09428658 
## ... Procrustes: rmse 2.327768e-06  max resid 5.097945e-06 
## ... Similar to previous best
## Run 45 stress 0.123562 
## Run 46 stress 0.1279813 
## Run 47 stress 0.09428658 
## ... Procrustes: rmse 1.213303e-06  max resid 2.024131e-06 
## ... Similar to previous best
## Run 48 stress 0.1279813 
## Run 49 stress 0.1279813 
## Run 50 stress 0.09428658 
## ... Procrustes: rmse 1.188189e-06  max resid 2.387045e-06 
## ... Similar to previous best
## Run 51 stress 0.09428658 
## ... Procrustes: rmse 6.557032e-07  max resid 1.261992e-06 
## ... Similar to previous best
## Run 52 stress 0.123562 
## Run 53 stress 0.123562 
## Run 54 stress 0.123562 
## Run 55 stress 0.09428658 
## ... Procrustes: rmse 4.177748e-06  max resid 7.811774e-06 
## ... Similar to previous best
## Run 56 stress 0.09428658 
## ... Procrustes: rmse 1.051862e-06  max resid 1.530975e-06 
## ... Similar to previous best
## Run 57 stress 0.123562 
## Run 58 stress 0.09428658 
## ... Procrustes: rmse 7.532998e-07  max resid 1.233962e-06 
## ... Similar to previous best
## Run 59 stress 0.1279813 
## Run 60 stress 0.123562 
## Run 61 stress 0.09428658 
## ... Procrustes: rmse 8.811092e-07  max resid 1.389995e-06 
## ... Similar to previous best
## Run 62 stress 0.123562 
## Run 63 stress 0.123562 
## Run 64 stress 0.3222481 
## Run 65 stress 0.123562 
## Run 66 stress 0.09428658 
## ... Procrustes: rmse 1.313248e-06  max resid 2.682227e-06 
## ... Similar to previous best
## Run 67 stress 0.123562 
## Run 68 stress 0.1279813 
## Run 69 stress 0.09428658 
## ... Procrustes: rmse 2.762165e-06  max resid 4.336045e-06 
## ... Similar to previous best
## Run 70 stress 0.09428658 
## ... Procrustes: rmse 2.185611e-06  max resid 5.327423e-06 
## ... Similar to previous best
## Run 71 stress 0.123562 
## Run 72 stress 0.3100071 
## Run 73 stress 0.123562 
## Run 74 stress 0.1235621 
## Run 75 stress 0.123562 
## Run 76 stress 0.1279813 
## Run 77 stress 0.1279813 
## Run 78 stress 0.1279813 
## Run 79 stress 0.1235621 
## Run 80 stress 0.1235621 
## Run 81 stress 0.1279813 
## Run 82 stress 0.1279813 
## Run 83 stress 0.1279813 
## Run 84 stress 0.09428658 
## ... Procrustes: rmse 1.690811e-06  max resid 2.855544e-06 
## ... Similar to previous best
## Run 85 stress 0.1279813 
## Run 86 stress 0.09428658 
## ... Procrustes: rmse 1.868916e-06  max resid 4.856566e-06 
## ... Similar to previous best
## Run 87 stress 0.09428658 
## ... Procrustes: rmse 3.867259e-06  max resid 6.054431e-06 
## ... Similar to previous best
## Run 88 stress 0.09428658 
## ... Procrustes: rmse 4.844845e-06  max resid 8.826676e-06 
## ... Similar to previous best
## Run 89 stress 0.09428658 
## ... Procrustes: rmse 3.136582e-06  max resid 5.478433e-06 
## ... Similar to previous best
## Run 90 stress 0.1235621 
## Run 91 stress 0.09428658 
## ... Procrustes: rmse 1.716044e-06  max resid 3.115966e-06 
## ... Similar to previous best
## Run 92 stress 0.1235621 
## Run 93 stress 0.09428658 
## ... Procrustes: rmse 6.206921e-06  max resid 1.069836e-05 
## ... Similar to previous best
## Run 94 stress 0.09428658 
## ... Procrustes: rmse 9.698267e-07  max resid 1.657887e-06 
## ... Similar to previous best
## Run 95 stress 0.1279813 
## Run 96 stress 0.1279813 
## Run 97 stress 0.09428658 
## ... Procrustes: rmse 2.68903e-06  max resid 5.447326e-06 
## ... Similar to previous best
## Run 98 stress 0.09428658 
## ... Procrustes: rmse 6.168653e-06  max resid 1.122423e-05 
## ... Similar to previous best
## Run 99 stress 0.09428658 
## ... Procrustes: rmse 4.596737e-06  max resid 9.706454e-06 
## ... Similar to previous best
## Run 100 stress 0.123562 
## Run 101 stress 0.1235621 
## Run 102 stress 0.09428658 
## ... Procrustes: rmse 1.951032e-06  max resid 3.416979e-06 
## ... Similar to previous best
## Run 103 stress 0.1279813 
## Run 104 stress 0.1279813 
## Run 105 stress 0.09428658 
## ... Procrustes: rmse 3.089614e-06  max resid 5.487611e-06 
## ... Similar to previous best
## Run 106 stress 0.09428658 
## ... Procrustes: rmse 1.903149e-06  max resid 3.534002e-06 
## ... Similar to previous best
## Run 107 stress 0.09428658 
## ... Procrustes: rmse 5.278073e-07  max resid 9.704987e-07 
## ... Similar to previous best
## Run 108 stress 0.1279813 
## Run 109 stress 0.09428658 
## ... Procrustes: rmse 3.534133e-06  max resid 7.014872e-06 
## ... Similar to previous best
## Run 110 stress 0.09428658 
## ... Procrustes: rmse 4.46557e-07  max resid 9.497687e-07 
## ... Similar to previous best
## Run 111 stress 0.1279813 
## Run 112 stress 0.1279813 
## Run 113 stress 0.3532051 
## Run 114 stress 0.1279813 
## Run 115 stress 0.123562 
## Run 116 stress 0.09428658 
## ... Procrustes: rmse 2.032596e-06  max resid 3.841896e-06 
## ... Similar to previous best
## Run 117 stress 0.1279813 
## Run 118 stress 0.09428658 
## ... Procrustes: rmse 5.807935e-06  max resid 1.082019e-05 
## ... Similar to previous best
## Run 119 stress 0.1279813 
## Run 120 stress 0.09428658 
## ... Procrustes: rmse 6.448947e-06  max resid 1.008574e-05 
## ... Similar to previous best
## Run 121 stress 0.353205 
## Run 122 stress 0.09428658 
## ... Procrustes: rmse 3.618325e-06  max resid 5.703562e-06 
## ... Similar to previous best
## Run 123 stress 0.1279813 
## Run 124 stress 0.09428658 
## ... Procrustes: rmse 2.000909e-06  max resid 3.523715e-06 
## ... Similar to previous best
## Run 125 stress 0.09428658 
## ... Procrustes: rmse 1.563612e-06  max resid 3.524042e-06 
## ... Similar to previous best
## Run 126 stress 0.1279813 
## Run 127 stress 0.123562 
## Run 128 stress 0.1279813 
## Run 129 stress 0.09428658 
## ... Procrustes: rmse 2.701372e-06  max resid 5.813459e-06 
## ... Similar to previous best
## Run 130 stress 0.09428658 
## ... Procrustes: rmse 2.127525e-06  max resid 4.018342e-06 
## ... Similar to previous best
## Run 131 stress 0.09428658 
## ... Procrustes: rmse 7.548853e-07  max resid 1.711008e-06 
## ... Similar to previous best
## Run 132 stress 0.123562 
## Run 133 stress 0.09428658 
## ... Procrustes: rmse 9.1446e-07  max resid 1.310098e-06 
## ... Similar to previous best
## Run 134 stress 0.1279813 
## Run 135 stress 0.09428658 
## ... Procrustes: rmse 1.354285e-06  max resid 2.601736e-06 
## ... Similar to previous best
## Run 136 stress 0.09428658 
## ... Procrustes: rmse 1.772944e-06  max resid 3.455665e-06 
## ... Similar to previous best
## Run 137 stress 0.1279813 
## Run 138 stress 0.09428658 
## ... Procrustes: rmse 1.917147e-06  max resid 2.92146e-06 
## ... Similar to previous best
## Run 139 stress 0.123562 
## Run 140 stress 0.1235621 
## Run 141 stress 0.1279813 
## Run 142 stress 0.09428658 
## ... Procrustes: rmse 1.26792e-06  max resid 2.163597e-06 
## ... Similar to previous best
## Run 143 stress 0.123562 
## Run 144 stress 0.1279813 
## Run 145 stress 0.1279813 
## Run 146 stress 0.09428658 
## ... Procrustes: rmse 5.98705e-06  max resid 9.827108e-06 
## ... Similar to previous best
## Run 147 stress 0.1235621 
## Run 148 stress 0.09428658 
## ... Procrustes: rmse 2.091931e-06  max resid 4.174607e-06 
## ... Similar to previous best
## Run 149 stress 0.1518355 
## Run 150 stress 0.1279813 
## Run 151 stress 0.09428658 
## ... Procrustes: rmse 1.910798e-06  max resid 3.640834e-06 
## ... Similar to previous best
## Run 152 stress 0.09428658 
## ... Procrustes: rmse 2.204345e-06  max resid 3.5596e-06 
## ... Similar to previous best
## Run 153 stress 0.123562 
## Run 154 stress 0.1279813 
## Run 155 stress 0.09428658 
## ... Procrustes: rmse 1.153625e-06  max resid 1.790498e-06 
## ... Similar to previous best
## Run 156 stress 0.09428658 
## ... New best solution
## ... Procrustes: rmse 5.214424e-07  max resid 1.067547e-06 
## ... Similar to previous best
## Run 157 stress 0.1279813 
## Run 158 stress 0.09428658 
## ... Procrustes: rmse 3.796642e-06  max resid 7.479814e-06 
## ... Similar to previous best
## Run 159 stress 0.1279813 
## Run 160 stress 0.09428658 
## ... Procrustes: rmse 2.149839e-06  max resid 4.679834e-06 
## ... Similar to previous best
## Run 161 stress 0.1279813 
## Run 162 stress 0.09428658 
## ... Procrustes: rmse 3.943066e-06  max resid 6.691271e-06 
## ... Similar to previous best
## Run 163 stress 0.123562 
## Run 164 stress 0.1279813 
## Run 165 stress 0.123562 
## Run 166 stress 0.123562 
## Run 167 stress 0.09428658 
## ... Procrustes: rmse 2.067386e-06  max resid 3.469692e-06 
## ... Similar to previous best
## Run 168 stress 0.09428658 
## ... Procrustes: rmse 3.637938e-06  max resid 6.562768e-06 
## ... Similar to previous best
## Run 169 stress 0.09428658 
## ... Procrustes: rmse 2.903471e-06  max resid 7.216323e-06 
## ... Similar to previous best
## Run 170 stress 0.1279813 
## Run 171 stress 0.3441863 
## Run 172 stress 0.09428658 
## ... Procrustes: rmse 1.988896e-06  max resid 4.252742e-06 
## ... Similar to previous best
## Run 173 stress 0.1518354 
## Run 174 stress 0.09428658 
## ... Procrustes: rmse 5.84793e-07  max resid 9.061855e-07 
## ... Similar to previous best
## Run 175 stress 0.09428658 
## ... Procrustes: rmse 2.102084e-06  max resid 3.758472e-06 
## ... Similar to previous best
## Run 176 stress 0.1279813 
## Run 177 stress 0.09428658 
## ... Procrustes: rmse 1.855032e-06  max resid 5.097311e-06 
## ... Similar to previous best
## Run 178 stress 0.1380679 
## Run 179 stress 0.123562 
## Run 180 stress 0.09428658 
## ... Procrustes: rmse 2.123531e-06  max resid 4.416969e-06 
## ... Similar to previous best
## Run 181 stress 0.1235621 
## Run 182 stress 0.09428658 
## ... Procrustes: rmse 1.228253e-06  max resid 2.182257e-06 
## ... Similar to previous best
## Run 183 stress 0.09428658 
## ... Procrustes: rmse 4.209774e-06  max resid 8.054374e-06 
## ... Similar to previous best
## Run 184 stress 0.1380681 
## Run 185 stress 0.09428658 
## ... Procrustes: rmse 3.054981e-06  max resid 5.570902e-06 
## ... Similar to previous best
## Run 186 stress 0.123562 
## Run 187 stress 0.09428658 
## ... Procrustes: rmse 1.834552e-06  max resid 4.041731e-06 
## ... Similar to previous best
## Run 188 stress 0.09428658 
## ... Procrustes: rmse 1.440388e-06  max resid 3.287663e-06 
## ... Similar to previous best
## Run 189 stress 0.1279813 
## Run 190 stress 0.09428658 
## ... Procrustes: rmse 2.587692e-06  max resid 6.236132e-06 
## ... Similar to previous best
## Run 191 stress 0.1279813 
## Run 192 stress 0.1279813 
## Run 193 stress 0.1279813 
## Run 194 stress 0.1279813 
## Run 195 stress 0.09428658 
## ... Procrustes: rmse 3.748794e-06  max resid 7.358904e-06 
## ... Similar to previous best
## Run 196 stress 0.09428658 
## ... Procrustes: rmse 3.746714e-06  max resid 7.169584e-06 
## ... Similar to previous best
## Run 197 stress 0.1279813 
## Run 198 stress 0.09428658 
## ... Procrustes: rmse 1.027972e-06  max resid 2.479344e-06 
## ... Similar to previous best
## Run 199 stress 0.09428658 
## ... Procrustes: rmse 2.053409e-06  max resid 4.518892e-06 
## ... Similar to previous best
## Run 200 stress 0.123562 
## Run 201 stress 0.09428658 
## ... Procrustes: rmse 4.131119e-06  max resid 8.791761e-06 
## ... Similar to previous best
## Run 202 stress 0.09428658 
## ... Procrustes: rmse 3.61333e-06  max resid 5.83963e-06 
## ... Similar to previous best
## Run 203 stress 0.09428658 
## ... Procrustes: rmse 2.492283e-06  max resid 4.537009e-06 
## ... Similar to previous best
## Run 204 stress 0.1235621 
## Run 205 stress 0.1279813 
## Run 206 stress 0.09428658 
## ... Procrustes: rmse 1.281273e-06  max resid 2.566759e-06 
## ... Similar to previous best
## Run 207 stress 0.1279813 
## Run 208 stress 0.1380682 
## Run 209 stress 0.1518355 
## Run 210 stress 0.123562 
## Run 211 stress 0.09428658 
## ... Procrustes: rmse 2.064144e-05  max resid 4.051828e-05 
## ... Similar to previous best
## Run 212 stress 0.09428658 
## ... Procrustes: rmse 3.2876e-06  max resid 5.876686e-06 
## ... Similar to previous best
## Run 213 stress 0.09428658 
## ... Procrustes: rmse 3.527784e-06  max resid 8.138615e-06 
## ... Similar to previous best
## Run 214 stress 0.1235621 
## Run 215 stress 0.09428658 
## ... Procrustes: rmse 9.277279e-07  max resid 1.848349e-06 
## ... Similar to previous best
## Run 216 stress 0.1235621 
## Run 217 stress 0.09428658 
## ... Procrustes: rmse 3.40282e-06  max resid 6.460332e-06 
## ... Similar to previous best
## Run 218 stress 0.09428658 
## ... Procrustes: rmse 3.116637e-06  max resid 5.632497e-06 
## ... Similar to previous best
## Run 219 stress 0.123562 
## Run 220 stress 0.09428658 
## ... Procrustes: rmse 5.625177e-06  max resid 1.079994e-05 
## ... Similar to previous best
## Run 221 stress 0.09428658 
## ... Procrustes: rmse 3.517347e-06  max resid 6.469844e-06 
## ... Similar to previous best
## Run 222 stress 0.1279813 
## Run 223 stress 0.09428658 
## ... Procrustes: rmse 4.335188e-06  max resid 6.736943e-06 
## ... Similar to previous best
## Run 224 stress 0.09428658 
## ... Procrustes: rmse 2.239815e-06  max resid 3.998415e-06 
## ... Similar to previous best
## Run 225 stress 0.1235621 
## Run 226 stress 0.09428658 
## ... Procrustes: rmse 3.632137e-06  max resid 6.458345e-06 
## ... Similar to previous best
## Run 227 stress 0.09428658 
## ... Procrustes: rmse 3.073271e-06  max resid 4.732351e-06 
## ... Similar to previous best
## Run 228 stress 0.123562 
## Run 229 stress 0.3386474 
## Run 230 stress 0.1518353 
## Run 231 stress 0.09428658 
## ... Procrustes: rmse 8.884738e-07  max resid 1.275844e-06 
## ... Similar to previous best
## Run 232 stress 0.1279813 
## Run 233 stress 0.09428658 
## ... Procrustes: rmse 4.009646e-06  max resid 7.64016e-06 
## ... Similar to previous best
## Run 234 stress 0.1279813 
## Run 235 stress 0.09428658 
## ... New best solution
## ... Procrustes: rmse 6.776847e-07  max resid 1.310334e-06 
## ... Similar to previous best
## Run 236 stress 0.09428658 
## ... Procrustes: rmse 2.915573e-06  max resid 4.632576e-06 
## ... Similar to previous best
## Run 237 stress 0.09428658 
## ... Procrustes: rmse 3.559842e-06  max resid 6.618191e-06 
## ... Similar to previous best
## Run 238 stress 0.1235621 
## Run 239 stress 0.09428658 
## ... Procrustes: rmse 3.034843e-06  max resid 5.833489e-06 
## ... Similar to previous best
## Run 240 stress 0.09428658 
## ... Procrustes: rmse 4.705855e-06  max resid 8.675174e-06 
## ... Similar to previous best
## Run 241 stress 0.09428658 
## ... Procrustes: rmse 6.757255e-06  max resid 1.199492e-05 
## ... Similar to previous best
## Run 242 stress 0.09428658 
## ... Procrustes: rmse 1.152477e-06  max resid 2.124131e-06 
## ... Similar to previous best
## Run 243 stress 0.123562 
## Run 244 stress 0.09428658 
## ... Procrustes: rmse 5.83439e-06  max resid 9.699703e-06 
## ... Similar to previous best
## Run 245 stress 0.09428658 
## ... Procrustes: rmse 4.528145e-06  max resid 8.250019e-06 
## ... Similar to previous best
## Run 246 stress 0.09428658 
## ... Procrustes: rmse 1.036642e-06  max resid 1.558887e-06 
## ... Similar to previous best
## Run 247 stress 0.09428658 
## ... Procrustes: rmse 2.237259e-06  max resid 5.049166e-06 
## ... Similar to previous best
## Run 248 stress 0.09428658 
## ... Procrustes: rmse 1.536838e-06  max resid 2.933498e-06 
## ... Similar to previous best
## Run 249 stress 0.09428658 
## ... Procrustes: rmse 7.443904e-06  max resid 1.395768e-05 
## ... Similar to previous best
## Run 250 stress 0.123562 
## Run 251 stress 0.09428658 
## ... Procrustes: rmse 4.069333e-06  max resid 7.278616e-06 
## ... Similar to previous best
## Run 252 stress 0.123562 
## Run 253 stress 0.123562 
## Run 254 stress 0.1235621 
## Run 255 stress 0.1279813 
## Run 256 stress 0.1235621 
## Run 257 stress 0.09428658 
## ... Procrustes: rmse 1.579842e-06  max resid 3.472925e-06 
## ... Similar to previous best
## Run 258 stress 0.123562 
## Run 259 stress 0.09428658 
## ... Procrustes: rmse 1.024319e-06  max resid 1.956637e-06 
## ... Similar to previous best
## Run 260 stress 0.09428658 
## ... Procrustes: rmse 2.164617e-06  max resid 4.091255e-06 
## ... Similar to previous best
## Run 261 stress 0.09428658 
## ... Procrustes: rmse 2.878406e-06  max resid 6.049562e-06 
## ... Similar to previous best
## Run 262 stress 0.1235621 
## Run 263 stress 0.1279813 
## Run 264 stress 0.09428658 
## ... Procrustes: rmse 9.151695e-07  max resid 2.185324e-06 
## ... Similar to previous best
## Run 265 stress 0.09428658 
## ... Procrustes: rmse 1.137109e-06  max resid 2.106539e-06 
## ... Similar to previous best
## Run 266 stress 0.1279813 
## Run 267 stress 0.123562 
## Run 268 stress 0.09428658 
## ... Procrustes: rmse 8.801539e-06  max resid 1.55651e-05 
## ... Similar to previous best
## Run 269 stress 0.09428658 
## ... Procrustes: rmse 4.545356e-06  max resid 7.937449e-06 
## ... Similar to previous best
## Run 270 stress 0.09428658 
## ... Procrustes: rmse 1.30061e-06  max resid 2.255593e-06 
## ... Similar to previous best
## Run 271 stress 0.09428658 
## ... Procrustes: rmse 2.833735e-06  max resid 5.155689e-06 
## ... Similar to previous best
## Run 272 stress 0.123562 
## Run 273 stress 0.1235621 
## Run 274 stress 0.09428658 
## ... Procrustes: rmse 3.078465e-06  max resid 5.921199e-06 
## ... Similar to previous best
## Run 275 stress 0.09428658 
## ... Procrustes: rmse 4.478491e-06  max resid 1.01786e-05 
## ... Similar to previous best
## Run 276 stress 0.123562 
## Run 277 stress 0.1279813 
## Run 278 stress 0.09428658 
## ... Procrustes: rmse 3.203883e-06  max resid 5.870497e-06 
## ... Similar to previous best
## Run 279 stress 0.09428658 
## ... Procrustes: rmse 9.995148e-07  max resid 1.583626e-06 
## ... Similar to previous best
## Run 280 stress 0.1382 
## Run 281 stress 0.1279813 
## Run 282 stress 0.09428658 
## ... Procrustes: rmse 4.516257e-06  max resid 1.01548e-05 
## ... Similar to previous best
## Run 283 stress 0.123562 
## Run 284 stress 0.123562 
## Run 285 stress 0.09428658 
## ... Procrustes: rmse 1.393159e-06  max resid 2.530107e-06 
## ... Similar to previous best
## Run 286 stress 0.123562 
## Run 287 stress 0.09428658 
## ... Procrustes: rmse 1.077887e-06  max resid 2.530334e-06 
## ... Similar to previous best
## Run 288 stress 0.09428658 
## ... Procrustes: rmse 3.06935e-06  max resid 4.800479e-06 
## ... Similar to previous best
## Run 289 stress 0.1279813 
## Run 290 stress 0.09428658 
## ... New best solution
## ... Procrustes: rmse 4.925192e-07  max resid 8.378069e-07 
## ... Similar to previous best
## Run 291 stress 0.09428658 
## ... Procrustes: rmse 2.723798e-06  max resid 5.802886e-06 
## ... Similar to previous best
## Run 292 stress 0.123562 
## Run 293 stress 0.123562 
## Run 294 stress 0.123562 
## Run 295 stress 0.09428658 
## ... Procrustes: rmse 3.15916e-06  max resid 6.265085e-06 
## ... Similar to previous best
## Run 296 stress 0.1490896 
## Run 297 stress 0.123562 
## Run 298 stress 0.2990515 
## Run 299 stress 0.123562 
## Run 300 stress 0.1235621 
## Run 301 stress 0.09428658 
## ... Procrustes: rmse 7.028621e-07  max resid 1.632524e-06 
## ... Similar to previous best
## Run 302 stress 0.1279813 
## Run 303 stress 0.09428658 
## ... Procrustes: rmse 5.729049e-06  max resid 1.144037e-05 
## ... Similar to previous best
## Run 304 stress 0.09428658 
## ... Procrustes: rmse 4.856708e-06  max resid 8.925923e-06 
## ... Similar to previous best
## Run 305 stress 0.1279813 
## Run 306 stress 0.09428658 
## ... Procrustes: rmse 1.797794e-06  max resid 3.791743e-06 
## ... Similar to previous best
## Run 307 stress 0.1279813 
## Run 308 stress 0.1279813 
## Run 309 stress 0.1279813 
## Run 310 stress 0.1380678 
## Run 311 stress 0.123562 
## Run 312 stress 0.1380679 
## Run 313 stress 0.3434206 
## Run 314 stress 0.1279813 
## Run 315 stress 0.09428658 
## ... Procrustes: rmse 3.8928e-06  max resid 7.842607e-06 
## ... Similar to previous best
## Run 316 stress 0.1279813 
## Run 317 stress 0.1279813 
## Run 318 stress 0.1235621 
## Run 319 stress 0.09428658 
## ... Procrustes: rmse 1.108726e-06  max resid 1.770227e-06 
## ... Similar to previous best
## Run 320 stress 0.09428658 
## ... Procrustes: rmse 4.71896e-06  max resid 8.99603e-06 
## ... Similar to previous best
## Run 321 stress 0.1279813 
## Run 322 stress 0.1279813 
## Run 323 stress 0.1279813 
## Run 324 stress 0.09428658 
## ... Procrustes: rmse 3.832265e-06  max resid 8.133131e-06 
## ... Similar to previous best
## Run 325 stress 0.123562 
## Run 326 stress 0.1279813 
## Run 327 stress 0.09428658 
## ... Procrustes: rmse 2.416057e-06  max resid 3.899363e-06 
## ... Similar to previous best
## Run 328 stress 0.1380679 
## Run 329 stress 0.1279813 
## Run 330 stress 0.09428658 
## ... Procrustes: rmse 1.276024e-06  max resid 3.35159e-06 
## ... Similar to previous best
## Run 331 stress 0.09428658 
## ... Procrustes: rmse 2.904368e-06  max resid 6.340049e-06 
## ... Similar to previous best
## Run 332 stress 0.1279813 
## Run 333 stress 0.09428658 
## ... Procrustes: rmse 1.19952e-06  max resid 2.747065e-06 
## ... Similar to previous best
## Run 334 stress 0.09428658 
## ... Procrustes: rmse 1.813473e-06  max resid 3.872872e-06 
## ... Similar to previous best
## Run 335 stress 0.123562 
## Run 336 stress 0.09428658 
## ... Procrustes: rmse 3.834138e-06  max resid 7.307436e-06 
## ... Similar to previous best
## Run 337 stress 0.09428658 
## ... Procrustes: rmse 2.722019e-06  max resid 4.331342e-06 
## ... Similar to previous best
## Run 338 stress 0.1279813 
## Run 339 stress 0.09428658 
## ... Procrustes: rmse 7.48993e-06  max resid 1.346211e-05 
## ... Similar to previous best
## Run 340 stress 0.09428658 
## ... Procrustes: rmse 2.45224e-06  max resid 4.140597e-06 
## ... Similar to previous best
## Run 341 stress 0.1380678 
## Run 342 stress 0.09428658 
## ... Procrustes: rmse 2.869991e-06  max resid 5.636561e-06 
## ... Similar to previous best
## Run 343 stress 0.09428658 
## ... Procrustes: rmse 2.432578e-06  max resid 4.795844e-06 
## ... Similar to previous best
## Run 344 stress 0.1382 
## Run 345 stress 0.1279813 
## Run 346 stress 0.09428658 
## ... Procrustes: rmse 4.161062e-06  max resid 7.03155e-06 
## ... Similar to previous best
## Run 347 stress 0.1279813 
## Run 348 stress 0.09428658 
## ... Procrustes: rmse 2.0454e-06  max resid 3.302079e-06 
## ... Similar to previous best
## Run 349 stress 0.09428658 
## ... Procrustes: rmse 4.442561e-07  max resid 8.144911e-07 
## ... Similar to previous best
## Run 350 stress 0.1279813 
## Run 351 stress 0.123562 
## Run 352 stress 0.09428658 
## ... Procrustes: rmse 1.325997e-06  max resid 2.099484e-06 
## ... Similar to previous best
## Run 353 stress 0.1279813 
## Run 354 stress 0.1279813 
## Run 355 stress 0.123562 
## Run 356 stress 0.09428658 
## ... Procrustes: rmse 2.348591e-06  max resid 4.985172e-06 
## ... Similar to previous best
## Run 357 stress 0.09428658 
## ... Procrustes: rmse 2.337474e-06  max resid 3.807161e-06 
## ... Similar to previous best
## Run 358 stress 0.1235621 
## Run 359 stress 0.09428658 
## ... Procrustes: rmse 2.441934e-06  max resid 5.706586e-06 
## ... Similar to previous best
## Run 360 stress 0.1380678 
## Run 361 stress 0.123562 
## Run 362 stress 0.09428658 
## ... Procrustes: rmse 2.130325e-06  max resid 3.992308e-06 
## ... Similar to previous best
## Run 363 stress 0.1279813 
## Run 364 stress 0.123562 
## Run 365 stress 0.123562 
## Run 366 stress 0.09428658 
## ... Procrustes: rmse 3.089982e-06  max resid 5.997371e-06 
## ... Similar to previous best
## Run 367 stress 0.09428658 
## ... Procrustes: rmse 2.455765e-06  max resid 3.811892e-06 
## ... Similar to previous best
## Run 368 stress 0.09428658 
## ... Procrustes: rmse 7.243311e-06  max resid 1.218052e-05 
## ... Similar to previous best
## Run 369 stress 0.123562 
## Run 370 stress 0.1279813 
## Run 371 stress 0.123562 
## Run 372 stress 0.09428658 
## ... Procrustes: rmse 4.660222e-07  max resid 1.08594e-06 
## ... Similar to previous best
## Run 373 stress 0.09428658 
## ... Procrustes: rmse 1.567114e-06  max resid 2.874542e-06 
## ... Similar to previous best
## Run 374 stress 0.1279813 
## Run 375 stress 0.1279813 
## Run 376 stress 0.09428658 
## ... Procrustes: rmse 3.256939e-06  max resid 7.886871e-06 
## ... Similar to previous best
## Run 377 stress 0.09428658 
## ... Procrustes: rmse 4.171201e-06  max resid 6.667033e-06 
## ... Similar to previous best
## Run 378 stress 0.123562 
## Run 379 stress 0.09428658 
## ... Procrustes: rmse 2.502747e-06  max resid 5.131837e-06 
## ... Similar to previous best
## Run 380 stress 0.09428658 
## ... Procrustes: rmse 2.912443e-06  max resid 5.102176e-06 
## ... Similar to previous best
## Run 381 stress 0.1235621 
## Run 382 stress 0.09428658 
## ... Procrustes: rmse 3.229408e-06  max resid 6.698376e-06 
## ... Similar to previous best
## Run 383 stress 0.123562 
## Run 384 stress 0.09428658 
## ... Procrustes: rmse 9.20529e-06  max resid 1.759966e-05 
## ... Similar to previous best
## Run 385 stress 0.09428658 
## ... Procrustes: rmse 1.735536e-06  max resid 3.526921e-06 
## ... Similar to previous best
## Run 386 stress 0.09428658 
## ... Procrustes: rmse 3.155616e-06  max resid 5.588961e-06 
## ... Similar to previous best
## Run 387 stress 0.1279813 
## Run 388 stress 0.09428658 
## ... Procrustes: rmse 4.043743e-06  max resid 8.914978e-06 
## ... Similar to previous best
## Run 389 stress 0.09428658 
## ... Procrustes: rmse 1.165695e-06  max resid 2.613003e-06 
## ... Similar to previous best
## Run 390 stress 0.09428658 
## ... Procrustes: rmse 2.915251e-06  max resid 5.523286e-06 
## ... Similar to previous best
## Run 391 stress 0.123562 
## Run 392 stress 0.09428658 
## ... Procrustes: rmse 1.781014e-06  max resid 4.622809e-06 
## ... Similar to previous best
## Run 393 stress 0.1490896 
## Run 394 stress 0.138068 
## Run 395 stress 0.123562 
## Run 396 stress 0.1279813 
## Run 397 stress 0.123562 
## Run 398 stress 0.09428658 
## ... Procrustes: rmse 8.940219e-07  max resid 2.238067e-06 
## ... Similar to previous best
## Run 399 stress 0.123562 
## Run 400 stress 0.09428658 
## ... Procrustes: rmse 1.515107e-06  max resid 3.251667e-06 
## ... Similar to previous best
## Run 401 stress 0.09428658 
## ... Procrustes: rmse 1.706867e-06  max resid 2.768028e-06 
## ... Similar to previous best
## Run 402 stress 0.09428658 
## ... Procrustes: rmse 3.269498e-06  max resid 9.040845e-06 
## ... Similar to previous best
## Run 403 stress 0.1235621 
## Run 404 stress 0.09428658 
## ... Procrustes: rmse 3.43376e-06  max resid 6.267076e-06 
## ... Similar to previous best
## Run 405 stress 0.09428658 
## ... Procrustes: rmse 1.012621e-06  max resid 2.517325e-06 
## ... Similar to previous best
## Run 406 stress 0.1279813 
## Run 407 stress 0.1279813 
## Run 408 stress 0.1380678 
## Run 409 stress 0.1279813 
## Run 410 stress 0.1490896 
## Run 411 stress 0.09428658 
## ... Procrustes: rmse 2.623396e-06  max resid 4.709969e-06 
## ... Similar to previous best
## Run 412 stress 0.1279813 
## Run 413 stress 0.09428658 
## ... Procrustes: rmse 4.301572e-06  max resid 8.535679e-06 
## ... Similar to previous best
## Run 414 stress 0.1279813 
## Run 415 stress 0.09428658 
## ... Procrustes: rmse 8.153955e-07  max resid 1.990827e-06 
## ... Similar to previous best
## Run 416 stress 0.09428658 
## ... Procrustes: rmse 1.98683e-06  max resid 3.209748e-06 
## ... Similar to previous best
## Run 417 stress 0.1279813 
## Run 418 stress 0.1518355 
## Run 419 stress 0.1279813 
## Run 420 stress 0.1279813 
## Run 421 stress 0.09428658 
## ... Procrustes: rmse 9.948215e-07  max resid 1.986987e-06 
## ... Similar to previous best
## Run 422 stress 0.1279813 
## Run 423 stress 0.3379685 
## Run 424 stress 0.1279813 
## Run 425 stress 0.09428658 
## ... Procrustes: rmse 2.751561e-06  max resid 7.422649e-06 
## ... Similar to previous best
## Run 426 stress 0.09428658 
## ... Procrustes: rmse 5.153956e-06  max resid 9.881644e-06 
## ... Similar to previous best
## Run 427 stress 0.09428658 
## ... Procrustes: rmse 6.833703e-06  max resid 1.17144e-05 
## ... Similar to previous best
## Run 428 stress 0.09428658 
## ... Procrustes: rmse 1.655856e-06  max resid 3.519211e-06 
## ... Similar to previous best
## Run 429 stress 0.09428658 
## ... Procrustes: rmse 2.136829e-06  max resid 3.441587e-06 
## ... Similar to previous best
## Run 430 stress 0.09428658 
## ... Procrustes: rmse 1.756855e-06  max resid 3.724493e-06 
## ... Similar to previous best
## Run 431 stress 0.09428658 
## ... Procrustes: rmse 2.756987e-06  max resid 6.866995e-06 
## ... Similar to previous best
## Run 432 stress 0.09428658 
## ... Procrustes: rmse 7.105598e-07  max resid 1.537334e-06 
## ... Similar to previous best
## Run 433 stress 0.1279813 
## Run 434 stress 0.09428658 
## ... Procrustes: rmse 2.166956e-06  max resid 3.448793e-06 
## ... Similar to previous best
## Run 435 stress 0.1279813 
## Run 436 stress 0.09428658 
## ... Procrustes: rmse 2.623607e-06  max resid 6.232882e-06 
## ... Similar to previous best
## Run 437 stress 0.1279813 
## Run 438 stress 0.1279813 
## Run 439 stress 0.1279813 
## Run 440 stress 0.09428658 
## ... Procrustes: rmse 1.869875e-06  max resid 3.231906e-06 
## ... Similar to previous best
## Run 441 stress 0.123562 
## Run 442 stress 0.09428658 
## ... Procrustes: rmse 9.363867e-07  max resid 1.67707e-06 
## ... Similar to previous best
## Run 443 stress 0.09428658 
## ... Procrustes: rmse 6.220545e-06  max resid 1.19998e-05 
## ... Similar to previous best
## Run 444 stress 0.09428658 
## ... Procrustes: rmse 4.112357e-06  max resid 8.85126e-06 
## ... Similar to previous best
## Run 445 stress 0.123562 
## Run 446 stress 0.1518353 
## Run 447 stress 0.123562 
## Run 448 stress 0.1235621 
## Run 449 stress 0.09428658 
## ... Procrustes: rmse 9.753586e-07  max resid 1.793487e-06 
## ... Similar to previous best
## Run 450 stress 0.09428658 
## ... Procrustes: rmse 1.778216e-06  max resid 3.882352e-06 
## ... Similar to previous best
## Run 451 stress 0.123562 
## Run 452 stress 0.123562 
## Run 453 stress 0.1279813 
## Run 454 stress 0.1279813 
## Run 455 stress 0.1279813 
## Run 456 stress 0.09428658 
## ... Procrustes: rmse 1.553376e-06  max resid 3.540018e-06 
## ... Similar to previous best
## Run 457 stress 0.3047261 
## Run 458 stress 0.09428658 
## ... Procrustes: rmse 1.072127e-06  max resid 1.880765e-06 
## ... Similar to previous best
## Run 459 stress 0.1279813 
## Run 460 stress 0.09428658 
## ... Procrustes: rmse 3.463516e-06  max resid 7.05199e-06 
## ... Similar to previous best
## Run 461 stress 0.09428658 
## ... Procrustes: rmse 8.541288e-07  max resid 1.944952e-06 
## ... Similar to previous best
## Run 462 stress 0.09428658 
## ... Procrustes: rmse 2.339311e-06  max resid 5.03379e-06 
## ... Similar to previous best
## Run 463 stress 0.1279813 
## Run 464 stress 0.09428658 
## ... Procrustes: rmse 4.86771e-06  max resid 9.19794e-06 
## ... Similar to previous best
## Run 465 stress 0.09428658 
## ... Procrustes: rmse 1.716621e-06  max resid 2.939384e-06 
## ... Similar to previous best
## Run 466 stress 0.09428658 
## ... Procrustes: rmse 6.502974e-06  max resid 1.222132e-05 
## ... Similar to previous best
## Run 467 stress 0.1279813 
## Run 468 stress 0.1279813 
## Run 469 stress 0.1518354 
## Run 470 stress 0.1279813 
## Run 471 stress 0.09428658 
## ... Procrustes: rmse 2.22714e-06  max resid 4.758483e-06 
## ... Similar to previous best
## Run 472 stress 0.09428658 
## ... Procrustes: rmse 4.420812e-06  max resid 8.355904e-06 
## ... Similar to previous best
## Run 473 stress 0.123562 
## Run 474 stress 0.09428658 
## ... Procrustes: rmse 3.218123e-06  max resid 6.191637e-06 
## ... Similar to previous best
## Run 475 stress 0.09428658 
## ... Procrustes: rmse 6.549284e-06  max resid 1.04873e-05 
## ... Similar to previous best
## Run 476 stress 0.1279813 
## Run 477 stress 0.1490896 
## Run 478 stress 0.09428658 
## ... Procrustes: rmse 4.19578e-06  max resid 8.242523e-06 
## ... Similar to previous best
## Run 479 stress 0.1380678 
## Run 480 stress 0.09428658 
## ... Procrustes: rmse 7.799248e-07  max resid 1.766785e-06 
## ... Similar to previous best
## Run 481 stress 0.09428658 
## ... Procrustes: rmse 3.112455e-06  max resid 5.11912e-06 
## ... Similar to previous best
## Run 482 stress 0.09428658 
## ... Procrustes: rmse 2.160641e-06  max resid 3.425834e-06 
## ... Similar to previous best
## Run 483 stress 0.09428658 
## ... Procrustes: rmse 2.601818e-06  max resid 6.473298e-06 
## ... Similar to previous best
## Run 484 stress 0.123562 
## Run 485 stress 0.09428658 
## ... Procrustes: rmse 1.983711e-06  max resid 3.965701e-06 
## ... Similar to previous best
## Run 486 stress 0.1279813 
## Run 487 stress 0.09428658 
## ... Procrustes: rmse 1.861251e-06  max resid 2.942649e-06 
## ... Similar to previous best
## Run 488 stress 0.123562 
## Run 489 stress 0.123562 
## Run 490 stress 0.123562 
## Run 491 stress 0.1518353 
## Run 492 stress 0.1279813 
## Run 493 stress 0.09428658 
## ... Procrustes: rmse 7.642623e-07  max resid 1.220908e-06 
## ... Similar to previous best
## Run 494 stress 0.09428658 
## ... Procrustes: rmse 1.756544e-06  max resid 4.276958e-06 
## ... Similar to previous best
## Run 495 stress 0.123562 
## Run 496 stress 0.1490896 
## Run 497 stress 0.1279813 
## Run 498 stress 0.09428658 
## ... Procrustes: rmse 1.018315e-06  max resid 1.850571e-06 
## ... Similar to previous best
## Run 499 stress 0.09428658 
## ... Procrustes: rmse 4.037974e-06  max resid 8.669512e-06 
## ... Similar to previous best
## Run 500 stress 0.1235621 
## *** Best solution repeated 97 times
# Stratified lakes and ocean sites
pdbso_NMDS <- metaMDS(pdbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.05794554 
## Run 1 stress 0.05438255 
## ... New best solution
## ... Procrustes: rmse 0.02975648  max resid 0.06000307 
## Run 2 stress 0.04733854 
## ... New best solution
## ... Procrustes: rmse 0.06320461  max resid 0.1560589 
## Run 3 stress 0.05794552 
## Run 4 stress 0.04704142 
## ... New best solution
## ... Procrustes: rmse 0.05309649  max resid 0.1468445 
## Run 5 stress 0.04704142 
## ... New best solution
## ... Procrustes: rmse 1.196575e-05  max resid 2.164824e-05 
## ... Similar to previous best
## Run 6 stress 0.04704142 
## ... Procrustes: rmse 1.980917e-05  max resid 4.894869e-05 
## ... Similar to previous best
## Run 7 stress 0.04733845 
## ... Procrustes: rmse 0.0531161  max resid 0.1478864 
## Run 8 stress 0.06793793 
## Run 9 stress 0.04733848 
## ... Procrustes: rmse 0.05312342  max resid 0.1478241 
## Run 10 stress 0.0579456 
## Run 11 stress 0.04704143 
## ... Procrustes: rmse 3.656296e-05  max resid 7.989583e-05 
## ... Similar to previous best
## Run 12 stress 0.3292637 
## Run 13 stress 0.04733848 
## ... Procrustes: rmse 0.05311938  max resid 0.1478231 
## Run 14 stress 0.05368169 
## Run 15 stress 0.357849 
## Run 16 stress 0.05820947 
## Run 17 stress 0.04733851 
## ... Procrustes: rmse 0.05312557  max resid 0.1477993 
## Run 18 stress 0.05120133 
## Run 19 stress 0.04976569 
## Run 20 stress 0.05692511 
## Run 21 stress 0.05683291 
## Run 22 stress 0.05368173 
## Run 23 stress 0.05120129 
## Run 24 stress 0.0602173 
## Run 25 stress 0.04976561 
## Run 26 stress 0.0512014 
## Run 27 stress 0.05192135 
## Run 28 stress 0.05670742 
## Run 29 stress 0.0579455 
## Run 30 stress 0.0473385 
## ... Procrustes: rmse 0.0531016  max resid 0.1479598 
## Run 31 stress 0.06492713 
## Run 32 stress 0.05289269 
## Run 33 stress 0.04733858 
## ... Procrustes: rmse 0.05313107  max resid 0.1477613 
## Run 34 stress 0.05670742 
## Run 35 stress 0.05270351 
## Run 36 stress 0.05270349 
## Run 37 stress 0.3495701 
## Run 38 stress 0.04733847 
## ... Procrustes: rmse 0.0531059  max resid 0.1479361 
## Run 39 stress 0.05356863 
## Run 40 stress 0.05821018 
## Run 41 stress 0.05593314 
## Run 42 stress 0.05120094 
## Run 43 stress 0.05733789 
## Run 44 stress 0.3495692 
## Run 45 stress 0.0512014 
## Run 46 stress 0.05967101 
## Run 47 stress 0.05967105 
## Run 48 stress 0.0497656 
## Run 49 stress 0.05967085 
## Run 50 stress 0.05434412 
## Run 51 stress 0.05605326 
## Run 52 stress 0.05832481 
## Run 53 stress 0.05683285 
## Run 54 stress 0.05733799 
## Run 55 stress 0.06021728 
## Run 56 stress 0.05356861 
## Run 57 stress 0.06021731 
## Run 58 stress 0.04733846 
## ... Procrustes: rmse 0.05310578  max resid 0.1478538 
## Run 59 stress 0.05434411 
## Run 60 stress 0.05434413 
## Run 61 stress 0.06021732 
## Run 62 stress 0.05794567 
## Run 63 stress 0.05670745 
## Run 64 stress 0.05683277 
## Run 65 stress 0.05670745 
## Run 66 stress 0.04976569 
## Run 67 stress 0.04733848 
## ... Procrustes: rmse 0.053098  max resid 0.1478978 
## Run 68 stress 0.04704142 
## ... New best solution
## ... Procrustes: rmse 2.48778e-06  max resid 5.7008e-06 
## ... Similar to previous best
## Run 69 stress 0.05440161 
## Run 70 stress 0.04976569 
## Run 71 stress 0.05692498 
## Run 72 stress 0.04704144 
## ... Procrustes: rmse 4.743474e-05  max resid 0.000116958 
## ... Similar to previous best
## Run 73 stress 0.05683287 
## Run 74 stress 0.05794563 
## Run 75 stress 0.05670743 
## Run 76 stress 0.04733851 
## ... Procrustes: rmse 0.05310257  max resid 0.1479655 
## Run 77 stress 0.05794559 
## Run 78 stress 0.05794551 
## Run 79 stress 0.05683281 
## Run 80 stress 0.04704142 
## ... Procrustes: rmse 1.891685e-05  max resid 3.156844e-05 
## ... Similar to previous best
## Run 81 stress 0.05794554 
## Run 82 stress 0.0579456 
## Run 83 stress 0.04976563 
## Run 84 stress 0.05270349 
## Run 85 stress 0.04704142 
## ... Procrustes: rmse 8.623101e-06  max resid 1.422944e-05 
## ... Similar to previous best
## Run 86 stress 0.04976573 
## Run 87 stress 0.05438267 
## Run 88 stress 0.06287263 
## Run 89 stress 0.04976565 
## Run 90 stress 0.0583246 
## Run 91 stress 0.06021728 
## Run 92 stress 0.05438259 
## Run 93 stress 0.05434411 
## Run 94 stress 0.05850684 
## Run 95 stress 0.05438251 
## Run 96 stress 0.0628726 
## Run 97 stress 0.05434414 
## Run 98 stress 0.05593298 
## Run 99 stress 0.04704142 
## ... Procrustes: rmse 6.744311e-06  max resid 1.413352e-05 
## ... Similar to previous best
## Run 100 stress 0.05289271 
## Run 101 stress 0.0497658 
## Run 102 stress 0.05593298 
## Run 103 stress 0.05850686 
## Run 104 stress 0.06021731 
## Run 105 stress 0.05820946 
## Run 106 stress 0.357849 
## Run 107 stress 0.05356859 
## Run 108 stress 0.04704144 
## ... Procrustes: rmse 2.237978e-05  max resid 4.504282e-05 
## ... Similar to previous best
## Run 109 stress 0.0473385 
## ... Procrustes: rmse 0.05310265  max resid 0.1479649 
## Run 110 stress 0.05967084 
## Run 111 stress 0.04704145 
## ... Procrustes: rmse 6.754041e-05  max resid 0.0001724499 
## ... Similar to previous best
## Run 112 stress 0.05368174 
## Run 113 stress 0.04976567 
## Run 114 stress 0.04976561 
## Run 115 stress 0.04733845 
## ... Procrustes: rmse 0.053116  max resid 0.1478705 
## Run 116 stress 0.05692508 
## Run 117 stress 0.05434416 
## Run 118 stress 0.0582094 
## Run 119 stress 0.05850677 
## Run 120 stress 0.05670745 
## Run 121 stress 0.04733854 
## ... Procrustes: rmse 0.05309872  max resid 0.1479852 
## Run 122 stress 0.05356863 
## Run 123 stress 0.04733847 
## ... Procrustes: rmse 0.05311255  max resid 0.1479093 
## Run 124 stress 0.05270354 
## Run 125 stress 0.04976563 
## Run 126 stress 0.05438254 
## Run 127 stress 0.04704143 
## ... Procrustes: rmse 4.083792e-05  max resid 6.713244e-05 
## ... Similar to previous best
## Run 128 stress 0.04976577 
## Run 129 stress 0.04704142 
## ... Procrustes: rmse 1.624262e-05  max resid 3.62937e-05 
## ... Similar to previous best
## Run 130 stress 0.04976563 
## Run 131 stress 0.04976564 
## Run 132 stress 0.04976572 
## Run 133 stress 0.05733804 
## Run 134 stress 0.05270349 
## Run 135 stress 0.04976563 
## Run 136 stress 0.04733845 
## ... Procrustes: rmse 0.05311612  max resid 0.1478873 
## Run 137 stress 0.06876685 
## Run 138 stress 0.05289269 
## Run 139 stress 0.0579457 
## Run 140 stress 0.06696167 
## Run 141 stress 0.05440163 
## Run 142 stress 0.05192134 
## Run 143 stress 0.05733783 
## Run 144 stress 0.04704142 
## ... Procrustes: rmse 3.993962e-06  max resid 6.960098e-06 
## ... Similar to previous best
## Run 145 stress 0.06829694 
## Run 146 stress 0.05438263 
## Run 147 stress 0.05692516 
## Run 148 stress 0.04733851 
## ... Procrustes: rmse 0.05310188  max resid 0.1479638 
## Run 149 stress 0.05967096 
## Run 150 stress 0.05289269 
## Run 151 stress 0.05165245 
## Run 152 stress 0.05192132 
## Run 153 stress 0.04733859 
## ... Procrustes: rmse 0.05309779  max resid 0.1479891 
## Run 154 stress 0.05440159 
## Run 155 stress 0.04704143 
## ... Procrustes: rmse 2.5144e-05  max resid 6.260045e-05 
## ... Similar to previous best
## Run 156 stress 0.06287261 
## Run 157 stress 0.04976569 
## Run 158 stress 0.05502839 
## Run 159 stress 0.05820952 
## Run 160 stress 0.05438256 
## Run 161 stress 0.05356859 
## Run 162 stress 0.04976562 
## Run 163 stress 0.05120159 
## Run 164 stress 0.05438267 
## Run 165 stress 0.04976569 
## Run 166 stress 0.06876678 
## Run 167 stress 0.05120141 
## Run 168 stress 0.05670743 
## Run 169 stress 0.05733796 
## Run 170 stress 0.04733846 
## ... Procrustes: rmse 0.05311795  max resid 0.1478452 
## Run 171 stress 0.05356859 
## Run 172 stress 0.05270355 
## Run 173 stress 0.05438255 
## Run 174 stress 0.05438255 
## Run 175 stress 0.04976564 
## Run 176 stress 0.05794555 
## Run 177 stress 0.05692512 
## Run 178 stress 0.05438262 
## Run 179 stress 0.0543441 
## Run 180 stress 0.05820932 
## Run 181 stress 0.04733848 
## ... Procrustes: rmse 0.05310545  max resid 0.1479454 
## Run 182 stress 0.05670745 
## Run 183 stress 0.06021728 
## Run 184 stress 0.05794565 
## Run 185 stress 0.06021732 
## Run 186 stress 0.05692519 
## Run 187 stress 0.05438253 
## Run 188 stress 0.06492705 
## Run 189 stress 0.04733854 
## ... Procrustes: rmse 0.05312881  max resid 0.1477872 
## Run 190 stress 0.05438256 
## Run 191 stress 0.05794559 
## Run 192 stress 0.05692498 
## Run 193 stress 0.05440157 
## Run 194 stress 0.05192133 
## Run 195 stress 0.05438254 
## Run 196 stress 0.05120101 
## Run 197 stress 0.05683289 
## Run 198 stress 0.05368169 
## Run 199 stress 0.04976577 
## Run 200 stress 0.06374884 
## Run 201 stress 0.04704142 
## ... Procrustes: rmse 2.177256e-05  max resid 4.430379e-05 
## ... Similar to previous best
## Run 202 stress 0.04733848 
## ... Procrustes: rmse 0.05312361  max resid 0.1478327 
## Run 203 stress 0.04704142 
## ... Procrustes: rmse 3.898952e-06  max resid 7.19412e-06 
## ... Similar to previous best
## Run 204 stress 0.04976581 
## Run 205 stress 0.05192132 
## Run 206 stress 0.3578483 
## Run 207 stress 0.3493378 
## Run 208 stress 0.05794552 
## Run 209 stress 0.06287264 
## Run 210 stress 0.05692497 
## Run 211 stress 0.06021731 
## Run 212 stress 0.06374881 
## Run 213 stress 0.06876673 
## Run 214 stress 0.0527035 
## Run 215 stress 0.05120101 
## Run 216 stress 0.04733847 
## ... Procrustes: rmse 0.05310846  max resid 0.1479294 
## Run 217 stress 0.05670747 
## Run 218 stress 0.06021729 
## Run 219 stress 0.05502839 
## Run 220 stress 0.06793795 
## Run 221 stress 0.04704144 
## ... Procrustes: rmse 5.507254e-05  max resid 0.0001410426 
## ... Similar to previous best
## Run 222 stress 0.05926581 
## Run 223 stress 0.05794552 
## Run 224 stress 0.04733849 
## ... Procrustes: rmse 0.05310401  max resid 0.1479549 
## Run 225 stress 0.05926577 
## Run 226 stress 0.04976573 
## Run 227 stress 0.04976561 
## Run 228 stress 0.04704143 
## ... Procrustes: rmse 3.464799e-05  max resid 8.664827e-05 
## ... Similar to previous best
## Run 229 stress 0.05120149 
## Run 230 stress 0.05926579 
## Run 231 stress 0.04733845 
## ... Procrustes: rmse 0.05311501  max resid 0.1478931 
## Run 232 stress 0.0527035 
## Run 233 stress 0.05692524 
## Run 234 stress 0.0497657 
## Run 235 stress 0.04976568 
## Run 236 stress 0.06374888 
## Run 237 stress 0.0535686 
## Run 238 stress 0.04704142 
## ... Procrustes: rmse 2.331741e-05  max resid 5.057826e-05 
## ... Similar to previous best
## Run 239 stress 0.04704144 
## ... Procrustes: rmse 5.073083e-05  max resid 8.702986e-05 
## ... Similar to previous best
## Run 240 stress 0.0473385 
## ... Procrustes: rmse 0.05310236  max resid 0.1479626 
## Run 241 stress 0.04704142 
## ... Procrustes: rmse 1.192035e-05  max resid 1.908713e-05 
## ... Similar to previous best
## Run 242 stress 0.04704142 
## ... Procrustes: rmse 3.296247e-06  max resid 5.700387e-06 
## ... Similar to previous best
## Run 243 stress 0.04733846 
## ... Procrustes: rmse 0.05310945  max resid 0.1479241 
## Run 244 stress 0.04733845 
## ... Procrustes: rmse 0.0531144  max resid 0.147853 
## Run 245 stress 0.04976577 
## Run 246 stress 0.05270351 
## Run 247 stress 0.06793801 
## Run 248 stress 0.05670743 
## Run 249 stress 0.0543441 
## Run 250 stress 0.05165246 
## Run 251 stress 0.04733849 
## ... Procrustes: rmse 0.05311288  max resid 0.1479035 
## Run 252 stress 0.05733784 
## Run 253 stress 0.05670745 
## Run 254 stress 0.0602173 
## Run 255 stress 0.05692495 
## Run 256 stress 0.04733848 
## ... Procrustes: rmse 0.05310511  max resid 0.14795 
## Run 257 stress 0.04976561 
## Run 258 stress 0.05192135 
## Run 259 stress 0.05670746 
## Run 260 stress 0.05270351 
## Run 261 stress 0.04733846 
## ... Procrustes: rmse 0.05311723  max resid 0.1478644 
## Run 262 stress 0.05356866 
## Run 263 stress 0.04733846 
## ... Procrustes: rmse 0.05310852  max resid 0.1478943 
## Run 264 stress 0.04976563 
## Run 265 stress 0.05438255 
## Run 266 stress 0.05122765 
## Run 267 stress 0.04733847 
## ... Procrustes: rmse 0.05310837  max resid 0.1479309 
## Run 268 stress 0.04733847 
## ... Procrustes: rmse 0.05310715  max resid 0.1479386 
## Run 269 stress 0.05692514 
## Run 270 stress 0.05356859 
## Run 271 stress 0.0535686 
## Run 272 stress 0.05120115 
## Run 273 stress 0.06287265 
## Run 274 stress 0.05120097 
## Run 275 stress 0.04733852 
## ... Procrustes: rmse 0.0531035  max resid 0.1479672 
## Run 276 stress 0.06374883 
## Run 277 stress 0.06492706 
## Run 278 stress 0.04704144 
## ... Procrustes: rmse 4.800145e-05  max resid 7.8448e-05 
## ... Similar to previous best
## Run 279 stress 0.04733846 
## ... Procrustes: rmse 0.05310981  max resid 0.1478718 
## Run 280 stress 0.05683281 
## Run 281 stress 0.05192134 
## Run 282 stress 0.05434414 
## Run 283 stress 0.0543441 
## Run 284 stress 0.05120132 
## Run 285 stress 0.05794553 
## Run 286 stress 0.04976574 
## Run 287 stress 0.05192132 
## Run 288 stress 0.04733847 
## ... Procrustes: rmse 0.05311171  max resid 0.1479112 
## Run 289 stress 0.05794556 
## Run 290 stress 0.05270349 
## Run 291 stress 0.05794559 
## Run 292 stress 0.05593305 
## Run 293 stress 0.05165244 
## Run 294 stress 0.04704142 
## ... Procrustes: rmse 7.742848e-06  max resid 1.815446e-05 
## ... Similar to previous best
## Run 295 stress 0.05438256 
## Run 296 stress 0.0628727 
## Run 297 stress 0.0569251 
## Run 298 stress 0.05165244 
## Run 299 stress 0.06021732 
## Run 300 stress 0.05438252 
## Run 301 stress 0.04733855 
## ... Procrustes: rmse 0.0531289  max resid 0.1477777 
## Run 302 stress 0.05120101 
## Run 303 stress 0.04704144 
## ... Procrustes: rmse 4.360024e-05  max resid 8.505314e-05 
## ... Similar to previous best
## Run 304 stress 0.0535686 
## Run 305 stress 0.04976562 
## Run 306 stress 0.05438252 
## Run 307 stress 0.05438262 
## Run 308 stress 0.05692507 
## Run 309 stress 0.05165248 
## Run 310 stress 0.05356859 
## Run 311 stress 0.05165244 
## Run 312 stress 0.0602173 
## Run 313 stress 0.0473385 
## ... Procrustes: rmse 0.05310294  max resid 0.1479574 
## Run 314 stress 0.05192136 
## Run 315 stress 0.05794562 
## Run 316 stress 0.04976577 
## Run 317 stress 0.05356859 
## Run 318 stress 0.0583246 
## Run 319 stress 0.0473385 
## ... Procrustes: rmse 0.05310341  max resid 0.1479589 
## Run 320 stress 0.0543441 
## Run 321 stress 0.05440161 
## Run 322 stress 0.04704142 
## ... Procrustes: rmse 5.536634e-06  max resid 1.147013e-05 
## ... Similar to previous best
## Run 323 stress 0.04733851 
## ... Procrustes: rmse 0.05310171  max resid 0.1479702 
## Run 324 stress 0.05438257 
## Run 325 stress 0.04733854 
## ... Procrustes: rmse 0.05309881  max resid 0.1479816 
## Run 326 stress 0.05502839 
## Run 327 stress 0.04704142 
## ... Procrustes: rmse 5.996537e-06  max resid 9.444496e-06 
## ... Similar to previous best
## Run 328 stress 0.04733849 
## ... Procrustes: rmse 0.05310395  max resid 0.1479553 
## Run 329 stress 0.05440158 
## Run 330 stress 0.06021729 
## Run 331 stress 0.06696171 
## Run 332 stress 0.05820957 
## Run 333 stress 0.05165243 
## Run 334 stress 0.05120145 
## Run 335 stress 0.05368172 
## Run 336 stress 0.0543441 
## Run 337 stress 0.04704142 
## ... Procrustes: rmse 2.257814e-05  max resid 3.6352e-05 
## ... Similar to previous best
## Run 338 stress 0.05434414 
## Run 339 stress 0.05165244 
## Run 340 stress 0.05356861 
## Run 341 stress 0.05440158 
## Run 342 stress 0.05683291 
## Run 343 stress 0.05593291 
## Run 344 stress 0.0528927 
## Run 345 stress 0.05794558 
## Run 346 stress 0.05794561 
## Run 347 stress 0.0527035 
## Run 348 stress 0.05165245 
## Run 349 stress 0.05692532 
## Run 350 stress 0.06021729 
## Run 351 stress 0.05289269 
## Run 352 stress 0.05368171 
## Run 353 stress 0.0544016 
## Run 354 stress 0.04733846 
## ... Procrustes: rmse 0.05312075  max resid 0.1478567 
## Run 355 stress 0.05289268 
## Run 356 stress 0.05794556 
## Run 357 stress 0.05926582 
## Run 358 stress 0.0536817 
## Run 359 stress 0.05440161 
## Run 360 stress 0.04976576 
## Run 361 stress 0.04704142 
## ... Procrustes: rmse 1.381479e-05  max resid 2.738537e-05 
## ... Similar to previous best
## Run 362 stress 0.05438256 
## Run 363 stress 0.0512279 
## Run 364 stress 0.04976579 
## Run 365 stress 0.05440171 
## Run 366 stress 0.04704142 
## ... Procrustes: rmse 3.863332e-06  max resid 6.535122e-06 
## ... Similar to previous best
## Run 367 stress 0.05356861 
## Run 368 stress 0.05270351 
## Run 369 stress 0.05120122 
## Run 370 stress 0.05289269 
## Run 371 stress 0.0497656 
## Run 372 stress 0.04733846 
## ... Procrustes: rmse 0.05310901  max resid 0.1479164 
## Run 373 stress 0.04976565 
## Run 374 stress 0.06901331 
## Run 375 stress 0.0543441 
## Run 376 stress 0.05820931 
## Run 377 stress 0.0527035 
## Run 378 stress 0.05165246 
## Run 379 stress 0.05692524 
## Run 380 stress 0.04733848 
## ... Procrustes: rmse 0.05310768  max resid 0.1479343 
## Run 381 stress 0.04704145 
## ... Procrustes: rmse 7.189678e-05  max resid 0.00018073 
## ... Similar to previous best
## Run 382 stress 0.04976566 
## Run 383 stress 0.06374902 
## Run 384 stress 0.05270349 
## Run 385 stress 0.04733851 
## ... Procrustes: rmse 0.05310244  max resid 0.147966 
## Run 386 stress 0.05850689 
## Run 387 stress 0.05165244 
## Run 388 stress 0.05670742 
## Run 389 stress 0.04976567 
## Run 390 stress 0.05434417 
## Run 391 stress 0.04704142 
## ... Procrustes: rmse 6.622866e-06  max resid 1.165996e-05 
## ... Similar to previous best
## Run 392 stress 0.04704142 
## ... Procrustes: rmse 1.922331e-05  max resid 4.87719e-05 
## ... Similar to previous best
## Run 393 stress 0.06492703 
## Run 394 stress 0.04976571 
## Run 395 stress 0.05593293 
## Run 396 stress 0.0512014 
## Run 397 stress 0.05270349 
## Run 398 stress 0.05733805 
## Run 399 stress 0.04976569 
## Run 400 stress 0.05733799 
## Run 401 stress 0.05289268 
## Run 402 stress 0.05120163 
## Run 403 stress 0.05683307 
## Run 404 stress 0.04976565 
## Run 405 stress 0.05192135 
## Run 406 stress 0.05438259 
## Run 407 stress 0.05502839 
## Run 408 stress 0.05692504 
## Run 409 stress 0.05368172 
## Run 410 stress 0.05289268 
## Run 411 stress 0.05120106 
## Run 412 stress 0.04733849 
## ... Procrustes: rmse 0.05310456  max resid 0.1479534 
## Run 413 stress 0.05356862 
## Run 414 stress 0.04733845 
## ... Procrustes: rmse 0.05311238  max resid 0.1479085 
## Run 415 stress 0.05165246 
## Run 416 stress 0.05692516 
## Run 417 stress 0.05593306 
## Run 418 stress 0.05820954 
## Run 419 stress 0.05683303 
## Run 420 stress 0.05165245 
## Run 421 stress 0.06492713 
## Run 422 stress 0.04733855 
## ... Procrustes: rmse 0.05312905  max resid 0.1477763 
## Run 423 stress 0.04733855 
## ... Procrustes: rmse 0.05310098  max resid 0.1479816 
## Run 424 stress 0.04704143 
## ... Procrustes: rmse 3.283998e-05  max resid 5.449192e-05 
## ... Similar to previous best
## Run 425 stress 0.06492706 
## Run 426 stress 0.04976573 
## Run 427 stress 0.05165247 
## Run 428 stress 0.05794558 
## Run 429 stress 0.05502839 
## Run 430 stress 0.04976562 
## Run 431 stress 0.04976567 
## Run 432 stress 0.05670743 
## Run 433 stress 0.06492703 
## Run 434 stress 0.04704142 
## ... Procrustes: rmse 7.715039e-06  max resid 1.244825e-05 
## ... Similar to previous best
## Run 435 stress 0.04976572 
## Run 436 stress 0.04733845 
## ... Procrustes: rmse 0.05311173  max resid 0.1479118 
## Run 437 stress 0.05692516 
## Run 438 stress 0.05438253 
## Run 439 stress 0.04976567 
## Run 440 stress 0.05438253 
## Run 441 stress 0.05794561 
## Run 442 stress 0.04976567 
## Run 443 stress 0.04704142 
## ... Procrustes: rmse 1.20102e-05  max resid 1.950588e-05 
## ... Similar to previous best
## Run 444 stress 0.05683273 
## Run 445 stress 0.05670746 
## Run 446 stress 0.0527035 
## Run 447 stress 0.04733851 
## ... Procrustes: rmse 0.05312376  max resid 0.1477947 
## Run 448 stress 0.05683291 
## Run 449 stress 0.04704142 
## ... Procrustes: rmse 9.491116e-06  max resid 1.502651e-05 
## ... Similar to previous best
## Run 450 stress 0.05289268 
## Run 451 stress 0.04976568 
## Run 452 stress 0.04733849 
## ... Procrustes: rmse 0.05310556  max resid 0.1479472 
## Run 453 stress 0.04976567 
## Run 454 stress 0.0543441 
## Run 455 stress 0.04704142 
## ... Procrustes: rmse 1.79855e-05  max resid 4.152199e-05 
## ... Similar to previous best
## Run 456 stress 0.05120142 
## Run 457 stress 0.05120085 
## Run 458 stress 0.06374908 
## Run 459 stress 0.04976567 
## Run 460 stress 0.05692525 
## Run 461 stress 0.0536817 
## Run 462 stress 0.04704143 
## ... Procrustes: rmse 3.996028e-05  max resid 9.200864e-05 
## ... Similar to previous best
## Run 463 stress 0.05670752 
## Run 464 stress 0.05438258 
## Run 465 stress 0.04704142 
## ... Procrustes: rmse 5.262758e-06  max resid 1.148249e-05 
## ... Similar to previous best
## Run 466 stress 0.04733855 
## ... Procrustes: rmse 0.05309954  max resid 0.1479847 
## Run 467 stress 0.04976574 
## Run 468 stress 0.06767352 
## Run 469 stress 0.05122779 
## Run 470 stress 0.0473385 
## ... Procrustes: rmse 0.05312558  max resid 0.1478095 
## Run 471 stress 0.04976578 
## Run 472 stress 0.05434411 
## Run 473 stress 0.05605322 
## Run 474 stress 0.05434412 
## Run 475 stress 0.05967094 
## Run 476 stress 0.04733851 
## ... Procrustes: rmse 0.0531015  max resid 0.1479698 
## Run 477 stress 0.05165245 
## Run 478 stress 0.04976563 
## Run 479 stress 0.05165245 
## Run 480 stress 0.04733853 
## ... Procrustes: rmse 0.05310031  max resid 0.1479804 
## Run 481 stress 0.0544016 
## Run 482 stress 0.04733857 
## ... Procrustes: rmse 0.05309643  max resid 0.147997 
## Run 483 stress 0.05438253 
## Run 484 stress 0.0544016 
## Run 485 stress 0.04976565 
## Run 486 stress 0.05670747 
## Run 487 stress 0.05794566 
## Run 488 stress 0.05670742 
## Run 489 stress 0.05438253 
## Run 490 stress 0.04976568 
## Run 491 stress 0.04733847 
## ... Procrustes: rmse 0.05310721  max resid 0.1479381 
## Run 492 stress 0.04704142 
## ... Procrustes: rmse 1.405424e-05  max resid 3.454625e-05 
## ... Similar to previous best
## Run 493 stress 0.04733853 
## ... Procrustes: rmse 0.05309968  max resid 0.1479793 
## Run 494 stress 0.04704143 
## ... Procrustes: rmse 2.482727e-05  max resid 4.132775e-05 
## ... Similar to previous best
## Run 495 stress 0.05438253 
## Run 496 stress 0.05192132 
## Run 497 stress 0.04733849 
## ... Procrustes: rmse 0.0531207  max resid 0.1478581 
## Run 498 stress 0.04704143 
## ... Procrustes: rmse 3.457126e-05  max resid 6.135708e-05 
## ... Similar to previous best
## Run 499 stress 0.05820942 
## Run 500 stress 0.04976569 
## *** Best solution repeated 40 times

Determine stratification homogeneity using phylogenetic distances

We use betadisper to determine homogeneity of the phylogenetic distances based on the stratification category. Is the dispersion of phylogenetic distances similar within stratification categories?

### Stratification
pd_bd <- betadisper(pd_dist, stratification_group)
anova(pd_bd)
## Analysis of Variance Table
## 
## Response: Distances
##           Df   Sum Sq   Mean Sq F value  Pr(>F)  
## Groups     2 0.041384 0.0206918  2.8636 0.08185 .
## Residuals 19 0.137291 0.0072258                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
permutest(pd_bd, pairwise = TRUE)
## 
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
## 
## Response: Distances
##           Df   Sum Sq   Mean Sq      F N.Perm Pr(>F)  
## Groups     2 0.041384 0.0206918 2.8636    999  0.075 .
## Residuals 19 0.137291 0.0072258                       
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
##               Mixed    Ocean Stratified
## Mixed               0.792000      0.037
## Ocean      0.785767               0.117
## Stratified 0.045423 0.120915
(pd_bd.HSD <- TukeyHSD(pd_bd))
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                         diff        lwr        upr     p adj
## Ocean-Mixed       0.01016167 -0.1064651 0.12678849 0.9733893
## Stratified-Mixed -0.08541898 -0.1933944 0.02255647 0.1370417
## Stratified-Ocean -0.09558066 -0.2122075 0.02104616 0.1203813
boxplot(pd_bd)

Determine stratification dissimilarity using phylogenetic distances

We use adonis to determine if dissimilarities of species phylogenetic distances by stratification categories are significant and how much of the variation is explained by phylogenetic dissimilarities.

### Stratification
pd_pms <- adonis2(pd_dist ~ env[-20,19], permutations = 999)
pd_pms
## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
## 
## adonis2(formula = pd_dist ~ env[-20, 19], permutations = 999)
##              Df SumOfSqs      R2      F Pr(>F)    
## env[-20, 19]  2   1.8501 0.39099 6.0992  0.001 ***
## Residual     19   2.8817 0.60901                  
## Total        21   4.7317 1.00000                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
# By stratification
pd_pms_pair <- pairwise.adonis(pd_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
pd_pms_pair
##                 pairs Df SumsOfSqs  F.Model        R2 p.value p.adjusted sig
## 1 Stratified vs Mixed  1 1.2941262 9.411578 0.4020053   0.002      0.006   *
## 2 Stratified vs Ocean  1 1.1732986 8.193920 0.4057617   0.002      0.006   *
## 3      Mixed vs Ocean  1 0.2549694 1.443238 0.1073579   0.122      0.366

Envfit environmental influence on phylogenetic distances

We use envfit to determine significantly correlated environmental variables to our phylogenetic NMDS. We will use these results, if significant, in our figure.

### Environmental
# All sites for figure
pde_ef <- envfit(pde_NMDS, env[-c(9,16,18,20),c(34,36)], permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pde_ef
## 
## ***VECTORS
## 
##       NMDS1    NMDS2     r2 Pr(>r)    
## S   0.96421  0.26514 0.7072  0.012 *  
## pH  0.99017 -0.13990 0.8530  0.001 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
pde_efp <- p.adjust.envfit(pde_ef)
## Adjustment of significance by bonferroni method
pde_efp
## 
## ***VECTORS
## 
##       NMDS1    NMDS2     r2 Pr(>r)   
## S   0.96421  0.26514 0.7072  0.024 * 
## pH  0.99017 -0.13990 0.8530  0.002 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# All sites by stratification
pdea_ef <- envfit(pde_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pdea_ef
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2 Pr(>r)    
## temperature_median -0.73732 -0.67555 0.0772  0.632    
## salinity_median     0.96421  0.26514 0.7072  0.014 *  
## oxygen_median       0.56896 -0.82236 0.6630  0.188    
## pH_median           0.99017 -0.13990 0.8530  0.001 ***
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
pdea_efp <- p.adjust.envfit(pdea_ef)
## Adjustment of significance by bonferroni method
pdea_efp
## 
## ***VECTORS
## 
##                       NMDS1    NMDS2     r2 Pr(>r)   
## temperature_median -0.73732 -0.67555 0.0772  1.000   
## salinity_median     0.96421  0.26514 0.7072  0.056 . 
## oxygen_median       0.56896 -0.82236 0.6630  0.752   
## pH_median           0.99017 -0.13990 0.8530  0.004 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
pdems_ef <- envfit(pdems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(6,10)], permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdems_ef
## 
## ***VECTORS
## 
##                   NMDS1   NMDS2     r2 Pr(>r)   
## salinity_median 0.86008 0.51016 0.6978  0.016 * 
## pH_median       0.99083 0.13515 0.8247  0.004 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
pdems_efp <- p.adjust.envfit(pdems_ef)
## Adjustment of significance by bonferroni method
pdems_efp
## 
## ***VECTORS
## 
##                   NMDS1   NMDS2     r2 Pr(>r)   
## salinity_median 0.86008 0.51016 0.6978  0.032 * 
## pH_median       0.99083 0.13515 0.8247  0.008 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
pdeom_ef <- envfit(pdeom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(8,10)], permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
pdeom_ef
## 
## ***VECTORS
## 
##                  NMDS1    NMDS2     r2 Pr(>r)  
## oxygen_median  0.93268  0.36070 0.7964  0.016 *
## pH_median      0.95281 -0.30357 0.7303  0.015 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
pdeom_efp <- p.adjust.envfit(pdeom_ef)
## Adjustment of significance by bonferroni method
pdeom_efp
## 
## ***VECTORS
## 
##                  NMDS1    NMDS2     r2 Pr(>r)  
## oxygen_median  0.93268  0.36070 0.7964  0.032 *
## pH_median      0.95281 -0.30357 0.7303  0.030 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
pdeso_ef <- envfit(pdeso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(2,6,8,10)], permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
pdeso_ef
## 
## ***VECTORS
## 
##                         NMDS1      NMDS2     r2 Pr(>r)
## temperature_median -0.0005766  1.0000000 0.0393  0.748
## salinity_median     0.0029113 -1.0000000 0.4885  0.732
## oxygen_median       0.0028004 -1.0000000 0.7208  0.551
## pH_median           0.0077581 -0.9999700 0.6695  0.848
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
pdeso_efp <- p.adjust.envfit(pdeso_ef)
## Adjustment of significance by bonferroni method
pdeso_efp
## 
## ***VECTORS
## 
##                         NMDS1      NMDS2     r2 Pr(>r)
## temperature_median -0.0005766  1.0000000 0.0393      1
## salinity_median     0.0029113 -1.0000000 0.4885      1
## oxygen_median       0.0028004 -1.0000000 0.7208      1
## pH_median           0.0077581 -0.9999700 0.6695      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes
pds_ef <- envfit(pds_NMDS, env[c(1:2,4,5,12,17,21:22),c(8)], permutations = 999, na.rm = TRUE)
pds_ef
## 
## ***VECTORS
## 
##        NMDS1   NMDS2    r2 Pr(>r)  
## [1,] 0.83740 0.54659 0.745   0.04 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999
pds_efp <- p.adjust.envfit(pds_ef)
## Adjustment of significance by bonferroni method
pds_efp
## 
## ***VECTORS
## 
##        NMDS1   NMDS2    r2 Pr(>r)  
## [1,] 0.83740 0.54659 0.745   0.04 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999
### Biogeographic
# All sites for figure
pdb_ef <- envfit(pdb_NMDS, env[-c(8,20),c(40)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
pdb_ef
## 
## ***VECTORS
## 
##        NMDS1   NMDS2     r2  Pr(>r)  
## [1,] -0.9217  0.3879 0.5898 0.05994 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdb_efp <- p.adjust.envfit(pdb_ef)
## Adjustment of significance by bonferroni method
pdb_efp
## 
## ***VECTORS
## 
##        NMDS1   NMDS2     r2  Pr(>r)  
## [1,] -0.9217  0.3879 0.5898 0.05994 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
pdba_ef <- envfit(pdb_NMDS, env[-c(8,20),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
pdba_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2  Pr(>r)  
## volume_m3_w_chemocline      0.30704 -0.95170 0.2742 0.14086  
## volume_m3                   0.29232 -0.95632 0.2674 0.14286  
## surface_area_m2             0.24090 -0.97055 0.3746 0.17383  
## distance_to_ocean_min_m    -0.92170  0.38790 0.5898 0.05195 .
## distance_to_ocean_mean_m   -0.76136  0.64833 0.5394 0.46054  
## distance_to_ocean_median_m -0.76959  0.63854 0.5307 0.47552  
## tidal_lag_time_minutes     -0.63885  0.76933 0.6134 0.33367  
## tidal_efficiency            0.63776 -0.77023 0.6175 0.23976  
## perimeter_fromSat           0.31940 -0.94762 0.2854 0.41658  
## max_depth                  -0.30952 -0.95089 0.0695 0.96803  
## logArea                     0.24319 -0.96998 0.1775 0.41259  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdba_efp <- p.adjust.envfit(pdba_ef)
## Adjustment of significance by bonferroni method
pdba_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.30704 -0.95170 0.2742 1.0000
## volume_m3                   0.29232 -0.95632 0.2674 1.0000
## surface_area_m2             0.24090 -0.97055 0.3746 1.0000
## distance_to_ocean_min_m    -0.92170  0.38790 0.5898 0.5714
## distance_to_ocean_mean_m   -0.76136  0.64833 0.5394 1.0000
## distance_to_ocean_median_m -0.76959  0.63854 0.5307 1.0000
## tidal_lag_time_minutes     -0.63885  0.76933 0.6134 1.0000
## tidal_efficiency            0.63776 -0.77023 0.6175 1.0000
## perimeter_fromSat           0.31940 -0.94762 0.2854 1.0000
## max_depth                  -0.30952 -0.95089 0.0695 1.0000
## logArea                     0.24319 -0.96998 0.1775 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
pdbms_ef <- envfit(pdbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
pdbms_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2  Pr(>r)  
## volume_m3_w_chemocline     -0.06129  0.99812 0.0721 0.81019  
## volume_m3                  -0.49384  0.86956 0.1344 0.95804  
## surface_area_m2            -0.34955  0.93692 0.1072 0.92308  
## distance_to_ocean_min_m    -0.83989  0.54276 0.5146 0.08192 .
## distance_to_ocean_mean_m   -0.59315  0.80509 0.4516 0.38561  
## distance_to_ocean_median_m -0.58208  0.81313 0.4509 0.36563  
## tidal_lag_time_minutes     -0.39659  0.91799 0.6069 0.19780  
## tidal_efficiency            0.40487 -0.91437 0.6010 0.17582  
## perimeter_fromSat          -0.09999  0.99499 0.0799 0.78721  
## max_depth                  -0.56723 -0.82356 0.1064 0.95704  
## logArea                    -0.52597  0.85050 0.0070 0.99500  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdbms_efp <- p.adjust.envfit(pdbms_ef)
## Adjustment of significance by bonferroni method
pdbms_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline     -0.06129  0.99812 0.0721 1.0000
## volume_m3                  -0.49384  0.86956 0.1344 1.0000
## surface_area_m2            -0.34955  0.93692 0.1072 1.0000
## distance_to_ocean_min_m    -0.83989  0.54276 0.5146 0.9011
## distance_to_ocean_mean_m   -0.59315  0.80509 0.4516 1.0000
## distance_to_ocean_median_m -0.58208  0.81313 0.4509 1.0000
## tidal_lag_time_minutes     -0.39659  0.91799 0.6069 1.0000
## tidal_efficiency            0.40487 -0.91437 0.6010 1.0000
## perimeter_fromSat          -0.09999  0.99499 0.0799 1.0000
## max_depth                  -0.56723 -0.82356 0.1064 1.0000
## logArea                    -0.52597  0.85050 0.0070 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
pdbom_ef <- envfit(pdbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(28,31)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
pdbom_ef
## 
## ***VECTORS
## 
##                           NMDS1    NMDS2     r2   Pr(>r)   
## tidal_lag_time_minutes -0.34048 -0.94025 0.5044 0.017982 * 
## max_depth               0.87692 -0.48064 0.6324 0.004995 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdbom_efp <- p.adjust.envfit(pdbom_ef)
## Adjustment of significance by bonferroni method
pdbom_efp
## 
## ***VECTORS
## 
##                           NMDS1    NMDS2     r2  Pr(>r)   
## tidal_lag_time_minutes -0.34048 -0.94025 0.5044 0.03596 * 
## max_depth               0.87692 -0.48064 0.6324 0.00999 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
pdbso_ef <- envfit(pdbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdbso_ef
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2  Pr(>r)  
## volume_m3_w_chemocline      0.32434  0.94594 0.4850 0.03497 *
## volume_m3                   0.31780  0.94816 0.4742 0.04695 *
## surface_area_m2             0.30238  0.95319 0.6099 0.04396 *
## distance_to_ocean_min_m    -0.99834  0.05762 0.6213 0.28072  
## distance_to_ocean_mean_m   -0.89864  0.43868 0.6226 0.59740  
## distance_to_ocean_median_m -0.87457  0.48490 0.6154 0.59041  
## tidal_lag_time_minutes     -0.99917  0.04072 0.7125 0.92907  
## tidal_efficiency            0.93914 -0.34354 0.7835 0.59840  
## perimeter_fromSat           0.38918  0.92116 0.5288 0.12488  
## max_depth                  -0.16213  0.98677 0.1849 0.55944  
## logArea                     0.26902  0.96314 0.4195 0.11688  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdbso_efp <- p.adjust.envfit(pdbso_ef)
## Adjustment of significance by bonferroni method
pdbso_efp
## 
## ***VECTORS
## 
##                               NMDS1    NMDS2     r2 Pr(>r)
## volume_m3_w_chemocline      0.32434  0.94594 0.4850 0.3846
## volume_m3                   0.31780  0.94816 0.4742 0.5165
## surface_area_m2             0.30238  0.95319 0.6099 0.4835
## distance_to_ocean_min_m    -0.99834  0.05762 0.6213 1.0000
## distance_to_ocean_mean_m   -0.89864  0.43868 0.6226 1.0000
## distance_to_ocean_median_m -0.87457  0.48490 0.6154 1.0000
## tidal_lag_time_minutes     -0.99917  0.04072 0.7125 1.0000
## tidal_efficiency            0.93914 -0.34354 0.7835 1.0000
## perimeter_fromSat           0.38918  0.92116 0.5288 1.0000
## max_depth                  -0.16213  0.98677 0.1849 1.0000
## logArea                     0.26902  0.96314 0.4195 1.0000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
### Traits
# All sites for figure
pdt_ef <- envfit(pd_NMDS, FD_total_env[-20,c(58,64)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
pdt_ef
## 
## ***VECTORS
## 
##      NMDS1    NMDS2     r2   Pr(>r)   
## T -0.71489  0.69924 0.7028 0.003996 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##        NMDS1   NMDS2
## EC1b -0.3816 -0.0269
## EC2g -0.4873 -0.0630
## EC3n  0.0965  0.0100
## 
## Goodness of fit:
##       r2   Pr(>r)   
## EC 0.432 0.003996 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdt_efp <- p.adjust.envfit(pdt_ef)
## Adjustment of significance by bonferroni method
pdt_efp
## 
## ***VECTORS
## 
##      NMDS1    NMDS2     r2   Pr(>r)   
## T -0.71489  0.69924 0.7028 0.007992 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##        NMDS1   NMDS2
## EC1b -0.3816 -0.0269
## EC2g -0.4873 -0.0630
## EC3n  0.0965  0.0100
## 
## Goodness of fit:
##       r2   Pr(>r)   
## EC 0.432 0.007992 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
pdta_ef <- envfit(pd_NMDS, FD_total_env[-20,c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
pdta_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2   Pr(>r)   
## MaxLengthTL       0.19595  0.98061 0.2103 0.058941 . 
## Troph            -0.71489  0.69924 0.7028 0.005994 **
## DepthMin         -0.10558 -0.99441 0.0497 0.173826   
## DepthMax          0.74849  0.66314 0.2306 0.180819   
## TempPrefMin       0.56814 -0.82293 0.1991 0.377622   
## TempPrefMax      -0.39506 -0.91865 0.0052 0.810190   
## Weight            0.08261  0.99658 0.0847 0.208791   
## CaudalFinLength  -0.22745  0.97379 0.0329 0.436563   
## DorsalSpinesMean  0.97324 -0.22979 0.5299 0.038961 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.0491 -0.0887
## BodyShapeI3f         0.1007  0.0309
## BodyShapeI4e        -0.4143 -0.0493
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -0.3899 -0.0284
## OperculumPresentyes  0.0866  0.0063
## FeedingPathb         0.0382  0.0027
## FeedingPathp        -0.3816 -0.0269
## RepGuild11b         -0.3816 -0.0269
## RepGuild12g         -0.4873 -0.0630
## RepGuild13n          0.0965  0.0100
## RepGuild22eb        -0.3955 -0.0179
## RepGuild23n         -0.4873 -0.0630
## RepGuild26s          0.0721  0.0076
## ParentalCare3p      -0.3755 -0.0197
## ParentalCare4n       0.1408  0.0074
## WaterPref1s          0.1177  0.0096
## WaterPref3a         -0.4003 -0.0327
## 
## Goodness of fit:
##                      r2   Pr(>r)   
## BodyShapeI       0.4083 0.057942 . 
## DemersPelag      0.0000 1.000000   
## OperculumPresent 0.3415 0.146853   
## FeedingPath      0.1471 0.376623   
## RepGuild1        0.4320 0.005994 **
## RepGuild2        0.3380 0.006993 **
## ParentalCare     0.5331 0.129870   
## WaterPref        0.4770 0.048951 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdta_efp <- p.adjust.envfit(pdta_ef)
## Adjustment of significance by bonferroni method
pdta_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.19595  0.98061 0.2103 1.0000
## Troph            -0.71489  0.69924 0.7028 0.1019
## DepthMin         -0.10558 -0.99441 0.0497 1.0000
## DepthMax          0.74849  0.66314 0.2306 1.0000
## TempPrefMin       0.56814 -0.82293 0.1991 1.0000
## TempPrefMax      -0.39506 -0.91865 0.0052 1.0000
## Weight            0.08261  0.99658 0.0847 1.0000
## CaudalFinLength  -0.22745  0.97379 0.0329 1.0000
## DorsalSpinesMean  0.97324 -0.22979 0.5299 0.6623
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.0491 -0.0887
## BodyShapeI3f         0.1007  0.0309
## BodyShapeI4e        -0.4143 -0.0493
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -0.3899 -0.0284
## OperculumPresentyes  0.0866  0.0063
## FeedingPathb         0.0382  0.0027
## FeedingPathp        -0.3816 -0.0269
## RepGuild11b         -0.3816 -0.0269
## RepGuild12g         -0.4873 -0.0630
## RepGuild13n          0.0965  0.0100
## RepGuild22eb        -0.3955 -0.0179
## RepGuild23n         -0.4873 -0.0630
## RepGuild26s          0.0721  0.0076
## ParentalCare3p      -0.3755 -0.0197
## ParentalCare4n       0.1408  0.0074
## WaterPref1s          0.1177  0.0096
## WaterPref3a         -0.4003 -0.0327
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.4083 0.9850
## DemersPelag      0.0000 1.0000
## OperculumPresent 0.3415 1.0000
## FeedingPath      0.1471 1.0000
## RepGuild1        0.4320 0.1019
## RepGuild2        0.3380 0.1189
## ParentalCare     0.5331 1.0000
## WaterPref        0.4770 0.8322
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Mixed and stratified lakes
pdtms_ef <- envfit(pdms_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(18,19)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_ef
## 
## ***FACTORS:
## 
## Centroids:
##                NMDS1   NMDS2
## RepGuild11b  -0.3099 -0.0094
## RepGuild12g  -0.4096 -0.0754
## RepGuild13n   0.1199  0.0141
## RepGuild22eb -0.3167 -0.0114
## RepGuild23n  -0.4096 -0.0754
## RepGuild26s   0.0874  0.0125
## 
## Goodness of fit:
##               r2   Pr(>r)   
## RepGuild1 0.4570 0.002997 **
## RepGuild2 0.3511 0.014985 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdtms_efp <- p.adjust.envfit(pdtms_ef)
## Adjustment of significance by bonferroni method
pdtms_efp
## 
## ***FACTORS:
## 
## Centroids:
##                NMDS1   NMDS2
## RepGuild11b  -0.3099 -0.0094
## RepGuild12g  -0.4096 -0.0754
## RepGuild13n   0.1199  0.0141
## RepGuild22eb -0.3167 -0.0114
## RepGuild23n  -0.4096 -0.0754
## RepGuild26s   0.0874  0.0125
## 
## Goodness of fit:
##               r2   Pr(>r)   
## RepGuild1 0.4570 0.005994 **
## RepGuild2 0.3511 0.029970 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
pdtom_ef <- envfit(pdom_NMDS, FD_total_env[c(3,6:11,13:16,18:19,23),c(9)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
pdtom_ef
## 
## ***VECTORS
## 
##         NMDS1    NMDS2   r2   Pr(>r)   
## [1,] -0.67324  0.73943 0.56 0.007992 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdtom_efp <- p.adjust.envfit(pdtom_ef)
## Adjustment of significance by bonferroni method
pdtom_efp
## 
## ***VECTORS
## 
##         NMDS1    NMDS2   r2   Pr(>r)   
## [1,] -0.67324  0.73943 0.56 0.007992 **
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
pdtso_ef <- envfit(pdso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(18,19)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_ef
## 
## ***FACTORS:
## 
## Centroids:
##                NMDS1   NMDS2
## RepGuild11b  -0.2537 -0.0082
## RepGuild12g  -0.3650  0.0291
## RepGuild13n   0.1237 -0.0042
## RepGuild22eb -0.2680 -0.0175
## RepGuild23n  -0.3650  0.0291
## RepGuild26s   0.0907 -0.0037
## 
## Goodness of fit:
##               r2   Pr(>r)   
## RepGuild1 0.4085 0.005994 **
## RepGuild2 0.3199 0.012987 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
pdtso_efp <- p.adjust.envfit(pdtso_ef)
## Adjustment of significance by bonferroni method
pdtso_efp
## 
## ***FACTORS:
## 
## Centroids:
##                NMDS1   NMDS2
## RepGuild11b  -0.2537 -0.0082
## RepGuild12g  -0.3650  0.0291
## RepGuild13n   0.1237 -0.0042
## RepGuild22eb -0.2680 -0.0175
## RepGuild23n  -0.3650  0.0291
## RepGuild26s   0.0907 -0.0037
## 
## Goodness of fit:
##               r2  Pr(>r)  
## RepGuild1 0.4085 0.01199 *
## RepGuild2 0.3199 0.02597 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000

Phylogenetic mantel tests

We used mantel tests to determine significance between the phylogenetic and environmental distance matrices.

### Environmental
# All sites 
enve_dist_s <- dist(scaled_env[-c(9,16,18,20),c(2)], method = "euclidean")
pdea_mant_s <- mantel(pde_dist, enve_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pdea_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pde_dist, ydis = enve_dist_s, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.5397 
##       Significance: 0.006 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.445 0.479 0.500 0.523 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
enve_dist_p <- dist(scaled_env[-c(9,16,18,20),c(4)], method = "euclidean")
pdea_mant_p <- mantel(pde_dist, enve_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pdea_mant_p
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pde_dist, ydis = enve_dist_p, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.7157 
##       Significance: 0.001 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.513 0.553 0.577 0.610 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
pdea_mant_pv <- rbind(pdea_mant_s$signif, pdea_mant_p$signif)
pdea_mant_pv <- pdea_mant_pv[,1]
pdea_mant_pv <- p.adjust(pdea_mant_pv, method = "bonferroni")
pdea_mant_pv
## [1] 0.012 0.002
# Mixed and stratified lakes
envems_dist_s <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2)], method = "euclidean")
pdems_mant_s <- mantel(pdems_dist, envems_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdems_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdems_dist, ydis = envems_dist_s, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4842 
##       Significance: 0.008 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.396 0.420 0.452 0.473 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envems_dist_p <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(4)], method = "euclidean")
pdems_mant_p <- mantel(pdems_dist, envems_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdems_mant_p
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdems_dist, ydis = envems_dist_p, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6732 
##       Significance: 0.002 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.436 0.473 0.512 0.538 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
pdems_mant_pv <- rbind(pdems_mant_s$signif, pdems_mant_p$signif)
pdems_mant_pv <- pdems_mant_pv[,1]
pdems_mant_pv <- p.adjust(pdems_mant_pv, method = "bonferroni")
pdems_mant_pv
## [1] 0.016 0.004
# Ocean sites and mixed lakes
enveom_dist_s <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(2)], method = "euclidean")
pdeom_mant_s <- mantel(pdeom_dist, enveom_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
pdeom_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdeom_dist, ydis = enveom_dist_s, method = "spearman",      permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15,          19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5084 
##       Significance: 0.015 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.309 0.386 0.462 0.520 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
enveom_dist_p <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(4)], method = "euclidean")
pdeom_mant_p <- mantel(pdeom_dist, enveom_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
pdeom_mant_p
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdeom_dist, ydis = enveom_dist_p, method = "spearman",      permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15,          19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4535 
##       Significance: 0.016 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.272 0.349 0.407 0.502 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
pdeom_mant_pv <- rbind(pdeom_mant_s$signif, pdeom_mant_p$signif)
pdeom_mant_pv <- pdeom_mant_pv[,1]
pdeom_mant_pv <- p.adjust(pdeom_mant_pv, method = "bonferroni")
pdeom_mant_pv
## [1] 0.030 0.032
# Stratified lakes and ocean sites
enveso_dist_s <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2)], method = "euclidean")
pdeso_mant_s <- mantel(pdeso_dist, enveso_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
pdeso_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdeso_dist, ydis = enveso_dist_s, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17,          19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5084 
##       Significance: 0.025 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.421 0.467 0.502 0.526 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes
envs_dist <- dist(scaled_env[c(1:2,4,5,12,17,21:22),c(1:15)], method = "euclidean")
pds_mant <- mantel(pds_dist, envs_dist, method = "spearman", permutations = 999, na.rm = TRUE)
pds_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pds_dist, ydis = envs_dist, method = "spearman",      permutations = 999, na.rm = TRUE) 
## 
## Mantel statistic r: 0.1308 
##       Significance: 0.275 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.328 0.389 0.475 0.558 
## Permutation: free
## Number of permutations: 999
### Biogeographic
# All sites 
envb_dist <- dist(scaled_env[-c(8,20),c(5:15)], method = "euclidean")
pdb_mant <- mantel(pdb_dist, envb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
pdb_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdb_dist, ydis = envb_dist, method = "spearman",      permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3595 
##       Significance: 0.316 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.408 0.431 0.446 0.481 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:15)], method = "euclidean")
pdbms_mant <- mantel(pdbms_dist, envbms_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
pdbms_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdbms_dist, ydis = envbms_dist, method = "spearman",      permutations = 1000, strata = env[c(1:6, 10, 12:15, 17, 21:23),          19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2029 
##       Significance: 0.58242 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.372 0.420 0.447 0.503 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(6)], method = "euclidean")
pdbom_mant <- mantel(pdbom_dist, envbom_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
pdbom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdbom_dist, ydis = envbom_dist, method = "spearman",      permutations = 1000, strata = env[c(3, 6:7, 9:11, 13:16,          18:19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2984 
##       Significance: 0.033966 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.236 0.271 0.310 0.350 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:15)], method = "euclidean")
pdbso_mant <- mantel(pdbso_dist, envbso_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdbso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdbso_dist, ydis = envbso_dist, method = "spearman",      permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6341 
##       Significance: 0.23676 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.665 0.689 0.706 0.727 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
### Traits
# All sites 1,3,12:13,14:15
FDpd_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(1)]))
pdt_mant_s <- mantel(pd_dist, FDpd_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_s, method = "spearman",      permutations = 999, strata = env[-c(20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4615 
##       Significance: 0.001 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.313 0.348 0.372 0.401 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpd_dist_t <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(3)]))
pdt_mant_t <- mantel(pd_dist, FDpd_dist_t, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_t
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_t, method = "spearman",      permutations = 999, strata = env[-c(20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.4874 
##       Significance: 0.011 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.397 0.427 0.459 0.486 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpd_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(12:13)]))
pdt_mant_ec <- mantel(pd_dist, FDpd_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_ec
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_ec, method = "spearman",      permutations = 999, strata = env[-c(20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3755 
##       Significance: 0.004 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.264 0.297 0.328 0.351 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
FDpd_dist_es <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(14:15)]))
pdt_mant_es <- mantel(pd_dist, FDpd_dist_es, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_es
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_es, method = "spearman",      permutations = 999, strata = env[-c(20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3137 
##       Significance: 0.005 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.228 0.262 0.293 0.299 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjust p-values
pdt_mant_pv <- rbind(pdt_mant_s$signif, pdt_mant_t$signif, pdt_mant_ec$signif, pdt_mant_es$signif)
pdt_mant_pv <- pdt_mant_pv[,1]
pdt_mant_pv <- p.adjust(pdt_mant_pv, method = "bonferroni")
pdt_mant_pv
## [1] 0.004 0.044 0.016 0.020
# Mixed and stratified lakes 1,12:13,14:15
FDpdms_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1)]))
pdtms_mant_s <- mantel(pdms_dist, FDpdms_dist_s, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdms_dist, ydis = FDpdms_dist_s, method = "spearman",      permutations = 1000, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3773 
##       Significance: 0.00999 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.250 0.294 0.326 0.365 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
FDpdms_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(12:13)]))
pdtms_mant_ec <- mantel(pdms_dist, FDpdms_dist_ec, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_mant_ec
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdms_dist, ydis = FDpdms_dist_ec, method = "spearman",      permutations = 1000, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2809 
##       Significance: 0.001998 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.136 0.176 0.204 0.236 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
FDpdms_dist_es <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(14:15)]))
pdtms_mant_es <- mantel(pdms_dist, FDpdms_dist_es, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_mant_es
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdms_dist, ydis = FDpdms_dist_es, method = "spearman",      permutations = 1000, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2143 
##       Significance: 0.008991 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0845 0.1174 0.1619 0.1947 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Adjust p-values
pdtms_mant_pv <- rbind(pdtms_mant_s$signif, pdtms_mant_ec$signif, pdtms_mant_es$signif)
pdtms_mant_pv <- pdtms_mant_pv[,1]
pdtms_mant_pv <- p.adjust(pdtms_mant_pv, method = "bonferroni")
pdtms_mant_pv
## [1] 0.029970030 0.005994006 0.026973027
# Ocean sites and mixed lakes 1,2,6
FDpdom_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(1)]))
pdtom_mant_s <- mantel(pdom_dist, FDpdom_dist_s, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
pdtom_mant_s
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdom_dist, ydis = FDpdom_dist_s, method = "spearman",      permutations = 1000, strata = env[c(3, 6:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3449 
##       Significance: 0.006993 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.143 0.201 0.247 0.306 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
FDpdom_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(2)]))
pdtom_mant_l <- mantel(pdom_dist, FDpdom_dist_l, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
pdtom_mant_l
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdom_dist, ydis = FDpdom_dist_l, method = "spearman",      permutations = 1000, strata = env[c(3, 6:11, 13:16, 18:19,          23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2589 
##       Significance: 0.018981 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.116 0.171 0.233 0.295 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Adjust p-values
pdtom_mant_pv <- rbind(pdtom_mant_s$signif, pdtom_mant_l$signif)
pdtom_mant_pv <- pdtom_mant_pv[,1]
pdtom_mant_pv <- p.adjust(pdtom_mant_pv, method = "bonferroni")
pdtom_mant_pv
## [1] 0.01398601 0.03796204
# Stratified lakes and ocean sites 1,3,4,7,12:13,14:15
FDpdso_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(4)]))
pdtso_mant_dmin <- mantel(pdso_dist, FDpdso_dist_dmin, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_dmin
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_dmin, method = "spearman",      permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.6478 
##       Significance: 0.000999 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.507 0.526 0.547 0.565 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
FDpdso_dist_tmax <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(7)]))
pdtso_mant_tmax <- mantel(pdso_dist, FDpdso_dist_tmax, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_tmax
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_tmax, method = "spearman",      permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.117 
##       Significance: 0.001998 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0060 0.0312 0.0505 0.0779 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
FDpdso_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(12:13)]))
pdtso_mant_ec <- mantel(pdso_dist, FDpdso_dist_ec, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_ec
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_ec, method = "spearman",      permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1961 
##       Significance: 0.003996 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0679 0.0948 0.1257 0.1431 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
FDpdso_dist_es <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(14:15)]))
pdtso_mant_es <- mantel(pdso_dist, FDpdso_dist_es, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_es
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_es, method = "spearman",      permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1341 
##       Significance: 0.00999 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0176 0.0787 0.0821 0.1081 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Adjust p-values
pdtso_mant_pv <- rbind(pdtso_mant_dmin$signif, pdtso_mant_tmax$signif, pdtso_mant_ec$signif, pdtso_mant_es$signif)
pdtso_mant_pv <- pdtso_mant_pv[,1]
pdtso_mant_pv <- p.adjust(pdtso_mant_pv, method = "bonferroni")
pdtso_mant_pv
## [1] 0.003996004 0.007992008 0.015984016 0.039960040

Plot phylogenetic NMDS and envfit results

Includes a plot of correlated environmental variables

pd_NMDS_data.scores <- as.data.frame(scores(pd_NMDS))
pd_NMDS_data.scores$Stratification <- env[-c(20),19]
pd_NMDS_data.scores$Lakes <- env[-c(20),1]
pd_NMDS_data.scores$Stratification <- factor(pd_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))

pde_ef_coord_cont <- as.data.frame(scores(pde_ef, "vectors")) * ordiArrowMul(pde_ef)
# pdb_ef_coord_cont <- as.data.frame(scores(pdb_ef, "vectors")) * ordiArrowMul(pdb_ef)
# pdb_row_names <- c("minD")
# # Assign the new row names to the data frame
# pdb_ef_coord_cont <- data.frame(row.names = pdb_row_names, pdb_ef_coord_cont)

pd_ef_plot <- ggplot(data = pd_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
  geom_point(data = pd_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) + 
  geom_text_repel(data = pd_NMDS_data.scores, label = pd_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = pde_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD661D") +
  geom_text(data = pde_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "#CD661D", label = row.names(pde_ef_coord_cont), size = 7) + 
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
  #              data = pdb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#698B22") +
  # geom_text(data = pdb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
  #           color = "#698B22", label = row.names(pdb_ef_coord_cont), size = 7) +
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = .29, y = .22, size = 6, 
  #          label = paste("Stress: ", round(pd_NMDS$stress, digits = 2))) +
  labs(color = "Stratification")
pd_ef_plot <- pd_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
pd_ef_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/pd_ef_plot.png", pd_ef_plot, width = 8, height = 4, units = "in")

Boxplot of intradissimilarity heterogeneity

The dissimilarity between sites that share the same stratification.

pd_bd_dist <- pd_bd$distances
pd_bd_dist <- as.data.frame(pd_bd_dist)
pd_bd_dist$X <- row.names(pd_bd_dist)
pd_bd_dist_env <- merge(pd_bd_dist, env[-20,], by = "X", sort = F)

pd_bd_dist_env_plot <- ggplot(pd_bd_dist_env, aes(x = Stratification, y = pd_bd_dist, 
                                                  color = Stratification, fill = Stratification)) +
  geom_violin(alpha = 0.75, draw_quantiles = c(0.25, 0.5, 0.75)) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  scale_fill_viridis(alpha = 0.1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  guides(fill = "none", color = "none") +
  geom_jitter(shape = 21,
            size = 4,
            alpha = 0.75,
            width = 0.1) +
  theme_bw() +
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
    plot.background = element_blank(),
    panel.grid.major = element_blank(),
    panel.grid.minor = element_blank(),
    panel.border = element_blank(), axis.text = element_text(size = 22, color = "black"),
    axis.line = element_line(color = "black")) +
  ylab("Distance to Centroid") +
  labs(color = "Stratification", tag = "B")
pd_bd_dist_env_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/pd_bd_dist_env_plot.png", pd_bd_dist_env_plot, width = 8.25, height = 4.13, units = "in")

Plot phylogenetic NMDS and trait envfit results

Includes a plot of correlated trait variables

pdt_ef_coord_cont <- as.data.frame(scores(pdt_ef, "vectors")) * ordiArrowMul(pdt_ef)
pdt_ef_coord_cat = as.data.frame(scores(pdt_ef, "factors")) * ordiArrowMul(pdt_ef)

pdt_ef_plot <- ggplot(data = pd_NMDS_data.scores, aes(x = NMDS1, y = NMDS2)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
  geom_point(data = pd_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) + 
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = pdt_ef_coord_cont, size =1, alpha = 0.5, color = "#CD3333") +
  geom_text(data = pdt_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
            color = "#CD3333", label = row.names(pdt_ef_coord_cont)) + 
  geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
               data = pdt_ef_coord_cat, size =1, alpha = 0.5, color = "#8B6508") +
  geom_text(data = pdt_ef_coord_cat, aes(x = NMDS1, y = NMDS2), 
            color = "#8B6508", label = row.names(pdt_ef_coord_cat)) + 
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = .29, y = .22, size = 6, 
  #          label = paste("Stress: ", round(pd_NMDS$stress, digits = 2))) +
  labs(color = "Stratification")
## Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
## ℹ Please use `linewidth` instead.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
## generated.
pdt_ef_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/pdt_ef_plot.png", pdt_ef_plot, width = 8, height = 4, units = "in")

Environment/biogeography dissimilarity distances

### Environmental
# All sites
enve_dist <- dist(scaled_env[-c(9,16,18,20),c(2:4)], method = "euclidean")
# Mixed and stratified lakes
envems_dist <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2:4)], method = "euclidean")
# Ocean sites and mixed lakes
enveom_dist <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(2:4)], method = "euclidean")
# Stratified lakes and ocean sites
enveso_dist <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2:4)], method = "euclidean")

### Biogeographic
# All sites
envb_dist <- dist(scaled_env[-c(8,20),c(5:6,8,12:15)], method = "euclidean")
# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:6,8,12:15)], method = "euclidean")
# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(5:6,8,12:15)], method = "euclidean")
# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:6,8,12:15)], method = "euclidean")

Environment/biogeography NMDS

To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.

### Environmental
# All sites 
enve_NMDS <- metaMDS(enve_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.02991842 
## Run 1 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 7.927734e-06  max resid 1.518189e-05 
## ... Similar to previous best
## Run 2 stress 0.09023701 
## Run 3 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 7.416958e-06  max resid 1.651427e-05 
## ... Similar to previous best
## Run 4 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 6.556426e-06  max resid 1.463474e-05 
## ... Similar to previous best
## Run 5 stress 0.02991843 
## ... Procrustes: rmse 3.268343e-05  max resid 6.640321e-05 
## ... Similar to previous best
## Run 6 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 5.469388e-06  max resid 1.093905e-05 
## ... Similar to previous best
## Run 7 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 4.43334e-06  max resid 8.876235e-06 
## ... Similar to previous best
## Run 8 stress 0.02991842 
## ... Procrustes: rmse 1.21299e-05  max resid 2.488979e-05 
## ... Similar to previous best
## Run 9 stress 0.02991842 
## ... Procrustes: rmse 7.909309e-06  max resid 1.652944e-05 
## ... Similar to previous best
## Run 10 stress 0.02991842 
## ... Procrustes: rmse 4.854502e-06  max resid 9.021884e-06 
## ... Similar to previous best
## Run 11 stress 0.02991843 
## ... Procrustes: rmse 2.106383e-05  max resid 4.320865e-05 
## ... Similar to previous best
## Run 12 stress 0.09023704 
## Run 13 stress 0.02991842 
## ... Procrustes: rmse 4.135511e-06  max resid 6.505277e-06 
## ... Similar to previous best
## Run 14 stress 0.09023701 
## Run 15 stress 0.352842 
## Run 16 stress 0.02991842 
## ... Procrustes: rmse 6.926008e-06  max resid 1.430135e-05 
## ... Similar to previous best
## Run 17 stress 0.02991842 
## ... Procrustes: rmse 9.461877e-06  max resid 1.907116e-05 
## ... Similar to previous best
## Run 18 stress 0.09169813 
## Run 19 stress 0.03663691 
## Run 20 stress 0.09169807 
## Run 21 stress 0.02991842 
## ... Procrustes: rmse 1.080958e-05  max resid 2.03354e-05 
## ... Similar to previous best
## Run 22 stress 0.09023701 
## Run 23 stress 0.02991842 
## ... Procrustes: rmse 5.260802e-06  max resid 1.409544e-05 
## ... Similar to previous best
## Run 24 stress 0.02991842 
## ... Procrustes: rmse 6.141855e-06  max resid 1.283677e-05 
## ... Similar to previous best
## Run 25 stress 0.02991843 
## ... Procrustes: rmse 2.904157e-05  max resid 5.8637e-05 
## ... Similar to previous best
## Run 26 stress 0.02991842 
## ... Procrustes: rmse 1.091825e-05  max resid 2.233127e-05 
## ... Similar to previous best
## Run 27 stress 0.09023701 
## Run 28 stress 0.02991842 
## ... Procrustes: rmse 6.029678e-06  max resid 9.916972e-06 
## ... Similar to previous best
## Run 29 stress 0.02991842 
## ... Procrustes: rmse 9.745251e-06  max resid 2.069462e-05 
## ... Similar to previous best
## Run 30 stress 0.02991842 
## ... Procrustes: rmse 5.145387e-06  max resid 9.577867e-06 
## ... Similar to previous best
## Run 31 stress 0.03663679 
## Run 32 stress 0.02991842 
## ... Procrustes: rmse 3.520057e-06  max resid 6.938417e-06 
## ... Similar to previous best
## Run 33 stress 0.09169809 
## Run 34 stress 0.02991842 
## ... Procrustes: rmse 4.266304e-06  max resid 8.785907e-06 
## ... Similar to previous best
## Run 35 stress 0.02991842 
## ... Procrustes: rmse 1.537147e-05  max resid 3.136649e-05 
## ... Similar to previous best
## Run 36 stress 0.02991843 
## ... Procrustes: rmse 2.034919e-05  max resid 4.185444e-05 
## ... Similar to previous best
## Run 37 stress 0.03663657 
## Run 38 stress 0.02991842 
## ... Procrustes: rmse 1.58702e-05  max resid 3.249053e-05 
## ... Similar to previous best
## Run 39 stress 0.1186089 
## Run 40 stress 0.09169808 
## Run 41 stress 0.02991843 
## ... Procrustes: rmse 2.265933e-05  max resid 4.624876e-05 
## ... Similar to previous best
## Run 42 stress 0.02991842 
## ... Procrustes: rmse 8.716766e-06  max resid 1.719959e-05 
## ... Similar to previous best
## Run 43 stress 0.02991842 
## ... Procrustes: rmse 9.217016e-06  max resid 1.890163e-05 
## ... Similar to previous best
## Run 44 stress 0.03663673 
## Run 45 stress 0.1088093 
## Run 46 stress 0.09023701 
## Run 47 stress 0.03663691 
## Run 48 stress 0.02991842 
## ... Procrustes: rmse 1.626056e-05  max resid 3.311974e-05 
## ... Similar to previous best
## Run 49 stress 0.09023701 
## Run 50 stress 0.02991843 
## ... Procrustes: rmse 2.347395e-05  max resid 4.707679e-05 
## ... Similar to previous best
## Run 51 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 2.555033e-06  max resid 4.698205e-06 
## ... Similar to previous best
## Run 52 stress 0.02991842 
## ... Procrustes: rmse 9.70057e-06  max resid 1.989416e-05 
## ... Similar to previous best
## Run 53 stress 0.02991842 
## ... Procrustes: rmse 4.936798e-06  max resid 1.195098e-05 
## ... Similar to previous best
## Run 54 stress 0.02991842 
## ... Procrustes: rmse 2.077487e-06  max resid 3.229176e-06 
## ... Similar to previous best
## Run 55 stress 0.110018 
## Run 56 stress 0.1147129 
## Run 57 stress 0.02991842 
## ... Procrustes: rmse 4.592946e-06  max resid 9.263642e-06 
## ... Similar to previous best
## Run 58 stress 0.03663707 
## Run 59 stress 0.02991842 
## ... Procrustes: rmse 7.718917e-06  max resid 1.680319e-05 
## ... Similar to previous best
## Run 60 stress 0.02991842 
## ... Procrustes: rmse 5.129039e-06  max resid 1.039018e-05 
## ... Similar to previous best
## Run 61 stress 0.09169813 
## Run 62 stress 0.02991842 
## ... Procrustes: rmse 5.94038e-06  max resid 1.162666e-05 
## ... Similar to previous best
## Run 63 stress 0.110018 
## Run 64 stress 0.03663704 
## Run 65 stress 0.03663716 
## Run 66 stress 0.03663695 
## Run 67 stress 0.09169807 
## Run 68 stress 0.03663687 
## Run 69 stress 0.09023702 
## Run 70 stress 0.02991842 
## ... Procrustes: rmse 6.529985e-06  max resid 1.288535e-05 
## ... Similar to previous best
## Run 71 stress 0.02991842 
## ... Procrustes: rmse 1.118255e-05  max resid 2.091829e-05 
## ... Similar to previous best
## Run 72 stress 0.1088094 
## Run 73 stress 0.09169813 
## Run 74 stress 0.02991842 
## ... Procrustes: rmse 3.703841e-06  max resid 1.007306e-05 
## ... Similar to previous best
## Run 75 stress 0.02991842 
## ... Procrustes: rmse 1.639987e-06  max resid 2.898341e-06 
## ... Similar to previous best
## Run 76 stress 0.02991842 
## ... Procrustes: rmse 8.592408e-06  max resid 1.801897e-05 
## ... Similar to previous best
## Run 77 stress 0.1110186 
## Run 78 stress 0.1109862 
## Run 79 stress 0.02991842 
## ... Procrustes: rmse 1.146471e-05  max resid 2.33969e-05 
## ... Similar to previous best
## Run 80 stress 0.09023701 
## Run 81 stress 0.02991842 
## ... Procrustes: rmse 4.831747e-06  max resid 1.364128e-05 
## ... Similar to previous best
## Run 82 stress 0.02991842 
## ... Procrustes: rmse 3.416612e-06  max resid 7.822285e-06 
## ... Similar to previous best
## Run 83 stress 0.02991842 
## ... Procrustes: rmse 3.929684e-06  max resid 7.704234e-06 
## ... Similar to previous best
## Run 84 stress 0.3481604 
## Run 85 stress 0.03663715 
## Run 86 stress 0.09169806 
## Run 87 stress 0.02991842 
## ... Procrustes: rmse 9.011834e-06  max resid 1.859812e-05 
## ... Similar to previous best
## Run 88 stress 0.02991848 
## ... Procrustes: rmse 2.745152e-05  max resid 4.426959e-05 
## ... Similar to previous best
## Run 89 stress 0.02991842 
## ... Procrustes: rmse 4.129715e-06  max resid 6.373733e-06 
## ... Similar to previous best
## Run 90 stress 0.03663703 
## Run 91 stress 0.09023701 
## Run 92 stress 0.09023702 
## Run 93 stress 0.09023701 
## Run 94 stress 0.02991842 
## ... Procrustes: rmse 7.341035e-06  max resid 1.469657e-05 
## ... Similar to previous best
## Run 95 stress 0.02991842 
## ... Procrustes: rmse 2.854891e-06  max resid 6.24075e-06 
## ... Similar to previous best
## Run 96 stress 0.02991842 
## ... Procrustes: rmse 6.746697e-06  max resid 1.273075e-05 
## ... Similar to previous best
## Run 97 stress 0.09023701 
## Run 98 stress 0.09023701 
## Run 99 stress 0.09023703 
## Run 100 stress 0.1088093 
## Run 101 stress 0.1186084 
## Run 102 stress 0.03663693 
## Run 103 stress 0.09169807 
## Run 104 stress 0.09023702 
## Run 105 stress 0.02991842 
## ... Procrustes: rmse 6.37571e-06  max resid 1.205266e-05 
## ... Similar to previous best
## Run 106 stress 0.03663706 
## Run 107 stress 0.1088093 
## Run 108 stress 0.09023701 
## Run 109 stress 0.09023701 
## Run 110 stress 0.02991842 
## ... Procrustes: rmse 2.091123e-06  max resid 3.86338e-06 
## ... Similar to previous best
## Run 111 stress 0.09169806 
## Run 112 stress 0.02991842 
## ... Procrustes: rmse 7.869382e-06  max resid 1.581674e-05 
## ... Similar to previous best
## Run 113 stress 0.02991842 
## ... Procrustes: rmse 8.300794e-06  max resid 1.660398e-05 
## ... Similar to previous best
## Run 114 stress 0.02991842 
## ... Procrustes: rmse 1.272497e-05  max resid 2.633422e-05 
## ... Similar to previous best
## Run 115 stress 0.02991842 
## ... Procrustes: rmse 1.003855e-05  max resid 2.077129e-05 
## ... Similar to previous best
## Run 116 stress 0.1088093 
## Run 117 stress 0.02991842 
## ... Procrustes: rmse 5.813865e-06  max resid 1.189404e-05 
## ... Similar to previous best
## Run 118 stress 0.02991842 
## ... Procrustes: rmse 4.992034e-06  max resid 1.011008e-05 
## ... Similar to previous best
## Run 119 stress 0.02991842 
## ... Procrustes: rmse 9.292826e-06  max resid 1.888719e-05 
## ... Similar to previous best
## Run 120 stress 0.09023701 
## Run 121 stress 0.110018 
## Run 122 stress 0.02991842 
## ... Procrustes: rmse 4.51346e-06  max resid 9.294654e-06 
## ... Similar to previous best
## Run 123 stress 0.02991842 
## ... Procrustes: rmse 8.129545e-06  max resid 1.462742e-05 
## ... Similar to previous best
## Run 124 stress 0.09023702 
## Run 125 stress 0.09023701 
## Run 126 stress 0.09023701 
## Run 127 stress 0.02991842 
## ... Procrustes: rmse 6.173457e-06  max resid 1.253045e-05 
## ... Similar to previous best
## Run 128 stress 0.02991842 
## ... Procrustes: rmse 1.432676e-05  max resid 2.8528e-05 
## ... Similar to previous best
## Run 129 stress 0.02991842 
## ... Procrustes: rmse 1.665604e-05  max resid 3.463776e-05 
## ... Similar to previous best
## Run 130 stress 0.02991842 
## ... Procrustes: rmse 1.729961e-06  max resid 3.954341e-06 
## ... Similar to previous best
## Run 131 stress 0.09023701 
## Run 132 stress 0.03663675 
## Run 133 stress 0.02991842 
## ... Procrustes: rmse 7.362839e-06  max resid 1.505682e-05 
## ... Similar to previous best
## Run 134 stress 0.1088093 
## Run 135 stress 0.09169807 
## Run 136 stress 0.09023701 
## Run 137 stress 0.03663692 
## Run 138 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 1.836598e-06  max resid 3.026752e-06 
## ... Similar to previous best
## Run 139 stress 0.09023701 
## Run 140 stress 0.02991842 
## ... Procrustes: rmse 1.601004e-05  max resid 3.310174e-05 
## ... Similar to previous best
## Run 141 stress 0.02991842 
## ... Procrustes: rmse 1.670753e-06  max resid 3.494771e-06 
## ... Similar to previous best
## Run 142 stress 0.09169806 
## Run 143 stress 0.09023701 
## Run 144 stress 0.02991842 
## ... Procrustes: rmse 1.240345e-05  max resid 2.574448e-05 
## ... Similar to previous best
## Run 145 stress 0.03663679 
## Run 146 stress 0.02991842 
## ... Procrustes: rmse 5.306642e-06  max resid 8.605435e-06 
## ... Similar to previous best
## Run 147 stress 0.09023701 
## Run 148 stress 0.03663687 
## Run 149 stress 0.02991843 
## ... Procrustes: rmse 8.824223e-06  max resid 2.075458e-05 
## ... Similar to previous best
## Run 150 stress 0.09169809 
## Run 151 stress 0.02991842 
## ... Procrustes: rmse 3.984957e-06  max resid 9.538941e-06 
## ... Similar to previous best
## Run 152 stress 0.03663696 
## Run 153 stress 0.03663715 
## Run 154 stress 0.02991842 
## ... Procrustes: rmse 9.094343e-06  max resid 1.849303e-05 
## ... Similar to previous best
## Run 155 stress 0.1088094 
## Run 156 stress 0.02991842 
## ... Procrustes: rmse 4.933131e-06  max resid 1.055351e-05 
## ... Similar to previous best
## Run 157 stress 0.09023701 
## Run 158 stress 0.09023701 
## Run 159 stress 0.0366369 
## Run 160 stress 0.02991842 
## ... Procrustes: rmse 1.671895e-05  max resid 3.368629e-05 
## ... Similar to previous best
## Run 161 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 1.13386e-06  max resid 2.427977e-06 
## ... Similar to previous best
## Run 162 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 2.809123e-06  max resid 5.101596e-06 
## ... Similar to previous best
## Run 163 stress 0.02991842 
## ... Procrustes: rmse 8.103447e-06  max resid 1.647788e-05 
## ... Similar to previous best
## Run 164 stress 0.02991842 
## ... Procrustes: rmse 3.511624e-06  max resid 7.342368e-06 
## ... Similar to previous best
## Run 165 stress 0.02991842 
## ... Procrustes: rmse 1.730464e-06  max resid 4.42158e-06 
## ... Similar to previous best
## Run 166 stress 0.02991843 
## ... Procrustes: rmse 1.917565e-05  max resid 3.987313e-05 
## ... Similar to previous best
## Run 167 stress 0.02991842 
## ... Procrustes: rmse 9.264234e-06  max resid 1.92379e-05 
## ... Similar to previous best
## Run 168 stress 0.09023702 
## Run 169 stress 0.02991842 
## ... Procrustes: rmse 9.572121e-06  max resid 1.919126e-05 
## ... Similar to previous best
## Run 170 stress 0.02991842 
## ... Procrustes: rmse 5.630941e-06  max resid 1.15825e-05 
## ... Similar to previous best
## Run 171 stress 0.09169807 
## Run 172 stress 0.02991843 
## ... Procrustes: rmse 1.392712e-05  max resid 2.645969e-05 
## ... Similar to previous best
## Run 173 stress 0.02991842 
## ... Procrustes: rmse 5.866593e-06  max resid 1.375404e-05 
## ... Similar to previous best
## Run 174 stress 0.03663697 
## Run 175 stress 0.02991842 
## ... Procrustes: rmse 4.229399e-06  max resid 8.755024e-06 
## ... Similar to previous best
## Run 176 stress 0.02991842 
## ... Procrustes: rmse 7.838264e-06  max resid 1.584395e-05 
## ... Similar to previous best
## Run 177 stress 0.09023703 
## Run 178 stress 0.02991842 
## ... Procrustes: rmse 4.114617e-06  max resid 9.699002e-06 
## ... Similar to previous best
## Run 179 stress 0.02991842 
## ... Procrustes: rmse 4.832311e-06  max resid 9.432461e-06 
## ... Similar to previous best
## Run 180 stress 0.02991842 
## ... Procrustes: rmse 5.073539e-06  max resid 1.072871e-05 
## ... Similar to previous best
## Run 181 stress 0.02991842 
## ... Procrustes: rmse 7.231737e-06  max resid 1.390554e-05 
## ... Similar to previous best
## Run 182 stress 0.02991842 
## ... Procrustes: rmse 7.987368e-06  max resid 1.607959e-05 
## ... Similar to previous best
## Run 183 stress 0.02991842 
## ... Procrustes: rmse 3.317352e-06  max resid 7.051257e-06 
## ... Similar to previous best
## Run 184 stress 0.02991843 
## ... Procrustes: rmse 2.950308e-05  max resid 6.029956e-05 
## ... Similar to previous best
## Run 185 stress 0.02991843 
## ... Procrustes: rmse 2.198159e-05  max resid 4.472038e-05 
## ... Similar to previous best
## Run 186 stress 0.02991842 
## ... Procrustes: rmse 4.257478e-06  max resid 9.811357e-06 
## ... Similar to previous best
## Run 187 stress 0.02991842 
## ... Procrustes: rmse 1.637298e-06  max resid 2.527321e-06 
## ... Similar to previous best
## Run 188 stress 0.09169809 
## Run 189 stress 0.03663705 
## Run 190 stress 0.02991842 
## ... New best solution
## ... Procrustes: rmse 1.939373e-06  max resid 3.468004e-06 
## ... Similar to previous best
## Run 191 stress 0.09023701 
## Run 192 stress 0.02991843 
## ... Procrustes: rmse 2.50039e-05  max resid 5.013976e-05 
## ... Similar to previous best
## Run 193 stress 0.02991842 
## ... Procrustes: rmse 1.286435e-05  max resid 2.465242e-05 
## ... Similar to previous best
## Run 194 stress 0.02991842 
## ... Procrustes: rmse 1.491778e-05  max resid 3.00422e-05 
## ... Similar to previous best
## Run 195 stress 0.02991842 
## ... Procrustes: rmse 4.536161e-06  max resid 8.93335e-06 
## ... Similar to previous best
## Run 196 stress 0.03663702 
## Run 197 stress 0.02991842 
## ... Procrustes: rmse 1.62394e-05  max resid 3.323862e-05 
## ... Similar to previous best
## Run 198 stress 0.02991842 
## ... Procrustes: rmse 1.203789e-05  max resid 2.401632e-05 
## ... Similar to previous best
## Run 199 stress 0.02991843 
## ... Procrustes: rmse 2.002139e-05  max resid 4.028859e-05 
## ... Similar to previous best
## Run 200 stress 0.02991842 
## ... Procrustes: rmse 2.14304e-06  max resid 5.215179e-06 
## ... Similar to previous best
## Run 201 stress 0.09169807 
## Run 202 stress 0.1110185 
## Run 203 stress 0.02991842 
## ... Procrustes: rmse 1.684917e-06  max resid 2.813186e-06 
## ... Similar to previous best
## Run 204 stress 0.09023702 
## Run 205 stress 0.02991842 
## ... Procrustes: rmse 6.634577e-06  max resid 1.331742e-05 
## ... Similar to previous best
## Run 206 stress 0.02991842 
## ... Procrustes: rmse 4.929855e-06  max resid 1.151816e-05 
## ... Similar to previous best
## Run 207 stress 0.02991842 
## ... Procrustes: rmse 1.454592e-05  max resid 2.951593e-05 
## ... Similar to previous best
## Run 208 stress 0.02991842 
## ... Procrustes: rmse 1.010144e-05  max resid 2.077329e-05 
## ... Similar to previous best
## Run 209 stress 0.09023701 
## Run 210 stress 0.1187362 
## Run 211 stress 0.02991842 
## ... Procrustes: rmse 1.270776e-06  max resid 2.862316e-06 
## ... Similar to previous best
## Run 212 stress 0.02991842 
## ... Procrustes: rmse 1.759988e-06  max resid 3.87381e-06 
## ... Similar to previous best
## Run 213 stress 0.02991842 
## ... Procrustes: rmse 3.113378e-06  max resid 5.164975e-06 
## ... Similar to previous best
## Run 214 stress 0.09023702 
## Run 215 stress 0.02991842 
## ... Procrustes: rmse 4.588102e-06  max resid 7.431037e-06 
## ... Similar to previous best
## Run 216 stress 0.02991842 
## ... Procrustes: rmse 2.889833e-06  max resid 7.261943e-06 
## ... Similar to previous best
## Run 217 stress 0.1088093 
## Run 218 stress 0.03663674 
## Run 219 stress 0.02991842 
## ... Procrustes: rmse 1.494731e-05  max resid 3.099801e-05 
## ... Similar to previous best
## Run 220 stress 0.02991843 
## ... Procrustes: rmse 2.145762e-05  max resid 4.346616e-05 
## ... Similar to previous best
## Run 221 stress 0.02991842 
## ... Procrustes: rmse 8.118572e-06  max resid 1.627958e-05 
## ... Similar to previous best
## Run 222 stress 0.03663714 
## Run 223 stress 0.02991842 
## ... Procrustes: rmse 3.014506e-06  max resid 7.252105e-06 
## ... Similar to previous best
## Run 224 stress 0.03663675 
## Run 225 stress 0.09023702 
## Run 226 stress 0.02991842 
## ... Procrustes: rmse 6.372772e-06  max resid 1.268766e-05 
## ... Similar to previous best
## Run 227 stress 0.09023702 
## Run 228 stress 0.1088094 
## Run 229 stress 0.03663698 
## Run 230 stress 0.09169816 
## Run 231 stress 0.09169812 
## Run 232 stress 0.09023702 
## Run 233 stress 0.02991842 
## ... Procrustes: rmse 8.74286e-06  max resid 1.595674e-05 
## ... Similar to previous best
## Run 234 stress 0.1184596 
## Run 235 stress 0.09169814 
## Run 236 stress 0.02991842 
## ... Procrustes: rmse 5.597984e-06  max resid 1.025533e-05 
## ... Similar to previous best
## Run 237 stress 0.02991842 
## ... Procrustes: rmse 9.366416e-06  max resid 1.850213e-05 
## ... Similar to previous best
## Run 238 stress 0.09023702 
## Run 239 stress 0.02991842 
## ... Procrustes: rmse 2.441932e-06  max resid 5.272125e-06 
## ... Similar to previous best
## Run 240 stress 0.02991842 
## ... Procrustes: rmse 6.669348e-07  max resid 1.438e-06 
## ... Similar to previous best
## Run 241 stress 0.110018 
## Run 242 stress 0.09023702 
## Run 243 stress 0.02991842 
## ... Procrustes: rmse 9.154911e-06  max resid 1.905281e-05 
## ... Similar to previous best
## Run 244 stress 0.09023701 
## Run 245 stress 0.03663712 
## Run 246 stress 0.1088094 
## Run 247 stress 0.0366369 
## Run 248 stress 0.09023701 
## Run 249 stress 0.02991842 
## ... Procrustes: rmse 1.533324e-05  max resid 3.084786e-05 
## ... Similar to previous best
## Run 250 stress 0.09023701 
## Run 251 stress 0.1088094 
## Run 252 stress 0.02991842 
## ... Procrustes: rmse 1.608902e-05  max resid 3.239382e-05 
## ... Similar to previous best
## Run 253 stress 0.02991842 
## ... Procrustes: rmse 7.174807e-06  max resid 1.450818e-05 
## ... Similar to previous best
## Run 254 stress 0.1166608 
## Run 255 stress 0.09169807 
## Run 256 stress 0.02991842 
## ... Procrustes: rmse 1.108815e-05  max resid 2.231155e-05 
## ... Similar to previous best
## Run 257 stress 0.03663699 
## Run 258 stress 0.09023702 
## Run 259 stress 0.09169806 
## Run 260 stress 0.1147132 
## Run 261 stress 0.09023702 
## Run 262 stress 0.02991842 
## ... Procrustes: rmse 5.400046e-06  max resid 1.08687e-05 
## ... Similar to previous best
## Run 263 stress 0.02991842 
## ... Procrustes: rmse 4.256351e-06  max resid 1.392938e-05 
## ... Similar to previous best
## Run 264 stress 0.02991842 
## ... Procrustes: rmse 7.456946e-06  max resid 1.469906e-05 
## ... Similar to previous best
## Run 265 stress 0.09169807 
## Run 266 stress 0.02991842 
## ... Procrustes: rmse 1.658594e-05  max resid 3.412253e-05 
## ... Similar to previous best
## Run 267 stress 0.02991842 
## ... Procrustes: rmse 8.616672e-07  max resid 1.799983e-06 
## ... Similar to previous best
## Run 268 stress 0.3272767 
## Run 269 stress 0.09023701 
## Run 270 stress 0.03663659 
## Run 271 stress 0.02991842 
## ... Procrustes: rmse 1.724839e-05  max resid 3.47969e-05 
## ... Similar to previous best
## Run 272 stress 0.09023701 
## Run 273 stress 0.02991842 
## ... Procrustes: rmse 1.059991e-05  max resid 2.13671e-05 
## ... Similar to previous best
## Run 274 stress 0.02991842 
## ... Procrustes: rmse 9.542826e-06  max resid 1.882375e-05 
## ... Similar to previous best
## Run 275 stress 0.03663702 
## Run 276 stress 0.02991842 
## ... Procrustes: rmse 3.377689e-06  max resid 7.195793e-06 
## ... Similar to previous best
## Run 277 stress 0.03663688 
## Run 278 stress 0.1110187 
## Run 279 stress 0.1185928 
## Run 280 stress 0.02991842 
## ... Procrustes: rmse 5.295894e-06  max resid 1.063664e-05 
## ... Similar to previous best
## Run 281 stress 0.09169806 
## Run 282 stress 0.02991842 
## ... Procrustes: rmse 2.625891e-06  max resid 5.604211e-06 
## ... Similar to previous best
## Run 283 stress 0.09023702 
## Run 284 stress 0.02991842 
## ... Procrustes: rmse 7.156268e-06  max resid 1.42865e-05 
## ... Similar to previous best
## Run 285 stress 0.09169806 
## Run 286 stress 0.02991842 
## ... Procrustes: rmse 1.675456e-05  max resid 3.393243e-05 
## ... Similar to previous best
## Run 287 stress 0.02991842 
## ... Procrustes: rmse 3.066207e-06  max resid 6.264382e-06 
## ... Similar to previous best
## Run 288 stress 0.02991842 
## ... Procrustes: rmse 1.011265e-05  max resid 2.026426e-05 
## ... Similar to previous best
## Run 289 stress 0.02991842 
## ... Procrustes: rmse 2.540593e-06  max resid 4.266318e-06 
## ... Similar to previous best
## Run 290 stress 0.02991843 
## ... Procrustes: rmse 2.319706e-05  max resid 4.613677e-05 
## ... Similar to previous best
## Run 291 stress 0.02991842 
## ... Procrustes: rmse 1.57602e-06  max resid 3.125223e-06 
## ... Similar to previous best
## Run 292 stress 0.02991842 
## ... Procrustes: rmse 6.62172e-06  max resid 1.379371e-05 
## ... Similar to previous best
## Run 293 stress 0.02991843 
## ... Procrustes: rmse 2.460949e-05  max resid 4.98332e-05 
## ... Similar to previous best
## Run 294 stress 0.02991842 
## ... Procrustes: rmse 3.386417e-06  max resid 6.468889e-06 
## ... Similar to previous best
## Run 295 stress 0.02991843 
## ... Procrustes: rmse 1.137216e-05  max resid 2.076152e-05 
## ... Similar to previous best
## Run 296 stress 0.02991842 
## ... Procrustes: rmse 1.650106e-06  max resid 2.734396e-06 
## ... Similar to previous best
## Run 297 stress 0.03663698 
## Run 298 stress 0.02991842 
## ... Procrustes: rmse 2.553338e-06  max resid 4.269288e-06 
## ... Similar to previous best
## Run 299 stress 0.02991842 
## ... Procrustes: rmse 1.125127e-06  max resid 1.917229e-06 
## ... Similar to previous best
## Run 300 stress 0.02991842 
## ... Procrustes: rmse 1.63782e-05  max resid 3.290125e-05 
## ... Similar to previous best
## Run 301 stress 0.02991842 
## ... Procrustes: rmse 4.602486e-06  max resid 1.09884e-05 
## ... Similar to previous best
## Run 302 stress 0.09169808 
## Run 303 stress 0.02991843 
## ... Procrustes: rmse 2.678632e-05  max resid 5.459693e-05 
## ... Similar to previous best
## Run 304 stress 0.09169806 
## Run 305 stress 0.09023701 
## Run 306 stress 0.03663708 
## Run 307 stress 0.02991842 
## ... Procrustes: rmse 9.566625e-06  max resid 1.923606e-05 
## ... Similar to previous best
## Run 308 stress 0.02991842 
## ... Procrustes: rmse 1.62263e-05  max resid 3.290527e-05 
## ... Similar to previous best
## Run 309 stress 0.09023701 
## Run 310 stress 0.02991842 
## ... Procrustes: rmse 1.206328e-05  max resid 2.421004e-05 
## ... Similar to previous best
## Run 311 stress 0.02991843 
## ... Procrustes: rmse 2.38573e-05  max resid 4.774304e-05 
## ... Similar to previous best
## Run 312 stress 0.02991842 
## ... Procrustes: rmse 4.520831e-06  max resid 9.610983e-06 
## ... Similar to previous best
## Run 313 stress 0.02991842 
## ... Procrustes: rmse 1.296027e-05  max resid 2.657727e-05 
## ... Similar to previous best
## Run 314 stress 0.02991842 
## ... Procrustes: rmse 8.880655e-06  max resid 1.773136e-05 
## ... Similar to previous best
## Run 315 stress 0.02991842 
## ... Procrustes: rmse 7.577435e-06  max resid 1.518114e-05 
## ... Similar to previous best
## Run 316 stress 0.09169806 
## Run 317 stress 0.09169807 
## Run 318 stress 0.02991842 
## ... Procrustes: rmse 7.476469e-06  max resid 1.563017e-05 
## ... Similar to previous best
## Run 319 stress 0.02991842 
## ... Procrustes: rmse 1.003574e-05  max resid 1.886673e-05 
## ... Similar to previous best
## Run 320 stress 0.02991843 
## ... Procrustes: rmse 2.461984e-05  max resid 5.051687e-05 
## ... Similar to previous best
## Run 321 stress 0.09169806 
## Run 322 stress 0.02991842 
## ... Procrustes: rmse 1.652943e-05  max resid 3.316147e-05 
## ... Similar to previous best
## Run 323 stress 0.09023701 
## Run 324 stress 0.03663662 
## Run 325 stress 0.1110185 
## Run 326 stress 0.1100181 
## Run 327 stress 0.09169806 
## Run 328 stress 0.02991842 
## ... Procrustes: rmse 4.438123e-06  max resid 1.0696e-05 
## ... Similar to previous best
## Run 329 stress 0.02991842 
## ... Procrustes: rmse 9.14661e-06  max resid 1.837142e-05 
## ... Similar to previous best
## Run 330 stress 0.09023702 
## Run 331 stress 0.03663698 
## Run 332 stress 0.02991842 
## ... Procrustes: rmse 7.928058e-06  max resid 1.68375e-05 
## ... Similar to previous best
## Run 333 stress 0.02991842 
## ... Procrustes: rmse 7.949484e-06  max resid 1.680612e-05 
## ... Similar to previous best
## Run 334 stress 0.09023701 
## Run 335 stress 0.09023702 
## Run 336 stress 0.02991843 
## ... Procrustes: rmse 6.143087e-06  max resid 1.585037e-05 
## ... Similar to previous best
## Run 337 stress 0.09023702 
## Run 338 stress 0.03663677 
## Run 339 stress 0.02991842 
## ... Procrustes: rmse 3.960607e-06  max resid 8.612109e-06 
## ... Similar to previous best
## Run 340 stress 0.03663709 
## Run 341 stress 0.02991842 
## ... Procrustes: rmse 1.662367e-05  max resid 3.471996e-05 
## ... Similar to previous best
## Run 342 stress 0.118841 
## Run 343 stress 0.09023701 
## Run 344 stress 0.1099274 
## Run 345 stress 0.02991842 
## ... Procrustes: rmse 9.036693e-06  max resid 1.791421e-05 
## ... Similar to previous best
## Run 346 stress 0.1114285 
## Run 347 stress 0.02991842 
## ... Procrustes: rmse 9.002795e-06  max resid 2.008636e-05 
## ... Similar to previous best
## Run 348 stress 0.02991842 
## ... Procrustes: rmse 6.679675e-06  max resid 1.576318e-05 
## ... Similar to previous best
## Run 349 stress 0.02991842 
## ... Procrustes: rmse 6.062342e-06  max resid 1.258628e-05 
## ... Similar to previous best
## Run 350 stress 0.02991842 
## ... Procrustes: rmse 5.175593e-07  max resid 1.178297e-06 
## ... Similar to previous best
## Run 351 stress 0.09169809 
## Run 352 stress 0.02991842 
## ... Procrustes: rmse 5.241141e-06  max resid 1.102547e-05 
## ... Similar to previous best
## Run 353 stress 0.03663666 
## Run 354 stress 0.09169806 
## Run 355 stress 0.09023701 
## Run 356 stress 0.09169807 
## Run 357 stress 0.02991842 
## ... Procrustes: rmse 5.073589e-06  max resid 1.069528e-05 
## ... Similar to previous best
## Run 358 stress 0.02991842 
## ... Procrustes: rmse 1.08885e-05  max resid 2.184512e-05 
## ... Similar to previous best
## Run 359 stress 0.02991842 
## ... Procrustes: rmse 2.4748e-06  max resid 4.64477e-06 
## ... Similar to previous best
## Run 360 stress 0.02991842 
## ... Procrustes: rmse 9.025654e-06  max resid 2.272095e-05 
## ... Similar to previous best
## Run 361 stress 0.09023701 
## Run 362 stress 0.02991842 
## ... Procrustes: rmse 9.512208e-06  max resid 1.86135e-05 
## ... Similar to previous best
## Run 363 stress 0.110018 
## Run 364 stress 0.09169807 
## Run 365 stress 0.02991843 
## ... Procrustes: rmse 2.726975e-05  max resid 5.679539e-05 
## ... Similar to previous best
## Run 366 stress 0.1088093 
## Run 367 stress 0.09169807 
## Run 368 stress 0.02991842 
## ... Procrustes: rmse 2.447219e-06  max resid 5.080163e-06 
## ... Similar to previous best
## Run 369 stress 0.09023701 
## Run 370 stress 0.02991842 
## ... Procrustes: rmse 7.38612e-06  max resid 1.441831e-05 
## ... Similar to previous best
## Run 371 stress 0.03663658 
## Run 372 stress 0.02991842 
## ... Procrustes: rmse 5.642358e-06  max resid 1.123515e-05 
## ... Similar to previous best
## Run 373 stress 0.09023703 
## Run 374 stress 0.03663702 
## Run 375 stress 0.02991842 
## ... Procrustes: rmse 5.381434e-06  max resid 1.035468e-05 
## ... Similar to previous best
## Run 376 stress 0.02991842 
## ... Procrustes: rmse 1.176695e-06  max resid 2.436844e-06 
## ... Similar to previous best
## Run 377 stress 0.03663684 
## Run 378 stress 0.09023701 
## Run 379 stress 0.09023702 
## Run 380 stress 0.02991843 
## ... Procrustes: rmse 2.032044e-05  max resid 4.107364e-05 
## ... Similar to previous best
## Run 381 stress 0.02991842 
## ... Procrustes: rmse 3.572445e-06  max resid 6.956277e-06 
## ... Similar to previous best
## Run 382 stress 0.1088094 
## Run 383 stress 0.02991842 
## ... Procrustes: rmse 4.875534e-06  max resid 9.571153e-06 
## ... Similar to previous best
## Run 384 stress 0.09023703 
## Run 385 stress 0.02991842 
## ... Procrustes: rmse 1.377755e-05  max resid 2.839211e-05 
## ... Similar to previous best
## Run 386 stress 0.02991842 
## ... Procrustes: rmse 3.778017e-06  max resid 7.277234e-06 
## ... Similar to previous best
## Run 387 stress 0.09023701 
## Run 388 stress 0.02991842 
## ... Procrustes: rmse 1.572722e-05  max resid 3.365784e-05 
## ... Similar to previous best
## Run 389 stress 0.09023704 
## Run 390 stress 0.1088093 
## Run 391 stress 0.09169808 
## Run 392 stress 0.02991842 
## ... Procrustes: rmse 5.935896e-06  max resid 1.182367e-05 
## ... Similar to previous best
## Run 393 stress 0.02991842 
## ... Procrustes: rmse 6.046739e-06  max resid 1.19708e-05 
## ... Similar to previous best
## Run 394 stress 0.02991843 
## ... Procrustes: rmse 2.966681e-05  max resid 5.920051e-05 
## ... Similar to previous best
## Run 395 stress 0.02991842 
## ... Procrustes: rmse 4.3976e-06  max resid 8.808236e-06 
## ... Similar to previous best
## Run 396 stress 0.110018 
## Run 397 stress 0.02991842 
## ... Procrustes: rmse 1.127782e-05  max resid 2.259701e-05 
## ... Similar to previous best
## Run 398 stress 0.03663696 
## Run 399 stress 0.03663689 
## Run 400 stress 0.09169806 
## Run 401 stress 0.1110186 
## Run 402 stress 0.02991842 
## ... Procrustes: rmse 1.083979e-05  max resid 2.065701e-05 
## ... Similar to previous best
## Run 403 stress 0.09169809 
## Run 404 stress 0.02991842 
## ... Procrustes: rmse 1.124168e-05  max resid 2.261686e-05 
## ... Similar to previous best
## Run 405 stress 0.03663717 
## Run 406 stress 0.02991842 
## ... Procrustes: rmse 1.740101e-06  max resid 2.905679e-06 
## ... Similar to previous best
## Run 407 stress 0.02991842 
## ... Procrustes: rmse 1.051793e-05  max resid 2.032746e-05 
## ... Similar to previous best
## Run 408 stress 0.02991842 
## ... Procrustes: rmse 4.088433e-07  max resid 7.316082e-07 
## ... Similar to previous best
## Run 409 stress 0.1182729 
## Run 410 stress 0.02991842 
## ... Procrustes: rmse 6.550062e-06  max resid 1.366841e-05 
## ... Similar to previous best
## Run 411 stress 0.02991843 
## ... Procrustes: rmse 1.918129e-05  max resid 3.863755e-05 
## ... Similar to previous best
## Run 412 stress 0.02991843 
## ... Procrustes: rmse 2.988133e-05  max resid 6.039896e-05 
## ... Similar to previous best
## Run 413 stress 0.02991843 
## ... Procrustes: rmse 2.975474e-05  max resid 6.025731e-05 
## ... Similar to previous best
## Run 414 stress 0.09169808 
## Run 415 stress 0.02991843 
## ... Procrustes: rmse 2.113339e-05  max resid 4.692777e-05 
## ... Similar to previous best
## Run 416 stress 0.02991842 
## ... Procrustes: rmse 1.019092e-05  max resid 2.05158e-05 
## ... Similar to previous best
## Run 417 stress 0.03663702 
## Run 418 stress 0.03663651 
## Run 419 stress 0.03663698 
## Run 420 stress 0.03663692 
## Run 421 stress 0.02991842 
## ... Procrustes: rmse 2.723662e-06  max resid 5.758264e-06 
## ... Similar to previous best
## Run 422 stress 0.09169808 
## Run 423 stress 0.1110185 
## Run 424 stress 0.03663707 
## Run 425 stress 0.02991842 
## ... Procrustes: rmse 2.934537e-06  max resid 6.258932e-06 
## ... Similar to previous best
## Run 426 stress 0.09023701 
## Run 427 stress 0.02991842 
## ... Procrustes: rmse 7.25263e-06  max resid 1.44331e-05 
## ... Similar to previous best
## Run 428 stress 0.09023701 
## Run 429 stress 0.02991842 
## ... Procrustes: rmse 1.780989e-05  max resid 3.596841e-05 
## ... Similar to previous best
## Run 430 stress 0.03663687 
## Run 431 stress 0.03663694 
## Run 432 stress 0.02991842 
## ... Procrustes: rmse 3.658657e-06  max resid 7.990967e-06 
## ... Similar to previous best
## Run 433 stress 0.02991842 
## ... Procrustes: rmse 1.034604e-05  max resid 2.081861e-05 
## ... Similar to previous best
## Run 434 stress 0.02991842 
## ... Procrustes: rmse 9.278844e-06  max resid 1.863549e-05 
## ... Similar to previous best
## Run 435 stress 0.09023701 
## Run 436 stress 0.02991842 
## ... Procrustes: rmse 1.569064e-06  max resid 3.492159e-06 
## ... Similar to previous best
## Run 437 stress 0.02991843 
## ... Procrustes: rmse 1.289326e-05  max resid 2.282199e-05 
## ... Similar to previous best
## Run 438 stress 0.02991842 
## ... Procrustes: rmse 6.858336e-06  max resid 1.358904e-05 
## ... Similar to previous best
## Run 439 stress 0.02991842 
## ... Procrustes: rmse 3.975595e-06  max resid 8.170639e-06 
## ... Similar to previous best
## Run 440 stress 0.02991842 
## ... Procrustes: rmse 5.69131e-06  max resid 1.094983e-05 
## ... Similar to previous best
## Run 441 stress 0.02991842 
## ... Procrustes: rmse 9.121802e-06  max resid 1.828632e-05 
## ... Similar to previous best
## Run 442 stress 0.02991842 
## ... Procrustes: rmse 7.834438e-06  max resid 1.554289e-05 
## ... Similar to previous best
## Run 443 stress 0.02991842 
## ... Procrustes: rmse 4.961759e-06  max resid 1.053701e-05 
## ... Similar to previous best
## Run 444 stress 0.02991842 
## ... Procrustes: rmse 9.687504e-07  max resid 2.182231e-06 
## ... Similar to previous best
## Run 445 stress 0.02991842 
## ... Procrustes: rmse 1.167824e-05  max resid 2.344349e-05 
## ... Similar to previous best
## Run 446 stress 0.09023701 
## Run 447 stress 0.03663678 
## Run 448 stress 0.02991843 
## ... Procrustes: rmse 3.008155e-05  max resid 6.18172e-05 
## ... Similar to previous best
## Run 449 stress 0.1186088 
## Run 450 stress 0.1177874 
## Run 451 stress 0.03663698 
## Run 452 stress 0.03663704 
## Run 453 stress 0.02991842 
## ... Procrustes: rmse 2.070025e-06  max resid 5.872189e-06 
## ... Similar to previous best
## Run 454 stress 0.02991842 
## ... Procrustes: rmse 7.70192e-06  max resid 1.425737e-05 
## ... Similar to previous best
## Run 455 stress 0.09023701 
## Run 456 stress 0.1088094 
## Run 457 stress 0.09169806 
## Run 458 stress 0.02991842 
## ... Procrustes: rmse 2.399757e-06  max resid 4.630803e-06 
## ... Similar to previous best
## Run 459 stress 0.02991842 
## ... Procrustes: rmse 3.912469e-06  max resid 7.457854e-06 
## ... Similar to previous best
## Run 460 stress 0.09023701 
## Run 461 stress 0.02991842 
## ... Procrustes: rmse 3.242142e-06  max resid 6.927735e-06 
## ... Similar to previous best
## Run 462 stress 0.02991842 
## ... Procrustes: rmse 3.926913e-06  max resid 8.363069e-06 
## ... Similar to previous best
## Run 463 stress 0.02991842 
## ... Procrustes: rmse 4.90034e-06  max resid 1.271231e-05 
## ... Similar to previous best
## Run 464 stress 0.110018 
## Run 465 stress 0.02991842 
## ... Procrustes: rmse 6.498026e-06  max resid 1.11175e-05 
## ... Similar to previous best
## Run 466 stress 0.02991842 
## ... Procrustes: rmse 2.458478e-06  max resid 4.483033e-06 
## ... Similar to previous best
## Run 467 stress 0.02991842 
## ... Procrustes: rmse 6.821609e-06  max resid 1.346729e-05 
## ... Similar to previous best
## Run 468 stress 0.02991843 
## ... Procrustes: rmse 1.594292e-05  max resid 3.007166e-05 
## ... Similar to previous best
## Run 469 stress 0.02991842 
## ... Procrustes: rmse 3.523167e-06  max resid 6.848842e-06 
## ... Similar to previous best
## Run 470 stress 0.02991842 
## ... Procrustes: rmse 9.166525e-07  max resid 2.541447e-06 
## ... Similar to previous best
## Run 471 stress 0.02991842 
## ... Procrustes: rmse 7.268619e-06  max resid 1.503545e-05 
## ... Similar to previous best
## Run 472 stress 0.03663708 
## Run 473 stress 0.02991842 
## ... Procrustes: rmse 1.324874e-05  max resid 2.6736e-05 
## ... Similar to previous best
## Run 474 stress 0.1147133 
## Run 475 stress 0.09023701 
## Run 476 stress 0.02991842 
## ... Procrustes: rmse 6.156631e-06  max resid 1.255164e-05 
## ... Similar to previous best
## Run 477 stress 0.02991842 
## ... Procrustes: rmse 5.27272e-06  max resid 1.066114e-05 
## ... Similar to previous best
## Run 478 stress 0.03663695 
## Run 479 stress 0.02991842 
## ... Procrustes: rmse 4.500819e-06  max resid 8.732012e-06 
## ... Similar to previous best
## Run 480 stress 0.09023702 
## Run 481 stress 0.02991842 
## ... Procrustes: rmse 5.639785e-06  max resid 1.167128e-05 
## ... Similar to previous best
## Run 482 stress 0.09169807 
## Run 483 stress 0.02991843 
## ... Procrustes: rmse 2.999747e-05  max resid 6.063022e-05 
## ... Similar to previous best
## Run 484 stress 0.02991842 
## ... Procrustes: rmse 4.247095e-06  max resid 9.778421e-06 
## ... Similar to previous best
## Run 485 stress 0.1110187 
## Run 486 stress 0.02991842 
## ... Procrustes: rmse 4.881085e-06  max resid 1.372691e-05 
## ... Similar to previous best
## Run 487 stress 0.02991842 
## ... Procrustes: rmse 4.182511e-06  max resid 7.775262e-06 
## ... Similar to previous best
## Run 488 stress 0.02991842 
## ... Procrustes: rmse 1.27842e-05  max resid 2.630615e-05 
## ... Similar to previous best
## Run 489 stress 0.03663694 
## Run 490 stress 0.1088093 
## Run 491 stress 0.02991842 
## ... Procrustes: rmse 1.143595e-05  max resid 2.323239e-05 
## ... Similar to previous best
## Run 492 stress 0.09023701 
## Run 493 stress 0.02991842 
## ... Procrustes: rmse 7.258613e-06  max resid 1.342979e-05 
## ... Similar to previous best
## Run 494 stress 0.09023701 
## Run 495 stress 0.02991843 
## ... Procrustes: rmse 2.412038e-05  max resid 4.881233e-05 
## ... Similar to previous best
## Run 496 stress 0.02991842 
## ... Procrustes: rmse 5.597535e-06  max resid 1.172841e-05 
## ... Similar to previous best
## Run 497 stress 0.09023701 
## Run 498 stress 0.09023701 
## Run 499 stress 0.02991842 
## ... Procrustes: rmse 1.319268e-05  max resid 2.646077e-05 
## ... Similar to previous best
## Run 500 stress 0.02991842 
## ... Procrustes: rmse 4.37106e-06  max resid 7.512648e-06 
## ... Similar to previous best
## *** Best solution repeated 168 times
# Mixed and stratified lakes
envems_NMDS <- metaMDS(envems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.03273609 
## Run 1 stress 0.1026254 
## Run 2 stress 0.0327361 
## ... Procrustes: rmse 2.014782e-05  max resid 6.291115e-05 
## ... Similar to previous best
## Run 3 stress 0.03273609 
## ... Procrustes: rmse 3.789677e-06  max resid 8.824544e-06 
## ... Similar to previous best
## Run 4 stress 0.03273609 
## ... Procrustes: rmse 8.557652e-06  max resid 2.222101e-05 
## ... Similar to previous best
## Run 5 stress 0.03273609 
## ... Procrustes: rmse 5.58586e-06  max resid 1.468844e-05 
## ... Similar to previous best
## Run 6 stress 0.03273609 
## ... Procrustes: rmse 5.01653e-06  max resid 1.002202e-05 
## ... Similar to previous best
## Run 7 stress 0.1026255 
## Run 8 stress 0.102538 
## Run 9 stress 0.03273609 
## ... Procrustes: rmse 7.389458e-06  max resid 1.985251e-05 
## ... Similar to previous best
## Run 10 stress 0.03273609 
## ... Procrustes: rmse 3.406543e-06  max resid 9.299371e-06 
## ... Similar to previous best
## Run 11 stress 0.1025379 
## Run 12 stress 0.03273609 
## ... Procrustes: rmse 4.331081e-06  max resid 1.148345e-05 
## ... Similar to previous best
## Run 13 stress 0.1382404 
## Run 14 stress 0.1025379 
## Run 15 stress 0.03273609 
## ... Procrustes: rmse 1.227913e-05  max resid 3.656083e-05 
## ... Similar to previous best
## Run 16 stress 0.03273609 
## ... Procrustes: rmse 4.143275e-06  max resid 8.895981e-06 
## ... Similar to previous best
## Run 17 stress 0.03273609 
## ... Procrustes: rmse 2.962695e-06  max resid 6.590173e-06 
## ... Similar to previous best
## Run 18 stress 0.1026254 
## Run 19 stress 0.03273609 
## ... New best solution
## ... Procrustes: rmse 1.855142e-06  max resid 4.309769e-06 
## ... Similar to previous best
## Run 20 stress 0.1025379 
## Run 21 stress 0.1026254 
## Run 22 stress 0.03273609 
## ... Procrustes: rmse 3.002152e-06  max resid 8.708534e-06 
## ... Similar to previous best
## Run 23 stress 0.1026254 
## Run 24 stress 0.03273609 
## ... Procrustes: rmse 8.21052e-06  max resid 2.449423e-05 
## ... Similar to previous best
## Run 25 stress 0.03273609 
## ... Procrustes: rmse 1.871134e-06  max resid 4.235371e-06 
## ... Similar to previous best
## Run 26 stress 0.03273609 
## ... Procrustes: rmse 6.195777e-06  max resid 1.848589e-05 
## ... Similar to previous best
## Run 27 stress 0.03273609 
## ... Procrustes: rmse 5.46445e-06  max resid 1.30263e-05 
## ... Similar to previous best
## Run 28 stress 0.03273609 
## ... Procrustes: rmse 7.731006e-06  max resid 2.339245e-05 
## ... Similar to previous best
## Run 29 stress 0.03273609 
## ... Procrustes: rmse 1.257467e-05  max resid 3.937125e-05 
## ... Similar to previous best
## Run 30 stress 0.03273609 
## ... Procrustes: rmse 4.013991e-06  max resid 1.172179e-05 
## ... Similar to previous best
## Run 31 stress 0.1026254 
## Run 32 stress 0.03273609 
## ... Procrustes: rmse 2.174845e-06  max resid 4.487961e-06 
## ... Similar to previous best
## Run 33 stress 0.03273609 
## ... Procrustes: rmse 3.253149e-06  max resid 8.557498e-06 
## ... Similar to previous best
## Run 34 stress 0.03273609 
## ... Procrustes: rmse 4.832016e-06  max resid 1.451613e-05 
## ... Similar to previous best
## Run 35 stress 0.1193634 
## Run 36 stress 0.0327361 
## ... Procrustes: rmse 1.418515e-05  max resid 4.387516e-05 
## ... Similar to previous best
## Run 37 stress 0.0327361 
## ... Procrustes: rmse 8.50605e-06  max resid 1.980564e-05 
## ... Similar to previous best
## Run 38 stress 0.1193633 
## Run 39 stress 0.1026254 
## Run 40 stress 0.1241389 
## Run 41 stress 0.1025379 
## Run 42 stress 0.03273609 
## ... Procrustes: rmse 2.702792e-06  max resid 6.223256e-06 
## ... Similar to previous best
## Run 43 stress 0.0327361 
## ... Procrustes: rmse 1.908137e-05  max resid 5.829503e-05 
## ... Similar to previous best
## Run 44 stress 0.0327361 
## ... Procrustes: rmse 1.861846e-05  max resid 5.675261e-05 
## ... Similar to previous best
## Run 45 stress 0.1025379 
## Run 46 stress 0.03273609 
## ... Procrustes: rmse 3.710211e-06  max resid 1.116426e-05 
## ... Similar to previous best
## Run 47 stress 0.1320372 
## Run 48 stress 0.102538 
## Run 49 stress 0.03273609 
## ... Procrustes: rmse 6.940964e-06  max resid 2.031885e-05 
## ... Similar to previous best
## Run 50 stress 0.03273609 
## ... Procrustes: rmse 1.032447e-05  max resid 3.1975e-05 
## ... Similar to previous best
## Run 51 stress 0.1241389 
## Run 52 stress 0.03273609 
## ... Procrustes: rmse 5.862576e-06  max resid 1.75824e-05 
## ... Similar to previous best
## Run 53 stress 0.1026254 
## Run 54 stress 0.1026254 
## Run 55 stress 0.0327361 
## ... Procrustes: rmse 1.812035e-05  max resid 5.628908e-05 
## ... Similar to previous best
## Run 56 stress 0.0327361 
## ... Procrustes: rmse 2.132863e-05  max resid 6.488839e-05 
## ... Similar to previous best
## Run 57 stress 0.03273609 
## ... Procrustes: rmse 6.284632e-06  max resid 1.872562e-05 
## ... Similar to previous best
## Run 58 stress 0.1026254 
## Run 59 stress 0.03273609 
## ... Procrustes: rmse 3.791775e-06  max resid 9.231266e-06 
## ... Similar to previous best
## Run 60 stress 0.03273609 
## ... Procrustes: rmse 1.22587e-06  max resid 2.829296e-06 
## ... Similar to previous best
## Run 61 stress 0.1025379 
## Run 62 stress 0.0327361 
## ... Procrustes: rmse 2.176436e-05  max resid 6.624425e-05 
## ... Similar to previous best
## Run 63 stress 0.03273609 
## ... Procrustes: rmse 4.27359e-06  max resid 1.195832e-05 
## ... Similar to previous best
## Run 64 stress 0.102538 
## Run 65 stress 0.03273609 
## ... Procrustes: rmse 4.160295e-06  max resid 1.242872e-05 
## ... Similar to previous best
## Run 66 stress 0.102538 
## Run 67 stress 0.03273609 
## ... Procrustes: rmse 1.30284e-06  max resid 2.533933e-06 
## ... Similar to previous best
## Run 68 stress 0.03273609 
## ... Procrustes: rmse 1.012589e-05  max resid 3.179808e-05 
## ... Similar to previous best
## Run 69 stress 0.03273609 
## ... Procrustes: rmse 6.971151e-06  max resid 2.201412e-05 
## ... Similar to previous best
## Run 70 stress 0.03273609 
## ... Procrustes: rmse 2.241879e-06  max resid 4.924643e-06 
## ... Similar to previous best
## Run 71 stress 0.1193633 
## Run 72 stress 0.1026254 
## Run 73 stress 0.03273609 
## ... Procrustes: rmse 5.013345e-06  max resid 1.339845e-05 
## ... Similar to previous best
## Run 74 stress 0.1320278 
## Run 75 stress 0.119189 
## Run 76 stress 0.03273609 
## ... Procrustes: rmse 9.746381e-06  max resid 2.939906e-05 
## ... Similar to previous best
## Run 77 stress 0.03273609 
## ... Procrustes: rmse 3.227104e-06  max resid 7.834673e-06 
## ... Similar to previous best
## Run 78 stress 0.03273611 
## ... Procrustes: rmse 1.434117e-05  max resid 3.244465e-05 
## ... Similar to previous best
## Run 79 stress 0.03273609 
## ... Procrustes: rmse 1.882385e-06  max resid 5.302782e-06 
## ... Similar to previous best
## Run 80 stress 0.0327361 
## ... Procrustes: rmse 9.680769e-06  max resid 2.958498e-05 
## ... Similar to previous best
## Run 81 stress 0.03273609 
## ... New best solution
## ... Procrustes: rmse 1.778302e-06  max resid 5.166974e-06 
## ... Similar to previous best
## Run 82 stress 0.03273609 
## ... Procrustes: rmse 4.195881e-06  max resid 1.221771e-05 
## ... Similar to previous best
## Run 83 stress 0.1025379 
## Run 84 stress 0.03273609 
## ... Procrustes: rmse 4.67389e-06  max resid 1.481953e-05 
## ... Similar to previous best
## Run 85 stress 0.03273609 
## ... Procrustes: rmse 1.533336e-06  max resid 2.6635e-06 
## ... Similar to previous best
## Run 86 stress 0.03273609 
## ... Procrustes: rmse 1.261108e-06  max resid 2.364629e-06 
## ... Similar to previous best
## Run 87 stress 0.03273609 
## ... Procrustes: rmse 2.710314e-06  max resid 7.044019e-06 
## ... Similar to previous best
## Run 88 stress 0.03273609 
## ... Procrustes: rmse 1.833781e-06  max resid 5.189235e-06 
## ... Similar to previous best
## Run 89 stress 0.1193633 
## Run 90 stress 0.1321015 
## Run 91 stress 0.0327361 
## ... Procrustes: rmse 2.297964e-05  max resid 6.966835e-05 
## ... Similar to previous best
## Run 92 stress 0.03273609 
## ... Procrustes: rmse 4.858467e-06  max resid 1.403223e-05 
## ... Similar to previous best
## Run 93 stress 0.1321013 
## Run 94 stress 0.1026255 
## Run 95 stress 0.03273609 
## ... Procrustes: rmse 9.97902e-06  max resid 2.973147e-05 
## ... Similar to previous best
## Run 96 stress 0.03273609 
## ... Procrustes: rmse 7.42018e-06  max resid 2.102758e-05 
## ... Similar to previous best
## Run 97 stress 0.03273609 
## ... Procrustes: rmse 7.06766e-06  max resid 2.019502e-05 
## ... Similar to previous best
## Run 98 stress 0.03273609 
## ... Procrustes: rmse 4.537336e-06  max resid 1.303849e-05 
## ... Similar to previous best
## Run 99 stress 0.1320278 
## Run 100 stress 0.03273609 
## ... Procrustes: rmse 3.122991e-06  max resid 9.493298e-06 
## ... Similar to previous best
## Run 101 stress 0.03273609 
## ... Procrustes: rmse 1.022645e-06  max resid 2.117727e-06 
## ... Similar to previous best
## Run 102 stress 0.03273609 
## ... Procrustes: rmse 6.494098e-06  max resid 1.615071e-05 
## ... Similar to previous best
## Run 103 stress 0.1388864 
## Run 104 stress 0.1026254 
## Run 105 stress 0.0327361 
## ... Procrustes: rmse 1.681393e-05  max resid 4.897326e-05 
## ... Similar to previous best
## Run 106 stress 0.03273609 
## ... Procrustes: rmse 4.827075e-06  max resid 1.275137e-05 
## ... Similar to previous best
## Run 107 stress 0.03273609 
## ... Procrustes: rmse 8.784702e-06  max resid 2.570441e-05 
## ... Similar to previous best
## Run 108 stress 0.03273609 
## ... Procrustes: rmse 4.847515e-06  max resid 1.539143e-05 
## ... Similar to previous best
## Run 109 stress 0.03273609 
## ... Procrustes: rmse 3.487745e-06  max resid 1.109187e-05 
## ... Similar to previous best
## Run 110 stress 0.03273609 
## ... Procrustes: rmse 4.711093e-06  max resid 1.306223e-05 
## ... Similar to previous best
## Run 111 stress 0.03273609 
## ... Procrustes: rmse 4.809319e-06  max resid 1.243903e-05 
## ... Similar to previous best
## Run 112 stress 0.03273609 
## ... Procrustes: rmse 5.666473e-06  max resid 1.506622e-05 
## ... Similar to previous best
## Run 113 stress 0.03273609 
## ... Procrustes: rmse 2.897989e-06  max resid 7.144584e-06 
## ... Similar to previous best
## Run 114 stress 0.03273609 
## ... New best solution
## ... Procrustes: rmse 1.311593e-06  max resid 2.691743e-06 
## ... Similar to previous best
## Run 115 stress 0.03273609 
## ... Procrustes: rmse 3.125292e-06  max resid 8.160987e-06 
## ... Similar to previous best
## Run 116 stress 0.1321885 
## Run 117 stress 0.03273609 
## ... Procrustes: rmse 7.419303e-06  max resid 2.220763e-05 
## ... Similar to previous best
## Run 118 stress 0.1193633 
## Run 119 stress 0.03273609 
## ... Procrustes: rmse 6.20418e-06  max resid 1.871504e-05 
## ... Similar to previous best
## Run 120 stress 0.0327361 
## ... Procrustes: rmse 2.268264e-05  max resid 6.962524e-05 
## ... Similar to previous best
## Run 121 stress 0.03273609 
## ... Procrustes: rmse 2.512045e-06  max resid 3.909584e-06 
## ... Similar to previous best
## Run 122 stress 0.03273609 
## ... New best solution
## ... Procrustes: rmse 1.300788e-06  max resid 3.240907e-06 
## ... Similar to previous best
## Run 123 stress 0.1380724 
## Run 124 stress 0.03273609 
## ... Procrustes: rmse 3.990315e-06  max resid 1.1532e-05 
## ... Similar to previous best
## Run 125 stress 0.03273609 
## ... Procrustes: rmse 3.211907e-06  max resid 7.671212e-06 
## ... Similar to previous best
## Run 126 stress 0.123904 
## Run 127 stress 0.03273609 
## ... Procrustes: rmse 3.100323e-06  max resid 8.673785e-06 
## ... Similar to previous best
## Run 128 stress 0.03273609 
## ... Procrustes: rmse 5.348409e-06  max resid 1.486818e-05 
## ... Similar to previous best
## Run 129 stress 0.03273609 
## ... Procrustes: rmse 3.046572e-06  max resid 9.373607e-06 
## ... Similar to previous best
## Run 130 stress 0.03273609 
## ... Procrustes: rmse 4.837166e-06  max resid 1.125324e-05 
## ... Similar to previous best
## Run 131 stress 0.03273609 
## ... Procrustes: rmse 9.679592e-06  max resid 2.976943e-05 
## ... Similar to previous best
## Run 132 stress 0.1026254 
## Run 133 stress 0.03273609 
## ... Procrustes: rmse 4.362461e-06  max resid 1.301304e-05 
## ... Similar to previous best
## Run 134 stress 0.03273609 
## ... Procrustes: rmse 4.676766e-06  max resid 1.351412e-05 
## ... Similar to previous best
## Run 135 stress 0.1389214 
## Run 136 stress 0.102538 
## Run 137 stress 0.03273609 
## ... Procrustes: rmse 3.994826e-06  max resid 1.207485e-05 
## ... Similar to previous best
## Run 138 stress 0.03273609 
## ... Procrustes: rmse 2.057204e-06  max resid 5.866774e-06 
## ... Similar to previous best
## Run 139 stress 0.03273609 
## ... Procrustes: rmse 6.328092e-06  max resid 1.931479e-05 
## ... Similar to previous best
## Run 140 stress 0.0327361 
## ... Procrustes: rmse 1.250865e-05  max resid 3.748532e-05 
## ... Similar to previous best
## Run 141 stress 0.1025379 
## Run 142 stress 0.1025379 
## Run 143 stress 0.03273609 
## ... Procrustes: rmse 6.340014e-06  max resid 1.91063e-05 
## ... Similar to previous best
## Run 144 stress 0.03273609 
## ... Procrustes: rmse 9.302938e-07  max resid 2.226842e-06 
## ... Similar to previous best
## Run 145 stress 0.1025379 
## Run 146 stress 0.1025379 
## Run 147 stress 0.351023 
## Run 148 stress 0.03273609 
## ... Procrustes: rmse 8.334324e-06  max resid 2.283965e-05 
## ... Similar to previous best
## Run 149 stress 0.03273609 
## ... Procrustes: rmse 5.549912e-06  max resid 1.621959e-05 
## ... Similar to previous best
## Run 150 stress 0.1026254 
## Run 151 stress 0.03273609 
## ... Procrustes: rmse 3.559429e-06  max resid 9.550395e-06 
## ... Similar to previous best
## Run 152 stress 0.03273609 
## ... Procrustes: rmse 5.183013e-06  max resid 1.470576e-05 
## ... Similar to previous best
## Run 153 stress 0.03273609 
## ... Procrustes: rmse 3.53028e-06  max resid 1.041439e-05 
## ... Similar to previous best
## Run 154 stress 0.03273609 
## ... Procrustes: rmse 2.001656e-06  max resid 5.365189e-06 
## ... Similar to previous best
## Run 155 stress 0.03273609 
## ... Procrustes: rmse 6.539634e-06  max resid 2.089649e-05 
## ... Similar to previous best
## Run 156 stress 0.0327361 
## ... Procrustes: rmse 1.863414e-05  max resid 5.674036e-05 
## ... Similar to previous best
## Run 157 stress 0.0327361 
## ... Procrustes: rmse 1.328387e-05  max resid 4.299977e-05 
## ... Similar to previous best
## Run 158 stress 0.03273609 
## ... Procrustes: rmse 4.537089e-06  max resid 1.384574e-05 
## ... Similar to previous best
## Run 159 stress 0.03273609 
## ... Procrustes: rmse 3.704254e-06  max resid 9.418667e-06 
## ... Similar to previous best
## Run 160 stress 0.03273609 
## ... Procrustes: rmse 7.737659e-06  max resid 2.467069e-05 
## ... Similar to previous best
## Run 161 stress 0.03273609 
## ... Procrustes: rmse 2.702012e-06  max resid 7.926672e-06 
## ... Similar to previous best
## Run 162 stress 0.1025379 
## Run 163 stress 0.03273609 
## ... Procrustes: rmse 1.611036e-06  max resid 4.070694e-06 
## ... Similar to previous best
## Run 164 stress 0.03273609 
## ... Procrustes: rmse 1.64622e-06  max resid 4.018309e-06 
## ... Similar to previous best
## Run 165 stress 0.03273609 
## ... Procrustes: rmse 8.63012e-06  max resid 2.759943e-05 
## ... Similar to previous best
## Run 166 stress 0.03273609 
## ... Procrustes: rmse 7.386126e-06  max resid 1.717081e-05 
## ... Similar to previous best
## Run 167 stress 0.1193634 
## Run 168 stress 0.03273609 
## ... Procrustes: rmse 4.442702e-06  max resid 1.432267e-05 
## ... Similar to previous best
## Run 169 stress 0.03273609 
## ... Procrustes: rmse 5.025433e-06  max resid 1.494073e-05 
## ... Similar to previous best
## Run 170 stress 0.03273609 
## ... Procrustes: rmse 4.354437e-06  max resid 1.30248e-05 
## ... Similar to previous best
## Run 171 stress 0.03273609 
## ... Procrustes: rmse 1.682368e-06  max resid 4.589307e-06 
## ... Similar to previous best
## Run 172 stress 0.03273609 
## ... Procrustes: rmse 4.870607e-06  max resid 1.397912e-05 
## ... Similar to previous best
## Run 173 stress 0.03273609 
## ... Procrustes: rmse 2.462025e-06  max resid 4.68409e-06 
## ... Similar to previous best
## Run 174 stress 0.03273609 
## ... Procrustes: rmse 4.194551e-06  max resid 1.249752e-05 
## ... Similar to previous best
## Run 175 stress 0.0327361 
## ... Procrustes: rmse 1.00299e-05  max resid 3.013304e-05 
## ... Similar to previous best
## Run 176 stress 0.03273609 
## ... Procrustes: rmse 1.282063e-06  max resid 3.136817e-06 
## ... Similar to previous best
## Run 177 stress 0.119189 
## Run 178 stress 0.03273609 
## ... Procrustes: rmse 3.614225e-06  max resid 7.494197e-06 
## ... Similar to previous best
## Run 179 stress 0.3591107 
## Run 180 stress 0.03273609 
## ... Procrustes: rmse 1.628527e-06  max resid 3.692491e-06 
## ... Similar to previous best
## Run 181 stress 0.1026254 
## Run 182 stress 0.03273609 
## ... Procrustes: rmse 3.448874e-06  max resid 1.001435e-05 
## ... Similar to previous best
## Run 183 stress 0.0327361 
## ... Procrustes: rmse 1.535928e-05  max resid 4.43667e-05 
## ... Similar to previous best
## Run 184 stress 0.03273609 
## ... Procrustes: rmse 7.51332e-06  max resid 2.412047e-05 
## ... Similar to previous best
## Run 185 stress 0.03273609 
## ... Procrustes: rmse 4.312564e-06  max resid 1.339217e-05 
## ... Similar to previous best
## Run 186 stress 0.03273609 
## ... Procrustes: rmse 1.201566e-06  max resid 2.595358e-06 
## ... Similar to previous best
## Run 187 stress 0.03273609 
## ... Procrustes: rmse 3.663951e-06  max resid 9.113969e-06 
## ... Similar to previous best
## Run 188 stress 0.03273609 
## ... Procrustes: rmse 3.555241e-06  max resid 9.433549e-06 
## ... Similar to previous best
## Run 189 stress 0.1025379 
## Run 190 stress 0.0327361 
## ... Procrustes: rmse 1.50579e-05  max resid 4.667386e-05 
## ... Similar to previous best
## Run 191 stress 0.03273609 
## ... Procrustes: rmse 5.041484e-06  max resid 1.45e-05 
## ... Similar to previous best
## Run 192 stress 0.102538 
## Run 193 stress 0.03273609 
## ... Procrustes: rmse 2.147904e-06  max resid 5.870666e-06 
## ... Similar to previous best
## Run 194 stress 0.03273609 
## ... New best solution
## ... Procrustes: rmse 4.176148e-07  max resid 1.028518e-06 
## ... Similar to previous best
## Run 195 stress 0.1026254 
## Run 196 stress 0.03273609 
## ... Procrustes: rmse 1.73549e-06  max resid 5.272568e-06 
## ... Similar to previous best
## Run 197 stress 0.03273609 
## ... Procrustes: rmse 5.633069e-06  max resid 1.638239e-05 
## ... Similar to previous best
## Run 198 stress 0.1026254 
## Run 199 stress 0.1193633 
## Run 200 stress 0.03273609 
## ... Procrustes: rmse 4.6813e-06  max resid 1.041823e-05 
## ... Similar to previous best
## Run 201 stress 0.03273609 
## ... Procrustes: rmse 3.553029e-06  max resid 8.014526e-06 
## ... Similar to previous best
## Run 202 stress 0.03273609 
## ... Procrustes: rmse 5.551219e-06  max resid 1.587286e-05 
## ... Similar to previous best
## Run 203 stress 0.03273609 
## ... Procrustes: rmse 1.143832e-05  max resid 3.539612e-05 
## ... Similar to previous best
## Run 204 stress 0.03273609 
## ... Procrustes: rmse 1.733089e-06  max resid 3.929766e-06 
## ... Similar to previous best
## Run 205 stress 0.1025379 
## Run 206 stress 0.03273609 
## ... Procrustes: rmse 2.970316e-06  max resid 8.796539e-06 
## ... Similar to previous best
## Run 207 stress 0.03273609 
## ... Procrustes: rmse 5.328352e-06  max resid 1.606892e-05 
## ... Similar to previous best
## Run 208 stress 0.1193633 
## Run 209 stress 0.03273609 
## ... Procrustes: rmse 1.994221e-06  max resid 5.931792e-06 
## ... Similar to previous best
## Run 210 stress 0.03273609 
## ... Procrustes: rmse 3.683082e-06  max resid 1.01485e-05 
## ... Similar to previous best
## Run 211 stress 0.03273609 
## ... Procrustes: rmse 3.898361e-06  max resid 1.162526e-05 
## ... Similar to previous best
## Run 212 stress 0.03273609 
## ... Procrustes: rmse 2.097104e-06  max resid 6.396411e-06 
## ... Similar to previous best
## Run 213 stress 0.1239147 
## Run 214 stress 0.0327361 
## ... Procrustes: rmse 5.148436e-06  max resid 1.089144e-05 
## ... Similar to previous best
## Run 215 stress 0.03273609 
## ... Procrustes: rmse 6.719565e-06  max resid 1.465769e-05 
## ... Similar to previous best
## Run 216 stress 0.0327361 
## ... Procrustes: rmse 9.247205e-06  max resid 2.791061e-05 
## ... Similar to previous best
## Run 217 stress 0.03273609 
## ... Procrustes: rmse 5.47044e-06  max resid 1.7201e-05 
## ... Similar to previous best
## Run 218 stress 0.0327361 
## ... Procrustes: rmse 1.701779e-05  max resid 5.197717e-05 
## ... Similar to previous best
## Run 219 stress 0.03273609 
## ... Procrustes: rmse 1.096464e-05  max resid 3.327262e-05 
## ... Similar to previous best
## Run 220 stress 0.03273609 
## ... Procrustes: rmse 4.792394e-06  max resid 1.459979e-05 
## ... Similar to previous best
## Run 221 stress 0.0327361 
## ... Procrustes: rmse 2.070369e-05  max resid 5.866064e-05 
## ... Similar to previous best
## Run 222 stress 0.0327361 
## ... Procrustes: rmse 2.728557e-05  max resid 8.544609e-05 
## ... Similar to previous best
## Run 223 stress 0.03273609 
## ... Procrustes: rmse 5.164596e-06  max resid 1.637263e-05 
## ... Similar to previous best
## Run 224 stress 0.1026254 
## Run 225 stress 0.119189 
## Run 226 stress 0.03273609 
## ... Procrustes: rmse 1.126411e-05  max resid 3.408828e-05 
## ... Similar to previous best
## Run 227 stress 0.1026254 
## Run 228 stress 0.1239147 
## Run 229 stress 0.03273609 
## ... Procrustes: rmse 1.834474e-06  max resid 5.03816e-06 
## ... Similar to previous best
## Run 230 stress 0.1239041 
## Run 231 stress 0.1382404 
## Run 232 stress 0.03273609 
## ... Procrustes: rmse 8.71134e-06  max resid 2.749788e-05 
## ... Similar to previous best
## Run 233 stress 0.1026254 
## Run 234 stress 0.1026254 
## Run 235 stress 0.1026254 
## Run 236 stress 0.03273609 
## ... Procrustes: rmse 1.205038e-06  max resid 2.540011e-06 
## ... Similar to previous best
## Run 237 stress 0.03273609 
## ... Procrustes: rmse 3.474809e-06  max resid 8.043409e-06 
## ... Similar to previous best
## Run 238 stress 0.119189 
## Run 239 stress 0.03273609 
## ... Procrustes: rmse 1.961913e-06  max resid 5.680669e-06 
## ... Similar to previous best
## Run 240 stress 0.1025379 
## Run 241 stress 0.1026254 
## Run 242 stress 0.03273609 
## ... Procrustes: rmse 2.565368e-06  max resid 7.331376e-06 
## ... Similar to previous best
## Run 243 stress 0.03273609 
## ... Procrustes: rmse 5.674992e-06  max resid 1.690994e-05 
## ... Similar to previous best
## Run 244 stress 0.03273609 
## ... Procrustes: rmse 6.639637e-06  max resid 2.006759e-05 
## ... Similar to previous best
## Run 245 stress 0.03273609 
## ... Procrustes: rmse 5.784872e-06  max resid 1.819886e-05 
## ... Similar to previous best
## Run 246 stress 0.03273609 
## ... Procrustes: rmse 5.686148e-06  max resid 1.452959e-05 
## ... Similar to previous best
## Run 247 stress 0.03273609 
## ... Procrustes: rmse 2.263239e-06  max resid 5.736892e-06 
## ... Similar to previous best
## Run 248 stress 0.03273609 
## ... Procrustes: rmse 7.780151e-07  max resid 2.126071e-06 
## ... Similar to previous best
## Run 249 stress 0.1320278 
## Run 250 stress 0.03273609 
## ... Procrustes: rmse 4.366593e-06  max resid 1.310546e-05 
## ... Similar to previous best
## Run 251 stress 0.0327361 
## ... Procrustes: rmse 1.09609e-05  max resid 3.307252e-05 
## ... Similar to previous best
## Run 252 stress 0.03273609 
## ... Procrustes: rmse 6.032142e-06  max resid 1.65998e-05 
## ... Similar to previous best
## Run 253 stress 0.0327361 
## ... Procrustes: rmse 2.493857e-05  max resid 7.727561e-05 
## ... Similar to previous best
## Run 254 stress 0.1025379 
## Run 255 stress 0.03273609 
## ... Procrustes: rmse 5.017139e-06  max resid 1.515765e-05 
## ... Similar to previous best
## Run 256 stress 0.1025379 
## Run 257 stress 0.03273609 
## ... Procrustes: rmse 2.552566e-06  max resid 7.547066e-06 
## ... Similar to previous best
## Run 258 stress 0.03273609 
## ... Procrustes: rmse 9.422766e-06  max resid 2.927999e-05 
## ... Similar to previous best
## Run 259 stress 0.3075686 
## Run 260 stress 0.03273609 
## ... Procrustes: rmse 8.904008e-06  max resid 2.751431e-05 
## ... Similar to previous best
## Run 261 stress 0.1193633 
## Run 262 stress 0.03273609 
## ... Procrustes: rmse 9.952549e-06  max resid 3.044924e-05 
## ... Similar to previous best
## Run 263 stress 0.03273609 
## ... Procrustes: rmse 2.57389e-06  max resid 5.516817e-06 
## ... Similar to previous best
## Run 264 stress 0.1025379 
## Run 265 stress 0.03273609 
## ... Procrustes: rmse 3.611741e-06  max resid 7.875376e-06 
## ... Similar to previous best
## Run 266 stress 0.0327361 
## ... Procrustes: rmse 1.254245e-05  max resid 3.725088e-05 
## ... Similar to previous best
## Run 267 stress 0.1026254 
## Run 268 stress 0.03273609 
## ... Procrustes: rmse 2.436508e-06  max resid 5.782898e-06 
## ... Similar to previous best
## Run 269 stress 0.1025379 
## Run 270 stress 0.03273609 
## ... Procrustes: rmse 4.448465e-06  max resid 1.130396e-05 
## ... Similar to previous best
## Run 271 stress 0.0327361 
## ... Procrustes: rmse 1.237811e-05  max resid 3.751761e-05 
## ... Similar to previous best
## Run 272 stress 0.03273609 
## ... Procrustes: rmse 2.459276e-06  max resid 7.133599e-06 
## ... Similar to previous best
## Run 273 stress 0.03273609 
## ... Procrustes: rmse 7.188115e-06  max resid 2.152407e-05 
## ... Similar to previous best
## Run 274 stress 0.0327361 
## ... Procrustes: rmse 1.52234e-05  max resid 4.511578e-05 
## ... Similar to previous best
## Run 275 stress 0.03273609 
## ... Procrustes: rmse 4.634945e-06  max resid 1.425042e-05 
## ... Similar to previous best
## Run 276 stress 0.03273609 
## ... Procrustes: rmse 3.013092e-06  max resid 7.622958e-06 
## ... Similar to previous best
## Run 277 stress 0.1193634 
## Run 278 stress 0.03273609 
## ... Procrustes: rmse 6.743134e-06  max resid 2.122277e-05 
## ... Similar to previous best
## Run 279 stress 0.1320373 
## Run 280 stress 0.03273609 
## ... Procrustes: rmse 2.982243e-06  max resid 8.256156e-06 
## ... Similar to previous best
## Run 281 stress 0.03273609 
## ... Procrustes: rmse 2.048361e-06  max resid 6.170249e-06 
## ... Similar to previous best
## Run 282 stress 0.03273609 
## ... Procrustes: rmse 6.585561e-06  max resid 2.019177e-05 
## ... Similar to previous best
## Run 283 stress 0.03273609 
## ... Procrustes: rmse 1.523607e-06  max resid 4.266775e-06 
## ... Similar to previous best
## Run 284 stress 0.1239147 
## Run 285 stress 0.03273609 
## ... Procrustes: rmse 2.172729e-06  max resid 6.051095e-06 
## ... Similar to previous best
## Run 286 stress 0.1382405 
## Run 287 stress 0.03273609 
## ... Procrustes: rmse 2.803763e-06  max resid 8.625548e-06 
## ... Similar to previous best
## Run 288 stress 0.119189 
## Run 289 stress 0.102538 
## Run 290 stress 0.102538 
## Run 291 stress 0.1026255 
## Run 292 stress 0.102538 
## Run 293 stress 0.1193633 
## Run 294 stress 0.03273609 
## ... Procrustes: rmse 5.376185e-06  max resid 1.686168e-05 
## ... Similar to previous best
## Run 295 stress 0.0327361 
## ... Procrustes: rmse 3.59751e-06  max resid 7.183176e-06 
## ... Similar to previous best
## Run 296 stress 0.102538 
## Run 297 stress 0.03273609 
## ... Procrustes: rmse 2.729448e-06  max resid 7.532442e-06 
## ... Similar to previous best
## Run 298 stress 0.03273609 
## ... Procrustes: rmse 2.159184e-06  max resid 5.800295e-06 
## ... Similar to previous best
## Run 299 stress 0.03273609 
## ... Procrustes: rmse 4.330674e-06  max resid 1.225572e-05 
## ... Similar to previous best
## Run 300 stress 0.03273609 
## ... Procrustes: rmse 5.77288e-06  max resid 1.776209e-05 
## ... Similar to previous best
## Run 301 stress 0.0327361 
## ... Procrustes: rmse 9.915152e-06  max resid 2.97933e-05 
## ... Similar to previous best
## Run 302 stress 0.03273609 
## ... Procrustes: rmse 2.379892e-06  max resid 5.927751e-06 
## ... Similar to previous best
## Run 303 stress 0.03273609 
## ... Procrustes: rmse 4.139706e-06  max resid 1.230664e-05 
## ... Similar to previous best
## Run 304 stress 0.0327361 
## ... Procrustes: rmse 9.393644e-06  max resid 2.380388e-05 
## ... Similar to previous best
## Run 305 stress 0.03273609 
## ... Procrustes: rmse 5.663657e-06  max resid 1.692658e-05 
## ... Similar to previous best
## Run 306 stress 0.03273609 
## ... Procrustes: rmse 3.731735e-06  max resid 1.186188e-05 
## ... Similar to previous best
## Run 307 stress 0.03273609 
## ... Procrustes: rmse 2.87733e-06  max resid 5.783717e-06 
## ... Similar to previous best
## Run 308 stress 0.1026254 
## Run 309 stress 0.0327361 
## ... Procrustes: rmse 1.661769e-05  max resid 5.115195e-05 
## ... Similar to previous best
## Run 310 stress 0.03273609 
## ... Procrustes: rmse 5.163978e-06  max resid 1.610943e-05 
## ... Similar to previous best
## Run 311 stress 0.03273609 
## ... Procrustes: rmse 2.224703e-06  max resid 5.774503e-06 
## ... Similar to previous best
## Run 312 stress 0.03273609 
## ... Procrustes: rmse 5.04221e-06  max resid 1.491075e-05 
## ... Similar to previous best
## Run 313 stress 0.03273609 
## ... Procrustes: rmse 4.464962e-06  max resid 1.144232e-05 
## ... Similar to previous best
## Run 314 stress 0.0327361 
## ... Procrustes: rmse 2.58063e-05  max resid 7.954802e-05 
## ... Similar to previous best
## Run 315 stress 0.03273609 
## ... Procrustes: rmse 1.323889e-06  max resid 3.244421e-06 
## ... Similar to previous best
## Run 316 stress 0.1026255 
## Run 317 stress 0.1389215 
## Run 318 stress 0.03273609 
## ... Procrustes: rmse 2.420688e-06  max resid 7.646508e-06 
## ... Similar to previous best
## Run 319 stress 0.03273609 
## ... Procrustes: rmse 2.36179e-06  max resid 6.90797e-06 
## ... Similar to previous best
## Run 320 stress 0.0327361 
## ... Procrustes: rmse 1.258421e-05  max resid 3.744479e-05 
## ... Similar to previous best
## Run 321 stress 0.1026254 
## Run 322 stress 0.1026254 
## Run 323 stress 0.03273609 
## ... Procrustes: rmse 4.762582e-06  max resid 1.192188e-05 
## ... Similar to previous best
## Run 324 stress 0.03273609 
## ... Procrustes: rmse 3.851721e-06  max resid 1.201191e-05 
## ... Similar to previous best
## Run 325 stress 0.03273609 
## ... Procrustes: rmse 4.913695e-06  max resid 1.08596e-05 
## ... Similar to previous best
## Run 326 stress 0.03273609 
## ... Procrustes: rmse 4.528327e-06  max resid 1.104738e-05 
## ... Similar to previous best
## Run 327 stress 0.03273609 
## ... Procrustes: rmse 5.414833e-06  max resid 1.660528e-05 
## ... Similar to previous best
## Run 328 stress 0.03273609 
## ... Procrustes: rmse 4.269373e-06  max resid 1.299122e-05 
## ... Similar to previous best
## Run 329 stress 0.03273609 
## ... Procrustes: rmse 2.858424e-06  max resid 7.948347e-06 
## ... Similar to previous best
## Run 330 stress 0.03273609 
## ... Procrustes: rmse 3.653781e-06  max resid 1.076476e-05 
## ... Similar to previous best
## Run 331 stress 0.03273609 
## ... Procrustes: rmse 1.443746e-06  max resid 3.117505e-06 
## ... Similar to previous best
## Run 332 stress 0.0327361 
## ... Procrustes: rmse 5.199148e-06  max resid 1.099245e-05 
## ... Similar to previous best
## Run 333 stress 0.123904 
## Run 334 stress 0.03273609 
## ... Procrustes: rmse 5.58445e-06  max resid 1.428199e-05 
## ... Similar to previous best
## Run 335 stress 0.1193633 
## Run 336 stress 0.03273609 
## ... Procrustes: rmse 2.026784e-06  max resid 4.133671e-06 
## ... Similar to previous best
## Run 337 stress 0.1025379 
## Run 338 stress 0.03273609 
## ... Procrustes: rmse 4.407755e-06  max resid 1.32061e-05 
## ... Similar to previous best
## Run 339 stress 0.1025379 
## Run 340 stress 0.0327361 
## ... Procrustes: rmse 1.663041e-05  max resid 5.084815e-05 
## ... Similar to previous best
## Run 341 stress 0.03273609 
## ... Procrustes: rmse 5.479907e-06  max resid 1.61636e-05 
## ... Similar to previous best
## Run 342 stress 0.03273609 
## ... Procrustes: rmse 4.235886e-06  max resid 1.311145e-05 
## ... Similar to previous best
## Run 343 stress 0.03273609 
## ... Procrustes: rmse 6.356196e-06  max resid 1.946746e-05 
## ... Similar to previous best
## Run 344 stress 0.102538 
## Run 345 stress 0.1026254 
## Run 346 stress 0.03273609 
## ... Procrustes: rmse 6.016378e-06  max resid 1.557909e-05 
## ... Similar to previous best
## Run 347 stress 0.0327361 
## ... Procrustes: rmse 6.631259e-06  max resid 1.715027e-05 
## ... Similar to previous best
## Run 348 stress 0.03273609 
## ... Procrustes: rmse 2.890328e-06  max resid 8.655616e-06 
## ... Similar to previous best
## Run 349 stress 0.1241389 
## Run 350 stress 0.03273609 
## ... Procrustes: rmse 2.102233e-06  max resid 6.22689e-06 
## ... Similar to previous best
## Run 351 stress 0.03273609 
## ... Procrustes: rmse 7.368263e-07  max resid 2.010642e-06 
## ... Similar to previous best
## Run 352 stress 0.03273609 
## ... Procrustes: rmse 6.135889e-06  max resid 1.671441e-05 
## ... Similar to previous best
## Run 353 stress 0.1026254 
## Run 354 stress 0.03273609 
## ... Procrustes: rmse 4.862372e-06  max resid 1.557289e-05 
## ... Similar to previous best
## Run 355 stress 0.03273609 
## ... Procrustes: rmse 1.16244e-05  max resid 3.556732e-05 
## ... Similar to previous best
## Run 356 stress 0.03273609 
## ... Procrustes: rmse 4.983195e-06  max resid 1.386059e-05 
## ... Similar to previous best
## Run 357 stress 0.1026254 
## Run 358 stress 0.03273609 
## ... Procrustes: rmse 1.905143e-06  max resid 5.338013e-06 
## ... Similar to previous best
## Run 359 stress 0.1193633 
## Run 360 stress 0.03273609 
## ... Procrustes: rmse 3.752564e-06  max resid 1.111506e-05 
## ... Similar to previous best
## Run 361 stress 0.03273609 
## ... Procrustes: rmse 8.557808e-06  max resid 2.712815e-05 
## ... Similar to previous best
## Run 362 stress 0.03273609 
## ... Procrustes: rmse 4.424586e-06  max resid 1.257257e-05 
## ... Similar to previous best
## Run 363 stress 0.0327361 
## ... Procrustes: rmse 1.61112e-05  max resid 4.960432e-05 
## ... Similar to previous best
## Run 364 stress 0.03273609 
## ... Procrustes: rmse 3.255825e-06  max resid 1.027294e-05 
## ... Similar to previous best
## Run 365 stress 0.03273609 
## ... Procrustes: rmse 2.532918e-06  max resid 7.469272e-06 
## ... Similar to previous best
## Run 366 stress 0.119189 
## Run 367 stress 0.102538 
## Run 368 stress 0.1026255 
## Run 369 stress 0.1026254 
## Run 370 stress 0.1025379 
## Run 371 stress 0.03273609 
## ... Procrustes: rmse 1.86358e-06  max resid 5.708662e-06 
## ... Similar to previous best
## Run 372 stress 0.03273609 
## ... Procrustes: rmse 4.28738e-06  max resid 1.116633e-05 
## ... Similar to previous best
## Run 373 stress 0.03273609 
## ... Procrustes: rmse 3.132814e-06  max resid 8.803817e-06 
## ... Similar to previous best
## Run 374 stress 0.03273609 
## ... Procrustes: rmse 1.29503e-06  max resid 4.038999e-06 
## ... Similar to previous best
## Run 375 stress 0.03273609 
## ... Procrustes: rmse 5.48552e-06  max resid 1.551617e-05 
## ... Similar to previous best
## Run 376 stress 0.0327361 
## ... Procrustes: rmse 2.228402e-05  max resid 6.675026e-05 
## ... Similar to previous best
## Run 377 stress 0.1239148 
## Run 378 stress 0.1026254 
## Run 379 stress 0.03273609 
## ... Procrustes: rmse 9.309612e-06  max resid 2.247421e-05 
## ... Similar to previous best
## Run 380 stress 0.03273609 
## ... Procrustes: rmse 6.522704e-06  max resid 2.03885e-05 
## ... Similar to previous best
## Run 381 stress 0.03273609 
## ... Procrustes: rmse 2.169156e-06  max resid 5.020621e-06 
## ... Similar to previous best
## Run 382 stress 0.03273609 
## ... Procrustes: rmse 7.565091e-07  max resid 1.316075e-06 
## ... Similar to previous best
## Run 383 stress 0.03273609 
## ... Procrustes: rmse 4.062634e-06  max resid 1.051185e-05 
## ... Similar to previous best
## Run 384 stress 0.1026255 
## Run 385 stress 0.1026254 
## Run 386 stress 0.03273609 
## ... Procrustes: rmse 2.477441e-06  max resid 6.700553e-06 
## ... Similar to previous best
## Run 387 stress 0.03273609 
## ... Procrustes: rmse 7.074115e-06  max resid 2.155912e-05 
## ... Similar to previous best
## Run 388 stress 0.03273609 
## ... Procrustes: rmse 1.037609e-05  max resid 3.248998e-05 
## ... Similar to previous best
## Run 389 stress 0.119189 
## Run 390 stress 0.124139 
## Run 391 stress 0.0327361 
## ... Procrustes: rmse 1.378645e-05  max resid 4.203822e-05 
## ... Similar to previous best
## Run 392 stress 0.1025379 
## Run 393 stress 0.1382404 
## Run 394 stress 0.0327361 
## ... Procrustes: rmse 1.199947e-05  max resid 3.70805e-05 
## ... Similar to previous best
## Run 395 stress 0.1025379 
## Run 396 stress 0.03273609 
## ... Procrustes: rmse 4.549214e-06  max resid 1.402129e-05 
## ... Similar to previous best
## Run 397 stress 0.1239147 
## Run 398 stress 0.03273609 
## ... Procrustes: rmse 7.624999e-06  max resid 2.370894e-05 
## ... Similar to previous best
## Run 399 stress 0.1026254 
## Run 400 stress 0.1026254 
## Run 401 stress 0.03273609 
## ... Procrustes: rmse 1.782403e-06  max resid 5.10772e-06 
## ... Similar to previous best
## Run 402 stress 0.03273609 
## ... Procrustes: rmse 8.813266e-06  max resid 2.727746e-05 
## ... Similar to previous best
## Run 403 stress 0.03273609 
## ... Procrustes: rmse 6.759323e-07  max resid 1.267771e-06 
## ... Similar to previous best
## Run 404 stress 0.1025379 
## Run 405 stress 0.1025379 
## Run 406 stress 0.03273609 
## ... Procrustes: rmse 1.411669e-06  max resid 3.630858e-06 
## ... Similar to previous best
## Run 407 stress 0.1026254 
## Run 408 stress 0.03273609 
## ... Procrustes: rmse 1.343735e-06  max resid 2.313816e-06 
## ... Similar to previous best
## Run 409 stress 0.1026254 
## Run 410 stress 0.1026254 
## Run 411 stress 0.03273609 
## ... Procrustes: rmse 3.131731e-06  max resid 9.884913e-06 
## ... Similar to previous best
## Run 412 stress 0.0327361 
## ... Procrustes: rmse 1.133164e-05  max resid 2.592931e-05 
## ... Similar to previous best
## Run 413 stress 0.1026254 
## Run 414 stress 0.1025379 
## Run 415 stress 0.03273609 
## ... Procrustes: rmse 4.709947e-06  max resid 1.255103e-05 
## ... Similar to previous best
## Run 416 stress 0.03273609 
## ... Procrustes: rmse 7.251479e-06  max resid 2.088932e-05 
## ... Similar to previous best
## Run 417 stress 0.03273609 
## ... Procrustes: rmse 5.599821e-06  max resid 1.755535e-05 
## ... Similar to previous best
## Run 418 stress 0.03273609 
## ... Procrustes: rmse 2.812782e-06  max resid 7.386901e-06 
## ... Similar to previous best
## Run 419 stress 0.1025379 
## Run 420 stress 0.03273609 
## ... Procrustes: rmse 1.161891e-06  max resid 2.805006e-06 
## ... Similar to previous best
## Run 421 stress 0.03273609 
## ... Procrustes: rmse 5.216616e-06  max resid 1.557057e-05 
## ... Similar to previous best
## Run 422 stress 0.03273609 
## ... Procrustes: rmse 1.774725e-06  max resid 3.399965e-06 
## ... Similar to previous best
## Run 423 stress 0.03273609 
## ... Procrustes: rmse 4.683533e-06  max resid 1.444488e-05 
## ... Similar to previous best
## Run 424 stress 0.1026254 
## Run 425 stress 0.1026254 
## Run 426 stress 0.03273609 
## ... Procrustes: rmse 5.604004e-06  max resid 1.693361e-05 
## ... Similar to previous best
## Run 427 stress 0.1025379 
## Run 428 stress 0.1026255 
## Run 429 stress 0.1241389 
## Run 430 stress 0.03273609 
## ... Procrustes: rmse 5.208333e-06  max resid 1.356333e-05 
## ... Similar to previous best
## Run 431 stress 0.119189 
## Run 432 stress 0.03273609 
## ... Procrustes: rmse 3.328965e-06  max resid 1.011279e-05 
## ... Similar to previous best
## Run 433 stress 0.0327361 
## ... Procrustes: rmse 1.180648e-05  max resid 3.326966e-05 
## ... Similar to previous best
## Run 434 stress 0.03273609 
## ... Procrustes: rmse 3.714587e-06  max resid 9.257622e-06 
## ... Similar to previous best
## Run 435 stress 0.03273609 
## ... Procrustes: rmse 3.277131e-06  max resid 9.784098e-06 
## ... Similar to previous best
## Run 436 stress 0.03273609 
## ... Procrustes: rmse 1.619679e-06  max resid 4.346195e-06 
## ... Similar to previous best
## Run 437 stress 0.03273609 
## ... Procrustes: rmse 4.386807e-06  max resid 1.220562e-05 
## ... Similar to previous best
## Run 438 stress 0.03273609 
## ... Procrustes: rmse 4.461803e-07  max resid 6.594348e-07 
## ... Similar to previous best
## Run 439 stress 0.03273609 
## ... Procrustes: rmse 6.795105e-06  max resid 2.107082e-05 
## ... Similar to previous best
## Run 440 stress 0.0327361 
## ... Procrustes: rmse 1.541858e-05  max resid 4.792882e-05 
## ... Similar to previous best
## Run 441 stress 0.03273609 
## ... Procrustes: rmse 6.02371e-06  max resid 1.860828e-05 
## ... Similar to previous best
## Run 442 stress 0.1026254 
## Run 443 stress 0.03273609 
## ... Procrustes: rmse 3.224985e-06  max resid 1.04575e-05 
## ... Similar to previous best
## Run 444 stress 0.03273609 
## ... Procrustes: rmse 8.899058e-06  max resid 2.774766e-05 
## ... Similar to previous best
## Run 445 stress 0.03273609 
## ... Procrustes: rmse 3.132254e-06  max resid 9.714767e-06 
## ... Similar to previous best
## Run 446 stress 0.0327361 
## ... Procrustes: rmse 1.16477e-05  max resid 3.64949e-05 
## ... Similar to previous best
## Run 447 stress 0.03273609 
## ... Procrustes: rmse 4.37645e-06  max resid 1.455529e-05 
## ... Similar to previous best
## Run 448 stress 0.0327361 
## ... Procrustes: rmse 2.070463e-05  max resid 6.250997e-05 
## ... Similar to previous best
## Run 449 stress 0.03273609 
## ... Procrustes: rmse 2.101364e-06  max resid 6.417735e-06 
## ... Similar to previous best
## Run 450 stress 0.1026254 
## Run 451 stress 0.0327361 
## ... Procrustes: rmse 1.67303e-05  max resid 5.160718e-05 
## ... Similar to previous best
## Run 452 stress 0.03273609 
## ... Procrustes: rmse 4.969646e-06  max resid 1.535292e-05 
## ... Similar to previous best
## Run 453 stress 0.03273609 
## ... Procrustes: rmse 1.484303e-06  max resid 4.390206e-06 
## ... Similar to previous best
## Run 454 stress 0.1026254 
## Run 455 stress 0.1025381 
## Run 456 stress 0.03273609 
## ... Procrustes: rmse 3.493141e-06  max resid 8.964235e-06 
## ... Similar to previous best
## Run 457 stress 0.03273609 
## ... Procrustes: rmse 1.05513e-05  max resid 3.319179e-05 
## ... Similar to previous best
## Run 458 stress 0.03273609 
## ... Procrustes: rmse 3.580994e-06  max resid 1.055737e-05 
## ... Similar to previous best
## Run 459 stress 0.03273609 
## ... Procrustes: rmse 4.532921e-06  max resid 1.369286e-05 
## ... Similar to previous best
## Run 460 stress 0.03273609 
## ... Procrustes: rmse 3.008118e-06  max resid 8.232466e-06 
## ... Similar to previous best
## Run 461 stress 0.03273609 
## ... Procrustes: rmse 5.173157e-06  max resid 1.016316e-05 
## ... Similar to previous best
## Run 462 stress 0.03273609 
## ... Procrustes: rmse 4.403355e-06  max resid 1.282222e-05 
## ... Similar to previous best
## Run 463 stress 0.03273609 
## ... Procrustes: rmse 9.713546e-06  max resid 2.370282e-05 
## ... Similar to previous best
## Run 464 stress 0.03273609 
## ... Procrustes: rmse 5.000612e-06  max resid 1.461566e-05 
## ... Similar to previous best
## Run 465 stress 0.03273609 
## ... Procrustes: rmse 3.488312e-06  max resid 9.625365e-06 
## ... Similar to previous best
## Run 466 stress 0.03273609 
## ... Procrustes: rmse 9.865902e-07  max resid 2.649324e-06 
## ... Similar to previous best
## Run 467 stress 0.03273609 
## ... Procrustes: rmse 5.35036e-06  max resid 1.632638e-05 
## ... Similar to previous best
## Run 468 stress 0.0327361 
## ... Procrustes: rmse 1.82891e-05  max resid 5.704489e-05 
## ... Similar to previous best
## Run 469 stress 0.03273609 
## ... Procrustes: rmse 3.00409e-06  max resid 7.973463e-06 
## ... Similar to previous best
## Run 470 stress 0.03273609 
## ... Procrustes: rmse 1.948751e-06  max resid 5.949458e-06 
## ... Similar to previous best
## Run 471 stress 0.03273609 
## ... Procrustes: rmse 7.952226e-06  max resid 2.258835e-05 
## ... Similar to previous best
## Run 472 stress 0.1026254 
## Run 473 stress 0.03273609 
## ... Procrustes: rmse 6.120083e-06  max resid 1.869139e-05 
## ... Similar to previous best
## Run 474 stress 0.1320278 
## Run 475 stress 0.03273609 
## ... Procrustes: rmse 6.260614e-06  max resid 1.94765e-05 
## ... Similar to previous best
## Run 476 stress 0.03273609 
## ... Procrustes: rmse 4.852423e-06  max resid 1.159723e-05 
## ... Similar to previous best
## Run 477 stress 0.03273609 
## ... Procrustes: rmse 1.940998e-06  max resid 5.208785e-06 
## ... Similar to previous best
## Run 478 stress 0.03273609 
## ... Procrustes: rmse 2.103282e-06  max resid 5.552324e-06 
## ... Similar to previous best
## Run 479 stress 0.0327361 
## ... Procrustes: rmse 2.679306e-05  max resid 7.800851e-05 
## ... Similar to previous best
## Run 480 stress 0.03273609 
## ... Procrustes: rmse 5.627232e-06  max resid 1.495437e-05 
## ... Similar to previous best
## Run 481 stress 0.03273609 
## ... Procrustes: rmse 3.252313e-06  max resid 7.344249e-06 
## ... Similar to previous best
## Run 482 stress 0.1239138 
## Run 483 stress 0.03273609 
## ... Procrustes: rmse 4.130935e-06  max resid 1.15693e-05 
## ... Similar to previous best
## Run 484 stress 0.03273609 
## ... Procrustes: rmse 1.097042e-05  max resid 3.369157e-05 
## ... Similar to previous best
## Run 485 stress 0.03273609 
## ... Procrustes: rmse 4.930576e-06  max resid 1.471301e-05 
## ... Similar to previous best
## Run 486 stress 0.03273609 
## ... Procrustes: rmse 2.75271e-06  max resid 6.154859e-06 
## ... Similar to previous best
## Run 487 stress 0.03273613 
## ... Procrustes: rmse 3.328873e-05  max resid 9.597701e-05 
## ... Similar to previous best
## Run 488 stress 0.03273609 
## ... Procrustes: rmse 1.135175e-06  max resid 3.572808e-06 
## ... Similar to previous best
## Run 489 stress 0.1239147 
## Run 490 stress 0.124139 
## Run 491 stress 0.1239144 
## Run 492 stress 0.03273609 
## ... Procrustes: rmse 5.56613e-06  max resid 1.729447e-05 
## ... Similar to previous best
## Run 493 stress 0.03273609 
## ... Procrustes: rmse 5.19199e-06  max resid 1.464477e-05 
## ... Similar to previous best
## Run 494 stress 0.1026254 
## Run 495 stress 0.03273609 
## ... Procrustes: rmse 7.641592e-06  max resid 2.300815e-05 
## ... Similar to previous best
## Run 496 stress 0.03273609 
## ... Procrustes: rmse 7.828677e-06  max resid 2.415286e-05 
## ... Similar to previous best
## Run 497 stress 0.1025379 
## Run 498 stress 0.0327361 
## ... Procrustes: rmse 1.773506e-05  max resid 5.481289e-05 
## ... Similar to previous best
## Run 499 stress 0.1026253 
## Run 500 stress 0.03273609 
## ... Procrustes: rmse 6.164117e-06  max resid 1.889164e-05 
## ... Similar to previous best
## *** Best solution repeated 211 times
# Ocean sites and mixed lakes
enveom_NMDS <- metaMDS(enveom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 9.489756e-05 
## Run 1 stress 9.918246e-05 
## ... Procrustes: rmse 0.01529358  max resid 0.02534253 
## Run 2 stress 0.002338113 
## Run 3 stress 0.00233812 
## Run 4 stress 0.002338114 
## Run 5 stress 0.0001266962 
## ... Procrustes: rmse 0.01492996  max resid 0.02383158 
## Run 6 stress 0.1773328 
## Run 7 stress 9.299582e-05 
## ... New best solution
## ... Procrustes: rmse 0.01615758  max resid 0.02945311 
## Run 8 stress 0.2452429 
## Run 9 stress 9.51619e-05 
## ... Procrustes: rmse 0.02334778  max resid 0.04110853 
## Run 10 stress 9.988801e-05 
## ... Procrustes: rmse 0.003468875  max resid 0.006098973 
## ... Similar to previous best
## Run 11 stress 0.002338121 
## Run 12 stress 9.994014e-05 
## ... Procrustes: rmse 0.01820849  max resid 0.04463759 
## Run 13 stress 9.998657e-05 
## ... Procrustes: rmse 0.003444915  max resid 0.006079729 
## ... Similar to previous best
## Run 14 stress 0.002338128 
## Run 15 stress 9.581594e-05 
## ... Procrustes: rmse 0.02003386  max resid 0.03527761 
## Run 16 stress 0.002338121 
## Run 17 stress 9.994882e-05 
## ... Procrustes: rmse 0.001918082  max resid 0.003026217 
## ... Similar to previous best
## Run 18 stress 0.000100964 
## ... Procrustes: rmse 0.003464208  max resid 0.006125628 
## ... Similar to previous best
## Run 19 stress 9.963139e-05 
## ... Procrustes: rmse 0.02121094  max resid 0.0358703 
## Run 20 stress 0.0001012952 
## ... Procrustes: rmse 0.00348333  max resid 0.006200753 
## ... Similar to previous best
## Run 21 stress 9.683966e-05 
## ... Procrustes: rmse 0.03312339  max resid 0.07191829 
## Run 22 stress 0.0001011302 
## ... Procrustes: rmse 0.003488663  max resid 0.006165135 
## ... Similar to previous best
## Run 23 stress 0.0001029916 
## ... Procrustes: rmse 0.003686717  max resid 0.006568317 
## ... Similar to previous best
## Run 24 stress 0.002338108 
## Run 25 stress 0.002338129 
## Run 26 stress 0.002338103 
## Run 27 stress 0.002338109 
## Run 28 stress 0.002338115 
## Run 29 stress 0.002338122 
## Run 30 stress 0.00233812 
## Run 31 stress 8.757713e-05 
## ... New best solution
## ... Procrustes: rmse 0.03311747  max resid 0.07153082 
## Run 32 stress 0.002338102 
## Run 33 stress 9.986099e-05 
## ... Procrustes: rmse 0.03065183  max resid 0.06740168 
## Run 34 stress 0.2556143 
## Run 35 stress 9.952061e-05 
## ... Procrustes: rmse 0.01937533  max resid 0.03440931 
## Run 36 stress 9.853358e-05 
## ... Procrustes: rmse 0.03405624  max resid 0.07285084 
## Run 37 stress 9.620011e-05 
## ... Procrustes: rmse 0.03472107  max resid 0.07140983 
## Run 38 stress 0.002338104 
## Run 39 stress 0.002338115 
## Run 40 stress 0.002338114 
## Run 41 stress 0.002338118 
## Run 42 stress 0.002338117 
## Run 43 stress 0.0001833456 
## ... Procrustes: rmse 0.02605027  max resid 0.05820748 
## Run 44 stress 0.0001008362 
## ... Procrustes: rmse 0.03071607  max resid 0.06751919 
## Run 45 stress 0.002338122 
## Run 46 stress 0.002338117 
## Run 47 stress 0.002338097 
## Run 48 stress 0.002338111 
## Run 49 stress 0.0001310699 
## ... Procrustes: rmse 0.02927053  max resid 0.06503404 
## Run 50 stress 9.518877e-05 
## ... Procrustes: rmse 0.03077446  max resid 0.05493085 
## Run 51 stress 9.992378e-05 
## ... Procrustes: rmse 0.03077083  max resid 0.06755942 
## Run 52 stress 9.931638e-05 
## ... Procrustes: rmse 0.003261029  max resid 0.006257843 
## ... Similar to previous best
## Run 53 stress 0.002338114 
## Run 54 stress 9.356369e-05 
## ... Procrustes: rmse 0.01684052  max resid 0.0263602 
## Run 55 stress 0.0001034301 
## ... Procrustes: rmse 0.03068978  max resid 0.06742265 
## Run 56 stress 0.0001642478 
## ... Procrustes: rmse 0.02400984  max resid 0.05750021 
## Run 57 stress 0.1773328 
## Run 58 stress 9.979936e-05 
## ... Procrustes: rmse 0.03199599  max resid 0.0697039 
## Run 59 stress 9.954595e-05 
## ... Procrustes: rmse 0.02388341  max resid 0.03752808 
## Run 60 stress 0.0001128788 
## ... Procrustes: rmse 0.03021195  max resid 0.06666317 
## Run 61 stress 9.967872e-05 
## ... Procrustes: rmse 0.01951093  max resid 0.03925764 
## Run 62 stress 0.0001000095 
## ... Procrustes: rmse 0.0307626  max resid 0.06756609 
## Run 63 stress 0.3407338 
## Run 64 stress 9.984854e-05 
## ... Procrustes: rmse 0.03088131  max resid 0.06777447 
## Run 65 stress 7.383966e-05 
## ... New best solution
## ... Procrustes: rmse 0.01068106  max resid 0.02885574 
## Run 66 stress 9.967155e-05 
## ... Procrustes: rmse 0.02182356  max resid 0.04007107 
## Run 67 stress 9.260365e-05 
## ... Procrustes: rmse 0.01048289  max resid 0.02565476 
## Run 68 stress 0.002338123 
## Run 69 stress 0.00233811 
## Run 70 stress 9.957568e-05 
## ... Procrustes: rmse 0.01061495  max resid 0.02877772 
## Run 71 stress 9.930005e-05 
## ... Procrustes: rmse 0.01890491  max resid 0.02678239 
## Run 72 stress 0.1773328 
## Run 73 stress 9.955638e-05 
## ... Procrustes: rmse 0.02252599  max resid 0.03512424 
## Run 74 stress 9.958419e-05 
## ... Procrustes: rmse 0.01164326  max resid 0.02080817 
## Run 75 stress 9.402781e-05 
## ... Procrustes: rmse 0.01013087  max resid 0.01932047 
## Run 76 stress 9.09701e-05 
## ... Procrustes: rmse 0.01063234  max resid 0.02870083 
## Run 77 stress 0.00233812 
## Run 78 stress 0.1773328 
## Run 79 stress 0.002338122 
## Run 80 stress 9.983325e-05 
## ... Procrustes: rmse 0.009659994  max resid 0.02021684 
## Run 81 stress 0.0001684121 
## ... Procrustes: rmse 0.01780275  max resid 0.03322742 
## Run 82 stress 0.1773328 
## Run 83 stress 0.002338119 
## Run 84 stress 0.002338122 
## Run 85 stress 0.00233813 
## Run 86 stress 9.907035e-05 
## ... Procrustes: rmse 0.01368449  max resid 0.02043953 
## Run 87 stress 9.849976e-05 
## ... Procrustes: rmse 0.02546703  max resid 0.04044859 
## Run 88 stress 0.002338119 
## Run 89 stress 0.002338123 
## Run 90 stress 9.357091e-05 
## ... Procrustes: rmse 0.005696003  max resid 0.01160514 
## Run 91 stress 0.00233812 
## Run 92 stress 9.972318e-05 
## ... Procrustes: rmse 0.0267766  max resid 0.04733354 
## Run 93 stress 0.002338119 
## Run 94 stress 0.002338093 
## Run 95 stress 0.00233812 
## Run 96 stress 0.0001859151 
## ... Procrustes: rmse 0.01698626  max resid 0.03125852 
## Run 97 stress 0.00233812 
## Run 98 stress 9.93877e-05 
## ... Procrustes: rmse 0.0191199  max resid 0.02710917 
## Run 99 stress 0.1773328 
## Run 100 stress 0.002338125 
## Run 101 stress 9.921029e-05 
## ... Procrustes: rmse 0.02607799  max resid 0.04241351 
## Run 102 stress 0.1773328 
## Run 103 stress 0.002338098 
## Run 104 stress 0.002338113 
## Run 105 stress 9.282001e-05 
## ... Procrustes: rmse 0.01112126  max resid 0.03034865 
## Run 106 stress 0.002338117 
## Run 107 stress 0.002338126 
## Run 108 stress 9.977925e-05 
## ... Procrustes: rmse 0.01113561  max resid 0.01737075 
## Run 109 stress 0.002338123 
## Run 110 stress 0.002338122 
## Run 111 stress 0.002338105 
## Run 112 stress 0.002338114 
## Run 113 stress 0.002338106 
## Run 114 stress 0.002338117 
## Run 115 stress 0.002338119 
## Run 116 stress 9.96868e-05 
## ... Procrustes: rmse 0.01072706  max resid 0.02901102 
## Run 117 stress 9.978916e-05 
## ... Procrustes: rmse 0.01215864  max resid 0.02000368 
## Run 118 stress 9.84174e-05 
## ... Procrustes: rmse 0.0244364  max resid 0.03804195 
## Run 119 stress 9.628567e-05 
## ... Procrustes: rmse 0.01012352  max resid 0.0257101 
## Run 120 stress 0.2363691 
## Run 121 stress 9.986169e-05 
## ... Procrustes: rmse 0.01447809  max resid 0.0221124 
## Run 122 stress 9.714249e-05 
## ... Procrustes: rmse 0.01899456  max resid 0.02669529 
## Run 123 stress 0.002338122 
## Run 124 stress 0.0001714223 
## ... Procrustes: rmse 0.01615638  max resid 0.02917364 
## Run 125 stress 9.99961e-05 
## ... Procrustes: rmse 0.01010753  max resid 0.02593132 
## Run 126 stress 0.002338111 
## Run 127 stress 0.002338119 
## Run 128 stress 9.945231e-05 
## ... Procrustes: rmse 0.01018126  max resid 0.02617107 
## Run 129 stress 0.1773328 
## Run 130 stress 0.0001057312 
## ... Procrustes: rmse 0.02116886  max resid 0.03903956 
## Run 131 stress 0.1773328 
## Run 132 stress 0.002338126 
## Run 133 stress 0.002338116 
## Run 134 stress 0.0001759163 
## ... Procrustes: rmse 0.0176659  max resid 0.03295192 
## Run 135 stress 9.963239e-05 
## ... Procrustes: rmse 0.01326456  max resid 0.02188796 
## Run 136 stress 0.0001002143 
## ... Procrustes: rmse 0.02115603  max resid 0.03904213 
## Run 137 stress 9.903179e-05 
## ... Procrustes: rmse 0.01938099  max resid 0.02743644 
## Run 138 stress 0.0001612178 
## ... Procrustes: rmse 0.01657181  max resid 0.03159126 
## Run 139 stress 0.0001066535 
## ... Procrustes: rmse 0.02113975  max resid 0.03902746 
## Run 140 stress 9.984019e-05 
## ... Procrustes: rmse 0.01332586  max resid 0.02051778 
## Run 141 stress 9.563565e-05 
## ... Procrustes: rmse 0.0109748  max resid 0.02992942 
## Run 142 stress 0.00233813 
## Run 143 stress 0.002338114 
## Run 144 stress 9.827452e-05 
## ... Procrustes: rmse 0.00782624  max resid 0.01665922 
## Run 145 stress 0.002338122 
## Run 146 stress 9.990668e-05 
## ... Procrustes: rmse 0.02084901  max resid 0.03851955 
## Run 147 stress 0.3407334 
## Run 148 stress 0.00233811 
## Run 149 stress 0.2538542 
## Run 150 stress 0.00010024 
## ... Procrustes: rmse 0.02113643  max resid 0.0390172 
## Run 151 stress 9.202601e-05 
## ... Procrustes: rmse 0.01061951  max resid 0.02735753 
## Run 152 stress 0.002338115 
## Run 153 stress 0.3275206 
## Run 154 stress 9.712203e-05 
## ... Procrustes: rmse 0.002778874  max resid 0.005513749 
## ... Similar to previous best
## Run 155 stress 0.002338123 
## Run 156 stress 9.983707e-05 
## ... Procrustes: rmse 0.01410523  max resid 0.02187237 
## Run 157 stress 0.002338118 
## Run 158 stress 0.0001107407 
## ... Procrustes: rmse 0.01036886  max resid 0.02306548 
## Run 159 stress 9.532674e-05 
## ... Procrustes: rmse 0.01096064  max resid 0.02061917 
## Run 160 stress 0.002338122 
## Run 161 stress 0.002338118 
## Run 162 stress 0.0001003917 
## ... Procrustes: rmse 0.02118507  max resid 0.03903097 
## Run 163 stress 0.00233809 
## Run 164 stress 0.0001823516 
## ... Procrustes: rmse 0.01702858  max resid 0.03160183 
## Run 165 stress 9.992116e-05 
## ... Procrustes: rmse 0.007575286  max resid 0.01862963 
## Run 166 stress 0.002338112 
## Run 167 stress 0.002338115 
## Run 168 stress 9.98124e-05 
## ... Procrustes: rmse 0.0115293  max resid 0.0289416 
## Run 169 stress 8.673557e-05 
## ... Procrustes: rmse 0.01041983  max resid 0.02630407 
## Run 170 stress 0.0001053433 
## ... Procrustes: rmse 0.02117231  max resid 0.03906855 
## Run 171 stress 0.0001003302 
## ... Procrustes: rmse 0.02111417  max resid 0.03896459 
## Run 172 stress 9.866941e-05 
## ... Procrustes: rmse 0.01095255  max resid 0.02989206 
## Run 173 stress 0.002338127 
## Run 174 stress 9.953843e-05 
## ... Procrustes: rmse 0.01056256  max resid 0.02845988 
## Run 175 stress 0.0001029941 
## ... Procrustes: rmse 0.02102281  max resid 0.03880663 
## Run 176 stress 0.00233813 
## Run 177 stress 0.00233812 
## Run 178 stress 0.1773328 
## Run 179 stress 0.002338118 
## Run 180 stress 9.747923e-05 
## ... Procrustes: rmse 0.02253153  max resid 0.03515224 
## Run 181 stress 0.0001829404 
## ... Procrustes: rmse 0.01694791  max resid 0.03073266 
## Run 182 stress 0.1773328 
## Run 183 stress 0.00233811 
## Run 184 stress 0.002338126 
## Run 185 stress 9.752811e-05 
## ... Procrustes: rmse 0.01076552  max resid 0.02918171 
## Run 186 stress 0.002338119 
## Run 187 stress 9.911902e-05 
## ... Procrustes: rmse 0.01259691  max resid 0.02239808 
## Run 188 stress 0.000162586 
## ... Procrustes: rmse 0.01751449  max resid 0.03367646 
## Run 189 stress 0.0001608119 
## ... Procrustes: rmse 0.01823262  max resid 0.03407676 
## Run 190 stress 9.814449e-05 
## ... Procrustes: rmse 0.008503691  max resid 0.02240245 
## Run 191 stress 0.002338122 
## Run 192 stress 9.245367e-05 
## ... Procrustes: rmse 0.01219029  max resid 0.01989605 
## Run 193 stress 0.1773328 
## Run 194 stress 0.0001042936 
## ... Procrustes: rmse 0.021133  max resid 0.03895529 
## Run 195 stress 0.002338129 
## Run 196 stress 0.34037 
## Run 197 stress 9.744161e-05 
## ... Procrustes: rmse 0.02366545  max resid 0.03847714 
## Run 198 stress 0.0001058547 
## ... Procrustes: rmse 0.021092  max resid 0.03896602 
## Run 199 stress 0.002338118 
## Run 200 stress 0.002338118 
## Run 201 stress 9.588187e-05 
## ... Procrustes: rmse 0.01018809  max resid 0.01715293 
## Run 202 stress 9.614519e-05 
## ... Procrustes: rmse 0.01063674  max resid 0.02784709 
## Run 203 stress 9.215562e-05 
## ... Procrustes: rmse 0.01077206  max resid 0.02922607 
## Run 204 stress 0.002338104 
## Run 205 stress 0.2368142 
## Run 206 stress 9.995419e-05 
## ... Procrustes: rmse 0.02109259  max resid 0.03890339 
## Run 207 stress 0.002338123 
## Run 208 stress 9.946265e-05 
## ... Procrustes: rmse 0.01480039  max resid 0.02565473 
## Run 209 stress 8.762925e-05 
## ... Procrustes: rmse 0.006490792  max resid 0.0161841 
## Run 210 stress 0.2438929 
## Run 211 stress 9.935799e-05 
## ... Procrustes: rmse 0.02242946  max resid 0.03489752 
## Run 212 stress 9.662137e-05 
## ... Procrustes: rmse 0.02160441  max resid 0.03283106 
## Run 213 stress 0.3403702 
## Run 214 stress 9.192168e-05 
## ... Procrustes: rmse 0.01023436  max resid 0.02491924 
## Run 215 stress 9.621369e-05 
## ... Procrustes: rmse 0.003531835  max resid 0.005938146 
## ... Similar to previous best
## Run 216 stress 0.002338114 
## Run 217 stress 9.409349e-05 
## ... Procrustes: rmse 0.0105284  max resid 0.02694689 
## Run 218 stress 0.00233812 
## Run 219 stress 0.002338115 
## Run 220 stress 0.3275199 
## Run 221 stress 0.0001698885 
## ... Procrustes: rmse 0.01797402  max resid 0.03356746 
## Run 222 stress 9.102131e-05 
## ... Procrustes: rmse 0.0109555  max resid 0.01644603 
## Run 223 stress 0.002338094 
## Run 224 stress 9.59268e-05 
## ... Procrustes: rmse 0.006920472  max resid 0.01390379 
## Run 225 stress 8.632931e-05 
## ... Procrustes: rmse 0.01054738  max resid 0.02846295 
## Run 226 stress 0.0001070685 
## ... Procrustes: rmse 0.02110075  max resid 0.03897101 
## Run 227 stress 9.486762e-05 
## ... Procrustes: rmse 0.003085167  max resid 0.004841247 
## ... Similar to previous best
## Run 228 stress 0.0001122141 
## ... Procrustes: rmse 0.0211407  max resid 0.03904213 
## Run 229 stress 9.682389e-05 
## ... Procrustes: rmse 0.00556339  max resid 0.01086029 
## Run 230 stress 0.0001234378 
## ... Procrustes: rmse 0.02005862  max resid 0.03731375 
## Run 231 stress 9.330084e-05 
## ... Procrustes: rmse 0.01031897  max resid 0.02153476 
## Run 232 stress 0.002338111 
## Run 233 stress 0.0001155597 
## ... Procrustes: rmse 0.02069444  max resid 0.03833632 
## Run 234 stress 9.658973e-05 
## ... Procrustes: rmse 0.01676762  max resid 0.03268352 
## Run 235 stress 0.002338109 
## Run 236 stress 9.647932e-05 
## ... Procrustes: rmse 0.01088865  max resid 0.02947422 
## Run 237 stress 0.1773328 
## Run 238 stress 9.573239e-05 
## ... Procrustes: rmse 0.01124353  max resid 0.03095101 
## Run 239 stress 0.1773328 
## Run 240 stress 0.002338116 
## Run 241 stress 0.002338114 
## Run 242 stress 0.002338115 
## Run 243 stress 0.0001004752 
## ... Procrustes: rmse 0.0211484  max resid 0.03897089 
## Run 244 stress 9.989306e-05 
## ... Procrustes: rmse 0.02129982  max resid 0.03924075 
## Run 245 stress 9.058094e-05 
## ... Procrustes: rmse 0.009836146  max resid 0.02420498 
## Run 246 stress 0.000130635 
## ... Procrustes: rmse 0.01177508  max resid 0.02296562 
## Run 247 stress 8.847656e-05 
## ... Procrustes: rmse 0.006507316  max resid 0.01642607 
## Run 248 stress 9.435423e-05 
## ... Procrustes: rmse 0.01094617  max resid 0.02985583 
## Run 249 stress 0.0001409738 
## ... Procrustes: rmse 0.01137317  max resid 0.0170026 
## Run 250 stress 0.002338113 
## Run 251 stress 0.002338119 
## Run 252 stress 0.002338112 
## Run 253 stress 9.341773e-05 
## ... Procrustes: rmse 0.008380682  max resid 0.02208891 
## Run 254 stress 9.979683e-05 
## ... Procrustes: rmse 0.02115872  max resid 0.03904246 
## Run 255 stress 0.002338103 
## Run 256 stress 0.0001059123 
## ... Procrustes: rmse 0.0211741  max resid 0.0390841 
## Run 257 stress 0.002338105 
## Run 258 stress 0.0001794589 
## ... Procrustes: rmse 0.01688912  max resid 0.03139746 
## Run 259 stress 0.002338115 
## Run 260 stress 0.0001524751 
## ... Procrustes: rmse 0.01739788  max resid 0.03339832 
## Run 261 stress 9.780353e-05 
## ... Procrustes: rmse 0.02635019  max resid 0.04455315 
## Run 262 stress 0.002338106 
## Run 263 stress 0.002338117 
## Run 264 stress 9.936861e-05 
## ... Procrustes: rmse 0.01233697  max resid 0.0180398 
## Run 265 stress 9.997828e-05 
## ... Procrustes: rmse 0.02151732  max resid 0.03963541 
## Run 266 stress 0.002338113 
## Run 267 stress 9.963698e-05 
## ... Procrustes: rmse 0.02105549  max resid 0.03888209 
## Run 268 stress 0.0001011569 
## ... Procrustes: rmse 0.02083224  max resid 0.03856433 
## Run 269 stress 0.002338119 
## Run 270 stress 0.002338095 
## Run 271 stress 0.002338105 
## Run 272 stress 9.560704e-05 
## ... Procrustes: rmse 0.0106645  max resid 0.02727198 
## Run 273 stress 9.957897e-05 
## ... Procrustes: rmse 0.02410386  max resid 0.04376525 
## Run 274 stress 9.484857e-05 
## ... Procrustes: rmse 0.01917114  max resid 0.02792823 
## Run 275 stress 0.0001665603 
## ... Procrustes: rmse 0.01775621  max resid 0.0331441 
## Run 276 stress 0.002338114 
## Run 277 stress 9.241508e-05 
## ... Procrustes: rmse 0.01112307  max resid 0.02800626 
## Run 278 stress 0.0001071981 
## ... Procrustes: rmse 0.0208356  max resid 0.03852103 
## Run 279 stress 0.002338117 
## Run 280 stress 0.0001488205 
## ... Procrustes: rmse 0.01832352  max resid 0.03530309 
## Run 281 stress 0.002338116 
## Run 282 stress 0.002338129 
## Run 283 stress 0.002338108 
## Run 284 stress 0.002338113 
## Run 285 stress 0.2447261 
## Run 286 stress 0.1773328 
## Run 287 stress 0.002338122 
## Run 288 stress 0.0001027602 
## ... Procrustes: rmse 0.02108635  max resid 0.03892354 
## Run 289 stress 0.002338122 
## Run 290 stress 9.951476e-05 
## ... Procrustes: rmse 0.01143555  max resid 0.01951556 
## Run 291 stress 9.984221e-05 
## ... Procrustes: rmse 0.02283298  max resid 0.04124004 
## Run 292 stress 9.566409e-05 
## ... Procrustes: rmse 0.01062251  max resid 0.02326777 
## Run 293 stress 0.0023381 
## Run 294 stress 9.994678e-05 
## ... Procrustes: rmse 0.01053605  max resid 0.02675003 
## Run 295 stress 0.002338121 
## Run 296 stress 9.947056e-05 
## ... Procrustes: rmse 0.02232291  max resid 0.03464609 
## Run 297 stress 8.987346e-05 
## ... Procrustes: rmse 0.01059028  max resid 0.02721679 
## Run 298 stress 9.99691e-05 
## ... Procrustes: rmse 0.02116141  max resid 0.03902401 
## Run 299 stress 0.00233812 
## Run 300 stress 9.452449e-05 
## ... Procrustes: rmse 0.008845964  max resid 0.02243648 
## Run 301 stress 0.0001005286 
## ... Procrustes: rmse 0.02112413  max resid 0.03901584 
## Run 302 stress 0.002338113 
## Run 303 stress 8.731821e-05 
## ... Procrustes: rmse 0.00196852  max resid 0.004859445 
## ... Similar to previous best
## Run 304 stress 9.912861e-05 
## ... Procrustes: rmse 0.02191532  max resid 0.03362149 
## Run 305 stress 0.002338122 
## Run 306 stress 0.002338112 
## Run 307 stress 0.1773328 
## Run 308 stress 9.768501e-05 
## ... Procrustes: rmse 0.0107889  max resid 0.0292286 
## Run 309 stress 0.002338098 
## Run 310 stress 0.002338114 
## Run 311 stress 9.968975e-05 
## ... Procrustes: rmse 0.009536654  max resid 0.02280973 
## Run 312 stress 9.998294e-05 
## ... Procrustes: rmse 0.01538136  max resid 0.0234475 
## Run 313 stress 9.983064e-05 
## ... Procrustes: rmse 0.02171542  max resid 0.03994096 
## Run 314 stress 9.8121e-05 
## ... Procrustes: rmse 0.006553391  max resid 0.01254021 
## Run 315 stress 0.0001003525 
## ... Procrustes: rmse 0.02114245  max resid 0.03899165 
## Run 316 stress 0.002338123 
## Run 317 stress 9.990698e-05 
## ... Procrustes: rmse 0.01415633  max resid 0.02204767 
## Run 318 stress 0.002338111 
## Run 319 stress 0.00233813 
## Run 320 stress 0.002338122 
## Run 321 stress 0.002338117 
## Run 322 stress 0.002338123 
## Run 323 stress 0.2982844 
## Run 324 stress 0.002338117 
## Run 325 stress 9.410152e-05 
## ... Procrustes: rmse 0.01179763  max resid 0.03250593 
## Run 326 stress 9.545537e-05 
## ... Procrustes: rmse 0.02433158  max resid 0.04418781 
## Run 327 stress 0.002338115 
## Run 328 stress 0.002338117 
## Run 329 stress 9.986495e-05 
## ... Procrustes: rmse 0.01926315  max resid 0.0273837 
## Run 330 stress 0.253916 
## Run 331 stress 0.002338119 
## Run 332 stress 0.000100691 
## ... Procrustes: rmse 0.02119664  max resid 0.039105 
## Run 333 stress 0.1773328 
## Run 334 stress 0.002338103 
## Run 335 stress 9.919127e-05 
## ... Procrustes: rmse 0.01046122  max resid 0.02171447 
## Run 336 stress 0.0001036205 
## ... Procrustes: rmse 0.02112438  max resid 0.0389851 
## Run 337 stress 9.831859e-05 
## ... Procrustes: rmse 0.01067753  max resid 0.02881481 
## Run 338 stress 9.748678e-05 
## ... Procrustes: rmse 0.007188887  max resid 0.01866202 
## Run 339 stress 0.002338112 
## Run 340 stress 9.976021e-05 
## ... Procrustes: rmse 0.01410387  max resid 0.0218492 
## Run 341 stress 9.898045e-05 
## ... Procrustes: rmse 0.01081831  max resid 0.02939528 
## Run 342 stress 0.000151962 
## ... Procrustes: rmse 0.01445689  max resid 0.02389265 
## Run 343 stress 0.002338114 
## Run 344 stress 0.002338108 
## Run 345 stress 9.852214e-05 
## ... Procrustes: rmse 0.02238979  max resid 0.03481907 
## Run 346 stress 0.0001743045 
## ... Procrustes: rmse 0.01638483  max resid 0.03052521 
## Run 347 stress 0.00233812 
## Run 348 stress 0.002338122 
## Run 349 stress 9.522625e-05 
## ... Procrustes: rmse 0.002887581  max resid 0.003796033 
## ... Similar to previous best
## Run 350 stress 9.885792e-05 
## ... Procrustes: rmse 0.006812221  max resid 0.01774555 
## Run 351 stress 9.278037e-05 
## ... Procrustes: rmse 0.009909516  max resid 0.02485188 
## Run 352 stress 9.738766e-05 
## ... Procrustes: rmse 0.01063412  max resid 0.027377 
## Run 353 stress 0.2360866 
## Run 354 stress 0.002338121 
## Run 355 stress 9.636343e-05 
## ... Procrustes: rmse 0.01036068  max resid 0.02707203 
## Run 356 stress 0.000176242 
## ... Procrustes: rmse 0.0177934  max resid 0.03323325 
## Run 357 stress 0.002338106 
## Run 358 stress 0.002338105 
## Run 359 stress 0.002338116 
## Run 360 stress 9.294198e-05 
## ... Procrustes: rmse 0.008724004  max resid 0.02420189 
## Run 361 stress 9.958897e-05 
## ... Procrustes: rmse 0.01344429  max resid 0.02233939 
## Run 362 stress 9.95307e-05 
## ... Procrustes: rmse 0.01087125  max resid 0.02958028 
## Run 363 stress 9.68799e-05 
## ... Procrustes: rmse 0.02325866  max resid 0.03673931 
## Run 364 stress 0.002338117 
## Run 365 stress 9.62324e-05 
## ... Procrustes: rmse 0.00210995  max resid 0.003886881 
## ... Similar to previous best
## Run 366 stress 0.1773328 
## Run 367 stress 0.002338111 
## Run 368 stress 0.0001778839 
## ... Procrustes: rmse 0.01715623  max resid 0.03177595 
## Run 369 stress 9.684639e-05 
## ... Procrustes: rmse 0.01175825  max resid 0.03248972 
## Run 370 stress 0.002338122 
## Run 371 stress 0.002338116 
## Run 372 stress 0.1773328 
## Run 373 stress 9.991451e-05 
## ... Procrustes: rmse 0.02115413  max resid 0.03900317 
## Run 374 stress 0.000107002 
## ... Procrustes: rmse 0.02111394  max resid 0.03901717 
## Run 375 stress 0.1773328 
## Run 376 stress 0.0001374224 
## ... Procrustes: rmse 0.01519489  max resid 0.02829938 
## Run 377 stress 8.249009e-05 
## ... Procrustes: rmse 0.01065372  max resid 0.02876869 
## Run 378 stress 0.002338104 
## Run 379 stress 9.117848e-05 
## ... Procrustes: rmse 0.004293614  max resid 0.01141633 
## Run 380 stress 9.802265e-05 
## ... Procrustes: rmse 0.01045768  max resid 0.0281966 
## Run 381 stress 0.1773328 
## Run 382 stress 0.002338121 
## Run 383 stress 9.794588e-05 
## ... Procrustes: rmse 0.01118654  max resid 0.03068895 
## Run 384 stress 0.002338117 
## Run 385 stress 9.609959e-05 
## ... Procrustes: rmse 0.01076475  max resid 0.02945701 
## Run 386 stress 0.2787143 
## Run 387 stress 9.609102e-05 
## ... Procrustes: rmse 0.0112703  max resid 0.02729118 
## Run 388 stress 0.002338123 
## Run 389 stress 0.002338104 
## Run 390 stress 0.2058255 
## Run 391 stress 0.0001035151 
## ... Procrustes: rmse 0.02117209  max resid 0.03906601 
## Run 392 stress 0.002338116 
## Run 393 stress 0.002338122 
## Run 394 stress 0.0001116052 
## ... Procrustes: rmse 0.01697609  max resid 0.02730443 
## Run 395 stress 0.002338122 
## Run 396 stress 0.002338122 
## Run 397 stress 0.0001375098 
## ... Procrustes: rmse 0.01623468  max resid 0.03384282 
## Run 398 stress 9.436803e-05 
## ... Procrustes: rmse 0.009612769  max resid 0.0202616 
## Run 399 stress 9.99425e-05 
## ... Procrustes: rmse 0.02133451  max resid 0.03614669 
## Run 400 stress 0.0001058046 
## ... Procrustes: rmse 0.02113662  max resid 0.03900537 
## Run 401 stress 0.1773328 
## Run 402 stress 0.002338115 
## Run 403 stress 9.786717e-05 
## ... Procrustes: rmse 0.02639345  max resid 0.04498128 
## Run 404 stress 0.0001002935 
## ... Procrustes: rmse 0.02120422  max resid 0.03908557 
## Run 405 stress 9.630921e-05 
## ... Procrustes: rmse 0.007618462  max resid 0.01882647 
## Run 406 stress 0.002338118 
## Run 407 stress 7.886156e-05 
## ... Procrustes: rmse 0.003006332  max resid 0.006909696 
## ... Similar to previous best
## Run 408 stress 0.0001115282 
## ... Procrustes: rmse 0.02114997  max resid 0.03911611 
## Run 409 stress 0.002338113 
## Run 410 stress 0.002338113 
## Run 411 stress 8.987223e-05 
## ... Procrustes: rmse 0.005600371  max resid 0.008982186 
## Run 412 stress 0.002338124 
## Run 413 stress 0.0001175368 
## ... Procrustes: rmse 0.01804039  max resid 0.02938282 
## Run 414 stress 9.964345e-05 
## ... Procrustes: rmse 0.0111608  max resid 0.01665359 
## Run 415 stress 0.002338121 
## Run 416 stress 9.737478e-05 
## ... Procrustes: rmse 0.01076137  max resid 0.02916102 
## Run 417 stress 0.2538984 
## Run 418 stress 9.876531e-05 
## ... Procrustes: rmse 0.01144583  max resid 0.03155811 
## Run 419 stress 0.002338103 
## Run 420 stress 9.960556e-05 
## ... Procrustes: rmse 0.02317502  max resid 0.03651845 
## Run 421 stress 0.002338123 
## Run 422 stress 0.0001049921 
## ... Procrustes: rmse 0.02112886  max resid 0.03900741 
## Run 423 stress 0.0001709442 
## ... Procrustes: rmse 0.01774279  max resid 0.03312231 
## Run 424 stress 9.864772e-05 
## ... Procrustes: rmse 0.02077813  max resid 0.03028218 
## Run 425 stress 0.0001635476 
## ... Procrustes: rmse 0.01512339  max resid 0.0219317 
## Run 426 stress 0.002338118 
## Run 427 stress 0.002338116 
## Run 428 stress 0.002338117 
## Run 429 stress 9.136984e-05 
## ... Procrustes: rmse 0.01074001  max resid 0.02901492 
## Run 430 stress 9.857266e-05 
## ... Procrustes: rmse 0.01081457  max resid 0.02917904 
## Run 431 stress 0.3266727 
## Run 432 stress 0.002338112 
## Run 433 stress 7.311494e-05 
## ... New best solution
## ... Procrustes: rmse 0.006612863  max resid 0.01742666 
## Run 434 stress 0.1773328 
## Run 435 stress 0.002338119 
## Run 436 stress 0.0001064995 
## ... Procrustes: rmse 0.0159535  max resid 0.0295825 
## Run 437 stress 9.996728e-05 
## ... Procrustes: rmse 0.01615375  max resid 0.03013765 
## Run 438 stress 0.002338111 
## Run 439 stress 0.000155277 
## ... Procrustes: rmse 0.01347453  max resid 0.02271081 
## Run 440 stress 9.952671e-05 
## ... Procrustes: rmse 0.01615542  max resid 0.03014173 
## Run 441 stress 0.002338119 
## Run 442 stress 9.991683e-05 
## ... Procrustes: rmse 0.004626312  max resid 0.007583695 
## ... Similar to previous best
## Run 443 stress 0.002338118 
## Run 444 stress 0.00233811 
## Run 445 stress 9.140411e-05 
## ... Procrustes: rmse 0.0168358  max resid 0.04552819 
## Run 446 stress 0.002338117 
## Run 447 stress 9.634499e-05 
## ... Procrustes: rmse 0.007487239  max resid 0.01895404 
## Run 448 stress 0.0001004477 
## ... Procrustes: rmse 0.01347273  max resid 0.02358164 
## Run 449 stress 0.002338117 
## Run 450 stress 0.002338121 
## Run 451 stress 0.002338123 
## Run 452 stress 9.973487e-05 
## ... Procrustes: rmse 0.01648987  max resid 0.03091566 
## Run 453 stress 9.893621e-05 
## ... Procrustes: rmse 0.02142265  max resid 0.03296802 
## Run 454 stress 9.813004e-05 
## ... Procrustes: rmse 0.01577603  max resid 0.02369426 
## Run 455 stress 9.025987e-05 
## ... Procrustes: rmse 0.0140973  max resid 0.03676358 
## Run 456 stress 0.00233811 
## Run 457 stress 0.0001055586 
## ... Procrustes: rmse 0.01612383  max resid 0.02998564 
## Run 458 stress 9.523066e-05 
## ... Procrustes: rmse 0.01327597  max resid 0.03518665 
## Run 459 stress 9.990234e-05 
## ... Procrustes: rmse 0.01615087  max resid 0.03011355 
## Run 460 stress 0.002338121 
## Run 461 stress 0.002338111 
## Run 462 stress 0.002338106 
## Run 463 stress 0.002338116 
## Run 464 stress 0.002338114 
## Run 465 stress 9.989326e-05 
## ... Procrustes: rmse 0.01408172  max resid 0.02374257 
## Run 466 stress 9.837285e-05 
## ... Procrustes: rmse 0.0169958  max resid 0.04593227 
## Run 467 stress 0.002338119 
## Run 468 stress 0.0001182721 
## ... Procrustes: rmse 0.01546825  max resid 0.02827837 
## Run 469 stress 0.002338107 
## Run 470 stress 0.002338113 
## Run 471 stress 9.170577e-05 
## ... Procrustes: rmse 0.01716116  max resid 0.04654173 
## Run 472 stress 9.96087e-05 
## ... Procrustes: rmse 0.01607794  max resid 0.0299574 
## Run 473 stress 9.986214e-05 
## ... Procrustes: rmse 0.01364376  max resid 0.01926442 
## Run 474 stress 0.0001762009 
## ... Procrustes: rmse 0.01267389  max resid 0.02022236 
## Run 475 stress 0.002338116 
## Run 476 stress 9.982273e-05 
## ... Procrustes: rmse 0.01705033  max resid 0.04617528 
## Run 477 stress 9.914406e-05 
## ... Procrustes: rmse 0.009144152  max resid 0.0222917 
## Run 478 stress 9.965069e-05 
## ... Procrustes: rmse 0.01320934  max resid 0.01920456 
## Run 479 stress 9.785284e-05 
## ... Procrustes: rmse 0.01340654  max resid 0.03593189 
## Run 480 stress 0.0001737786 
## ... Procrustes: rmse 0.01363395  max resid 0.0227839 
## Run 481 stress 0.002338122 
## Run 482 stress 0.2367628 
## Run 483 stress 0.002338127 
## Run 484 stress 0.002338116 
## Run 485 stress 9.992138e-05 
## ... Procrustes: rmse 0.01713724  max resid 0.04644291 
## Run 486 stress 0.002338109 
## Run 487 stress 0.0001030629 
## ... Procrustes: rmse 0.01315672  max resid 0.0218449 
## Run 488 stress 9.821304e-05 
## ... Procrustes: rmse 0.01715695  max resid 0.04647207 
## Run 489 stress 9.733651e-05 
## ... Procrustes: rmse 0.01324379  max resid 0.03714243 
## Run 490 stress 9.547918e-05 
## ... Procrustes: rmse 0.01723081  max resid 0.04681024 
## Run 491 stress 0.0001065198 
## ... Procrustes: rmse 0.01348346  max resid 0.02450384 
## Run 492 stress 0.002338113 
## Run 493 stress 9.366377e-05 
## ... Procrustes: rmse 0.01724064  max resid 0.04630822 
## Run 494 stress 0.002338121 
## Run 495 stress 9.757411e-05 
## ... Procrustes: rmse 0.0189495  max resid 0.02634305 
## Run 496 stress 0.2559268 
## Run 497 stress 0.002338119 
## Run 498 stress 9.968193e-05 
## ... Procrustes: rmse 0.01657552  max resid 0.0310892 
## Run 499 stress 0.0001167562 
## ... Procrustes: rmse 0.01535597  max resid 0.02804786 
## Run 500 stress 0.1773328 
## *** Best solution repeated 1 times
## Warning in metaMDS(enveom_dist, try = 1000, parallel = 4, previous.best, :
## stress is (nearly) zero: you may have insufficient data
# Stratified lakes and ocean sites
enveso_NMDS <- metaMDS(enveso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.02169059 
## Run 1 stress 0.06608976 
## Run 2 stress 0.02169059 
## ... New best solution
## ... Procrustes: rmse 1.304675e-05  max resid 3.448037e-05 
## ... Similar to previous best
## Run 3 stress 0.06608976 
## Run 4 stress 0.02169059 
## ... Procrustes: rmse 1.006751e-05  max resid 2.730254e-05 
## ... Similar to previous best
## Run 5 stress 0.02169059 
## ... New best solution
## ... Procrustes: rmse 2.352025e-06  max resid 4.030026e-06 
## ... Similar to previous best
## Run 6 stress 0.1244007 
## Run 7 stress 0.02169059 
## ... Procrustes: rmse 6.819927e-06  max resid 1.711835e-05 
## ... Similar to previous best
## Run 8 stress 0.02169059 
## ... Procrustes: rmse 1.304913e-05  max resid 2.913728e-05 
## ... Similar to previous best
## Run 9 stress 0.02169059 
## ... Procrustes: rmse 6.671688e-06  max resid 1.692243e-05 
## ... Similar to previous best
## Run 10 stress 0.02169059 
## ... Procrustes: rmse 1.838201e-05  max resid 4.946394e-05 
## ... Similar to previous best
## Run 11 stress 0.06608976 
## Run 12 stress 0.02169059 
## ... Procrustes: rmse 2.803597e-06  max resid 5.646574e-06 
## ... Similar to previous best
## Run 13 stress 0.06608976 
## Run 14 stress 0.02169059 
## ... Procrustes: rmse 1.711876e-05  max resid 4.201689e-05 
## ... Similar to previous best
## Run 15 stress 0.02169059 
## ... Procrustes: rmse 4.08139e-06  max resid 9.302233e-06 
## ... Similar to previous best
## Run 16 stress 0.02169059 
## ... Procrustes: rmse 9.249879e-06  max resid 2.338774e-05 
## ... Similar to previous best
## Run 17 stress 0.0216906 
## ... Procrustes: rmse 2.806213e-05  max resid 7.224447e-05 
## ... Similar to previous best
## Run 18 stress 0.02169059 
## ... Procrustes: rmse 7.729109e-06  max resid 1.588099e-05 
## ... Similar to previous best
## Run 19 stress 0.02169059 
## ... Procrustes: rmse 1.358998e-05  max resid 3.258584e-05 
## ... Similar to previous best
## Run 20 stress 0.02169059 
## ... Procrustes: rmse 2.651739e-05  max resid 6.787979e-05 
## ... Similar to previous best
## Run 21 stress 0.02169059 
## ... Procrustes: rmse 5.317967e-06  max resid 1.340579e-05 
## ... Similar to previous best
## Run 22 stress 0.02169059 
## ... Procrustes: rmse 1.716848e-05  max resid 4.333551e-05 
## ... Similar to previous best
## Run 23 stress 0.02169059 
## ... Procrustes: rmse 1.08404e-05  max resid 2.781119e-05 
## ... Similar to previous best
## Run 24 stress 0.02169059 
## ... Procrustes: rmse 6.481871e-06  max resid 1.188277e-05 
## ... Similar to previous best
## Run 25 stress 0.02169059 
## ... Procrustes: rmse 1.218743e-05  max resid 3.088381e-05 
## ... Similar to previous best
## Run 26 stress 0.02169059 
## ... Procrustes: rmse 1.294467e-05  max resid 3.41397e-05 
## ... Similar to previous best
## Run 27 stress 0.02169059 
## ... Procrustes: rmse 6.196377e-06  max resid 1.41163e-05 
## ... Similar to previous best
## Run 28 stress 0.06608976 
## Run 29 stress 0.3154694 
## Run 30 stress 0.02169059 
## ... Procrustes: rmse 5.126053e-06  max resid 1.089719e-05 
## ... Similar to previous best
## Run 31 stress 0.06608976 
## Run 32 stress 0.02169059 
## ... Procrustes: rmse 1.841401e-05  max resid 4.659743e-05 
## ... Similar to previous best
## Run 33 stress 0.02169059 
## ... Procrustes: rmse 3.745038e-06  max resid 8.304667e-06 
## ... Similar to previous best
## Run 34 stress 0.02169059 
## ... Procrustes: rmse 9.457847e-06  max resid 2.383298e-05 
## ... Similar to previous best
## Run 35 stress 0.02169059 
## ... Procrustes: rmse 6.082616e-06  max resid 1.574563e-05 
## ... Similar to previous best
## Run 36 stress 0.02169059 
## ... Procrustes: rmse 5.726175e-06  max resid 1.533851e-05 
## ... Similar to previous best
## Run 37 stress 0.02169059 
## ... Procrustes: rmse 4.080997e-06  max resid 7.529233e-06 
## ... Similar to previous best
## Run 38 stress 0.02169059 
## ... Procrustes: rmse 6.214798e-06  max resid 1.55284e-05 
## ... Similar to previous best
## Run 39 stress 0.02169059 
## ... New best solution
## ... Procrustes: rmse 3.086169e-06  max resid 6.094489e-06 
## ... Similar to previous best
## Run 40 stress 0.02169059 
## ... Procrustes: rmse 9.6961e-06  max resid 2.231415e-05 
## ... Similar to previous best
## Run 41 stress 0.02169059 
## ... Procrustes: rmse 1.660102e-05  max resid 4.285888e-05 
## ... Similar to previous best
## Run 42 stress 0.02169059 
## ... Procrustes: rmse 2.676736e-06  max resid 4.897693e-06 
## ... Similar to previous best
## Run 43 stress 0.0216906 
## ... Procrustes: rmse 2.917205e-05  max resid 7.61478e-05 
## ... Similar to previous best
## Run 44 stress 0.02169059 
## ... New best solution
## ... Procrustes: rmse 3.293337e-06  max resid 8.153761e-06 
## ... Similar to previous best
## Run 45 stress 0.02169059 
## ... Procrustes: rmse 1.506076e-06  max resid 3.631667e-06 
## ... Similar to previous best
## Run 46 stress 0.02169059 
## ... Procrustes: rmse 1.326352e-05  max resid 3.292009e-05 
## ... Similar to previous best
## Run 47 stress 0.0216906 
## ... Procrustes: rmse 6.782432e-06  max resid 9.732877e-06 
## ... Similar to previous best
## Run 48 stress 0.02169059 
## ... Procrustes: rmse 6.173601e-06  max resid 1.568101e-05 
## ... Similar to previous best
## Run 49 stress 0.06608976 
## Run 50 stress 0.02169059 
## ... Procrustes: rmse 9.997266e-06  max resid 2.578346e-05 
## ... Similar to previous best
## Run 51 stress 0.06608976 
## Run 52 stress 0.1244548 
## Run 53 stress 0.02169059 
## ... Procrustes: rmse 1.390428e-05  max resid 3.550374e-05 
## ... Similar to previous best
## Run 54 stress 0.02169059 
## ... Procrustes: rmse 1.163064e-05  max resid 1.945916e-05 
## ... Similar to previous best
## Run 55 stress 0.06608976 
## Run 56 stress 0.0216906 
## ... Procrustes: rmse 2.817678e-05  max resid 7.232646e-05 
## ... Similar to previous best
## Run 57 stress 0.02169059 
## ... Procrustes: rmse 1.61406e-06  max resid 3.312737e-06 
## ... Similar to previous best
## Run 58 stress 0.06608976 
## Run 59 stress 0.0216906 
## ... Procrustes: rmse 8.439659e-06  max resid 1.81412e-05 
## ... Similar to previous best
## Run 60 stress 0.02169059 
## ... Procrustes: rmse 2.035247e-05  max resid 5.337019e-05 
## ... Similar to previous best
## Run 61 stress 0.1003186 
## Run 62 stress 0.02169059 
## ... Procrustes: rmse 8.017426e-06  max resid 1.995587e-05 
## ... Similar to previous best
## Run 63 stress 0.02169059 
## ... Procrustes: rmse 8.289434e-06  max resid 2.121259e-05 
## ... Similar to previous best
## Run 64 stress 0.02169059 
## ... Procrustes: rmse 1.122139e-05  max resid 2.907632e-05 
## ... Similar to previous best
## Run 65 stress 0.06608976 
## Run 66 stress 0.02169059 
## ... Procrustes: rmse 4.481742e-06  max resid 1.077124e-05 
## ... Similar to previous best
## Run 67 stress 0.1199826 
## Run 68 stress 0.02169059 
## ... Procrustes: rmse 4.835816e-06  max resid 1.237409e-05 
## ... Similar to previous best
## Run 69 stress 0.2843498 
## Run 70 stress 0.02169059 
## ... Procrustes: rmse 1.403536e-05  max resid 3.671319e-05 
## ... Similar to previous best
## Run 71 stress 0.06608976 
## Run 72 stress 0.0216906 
## ... Procrustes: rmse 2.55948e-05  max resid 6.468461e-05 
## ... Similar to previous best
## Run 73 stress 0.06608976 
## Run 74 stress 0.02169059 
## ... Procrustes: rmse 1.007575e-06  max resid 2.517298e-06 
## ... Similar to previous best
## Run 75 stress 0.06608976 
## Run 76 stress 0.02169059 
## ... Procrustes: rmse 1.211393e-05  max resid 3.06989e-05 
## ... Similar to previous best
## Run 77 stress 0.06608976 
## Run 78 stress 0.02169059 
## ... Procrustes: rmse 6.154924e-06  max resid 1.673471e-05 
## ... Similar to previous best
## Run 79 stress 0.02169059 
## ... Procrustes: rmse 2.471584e-05  max resid 6.152384e-05 
## ... Similar to previous best
## Run 80 stress 0.1208472 
## Run 81 stress 0.02169059 
## ... Procrustes: rmse 5.90686e-06  max resid 1.231074e-05 
## ... Similar to previous best
## Run 82 stress 0.02169059 
## ... Procrustes: rmse 7.632536e-06  max resid 1.869029e-05 
## ... Similar to previous best
## Run 83 stress 0.02169059 
## ... Procrustes: rmse 1.38965e-05  max resid 3.500443e-05 
## ... Similar to previous best
## Run 84 stress 0.06608976 
## Run 85 stress 0.06608976 
## Run 86 stress 0.0216906 
## ... Procrustes: rmse 2.967367e-05  max resid 7.632436e-05 
## ... Similar to previous best
## Run 87 stress 0.2996193 
## Run 88 stress 0.02169059 
## ... Procrustes: rmse 7.103991e-06  max resid 1.815508e-05 
## ... Similar to previous best
## Run 89 stress 0.02169059 
## ... Procrustes: rmse 1.008747e-05  max resid 2.460088e-05 
## ... Similar to previous best
## Run 90 stress 0.02169059 
## ... Procrustes: rmse 1.136441e-05  max resid 2.892512e-05 
## ... Similar to previous best
## Run 91 stress 0.02169059 
## ... Procrustes: rmse 3.804877e-06  max resid 8.383254e-06 
## ... Similar to previous best
## Run 92 stress 0.02169059 
## ... Procrustes: rmse 9.269118e-06  max resid 2.314402e-05 
## ... Similar to previous best
## Run 93 stress 0.06608976 
## Run 94 stress 0.02169059 
## ... Procrustes: rmse 2.275052e-06  max resid 5.259898e-06 
## ... Similar to previous best
## Run 95 stress 0.02169059 
## ... Procrustes: rmse 2.334425e-05  max resid 5.942988e-05 
## ... Similar to previous best
## Run 96 stress 0.06608976 
## Run 97 stress 0.02169059 
## ... Procrustes: rmse 8.254079e-06  max resid 2.098679e-05 
## ... Similar to previous best
## Run 98 stress 0.02169059 
## ... Procrustes: rmse 9.460313e-06  max resid 1.997969e-05 
## ... Similar to previous best
## Run 99 stress 0.1221379 
## Run 100 stress 0.02169059 
## ... Procrustes: rmse 1.618561e-05  max resid 4.115698e-05 
## ... Similar to previous best
## Run 101 stress 0.02169059 
## ... Procrustes: rmse 4.96262e-06  max resid 1.260343e-05 
## ... Similar to previous best
## Run 102 stress 0.02169059 
## ... Procrustes: rmse 1.422959e-05  max resid 3.525683e-05 
## ... Similar to previous best
## Run 103 stress 0.06608976 
## Run 104 stress 0.02169059 
## ... Procrustes: rmse 1.454656e-05  max resid 3.670735e-05 
## ... Similar to previous best
## Run 105 stress 0.1255191 
## Run 106 stress 0.02169059 
## ... Procrustes: rmse 1.538523e-05  max resid 3.913619e-05 
## ... Similar to previous best
## Run 107 stress 0.02169059 
## ... Procrustes: rmse 6.462003e-06  max resid 1.378828e-05 
## ... Similar to previous best
## Run 108 stress 0.02169059 
## ... Procrustes: rmse 1.840494e-05  max resid 4.646101e-05 
## ... Similar to previous best
## Run 109 stress 0.02169059 
## ... Procrustes: rmse 4.192456e-06  max resid 1.093425e-05 
## ... Similar to previous best
## Run 110 stress 0.02169059 
## ... Procrustes: rmse 4.819299e-06  max resid 1.29863e-05 
## ... Similar to previous best
## Run 111 stress 0.06608976 
## Run 112 stress 0.02169059 
## ... Procrustes: rmse 6.365527e-06  max resid 1.515022e-05 
## ... Similar to previous best
## Run 113 stress 0.02169059 
## ... Procrustes: rmse 7.13615e-06  max resid 1.850534e-05 
## ... Similar to previous best
## Run 114 stress 0.1208471 
## Run 115 stress 0.02169059 
## ... Procrustes: rmse 6.960095e-06  max resid 1.262964e-05 
## ... Similar to previous best
## Run 116 stress 0.02169059 
## ... Procrustes: rmse 6.198007e-06  max resid 1.628902e-05 
## ... Similar to previous best
## Run 117 stress 0.06608976 
## Run 118 stress 0.0216906 
## ... Procrustes: rmse 2.953249e-05  max resid 7.342582e-05 
## ... Similar to previous best
## Run 119 stress 0.02169059 
## ... Procrustes: rmse 1.450745e-05  max resid 3.759288e-05 
## ... Similar to previous best
## Run 120 stress 0.06608976 
## Run 121 stress 0.02169059 
## ... Procrustes: rmse 5.242716e-06  max resid 1.355054e-05 
## ... Similar to previous best
## Run 122 stress 0.06608976 
## Run 123 stress 0.02169059 
## ... Procrustes: rmse 1.699558e-06  max resid 3.414505e-06 
## ... Similar to previous best
## Run 124 stress 0.02169059 
## ... Procrustes: rmse 9.179017e-06  max resid 2.372854e-05 
## ... Similar to previous best
## Run 125 stress 0.02169059 
## ... Procrustes: rmse 2.280117e-06  max resid 6.040051e-06 
## ... Similar to previous best
## Run 126 stress 0.02169059 
## ... Procrustes: rmse 8.723027e-06  max resid 2.230889e-05 
## ... Similar to previous best
## Run 127 stress 0.1199826 
## Run 128 stress 0.2986719 
## Run 129 stress 0.02169059 
## ... Procrustes: rmse 3.378366e-06  max resid 6.968546e-06 
## ... Similar to previous best
## Run 130 stress 0.02169059 
## ... Procrustes: rmse 1.484062e-05  max resid 3.695112e-05 
## ... Similar to previous best
## Run 131 stress 0.1199826 
## Run 132 stress 0.02169059 
## ... Procrustes: rmse 1.59607e-05  max resid 4.093776e-05 
## ... Similar to previous best
## Run 133 stress 0.06608976 
## Run 134 stress 0.02169059 
## ... New best solution
## ... Procrustes: rmse 1.890628e-06  max resid 4.671243e-06 
## ... Similar to previous best
## Run 135 stress 0.02169059 
## ... Procrustes: rmse 4.576695e-06  max resid 8.401289e-06 
## ... Similar to previous best
## Run 136 stress 0.02169059 
## ... Procrustes: rmse 2.11929e-05  max resid 5.381317e-05 
## ... Similar to previous best
## Run 137 stress 0.02169059 
## ... Procrustes: rmse 1.344026e-05  max resid 3.307178e-05 
## ... Similar to previous best
## Run 138 stress 0.02169059 
## ... Procrustes: rmse 4.084898e-06  max resid 1.059179e-05 
## ... Similar to previous best
## Run 139 stress 0.02169059 
## ... Procrustes: rmse 2.159405e-05  max resid 5.392279e-05 
## ... Similar to previous best
## Run 140 stress 0.02169059 
## ... Procrustes: rmse 4.169826e-06  max resid 1.113965e-05 
## ... Similar to previous best
## Run 141 stress 0.02169059 
## ... Procrustes: rmse 1.651972e-05  max resid 3.52909e-05 
## ... Similar to previous best
## Run 142 stress 0.0216906 
## ... Procrustes: rmse 3.421567e-05  max resid 8.836475e-05 
## ... Similar to previous best
## Run 143 stress 0.02169059 
## ... Procrustes: rmse 5.720855e-06  max resid 1.379585e-05 
## ... Similar to previous best
## Run 144 stress 0.02169059 
## ... Procrustes: rmse 3.45331e-06  max resid 9.40312e-06 
## ... Similar to previous best
## Run 145 stress 0.06608976 
## Run 146 stress 0.02169059 
## ... Procrustes: rmse 5.817381e-06  max resid 1.429628e-05 
## ... Similar to previous best
## Run 147 stress 0.02169059 
## ... Procrustes: rmse 5.572145e-06  max resid 1.112975e-05 
## ... Similar to previous best
## Run 148 stress 0.02169059 
## ... Procrustes: rmse 1.488571e-06  max resid 3.75208e-06 
## ... Similar to previous best
## Run 149 stress 0.1223427 
## Run 150 stress 0.02169059 
## ... Procrustes: rmse 1.647113e-06  max resid 3.127537e-06 
## ... Similar to previous best
## Run 151 stress 0.02169059 
## ... Procrustes: rmse 9.442028e-06  max resid 2.413995e-05 
## ... Similar to previous best
## Run 152 stress 0.02169059 
## ... Procrustes: rmse 1.149049e-05  max resid 2.955647e-05 
## ... Similar to previous best
## Run 153 stress 0.1208472 
## Run 154 stress 0.02169059 
## ... Procrustes: rmse 2.910883e-06  max resid 5.707287e-06 
## ... Similar to previous best
## Run 155 stress 0.02169059 
## ... Procrustes: rmse 1.24915e-05  max resid 3.172823e-05 
## ... Similar to previous best
## Run 156 stress 0.02169059 
## ... Procrustes: rmse 7.167435e-06  max resid 1.684667e-05 
## ... Similar to previous best
## Run 157 stress 0.02169059 
## ... Procrustes: rmse 2.717364e-05  max resid 6.998615e-05 
## ... Similar to previous best
## Run 158 stress 0.02169059 
## ... Procrustes: rmse 2.698041e-05  max resid 7.018511e-05 
## ... Similar to previous best
## Run 159 stress 0.02169059 
## ... Procrustes: rmse 2.378748e-05  max resid 5.939268e-05 
## ... Similar to previous best
## Run 160 stress 0.02169059 
## ... Procrustes: rmse 9.59567e-06  max resid 2.412648e-05 
## ... Similar to previous best
## Run 161 stress 0.02169059 
## ... New best solution
## ... Procrustes: rmse 1.02398e-06  max resid 2.445186e-06 
## ... Similar to previous best
## Run 162 stress 0.02169059 
## ... Procrustes: rmse 4.213851e-06  max resid 9.500193e-06 
## ... Similar to previous best
## Run 163 stress 0.02169059 
## ... Procrustes: rmse 7.933719e-06  max resid 1.456051e-05 
## ... Similar to previous best
## Run 164 stress 0.1208471 
## Run 165 stress 0.06608976 
## Run 166 stress 0.1221367 
## Run 167 stress 0.02169059 
## ... Procrustes: rmse 2.066325e-05  max resid 5.091091e-05 
## ... Similar to previous best
## Run 168 stress 0.1221363 
## Run 169 stress 0.02169059 
## ... Procrustes: rmse 4.39562e-06  max resid 9.704509e-06 
## ... Similar to previous best
## Run 170 stress 0.02169059 
## ... Procrustes: rmse 8.797823e-06  max resid 2.310057e-05 
## ... Similar to previous best
## Run 171 stress 0.02169059 
## ... Procrustes: rmse 1.015676e-05  max resid 2.579982e-05 
## ... Similar to previous best
## Run 172 stress 0.02169059 
## ... Procrustes: rmse 1.759936e-05  max resid 4.489615e-05 
## ... Similar to previous best
## Run 173 stress 0.02169059 
## ... Procrustes: rmse 3.344292e-06  max resid 7.516269e-06 
## ... Similar to previous best
## Run 174 stress 0.1199826 
## Run 175 stress 0.02169059 
## ... Procrustes: rmse 1.596295e-05  max resid 3.911485e-05 
## ... Similar to previous best
## Run 176 stress 0.3154675 
## Run 177 stress 0.02169059 
## ... Procrustes: rmse 5.273471e-06  max resid 1.249135e-05 
## ... Similar to previous best
## Run 178 stress 0.02169059 
## ... Procrustes: rmse 2.58568e-06  max resid 4.313734e-06 
## ... Similar to previous best
## Run 179 stress 0.06608976 
## Run 180 stress 0.02169059 
## ... Procrustes: rmse 4.867349e-06  max resid 1.205698e-05 
## ... Similar to previous best
## Run 181 stress 0.02169059 
## ... Procrustes: rmse 6.685986e-06  max resid 1.668e-05 
## ... Similar to previous best
## Run 182 stress 0.02169059 
## ... Procrustes: rmse 9.63199e-06  max resid 1.994415e-05 
## ... Similar to previous best
## Run 183 stress 0.02169059 
## ... Procrustes: rmse 1.097456e-06  max resid 2.306726e-06 
## ... Similar to previous best
## Run 184 stress 0.06608977 
## Run 185 stress 0.02169059 
## ... Procrustes: rmse 1.430892e-05  max resid 3.5959e-05 
## ... Similar to previous best
## Run 186 stress 0.06608976 
## Run 187 stress 0.02169059 
## ... Procrustes: rmse 3.777635e-06  max resid 7.503621e-06 
## ... Similar to previous best
## Run 188 stress 0.02169059 
## ... Procrustes: rmse 1.995219e-05  max resid 5.000429e-05 
## ... Similar to previous best
## Run 189 stress 0.02169059 
## ... Procrustes: rmse 5.197288e-06  max resid 1.306749e-05 
## ... Similar to previous best
## Run 190 stress 0.06608976 
## Run 191 stress 0.02169059 
## ... Procrustes: rmse 9.946954e-06  max resid 2.548141e-05 
## ... Similar to previous best
## Run 192 stress 0.02169059 
## ... Procrustes: rmse 2.612205e-06  max resid 3.643831e-06 
## ... Similar to previous best
## Run 193 stress 0.02169059 
## ... Procrustes: rmse 6.499632e-06  max resid 1.536907e-05 
## ... Similar to previous best
## Run 194 stress 0.02169059 
## ... Procrustes: rmse 4.494233e-06  max resid 1.196983e-05 
## ... Similar to previous best
## Run 195 stress 0.02169059 
## ... Procrustes: rmse 1.755253e-05  max resid 4.352231e-05 
## ... Similar to previous best
## Run 196 stress 0.0216906 
## ... Procrustes: rmse 3.075222e-05  max resid 7.666938e-05 
## ... Similar to previous best
## Run 197 stress 0.1199826 
## Run 198 stress 0.06608976 
## Run 199 stress 0.1003185 
## Run 200 stress 0.02169059 
## ... Procrustes: rmse 8.491593e-06  max resid 2.150938e-05 
## ... Similar to previous best
## Run 201 stress 0.02169059 
## ... Procrustes: rmse 7.090962e-06  max resid 1.849017e-05 
## ... Similar to previous best
## Run 202 stress 0.02169059 
## ... Procrustes: rmse 3.613862e-06  max resid 9.54897e-06 
## ... Similar to previous best
## Run 203 stress 0.06608976 
## Run 204 stress 0.06608976 
## Run 205 stress 0.06608976 
## Run 206 stress 0.02169059 
## ... Procrustes: rmse 9.034007e-06  max resid 2.350173e-05 
## ... Similar to previous best
## Run 207 stress 0.02169059 
## ... Procrustes: rmse 9.117112e-06  max resid 2.380184e-05 
## ... Similar to previous best
## Run 208 stress 0.02169059 
## ... Procrustes: rmse 2.855582e-06  max resid 6.878092e-06 
## ... Similar to previous best
## Run 209 stress 0.0216906 
## ... Procrustes: rmse 2.773658e-05  max resid 7.125214e-05 
## ... Similar to previous best
## Run 210 stress 0.02169059 
## ... Procrustes: rmse 1.660425e-05  max resid 4.337472e-05 
## ... Similar to previous best
## Run 211 stress 0.06608976 
## Run 212 stress 0.02169059 
## ... Procrustes: rmse 3.471308e-06  max resid 8.690009e-06 
## ... Similar to previous best
## Run 213 stress 0.02169059 
## ... Procrustes: rmse 2.360715e-06  max resid 6.096618e-06 
## ... Similar to previous best
## Run 214 stress 0.06608976 
## Run 215 stress 0.02169059 
## ... Procrustes: rmse 1.615129e-06  max resid 2.853111e-06 
## ... Similar to previous best
## Run 216 stress 0.02169059 
## ... Procrustes: rmse 5.15175e-06  max resid 1.177496e-05 
## ... Similar to previous best
## Run 217 stress 0.02169059 
## ... Procrustes: rmse 1.479088e-05  max resid 3.813158e-05 
## ... Similar to previous best
## Run 218 stress 0.02169059 
## ... Procrustes: rmse 1.719713e-05  max resid 4.526449e-05 
## ... Similar to previous best
## Run 219 stress 0.06608976 
## Run 220 stress 0.02169059 
## ... Procrustes: rmse 6.946407e-06  max resid 1.813651e-05 
## ... Similar to previous best
## Run 221 stress 0.02169059 
## ... Procrustes: rmse 4.544172e-06  max resid 9.331867e-06 
## ... Similar to previous best
## Run 222 stress 0.0216906 
## ... Procrustes: rmse 3.241741e-05  max resid 8.329988e-05 
## ... Similar to previous best
## Run 223 stress 0.02169059 
## ... Procrustes: rmse 6.637492e-06  max resid 1.743707e-05 
## ... Similar to previous best
## Run 224 stress 0.02169059 
## ... Procrustes: rmse 1.790914e-05  max resid 4.348986e-05 
## ... Similar to previous best
## Run 225 stress 0.02169059 
## ... Procrustes: rmse 5.168276e-06  max resid 1.152131e-05 
## ... Similar to previous best
## Run 226 stress 0.02169059 
## ... Procrustes: rmse 6.337859e-06  max resid 1.127083e-05 
## ... Similar to previous best
## Run 227 stress 0.0216906 
## ... Procrustes: rmse 3.106706e-05  max resid 7.927495e-05 
## ... Similar to previous best
## Run 228 stress 0.1221375 
## Run 229 stress 0.02169059 
## ... Procrustes: rmse 4.159625e-06  max resid 7.585076e-06 
## ... Similar to previous best
## Run 230 stress 0.0216906 
## ... Procrustes: rmse 2.438558e-05  max resid 6.057926e-05 
## ... Similar to previous best
## Run 231 stress 0.2823062 
## Run 232 stress 0.02169059 
## ... Procrustes: rmse 8.404514e-06  max resid 1.988163e-05 
## ... Similar to previous best
## Run 233 stress 0.02169059 
## ... Procrustes: rmse 1.931394e-05  max resid 4.985019e-05 
## ... Similar to previous best
## Run 234 stress 0.02169059 
## ... Procrustes: rmse 2.738904e-06  max resid 6.680733e-06 
## ... Similar to previous best
## Run 235 stress 0.02169059 
## ... Procrustes: rmse 1.760389e-05  max resid 4.381361e-05 
## ... Similar to previous best
## Run 236 stress 0.02169059 
## ... Procrustes: rmse 3.950975e-06  max resid 7.29562e-06 
## ... Similar to previous best
## Run 237 stress 0.312224 
## Run 238 stress 0.0216906 
## ... Procrustes: rmse 2.60753e-05  max resid 6.452123e-05 
## ... Similar to previous best
## Run 239 stress 0.02169059 
## ... Procrustes: rmse 1.860086e-05  max resid 5.042004e-05 
## ... Similar to previous best
## Run 240 stress 0.02169059 
## ... Procrustes: rmse 2.163095e-05  max resid 5.607181e-05 
## ... Similar to previous best
## Run 241 stress 0.1208472 
## Run 242 stress 0.02169059 
## ... Procrustes: rmse 5.506179e-06  max resid 1.111274e-05 
## ... Similar to previous best
## Run 243 stress 0.02169059 
## ... Procrustes: rmse 6.141488e-06  max resid 1.37088e-05 
## ... Similar to previous best
## Run 244 stress 0.02169059 
## ... Procrustes: rmse 8.317374e-06  max resid 2.07451e-05 
## ... Similar to previous best
## Run 245 stress 0.1199826 
## Run 246 stress 0.02169059 
## ... Procrustes: rmse 7.60632e-06  max resid 1.928061e-05 
## ... Similar to previous best
## Run 247 stress 0.02169059 
## ... Procrustes: rmse 5.834838e-06  max resid 1.356386e-05 
## ... Similar to previous best
## Run 248 stress 0.02169059 
## ... Procrustes: rmse 1.317294e-05  max resid 3.195895e-05 
## ... Similar to previous best
## Run 249 stress 0.02169059 
## ... Procrustes: rmse 7.885917e-06  max resid 1.914748e-05 
## ... Similar to previous best
## Run 250 stress 0.02169059 
## ... Procrustes: rmse 5.33405e-06  max resid 1.000472e-05 
## ... Similar to previous best
## Run 251 stress 0.06608976 
## Run 252 stress 0.125519 
## Run 253 stress 0.06608976 
## Run 254 stress 0.02169059 
## ... Procrustes: rmse 6.356603e-06  max resid 1.082579e-05 
## ... Similar to previous best
## Run 255 stress 0.02169059 
## ... Procrustes: rmse 3.418155e-06  max resid 5.140126e-06 
## ... Similar to previous best
## Run 256 stress 0.0216906 
## ... Procrustes: rmse 3.505889e-05  max resid 8.760894e-05 
## ... Similar to previous best
## Run 257 stress 0.02169059 
## ... Procrustes: rmse 7.344193e-06  max resid 1.767252e-05 
## ... Similar to previous best
## Run 258 stress 0.02169059 
## ... Procrustes: rmse 5.722506e-06  max resid 1.019604e-05 
## ... Similar to previous best
## Run 259 stress 0.02169059 
## ... Procrustes: rmse 1.876315e-06  max resid 4.987413e-06 
## ... Similar to previous best
## Run 260 stress 0.06608976 
## Run 261 stress 0.02169059 
## ... Procrustes: rmse 8.04779e-06  max resid 2.046464e-05 
## ... Similar to previous best
## Run 262 stress 0.06608976 
## Run 263 stress 0.06608976 
## Run 264 stress 0.02169059 
## ... Procrustes: rmse 4.723788e-06  max resid 8.612506e-06 
## ... Similar to previous best
## Run 265 stress 0.02169059 
## ... Procrustes: rmse 3.549711e-06  max resid 9.32194e-06 
## ... Similar to previous best
## Run 266 stress 0.02169059 
## ... Procrustes: rmse 4.219498e-06  max resid 1.123524e-05 
## ... Similar to previous best
## Run 267 stress 0.06608976 
## Run 268 stress 0.02169059 
## ... Procrustes: rmse 6.470568e-06  max resid 9.215529e-06 
## ... Similar to previous best
## Run 269 stress 0.02169059 
## ... Procrustes: rmse 7.576925e-06  max resid 1.431971e-05 
## ... Similar to previous best
## Run 270 stress 0.02169059 
## ... Procrustes: rmse 2.035632e-05  max resid 5.243362e-05 
## ... Similar to previous best
## Run 271 stress 0.02169059 
## ... Procrustes: rmse 2.884184e-06  max resid 5.814028e-06 
## ... Similar to previous best
## Run 272 stress 0.0216906 
## ... Procrustes: rmse 2.701547e-05  max resid 6.896195e-05 
## ... Similar to previous best
## Run 273 stress 0.02169059 
## ... Procrustes: rmse 1.670036e-05  max resid 4.25909e-05 
## ... Similar to previous best
## Run 274 stress 0.1199826 
## Run 275 stress 0.06608976 
## Run 276 stress 0.06608976 
## Run 277 stress 0.02169059 
## ... Procrustes: rmse 9.025911e-06  max resid 2.237477e-05 
## ... Similar to previous best
## Run 278 stress 0.06608976 
## Run 279 stress 0.02169059 
## ... Procrustes: rmse 2.799624e-06  max resid 5.897658e-06 
## ... Similar to previous best
## Run 280 stress 0.02169059 
## ... Procrustes: rmse 5.269415e-06  max resid 1.247237e-05 
## ... Similar to previous best
## Run 281 stress 0.3407335 
## Run 282 stress 0.0216906 
## ... Procrustes: rmse 2.891837e-05  max resid 7.342737e-05 
## ... Similar to previous best
## Run 283 stress 0.02169059 
## ... Procrustes: rmse 1.29169e-05  max resid 3.372886e-05 
## ... Similar to previous best
## Run 284 stress 0.02169059 
## ... Procrustes: rmse 4.668902e-06  max resid 1.117227e-05 
## ... Similar to previous best
## Run 285 stress 0.02169059 
## ... Procrustes: rmse 2.356363e-06  max resid 5.081543e-06 
## ... Similar to previous best
## Run 286 stress 0.02169059 
## ... Procrustes: rmse 1.119897e-05  max resid 2.988498e-05 
## ... Similar to previous best
## Run 287 stress 0.0216906 
## ... Procrustes: rmse 3.215654e-05  max resid 8.421776e-05 
## ... Similar to previous best
## Run 288 stress 0.1223425 
## Run 289 stress 0.02169059 
## ... Procrustes: rmse 4.147597e-06  max resid 1.05342e-05 
## ... Similar to previous best
## Run 290 stress 0.3157046 
## Run 291 stress 0.02169059 
## ... Procrustes: rmse 1.085109e-06  max resid 1.688108e-06 
## ... Similar to previous best
## Run 292 stress 0.02169059 
## ... Procrustes: rmse 2.048062e-05  max resid 4.99745e-05 
## ... Similar to previous best
## Run 293 stress 0.02169059 
## ... Procrustes: rmse 3.673153e-06  max resid 8.986777e-06 
## ... Similar to previous best
## Run 294 stress 0.02169059 
## ... Procrustes: rmse 5.472977e-06  max resid 1.426624e-05 
## ... Similar to previous best
## Run 295 stress 0.06608976 
## Run 296 stress 0.02169059 
## ... Procrustes: rmse 2.62083e-06  max resid 4.283234e-06 
## ... Similar to previous best
## Run 297 stress 0.02169061 
## ... Procrustes: rmse 1.229136e-05  max resid 2.359322e-05 
## ... Similar to previous best
## Run 298 stress 0.02169059 
## ... Procrustes: rmse 2.284282e-05  max resid 5.893928e-05 
## ... Similar to previous best
## Run 299 stress 0.02169059 
## ... Procrustes: rmse 2.928524e-06  max resid 3.78907e-06 
## ... Similar to previous best
## Run 300 stress 0.02169059 
## ... Procrustes: rmse 2.285542e-06  max resid 6.144151e-06 
## ... Similar to previous best
## Run 301 stress 0.02169059 
## ... Procrustes: rmse 1.183588e-06  max resid 2.062473e-06 
## ... Similar to previous best
## Run 302 stress 0.06608976 
## Run 303 stress 0.2850338 
## Run 304 stress 0.02169059 
## ... Procrustes: rmse 1.224638e-05  max resid 3.19032e-05 
## ... Similar to previous best
## Run 305 stress 0.02169059 
## ... Procrustes: rmse 5.483349e-06  max resid 1.304932e-05 
## ... Similar to previous best
## Run 306 stress 0.02169059 
## ... Procrustes: rmse 2.574892e-06  max resid 3.781145e-06 
## ... Similar to previous best
## Run 307 stress 0.06608976 
## Run 308 stress 0.1223428 
## Run 309 stress 0.125519 
## Run 310 stress 0.02169059 
## ... Procrustes: rmse 2.986589e-06  max resid 6.536468e-06 
## ... Similar to previous best
## Run 311 stress 0.02169059 
## ... Procrustes: rmse 1.037201e-06  max resid 1.758263e-06 
## ... Similar to previous best
## Run 312 stress 0.02169059 
## ... Procrustes: rmse 4.501315e-06  max resid 1.186785e-05 
## ... Similar to previous best
## Run 313 stress 0.0216906 
## ... Procrustes: rmse 2.812204e-05  max resid 7.354077e-05 
## ... Similar to previous best
## Run 314 stress 0.02169059 
## ... Procrustes: rmse 1.489341e-05  max resid 3.845911e-05 
## ... Similar to previous best
## Run 315 stress 0.02169059 
## ... Procrustes: rmse 1.225499e-05  max resid 2.564589e-05 
## ... Similar to previous best
## Run 316 stress 0.02169059 
## ... Procrustes: rmse 8.424778e-06  max resid 2.134455e-05 
## ... Similar to previous best
## Run 317 stress 0.02169059 
## ... Procrustes: rmse 7.068847e-06  max resid 1.931308e-05 
## ... Similar to previous best
## Run 318 stress 0.02169059 
## ... Procrustes: rmse 2.533954e-05  max resid 6.233724e-05 
## ... Similar to previous best
## Run 319 stress 0.02169059 
## ... Procrustes: rmse 5.43644e-06  max resid 1.385763e-05 
## ... Similar to previous best
## Run 320 stress 0.02169059 
## ... Procrustes: rmse 5.912315e-06  max resid 1.06871e-05 
## ... Similar to previous best
## Run 321 stress 0.02169059 
## ... Procrustes: rmse 4.043358e-06  max resid 8.431126e-06 
## ... Similar to previous best
## Run 322 stress 0.02169059 
## ... Procrustes: rmse 3.405245e-06  max resid 9.168541e-06 
## ... Similar to previous best
## Run 323 stress 0.02169059 
## ... Procrustes: rmse 1.245065e-05  max resid 3.383034e-05 
## ... Similar to previous best
## Run 324 stress 0.02169059 
## ... Procrustes: rmse 1.902815e-05  max resid 4.903303e-05 
## ... Similar to previous best
## Run 325 stress 0.02169059 
## ... Procrustes: rmse 1.557912e-05  max resid 3.971984e-05 
## ... Similar to previous best
## Run 326 stress 0.06608976 
## Run 327 stress 0.02169059 
## ... Procrustes: rmse 4.272822e-06  max resid 1.062226e-05 
## ... Similar to previous best
## Run 328 stress 0.06608976 
## Run 329 stress 0.02169059 
## ... Procrustes: rmse 7.449634e-06  max resid 1.517537e-05 
## ... Similar to previous best
## Run 330 stress 0.06608976 
## Run 331 stress 0.1199826 
## Run 332 stress 0.02169059 
## ... Procrustes: rmse 2.405253e-05  max resid 6.024737e-05 
## ... Similar to previous best
## Run 333 stress 0.02169059 
## ... Procrustes: rmse 2.519454e-06  max resid 6.41436e-06 
## ... Similar to previous best
## Run 334 stress 0.02169059 
## ... Procrustes: rmse 6.51532e-06  max resid 1.629706e-05 
## ... Similar to previous best
## Run 335 stress 0.02169059 
## ... Procrustes: rmse 8.856487e-06  max resid 2.245504e-05 
## ... Similar to previous best
## Run 336 stress 0.02169059 
## ... Procrustes: rmse 6.723247e-06  max resid 1.640384e-05 
## ... Similar to previous best
## Run 337 stress 0.02169059 
## ... Procrustes: rmse 6.886255e-06  max resid 1.824988e-05 
## ... Similar to previous best
## Run 338 stress 0.02169059 
## ... Procrustes: rmse 1.054634e-05  max resid 2.739449e-05 
## ... Similar to previous best
## Run 339 stress 0.02169059 
## ... Procrustes: rmse 1.142273e-05  max resid 2.842518e-05 
## ... Similar to previous best
## Run 340 stress 0.02169059 
## ... Procrustes: rmse 8.176165e-06  max resid 2.178986e-05 
## ... Similar to previous best
## Run 341 stress 0.02169059 
## ... Procrustes: rmse 2.784223e-06  max resid 7.229843e-06 
## ... Similar to previous best
## Run 342 stress 0.02169059 
## ... Procrustes: rmse 4.771313e-06  max resid 8.171872e-06 
## ... Similar to previous best
## Run 343 stress 0.02169059 
## ... Procrustes: rmse 1.58583e-05  max resid 3.864055e-05 
## ... Similar to previous best
## Run 344 stress 0.02169059 
## ... Procrustes: rmse 3.30839e-06  max resid 5.81406e-06 
## ... Similar to previous best
## Run 345 stress 0.02169059 
## ... Procrustes: rmse 9.099235e-06  max resid 1.668721e-05 
## ... Similar to previous best
## Run 346 stress 0.02169059 
## ... Procrustes: rmse 7.209847e-06  max resid 1.751398e-05 
## ... Similar to previous best
## Run 347 stress 0.06608976 
## Run 348 stress 0.02169059 
## ... Procrustes: rmse 1.502358e-05  max resid 3.85576e-05 
## ... Similar to previous best
## Run 349 stress 0.02169059 
## ... Procrustes: rmse 5.797363e-06  max resid 1.258108e-05 
## ... Similar to previous best
## Run 350 stress 0.02169059 
## ... Procrustes: rmse 6.584141e-06  max resid 1.651205e-05 
## ... Similar to previous best
## Run 351 stress 0.02169059 
## ... Procrustes: rmse 1.325061e-06  max resid 2.208057e-06 
## ... Similar to previous best
## Run 352 stress 0.02169059 
## ... Procrustes: rmse 7.129038e-06  max resid 1.551479e-05 
## ... Similar to previous best
## Run 353 stress 0.02169059 
## ... Procrustes: rmse 1.213905e-05  max resid 2.917992e-05 
## ... Similar to previous best
## Run 354 stress 0.02169059 
## ... Procrustes: rmse 2.672324e-06  max resid 5.120165e-06 
## ... Similar to previous best
## Run 355 stress 0.02169059 
## ... Procrustes: rmse 1.200941e-05  max resid 3.084242e-05 
## ... Similar to previous best
## Run 356 stress 0.1221372 
## Run 357 stress 0.02169059 
## ... Procrustes: rmse 3.090732e-06  max resid 7.760157e-06 
## ... Similar to previous best
## Run 358 stress 0.1199826 
## Run 359 stress 0.02169059 
## ... Procrustes: rmse 2.338641e-06  max resid 3.907797e-06 
## ... Similar to previous best
## Run 360 stress 0.0216906 
## ... Procrustes: rmse 2.596527e-05  max resid 6.723069e-05 
## ... Similar to previous best
## Run 361 stress 0.02169059 
## ... Procrustes: rmse 2.016632e-05  max resid 5.199071e-05 
## ... Similar to previous best
## Run 362 stress 0.1221382 
## Run 363 stress 0.02169059 
## ... Procrustes: rmse 1.499216e-05  max resid 3.864113e-05 
## ... Similar to previous best
## Run 364 stress 0.06608976 
## Run 365 stress 0.02169059 
## ... Procrustes: rmse 7.246244e-06  max resid 1.63018e-05 
## ... Similar to previous best
## Run 366 stress 0.02169059 
## ... Procrustes: rmse 6.449822e-06  max resid 1.666097e-05 
## ... Similar to previous best
## Run 367 stress 0.1255191 
## Run 368 stress 0.02169059 
## ... Procrustes: rmse 9.406313e-07  max resid 1.70971e-06 
## ... Similar to previous best
## Run 369 stress 0.02169059 
## ... Procrustes: rmse 3.946568e-06  max resid 1.034301e-05 
## ... Similar to previous best
## Run 370 stress 0.1223429 
## Run 371 stress 0.02169059 
## ... Procrustes: rmse 4.242135e-06  max resid 8.439268e-06 
## ... Similar to previous best
## Run 372 stress 0.06608976 
## Run 373 stress 0.02169059 
## ... Procrustes: rmse 7.731217e-06  max resid 1.991977e-05 
## ... Similar to previous best
## Run 374 stress 0.1208473 
## Run 375 stress 0.1208472 
## Run 376 stress 0.02169059 
## ... Procrustes: rmse 2.578668e-06  max resid 5.76969e-06 
## ... Similar to previous best
## Run 377 stress 0.02169059 
## ... Procrustes: rmse 6.109811e-06  max resid 1.367169e-05 
## ... Similar to previous best
## Run 378 stress 0.02169059 
## ... Procrustes: rmse 1.595152e-06  max resid 3.182918e-06 
## ... Similar to previous best
## Run 379 stress 0.02169059 
## ... Procrustes: rmse 6.15227e-06  max resid 1.4704e-05 
## ... Similar to previous best
## Run 380 stress 0.02169059 
## ... Procrustes: rmse 1.444146e-05  max resid 3.663193e-05 
## ... Similar to previous best
## Run 381 stress 0.02169059 
## ... Procrustes: rmse 3.400404e-06  max resid 6.197576e-06 
## ... Similar to previous best
## Run 382 stress 0.02169059 
## ... Procrustes: rmse 3.378488e-06  max resid 8.850008e-06 
## ... Similar to previous best
## Run 383 stress 0.02169059 
## ... Procrustes: rmse 5.897707e-06  max resid 1.555752e-05 
## ... Similar to previous best
## Run 384 stress 0.02169059 
## ... Procrustes: rmse 1.276917e-05  max resid 2.91009e-05 
## ... Similar to previous best
## Run 385 stress 0.0216906 
## ... Procrustes: rmse 3.124412e-05  max resid 7.837537e-05 
## ... Similar to previous best
## Run 386 stress 0.02169059 
## ... Procrustes: rmse 1.925983e-05  max resid 4.96676e-05 
## ... Similar to previous best
## Run 387 stress 0.02169059 
## ... Procrustes: rmse 2.246222e-05  max resid 5.602863e-05 
## ... Similar to previous best
## Run 388 stress 0.02169059 
## ... Procrustes: rmse 6.278226e-06  max resid 1.698847e-05 
## ... Similar to previous best
## Run 389 stress 0.06608976 
## Run 390 stress 0.02169059 
## ... Procrustes: rmse 1.428119e-05  max resid 3.598061e-05 
## ... Similar to previous best
## Run 391 stress 0.1003185 
## Run 392 stress 0.06608976 
## Run 393 stress 0.02169059 
## ... Procrustes: rmse 3.939116e-06  max resid 9.820301e-06 
## ... Similar to previous best
## Run 394 stress 0.02169059 
## ... Procrustes: rmse 9.879946e-06  max resid 2.533396e-05 
## ... Similar to previous best
## Run 395 stress 0.2782524 
## Run 396 stress 0.02169059 
## ... Procrustes: rmse 6.116566e-06  max resid 1.646012e-05 
## ... Similar to previous best
## Run 397 stress 0.02169059 
## ... Procrustes: rmse 1.038948e-05  max resid 2.815941e-05 
## ... Similar to previous best
## Run 398 stress 0.02169059 
## ... Procrustes: rmse 2.441605e-06  max resid 5.765337e-06 
## ... Similar to previous best
## Run 399 stress 0.02169059 
## ... Procrustes: rmse 6.006437e-06  max resid 1.478104e-05 
## ... Similar to previous best
## Run 400 stress 0.02169059 
## ... Procrustes: rmse 2.08273e-06  max resid 3.511852e-06 
## ... Similar to previous best
## Run 401 stress 0.02169059 
## ... Procrustes: rmse 1.274132e-05  max resid 3.343797e-05 
## ... Similar to previous best
## Run 402 stress 0.02169059 
## ... Procrustes: rmse 4.86883e-06  max resid 9.295102e-06 
## ... Similar to previous best
## Run 403 stress 0.06608976 
## Run 404 stress 0.02169059 
## ... Procrustes: rmse 1.767308e-05  max resid 4.415718e-05 
## ... Similar to previous best
## Run 405 stress 0.0216906 
## ... Procrustes: rmse 3.162082e-05  max resid 8.145578e-05 
## ... Similar to previous best
## Run 406 stress 0.02169059 
## ... Procrustes: rmse 9.807054e-06  max resid 2.238752e-05 
## ... Similar to previous best
## Run 407 stress 0.02169059 
## ... Procrustes: rmse 6.433012e-06  max resid 1.587074e-05 
## ... Similar to previous best
## Run 408 stress 0.0216906 
## ... Procrustes: rmse 2.473607e-05  max resid 6.439514e-05 
## ... Similar to previous best
## Run 409 stress 0.02169059 
## ... Procrustes: rmse 1.787638e-05  max resid 3.680917e-05 
## ... Similar to previous best
## Run 410 stress 0.02169059 
## ... Procrustes: rmse 1.779489e-05  max resid 4.216982e-05 
## ... Similar to previous best
## Run 411 stress 0.06608976 
## Run 412 stress 0.02169059 
## ... Procrustes: rmse 2.934311e-06  max resid 5.644619e-06 
## ... Similar to previous best
## Run 413 stress 0.02169059 
## ... Procrustes: rmse 1.245442e-05  max resid 3.194743e-05 
## ... Similar to previous best
## Run 414 stress 0.06608976 
## Run 415 stress 0.02169059 
## ... Procrustes: rmse 2.61895e-06  max resid 6.200008e-06 
## ... Similar to previous best
## Run 416 stress 0.02169059 
## ... Procrustes: rmse 7.810155e-06  max resid 1.950797e-05 
## ... Similar to previous best
## Run 417 stress 0.02169059 
## ... Procrustes: rmse 1.922928e-05  max resid 4.816067e-05 
## ... Similar to previous best
## Run 418 stress 0.02169059 
## ... Procrustes: rmse 2.168409e-06  max resid 4.372777e-06 
## ... Similar to previous best
## Run 419 stress 0.06608976 
## Run 420 stress 0.02169059 
## ... Procrustes: rmse 4.818164e-06  max resid 1.238087e-05 
## ... Similar to previous best
## Run 421 stress 0.02169059 
## ... Procrustes: rmse 6.943152e-06  max resid 1.832948e-05 
## ... Similar to previous best
## Run 422 stress 0.06608976 
## Run 423 stress 0.02169059 
## ... Procrustes: rmse 2.309933e-06  max resid 5.980854e-06 
## ... Similar to previous best
## Run 424 stress 0.02169059 
## ... Procrustes: rmse 2.630861e-05  max resid 6.523316e-05 
## ... Similar to previous best
## Run 425 stress 0.06608976 
## Run 426 stress 0.02169059 
## ... Procrustes: rmse 1.876695e-05  max resid 4.816312e-05 
## ... Similar to previous best
## Run 427 stress 0.02169059 
## ... Procrustes: rmse 2.911778e-06  max resid 7.692775e-06 
## ... Similar to previous best
## Run 428 stress 0.1223424 
## Run 429 stress 0.06608976 
## Run 430 stress 0.02169059 
## ... Procrustes: rmse 3.909658e-06  max resid 9.556259e-06 
## ... Similar to previous best
## Run 431 stress 0.0216906 
## ... Procrustes: rmse 2.714909e-05  max resid 6.841609e-05 
## ... Similar to previous best
## Run 432 stress 0.02169059 
## ... Procrustes: rmse 7.644531e-06  max resid 1.959228e-05 
## ... Similar to previous best
## Run 433 stress 0.06608976 
## Run 434 stress 0.02169059 
## ... Procrustes: rmse 4.537838e-06  max resid 8.742242e-06 
## ... Similar to previous best
## Run 435 stress 0.02169059 
## ... Procrustes: rmse 4.194112e-06  max resid 1.077651e-05 
## ... Similar to previous best
## Run 436 stress 0.06608976 
## Run 437 stress 0.02169059 
## ... Procrustes: rmse 5.682567e-06  max resid 1.50186e-05 
## ... Similar to previous best
## Run 438 stress 0.02169059 
## ... Procrustes: rmse 5.990555e-06  max resid 1.223219e-05 
## ... Similar to previous best
## Run 439 stress 0.0216906 
## ... Procrustes: rmse 3.069765e-05  max resid 7.787803e-05 
## ... Similar to previous best
## Run 440 stress 0.02169059 
## ... Procrustes: rmse 1.558274e-05  max resid 3.922267e-05 
## ... Similar to previous best
## Run 441 stress 0.02169059 
## ... Procrustes: rmse 5.548166e-06  max resid 1.197009e-05 
## ... Similar to previous best
## Run 442 stress 0.02169059 
## ... Procrustes: rmse 7.641599e-06  max resid 1.575065e-05 
## ... Similar to previous best
## Run 443 stress 0.06608976 
## Run 444 stress 0.02169059 
## ... Procrustes: rmse 8.093457e-06  max resid 1.969214e-05 
## ... Similar to previous best
## Run 445 stress 0.02169059 
## ... Procrustes: rmse 1.170559e-05  max resid 2.991166e-05 
## ... Similar to previous best
## Run 446 stress 0.06608976 
## Run 447 stress 0.3403702 
## Run 448 stress 0.02169059 
## ... Procrustes: rmse 1.109109e-05  max resid 2.732094e-05 
## ... Similar to previous best
## Run 449 stress 0.02169059 
## ... Procrustes: rmse 8.09627e-07  max resid 1.302912e-06 
## ... Similar to previous best
## Run 450 stress 0.02169059 
## ... Procrustes: rmse 2.12517e-05  max resid 5.283935e-05 
## ... Similar to previous best
## Run 451 stress 0.02169059 
## ... Procrustes: rmse 4.924433e-06  max resid 1.076522e-05 
## ... Similar to previous best
## Run 452 stress 0.02169059 
## ... Procrustes: rmse 6.64927e-06  max resid 1.562704e-05 
## ... Similar to previous best
## Run 453 stress 0.06608976 
## Run 454 stress 0.02169059 
## ... Procrustes: rmse 2.245023e-06  max resid 5.401344e-06 
## ... Similar to previous best
## Run 455 stress 0.02169059 
## ... Procrustes: rmse 6.859999e-06  max resid 1.658281e-05 
## ... Similar to previous best
## Run 456 stress 0.1208472 
## Run 457 stress 0.02169059 
## ... Procrustes: rmse 5.438026e-06  max resid 1.226957e-05 
## ... Similar to previous best
## Run 458 stress 0.02169059 
## ... Procrustes: rmse 9.877856e-06  max resid 2.437767e-05 
## ... Similar to previous best
## Run 459 stress 0.02169059 
## ... Procrustes: rmse 3.124906e-06  max resid 8.21106e-06 
## ... Similar to previous best
## Run 460 stress 0.02169059 
## ... Procrustes: rmse 9.741047e-06  max resid 2.441042e-05 
## ... Similar to previous best
## Run 461 stress 0.02169059 
## ... Procrustes: rmse 7.799106e-06  max resid 1.627724e-05 
## ... Similar to previous best
## Run 462 stress 0.02169059 
## ... Procrustes: rmse 1.145442e-05  max resid 3.116786e-05 
## ... Similar to previous best
## Run 463 stress 0.02169059 
## ... Procrustes: rmse 6.111696e-06  max resid 1.467281e-05 
## ... Similar to previous best
## Run 464 stress 0.02169059 
## ... Procrustes: rmse 3.744773e-06  max resid 9.264248e-06 
## ... Similar to previous best
## Run 465 stress 0.02169059 
## ... Procrustes: rmse 2.925413e-06  max resid 7.669836e-06 
## ... Similar to previous best
## Run 466 stress 0.02169059 
## ... Procrustes: rmse 5.439842e-06  max resid 1.070238e-05 
## ... Similar to previous best
## Run 467 stress 0.02169059 
## ... Procrustes: rmse 3.685503e-06  max resid 7.432283e-06 
## ... Similar to previous best
## Run 468 stress 0.02169059 
## ... Procrustes: rmse 9.978312e-06  max resid 2.621889e-05 
## ... Similar to previous best
## Run 469 stress 0.06608976 
## Run 470 stress 0.02169059 
## ... Procrustes: rmse 2.478741e-06  max resid 5.849657e-06 
## ... Similar to previous best
## Run 471 stress 0.02169059 
## ... Procrustes: rmse 1.031016e-05  max resid 2.656765e-05 
## ... Similar to previous best
## Run 472 stress 0.02169059 
## ... Procrustes: rmse 1.381854e-05  max resid 3.453972e-05 
## ... Similar to previous best
## Run 473 stress 0.02169059 
## ... Procrustes: rmse 1.706112e-05  max resid 4.461857e-05 
## ... Similar to previous best
## Run 474 stress 0.02169059 
## ... Procrustes: rmse 7.564432e-06  max resid 1.965851e-05 
## ... Similar to previous best
## Run 475 stress 0.0216906 
## ... Procrustes: rmse 2.554668e-05  max resid 6.334215e-05 
## ... Similar to previous best
## Run 476 stress 0.06608976 
## Run 477 stress 0.02169059 
## ... Procrustes: rmse 8.09441e-06  max resid 2.091696e-05 
## ... Similar to previous best
## Run 478 stress 0.02169059 
## ... Procrustes: rmse 1.913716e-05  max resid 5.030055e-05 
## ... Similar to previous best
## Run 479 stress 0.02169059 
## ... Procrustes: rmse 1.821113e-05  max resid 4.516937e-05 
## ... Similar to previous best
## Run 480 stress 0.02169059 
## ... Procrustes: rmse 7.815976e-06  max resid 1.690971e-05 
## ... Similar to previous best
## Run 481 stress 0.02169059 
## ... Procrustes: rmse 8.938665e-06  max resid 2.269012e-05 
## ... Similar to previous best
## Run 482 stress 0.02169059 
## ... Procrustes: rmse 6.318596e-06  max resid 1.652312e-05 
## ... Similar to previous best
## Run 483 stress 0.02169059 
## ... Procrustes: rmse 3.573941e-06  max resid 7.117891e-06 
## ... Similar to previous best
## Run 484 stress 0.02169059 
## ... Procrustes: rmse 1.931601e-05  max resid 4.82781e-05 
## ... Similar to previous best
## Run 485 stress 0.06608976 
## Run 486 stress 0.02169059 
## ... Procrustes: rmse 1.572054e-05  max resid 4.024382e-05 
## ... Similar to previous best
## Run 487 stress 0.06608976 
## Run 488 stress 0.02169059 
## ... Procrustes: rmse 1.707444e-06  max resid 4.338739e-06 
## ... Similar to previous best
## Run 489 stress 0.1223433 
## Run 490 stress 0.06608976 
## Run 491 stress 0.02169059 
## ... Procrustes: rmse 4.034196e-06  max resid 1.070681e-05 
## ... Similar to previous best
## Run 492 stress 0.1244005 
## Run 493 stress 0.1223427 
## Run 494 stress 0.06608976 
## Run 495 stress 0.02169059 
## ... Procrustes: rmse 3.151897e-06  max resid 5.128838e-06 
## ... Similar to previous best
## Run 496 stress 0.02169059 
## ... Procrustes: rmse 2.442547e-05  max resid 6.375451e-05 
## ... Similar to previous best
## Run 497 stress 0.02169059 
## ... Procrustes: rmse 1.459883e-05  max resid 3.661814e-05 
## ... Similar to previous best
## Run 498 stress 0.02169059 
## ... Procrustes: rmse 6.123225e-06  max resid 1.651022e-05 
## ... Similar to previous best
## Run 499 stress 0.02169059 
## ... Procrustes: rmse 1.730616e-05  max resid 4.254217e-05 
## ... Similar to previous best
## Run 500 stress 0.06608976 
## *** Best solution repeated 253 times
### Biogeographic
# All sites 
envb_NMDS <- metaMDS(envb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.0162662 
## Run 1 stress 0.01626606 
## ... New best solution
## ... Procrustes: rmse 5.712361e-05  max resid 0.000169849 
## ... Similar to previous best
## Run 2 stress 0.01626602 
## ... New best solution
## ... Procrustes: rmse 2.885439e-05  max resid 8.524967e-05 
## ... Similar to previous best
## Run 3 stress 0.01626613 
## ... Procrustes: rmse 0.0004948126  max resid 0.001483172 
## ... Similar to previous best
## Run 4 stress 0.0162662 
## ... Procrustes: rmse 0.0005311018  max resid 0.001593173 
## ... Similar to previous best
## Run 5 stress 0.01626599 
## ... New best solution
## ... Procrustes: rmse 2.060672e-05  max resid 5.844766e-05 
## ... Similar to previous best
## Run 6 stress 0.016266 
## ... Procrustes: rmse 9.568717e-06  max resid 2.69955e-05 
## ... Similar to previous best
## Run 7 stress 0.01626601 
## ... Procrustes: rmse 0.0004153208  max resid 0.001243791 
## ... Similar to previous best
## Run 8 stress 0.01626604 
## ... Procrustes: rmse 0.0004367874  max resid 0.001308221 
## ... Similar to previous best
## Run 9 stress 0.01626609 
## ... Procrustes: rmse 0.0004545806  max resid 0.001361837 
## ... Similar to previous best
## Run 10 stress 0.01626605 
## ... Procrustes: rmse 4.097533e-05  max resid 0.0001220673 
## ... Similar to previous best
## Run 11 stress 0.016266 
## ... Procrustes: rmse 0.0004113825  max resid 0.001231989 
## ... Similar to previous best
## Run 12 stress 0.01626646 
## ... Procrustes: rmse 0.0006030804  max resid 0.001811849 
## ... Similar to previous best
## Run 13 stress 0.01626605 
## ... Procrustes: rmse 3.498153e-05  max resid 0.0001040846 
## ... Similar to previous best
## Run 14 stress 0.01626617 
## ... Procrustes: rmse 0.000498224  max resid 0.001494274 
## ... Similar to previous best
## Run 15 stress 0.01626609 
## ... Procrustes: rmse 5.673349e-05  max resid 0.0001689632 
## ... Similar to previous best
## Run 16 stress 0.01626622 
## ... Procrustes: rmse 0.0005105842  max resid 0.001531658 
## ... Similar to previous best
## Run 17 stress 0.01626607 
## ... Procrustes: rmse 0.0004510312  max resid 0.001351196 
## ... Similar to previous best
## Run 18 stress 0.01626612 
## ... Procrustes: rmse 6.848724e-05  max resid 0.0002016984 
## ... Similar to previous best
## Run 19 stress 0.01626617 
## ... Procrustes: rmse 9.207339e-05  max resid 0.0002749687 
## ... Similar to previous best
## Run 20 stress 0.01626612 
## ... Procrustes: rmse 7.026021e-05  max resid 0.0002091353 
## ... Similar to previous best
## Run 21 stress 0.01626612 
## ... Procrustes: rmse 7.741612e-05  max resid 0.0002316927 
## ... Similar to previous best
## Run 22 stress 0.01626619 
## ... Procrustes: rmse 0.0005060751  max resid 0.001518103 
## ... Similar to previous best
## Run 23 stress 0.0162662 
## ... Procrustes: rmse 0.0005139202  max resid 0.001541901 
## ... Similar to previous best
## Run 24 stress 0.01626596 
## ... New best solution
## ... Procrustes: rmse 1.619581e-05  max resid 4.755601e-05 
## ... Similar to previous best
## Run 25 stress 0.01626615 
## ... Procrustes: rmse 0.0004726727  max resid 0.001417369 
## ... Similar to previous best
## Run 26 stress 0.01626626 
## ... Procrustes: rmse 0.0005216018  max resid 0.001565805 
## ... Similar to previous best
## Run 27 stress 0.01626602 
## ... Procrustes: rmse 2.920667e-05  max resid 8.497253e-05 
## ... Similar to previous best
## Run 28 stress 0.016266 
## ... Procrustes: rmse 0.0003977821  max resid 0.001191303 
## ... Similar to previous best
## Run 29 stress 0.01626609 
## ... Procrustes: rmse 0.0004375168  max resid 0.001310505 
## ... Similar to previous best
## Run 30 stress 0.01626625 
## ... Procrustes: rmse 0.0005191329  max resid 0.001558337 
## ... Similar to previous best
## Run 31 stress 0.01626604 
## ... Procrustes: rmse 0.0004158458  max resid 0.001245502 
## ... Similar to previous best
## Run 32 stress 0.01626614 
## ... Procrustes: rmse 0.0004646264  max resid 0.001392894 
## ... Similar to previous best
## Run 33 stress 0.01626629 
## ... Procrustes: rmse 0.0005195327  max resid 0.001559259 
## ... Similar to previous best
## Run 34 stress 0.01626597 
## ... Procrustes: rmse 0.0003757001  max resid 0.001125125 
## ... Similar to previous best
## Run 35 stress 0.0162659 
## ... New best solution
## ... Procrustes: rmse 4.922929e-05  max resid 0.0001471877 
## ... Similar to previous best
## Run 36 stress 0.01626618 
## ... Procrustes: rmse 0.0001549626  max resid 0.0004636498 
## ... Similar to previous best
## Run 37 stress 0.01626602 
## ... Procrustes: rmse 0.0003609525  max resid 0.001080954 
## ... Similar to previous best
## Run 38 stress 0.01626594 
## ... Procrustes: rmse 0.0003041746  max resid 0.0009105469 
## ... Similar to previous best
## Run 39 stress 0.0162661 
## ... Procrustes: rmse 0.000132964  max resid 0.0003982212 
## ... Similar to previous best
## Run 40 stress 0.01626594 
## ... Procrustes: rmse 0.0003080226  max resid 0.0009222395 
## ... Similar to previous best
## Run 41 stress 0.01626627 
## ... Procrustes: rmse 0.0004756276  max resid 0.001428148 
## ... Similar to previous best
## Run 42 stress 0.0162661 
## ... Procrustes: rmse 0.0003989995  max resid 0.001195578 
## ... Similar to previous best
## Run 43 stress 0.01626635 
## ... Procrustes: rmse 0.0005089074  max resid 0.001528994 
## ... Similar to previous best
## Run 44 stress 0.01626604 
## ... Procrustes: rmse 9.558691e-05  max resid 0.0002865694 
## ... Similar to previous best
## Run 45 stress 0.01626605 
## ... Procrustes: rmse 0.0003744488  max resid 0.001121557 
## ... Similar to previous best
## Run 46 stress 0.0162661 
## ... Procrustes: rmse 0.0001282777  max resid 0.0003841562 
## ... Similar to previous best
## Run 47 stress 0.0162662 
## ... Procrustes: rmse 0.0004313784  max resid 0.001293607 
## ... Similar to previous best
## Run 48 stress 0.016266 
## ... Procrustes: rmse 0.0003479248  max resid 0.001041896 
## ... Similar to previous best
## Run 49 stress 0.01626601 
## ... Procrustes: rmse 8.162115e-05  max resid 0.0002443707 
## ... Similar to previous best
## Run 50 stress 0.01626592 
## ... Procrustes: rmse 2.165134e-05  max resid 6.417205e-05 
## ... Similar to previous best
## Run 51 stress 0.01626623 
## ... Procrustes: rmse 0.0004594584  max resid 0.001379125 
## ... Similar to previous best
## Run 52 stress 0.01626633 
## ... Procrustes: rmse 0.0004936933  max resid 0.001482716 
## ... Similar to previous best
## Run 53 stress 0.01626613 
## ... Procrustes: rmse 0.0004129239  max resid 0.001237923 
## ... Similar to previous best
## Run 54 stress 0.01626617 
## ... Procrustes: rmse 0.0001488957  max resid 0.000444976 
## ... Similar to previous best
## Run 55 stress 0.01626606 
## ... Procrustes: rmse 0.0003801413  max resid 0.00113867 
## ... Similar to previous best
## Run 56 stress 0.01626626 
## ... Procrustes: rmse 0.0001830285  max resid 0.0005475411 
## ... Similar to previous best
## Run 57 stress 0.01626613 
## ... Procrustes: rmse 0.000144557  max resid 0.0004329601 
## ... Similar to previous best
## Run 58 stress 0.01626621 
## ... Procrustes: rmse 0.0004521004  max resid 0.001356814 
## ... Similar to previous best
## Run 59 stress 0.01626593 
## ... Procrustes: rmse 0.0002968717  max resid 0.0008888419 
## ... Similar to previous best
## Run 60 stress 0.01626604 
## ... Procrustes: rmse 0.0003692716  max resid 0.001106023 
## ... Similar to previous best
## Run 61 stress 0.01626621 
## ... Procrustes: rmse 0.0001792758  max resid 0.0005369291 
## ... Similar to previous best
## Run 62 stress 0.0162661 
## ... Procrustes: rmse 0.0003949005  max resid 0.001183068 
## ... Similar to previous best
## Run 63 stress 0.01626599 
## ... Procrustes: rmse 0.0003388729  max resid 0.00101477 
## ... Similar to previous best
## Run 64 stress 0.01626598 
## ... Procrustes: rmse 0.0003334415  max resid 0.0009984583 
## ... Similar to previous best
## Run 65 stress 0.0162661 
## ... Procrustes: rmse 0.0003975525  max resid 0.001191147 
## ... Similar to previous best
## Run 66 stress 0.01626599 
## ... Procrustes: rmse 0.0003382474  max resid 0.001012887 
## ... Similar to previous best
## Run 67 stress 0.01626592 
## ... Procrustes: rmse 0.0002887214  max resid 0.0008644557 
## ... Similar to previous best
## Run 68 stress 0.01626611 
## ... Procrustes: rmse 0.00039178  max resid 0.001173699 
## ... Similar to previous best
## Run 69 stress 0.01626599 
## ... Procrustes: rmse 0.0003387562  max resid 0.00101439 
## ... Similar to previous best
## Run 70 stress 0.01626606 
## ... Procrustes: rmse 0.0001112578  max resid 0.0003332144 
## ... Similar to previous best
## Run 71 stress 0.01626592 
## ... Procrustes: rmse 0.0002898946  max resid 0.0008680136 
## ... Similar to previous best
## Run 72 stress 0.01626618 
## ... Procrustes: rmse 0.0004385471  max resid 0.001315684 
## ... Similar to previous best
## Run 73 stress 0.01626635 
## ... Procrustes: rmse 0.0004994995  max resid 0.001500282 
## ... Similar to previous best
## Run 74 stress 0.01626586 
## ... New best solution
## ... Procrustes: rmse 7.834283e-05  max resid 0.000225784 
## ... Similar to previous best
## Run 75 stress 0.0162661 
## ... Procrustes: rmse 0.000201239  max resid 0.000603525 
## ... Similar to previous best
## Run 76 stress 0.01626609 
## ... Procrustes: rmse 0.0003116593  max resid 0.0009227096 
## ... Similar to previous best
## Run 77 stress 0.0162661 
## ... Procrustes: rmse 0.0002062461  max resid 0.0006189794 
## ... Similar to previous best
## Run 78 stress 0.01626602 
## ... Procrustes: rmse 0.0001536284  max resid 0.0004588846 
## ... Similar to previous best
## Run 79 stress 0.01626607 
## ... Procrustes: rmse 0.0001902227  max resid 0.0005703612 
## ... Similar to previous best
## Run 80 stress 0.01626595 
## ... Procrustes: rmse 0.0002406176  max resid 0.0007089547 
## ... Similar to previous best
## Run 81 stress 0.01626607 
## ... Procrustes: rmse 0.0003161486  max resid 0.0009373104 
## ... Similar to previous best
## Run 82 stress 0.01626619 
## ... Procrustes: rmse 0.0003684023  max resid 0.001096779 
## ... Similar to previous best
## Run 83 stress 0.01626629 
## ... Procrustes: rmse 0.0004094731  max resid 0.001221829 
## ... Similar to previous best
## Run 84 stress 0.01626613 
## ... Procrustes: rmse 0.0002196929  max resid 0.0006596302 
## ... Similar to previous best
## Run 85 stress 0.01626609 
## ... Procrustes: rmse 0.0001997892  max resid 0.0005994485 
## ... Similar to previous best
## Run 86 stress 0.01626611 
## ... Procrustes: rmse 0.0003293662  max resid 0.0009774424 
## ... Similar to previous best
## Run 87 stress 0.01626584 
## ... New best solution
## ... Procrustes: rmse 7.587771e-05  max resid 0.0002891234 
## ... Similar to previous best
## Run 88 stress 0.01626593 
## ... Procrustes: rmse 0.0001566247  max resid 0.0004600406 
## ... Similar to previous best
## Run 89 stress 0.0162662 
## ... Procrustes: rmse 0.0003201865  max resid 0.0009636184 
## ... Similar to previous best
## Run 90 stress 0.01626611 
## ... Procrustes: rmse 0.0002555805  max resid 0.0007578044 
## ... Similar to previous best
## Run 91 stress 0.01626591 
## ... Procrustes: rmse 0.000155245  max resid 0.0004655068 
## ... Similar to previous best
## Run 92 stress 0.01626626 
## ... Procrustes: rmse 0.0003419292  max resid 0.00102949 
## ... Similar to previous best
## Run 93 stress 0.01626627 
## ... Procrustes: rmse 0.000349296  max resid 0.001051848 
## ... Similar to previous best
## Run 94 stress 0.01626604 
## ... Procrustes: rmse 0.0002402362  max resid 0.0007214913 
## ... Similar to previous best
## Run 95 stress 0.01626619 
## ... Procrustes: rmse 0.0003012504  max resid 0.0008953104 
## ... Similar to previous best
## Run 96 stress 0.0162662 
## ... Procrustes: rmse 0.0003159324  max resid 0.0009506899 
## ... Similar to previous best
## Run 97 stress 0.01626598 
## ... Procrustes: rmse 0.0002068043  max resid 0.0006209455 
## ... Similar to previous best
## Run 98 stress 0.01626614 
## ... Procrustes: rmse 0.0002775977  max resid 0.0008243021 
## ... Similar to previous best
## Run 99 stress 0.01626632 
## ... Procrustes: rmse 0.0003708663  max resid 0.001117176 
## ... Similar to previous best
## Run 100 stress 0.01626617 
## ... Procrustes: rmse 0.0002838838  max resid 0.0008428793 
## ... Similar to previous best
## Run 101 stress 0.3789386 
## Run 102 stress 0.01626611 
## ... Procrustes: rmse 0.0002810039  max resid 0.0008447346 
## ... Similar to previous best
## Run 103 stress 0.01626608 
## ... Procrustes: rmse 0.000248218  max resid 0.000740921 
## ... Similar to previous best
## Run 104 stress 0.01626583 
## ... New best solution
## ... Procrustes: rmse 2.740686e-05  max resid 9.561932e-05 
## ... Similar to previous best
## Run 105 stress 0.01626605 
## ... Procrustes: rmse 0.0002658515  max resid 0.0007981398 
## ... Similar to previous best
## Run 106 stress 0.01626611 
## ... Procrustes: rmse 0.0002398143  max resid 0.0007160721 
## ... Similar to previous best
## Run 107 stress 0.01626604 
## ... Procrustes: rmse 0.0002099333  max resid 0.0006266575 
## ... Similar to previous best
## Run 108 stress 0.01626606 
## ... Procrustes: rmse 0.0002745893  max resid 0.000824377 
## ... Similar to previous best
## Run 109 stress 0.01626602 
## ... Procrustes: rmse 0.0001980256  max resid 0.0005896868 
## ... Similar to previous best
## Run 110 stress 0.01626601 
## ... Procrustes: rmse 0.0001874037  max resid 0.0005591232 
## ... Similar to previous best
## Run 111 stress 0.0162661 
## ... Procrustes: rmse 0.000237549  max resid 0.0007094234 
## ... Similar to previous best
## Run 112 stress 0.01626607 
## ... Procrustes: rmse 0.0002211401  max resid 0.0006601363 
## ... Similar to previous best
## Run 113 stress 0.01626601 
## ... Procrustes: rmse 0.0002435866  max resid 0.0007312742 
## ... Similar to previous best
## Run 114 stress 0.01626616 
## ... Procrustes: rmse 0.0002453888  max resid 0.0007322515 
## ... Similar to previous best
## Run 115 stress 0.01626609 
## ... Procrustes: rmse 0.0002244777  max resid 0.0006699707 
## ... Similar to previous best
## Run 116 stress 0.01626648 
## ... Procrustes: rmse 0.000440142  max resid 0.001325094 
## ... Similar to previous best
## Run 117 stress 0.01626613 
## ... Procrustes: rmse 0.0003067838  max resid 0.0009217713 
## ... Similar to previous best
## Run 118 stress 0.01626619 
## ... Procrustes: rmse 0.0003290075  max resid 0.000988984 
## ... Similar to previous best
## Run 119 stress 0.01626613 
## ... Procrustes: rmse 0.0003062979  max resid 0.000920307 
## ... Similar to previous best
## Run 120 stress 0.01626601 
## ... Procrustes: rmse 0.0002437642  max resid 0.0007316891 
## ... Similar to previous best
## Run 121 stress 0.01626608 
## ... Procrustes: rmse 0.0002847051  max resid 0.0008549135 
## ... Similar to previous best
## Run 122 stress 0.01626599 
## ... Procrustes: rmse 0.0002291138  max resid 0.0006878534 
## ... Similar to previous best
## Run 123 stress 0.0162661 
## ... Procrustes: rmse 0.0002263164  max resid 0.0006770191 
## ... Similar to previous best
## Run 124 stress 0.01626633 
## ... Procrustes: rmse 0.0003791628  max resid 0.001140507 
## ... Similar to previous best
## Run 125 stress 0.01626632 
## ... Procrustes: rmse 0.0003927457  max resid 0.001182062 
## ... Similar to previous best
## Run 126 stress 0.01626618 
## ... Procrustes: rmse 0.0003291821  max resid 0.0009895474 
## ... Similar to previous best
## Run 127 stress 0.01626634 
## ... Procrustes: rmse 0.000389724  max resid 0.00117274 
## ... Similar to previous best
## Run 128 stress 0.01626604 
## ... Procrustes: rmse 0.0002042552  max resid 0.000609648 
## ... Similar to previous best
## Run 129 stress 0.01626608 
## ... Procrustes: rmse 0.0002810483  max resid 0.0008438171 
## ... Similar to previous best
## Run 130 stress 0.01626623 
## ... Procrustes: rmse 0.0003546438  max resid 0.001066751 
## ... Similar to previous best
## Run 131 stress 0.01626606 
## ... Procrustes: rmse 0.0002711207  max resid 0.0008139985 
## ... Similar to previous best
## Run 132 stress 0.01626605 
## ... Procrustes: rmse 0.000264903  max resid 0.0007952058 
## ... Similar to previous best
## Run 133 stress 0.01626599 
## ... Procrustes: rmse 0.0002299385  max resid 0.0006903382 
## ... Similar to previous best
## Run 134 stress 0.01626615 
## ... Procrustes: rmse 0.0002564867  max resid 0.0007659197 
## ... Similar to previous best
## Run 135 stress 0.01626594 
## ... Procrustes: rmse 0.0001980724  max resid 0.0005944737 
## ... Similar to previous best
## Run 136 stress 0.01626608 
## ... Procrustes: rmse 0.0002847917  max resid 0.0008551788 
## ... Similar to previous best
## Run 137 stress 0.01626586 
## ... Procrustes: rmse 0.0001115995  max resid 0.0003357979 
## ... Similar to previous best
## Run 138 stress 0.01626601 
## ... Procrustes: rmse 0.0002471358  max resid 0.0007419048 
## ... Similar to previous best
## Run 139 stress 0.01626621 
## ... Procrustes: rmse 0.0002756355  max resid 0.0008231503 
## ... Similar to previous best
## Run 140 stress 0.01626628 
## ... Procrustes: rmse 0.0003584288  max resid 0.001077867 
## ... Similar to previous best
## Run 141 stress 0.01626606 
## ... Procrustes: rmse 0.0002727079  max resid 0.0008187414 
## ... Similar to previous best
## Run 142 stress 0.01626593 
## ... Procrustes: rmse 0.0001361041  max resid 0.0004053888 
## ... Similar to previous best
## Run 143 stress 0.01626618 
## ... Procrustes: rmse 0.0003318315  max resid 0.0009976613 
## ... Similar to previous best
## Run 144 stress 0.01626608 
## ... Procrustes: rmse 0.0002788905  max resid 0.0008373263 
## ... Similar to previous best
## Run 145 stress 0.01626597 
## ... Procrustes: rmse 0.0002207157  max resid 0.0006624747 
## ... Similar to previous best
## Run 146 stress 0.0162662 
## ... Procrustes: rmse 0.0003382914  max resid 0.001017212 
## ... Similar to previous best
## Run 147 stress 0.0162662 
## ... Procrustes: rmse 0.0003373196  max resid 0.001014274 
## ... Similar to previous best
## Run 148 stress 0.01626609 
## ... Procrustes: rmse 0.0002791626  max resid 0.0008379722 
## ... Similar to previous best
## Run 149 stress 0.01626593 
## ... Procrustes: rmse 0.0001361304  max resid 0.0004054487 
## ... Similar to previous best
## Run 150 stress 0.01626602 
## ... Procrustes: rmse 0.0001961627  max resid 0.0005853875 
## ... Similar to previous best
## Run 151 stress 0.01626607 
## ... Procrustes: rmse 0.0002222858  max resid 0.0006636695 
## ... Similar to previous best
## Run 152 stress 0.01626625 
## ... Procrustes: rmse 0.0003601107  max resid 0.001083299 
## ... Similar to previous best
## Run 153 stress 0.01626604 
## ... Procrustes: rmse 0.0002638059  max resid 0.0007919356 
## ... Similar to previous best
## Run 154 stress 0.01626617 
## ... Procrustes: rmse 0.0002729936  max resid 0.000815619 
## ... Similar to previous best
## Run 155 stress 0.01626599 
## ... Procrustes: rmse 0.0001729493  max resid 0.0005155897 
## ... Similar to previous best
## Run 156 stress 0.3789043 
## Run 157 stress 0.01626595 
## ... Procrustes: rmse 0.0002076161  max resid 0.0006234793 
## ... Similar to previous best
## Run 158 stress 0.01626609 
## ... Procrustes: rmse 0.0002319183  max resid 0.0006925591 
## ... Similar to previous best
## Run 159 stress 0.0162659 
## ... Procrustes: rmse 0.0001647367  max resid 0.0004949898 
## ... Similar to previous best
## Run 160 stress 0.01626616 
## ... Procrustes: rmse 0.0002688618  max resid 0.0008032761 
## ... Similar to previous best
## Run 161 stress 0.01626618 
## ... Procrustes: rmse 0.0003308689  max resid 0.000994759 
## ... Similar to previous best
## Run 162 stress 0.01626616 
## ... Procrustes: rmse 0.0003120506  max resid 0.0009374779 
## ... Similar to previous best
## Run 163 stress 0.01626606 
## ... Procrustes: rmse 0.0002204059  max resid 0.0006580215 
## ... Similar to previous best
## Run 164 stress 0.01626628 
## ... Procrustes: rmse 0.0003687665  max resid 0.001109381 
## ... Similar to previous best
## Run 165 stress 0.01626635 
## ... Procrustes: rmse 0.0003968546  max resid 0.001194313 
## ... Similar to previous best
## Run 166 stress 0.016266 
## ... Procrustes: rmse 0.0001829823  max resid 0.0005458125 
## ... Similar to previous best
## Run 167 stress 0.01626607 
## ... Procrustes: rmse 0.0002652911  max resid 0.0007960884 
## ... Similar to previous best
## Run 168 stress 0.01626617 
## ... Procrustes: rmse 0.000269464  max resid 0.0008050679 
## ... Similar to previous best
## Run 169 stress 0.01626618 
## ... Procrustes: rmse 0.000323436  max resid 0.000972098 
## ... Similar to previous best
## Run 170 stress 0.01626613 
## ... Procrustes: rmse 0.0002535291  max resid 0.0007572713 
## ... Similar to previous best
## Run 171 stress 0.01626603 
## ... Procrustes: rmse 0.0002457035  max resid 0.0007373352 
## ... Similar to previous best
## Run 172 stress 0.01626597 
## ... Procrustes: rmse 0.0002158367  max resid 0.0006480561 
## ... Similar to previous best
## Run 173 stress 0.01626622 
## ... Procrustes: rmse 0.0003384049  max resid 0.001017294 
## ... Similar to previous best
## Run 174 stress 0.01626596 
## ... Procrustes: rmse 0.000209713  max resid 0.0006297119 
## ... Similar to previous best
## Run 175 stress 0.01626633 
## ... Procrustes: rmse 0.0003922645  max resid 0.001180471 
## ... Similar to previous best
## Run 176 stress 0.01626614 
## ... Procrustes: rmse 0.0003122212  max resid 0.0009382533 
## ... Similar to previous best
## Run 177 stress 0.01626613 
## ... Procrustes: rmse 0.000253228  max resid 0.0007563782 
## ... Similar to previous best
## Run 178 stress 0.01626601 
## ... Procrustes: rmse 0.000188275  max resid 0.0005617486 
## ... Similar to previous best
## Run 179 stress 0.0162662 
## ... Procrustes: rmse 0.0002828084  max resid 0.0008450511 
## ... Similar to previous best
## Run 180 stress 0.01626612 
## ... Procrustes: rmse 0.0002415557  max resid 0.0007212432 
## ... Similar to previous best
## Run 181 stress 0.01626609 
## ... Procrustes: rmse 0.0002338081  max resid 0.0006983814 
## ... Similar to previous best
## Run 182 stress 0.01626606 
## ... Procrustes: rmse 0.0002738753  max resid 0.0008222625 
## ... Similar to previous best
## Run 183 stress 0.016266 
## ... Procrustes: rmse 0.0001826925  max resid 0.0005450192 
## ... Similar to previous best
## Run 184 stress 0.01626627 
## ... Procrustes: rmse 0.0003699478  max resid 0.001113055 
## ... Similar to previous best
## Run 185 stress 0.01626615 
## ... Procrustes: rmse 0.0003138643  max resid 0.0009432033 
## ... Similar to previous best
## Run 186 stress 0.01626609 
## ... Procrustes: rmse 0.0002899797  max resid 0.0008708254 
## ... Similar to previous best
## Run 187 stress 0.01626607 
## ... Procrustes: rmse 0.0002761246  max resid 0.0008290283 
## ... Similar to previous best
## Run 188 stress 0.01626627 
## ... Procrustes: rmse 0.0003545209  max resid 0.001065913 
## ... Similar to previous best
## Run 189 stress 0.01626619 
## ... Procrustes: rmse 0.0003375185  max resid 0.001014899 
## ... Similar to previous best
## Run 190 stress 0.01626634 
## ... Procrustes: rmse 0.0003908885  max resid 0.001176288 
## ... Similar to previous best
## Run 191 stress 0.0162662 
## ... Procrustes: rmse 0.0002749056  max resid 0.0008224058 
## ... Similar to previous best
## Run 192 stress 0.01626603 
## ... Procrustes: rmse 0.0002015124  max resid 0.0006014391 
## ... Similar to previous best
## Run 193 stress 0.01626604 
## ... Procrustes: rmse 0.000256723  max resid 0.0007706844 
## ... Similar to previous best
## Run 194 stress 0.01626612 
## ... Procrustes: rmse 0.0002263978  max resid 0.0006751673 
## ... Similar to previous best
## Run 195 stress 0.0162661 
## ... Procrustes: rmse 0.000232058  max resid 0.000692717 
## ... Similar to previous best
## Run 196 stress 0.0162662 
## ... Procrustes: rmse 0.0002753493  max resid 0.0008223917 
## ... Similar to previous best
## Run 197 stress 0.01626597 
## ... Procrustes: rmse 0.0002163134  max resid 0.0006495201 
## ... Similar to previous best
## Run 198 stress 0.01626634 
## ... Procrustes: rmse 0.0003879223  max resid 0.00116724 
## ... Similar to previous best
## Run 199 stress 0.0162662 
## ... Procrustes: rmse 0.0003291751  max resid 0.0009893705 
## ... Similar to previous best
## Run 200 stress 0.01626621 
## ... Procrustes: rmse 0.0003439429  max resid 0.001034342 
## ... Similar to previous best
## Run 201 stress 0.01626614 
## ... Procrustes: rmse 0.0003110448  max resid 0.0009346923 
## ... Similar to previous best
## Run 202 stress 0.0162663 
## ... Procrustes: rmse 0.0003814948  max resid 0.001148025 
## ... Similar to previous best
## Run 203 stress 0.01626621 
## ... Procrustes: rmse 0.0002739018  max resid 0.0008180855 
## ... Similar to previous best
## Run 204 stress 0.016266 
## ... Procrustes: rmse 0.0002312803  max resid 0.0006942717 
## ... Similar to previous best
## Run 205 stress 0.01626601 
## ... Procrustes: rmse 0.0002424219  max resid 0.0007277719 
## ... Similar to previous best
## Run 206 stress 0.01626608 
## ... Procrustes: rmse 0.0002280081  max resid 0.0006808265 
## ... Similar to previous best
## Run 207 stress 0.01626604 
## ... Procrustes: rmse 0.0002624447  max resid 0.0007879048 
## ... Similar to previous best
## Run 208 stress 0.01626608 
## ... Procrustes: rmse 0.0002843227  max resid 0.0008537608 
## ... Similar to previous best
## Run 209 stress 0.01626596 
## ... Procrustes: rmse 0.0002127731  max resid 0.0006389029 
## ... Similar to previous best
## Run 210 stress 0.01626613 
## ... Procrustes: rmse 0.0002962404  max resid 0.0008896021 
## ... Similar to previous best
## Run 211 stress 0.01626598 
## ... Procrustes: rmse 0.0002228412  max resid 0.000669023 
## ... Similar to previous best
## Run 212 stress 0.01626618 
## ... Procrustes: rmse 0.0003314395  max resid 0.0009964895 
## ... Similar to previous best
## Run 213 stress 0.01626624 
## ... Procrustes: rmse 0.000346022  max resid 0.001040379 
## ... Similar to previous best
## Run 214 stress 0.01626598 
## ... Procrustes: rmse 0.0002225158  max resid 0.0006679888 
## ... Similar to previous best
## Run 215 stress 0.01626594 
## ... Procrustes: rmse 0.0001466732  max resid 0.0004370528 
## ... Similar to previous best
## Run 216 stress 0.01626627 
## ... Procrustes: rmse 0.0003598345  max resid 0.001082211 
## ... Similar to previous best
## Run 217 stress 0.01626609 
## ... Procrustes: rmse 0.0002873822  max resid 0.0008629972 
## ... Similar to previous best
## Run 218 stress 0.01626605 
## ... Procrustes: rmse 0.0002636977  max resid 0.0007915259 
## ... Similar to previous best
## Run 219 stress 0.3789043 
## Run 220 stress 0.01626605 
## ... Procrustes: rmse 0.0002673363  max resid 0.0008026036 
## ... Similar to previous best
## Run 221 stress 0.3570272 
## Run 222 stress 0.01626604 
## ... Procrustes: rmse 0.000263525  max resid 0.0007911245 
## ... Similar to previous best
## Run 223 stress 0.01626623 
## ... Procrustes: rmse 0.000352305  max resid 0.00105967 
## ... Similar to previous best
## Run 224 stress 0.01626613 
## ... Procrustes: rmse 0.0002519248  max resid 0.0007524568 
## ... Similar to previous best
## Run 225 stress 0.01626597 
## ... Procrustes: rmse 0.0002152668  max resid 0.0006446474 
## ... Similar to previous best
## Run 226 stress 0.01626623 
## ... Procrustes: rmse 0.0003412641  max resid 0.00102595 
## ... Similar to previous best
## Run 227 stress 0.01626607 
## ... Procrustes: rmse 0.0002721434  max resid 0.0008168888 
## ... Similar to previous best
## Run 228 stress 0.01626597 
## ... Procrustes: rmse 0.0002187254  max resid 0.0006566787 
## ... Similar to previous best
## Run 229 stress 0.01626622 
## ... Procrustes: rmse 0.0003413405  max resid 0.001026271 
## ... Similar to previous best
## Run 230 stress 0.01626595 
## ... Procrustes: rmse 0.0002040686  max resid 0.00061283 
## ... Similar to previous best
## Run 231 stress 0.0162659 
## ... Procrustes: rmse 0.0001660045  max resid 0.0004987893 
## ... Similar to previous best
## Run 232 stress 0.01626605 
## ... Procrustes: rmse 0.0002462565  max resid 0.0007387097 
## ... Similar to previous best
## Run 233 stress 0.01626619 
## ... Procrustes: rmse 0.0002786225  max resid 0.0008325189 
## ... Similar to previous best
## Run 234 stress 0.01626624 
## ... Procrustes: rmse 0.0003535396  max resid 0.001063278 
## ... Similar to previous best
## Run 235 stress 0.01626629 
## ... Procrustes: rmse 0.0003805462  max resid 0.001145155 
## ... Similar to previous best
## Run 236 stress 0.01626628 
## ... Procrustes: rmse 0.0003658977  max resid 0.00110062 
## ... Similar to previous best
## Run 237 stress 0.01626602 
## ... Procrustes: rmse 0.0002487809  max resid 0.0007468569 
## ... Similar to previous best
## Run 238 stress 0.01626583 
## ... New best solution
## ... Procrustes: rmse 4.431519e-05  max resid 0.000132932 
## ... Similar to previous best
## Run 239 stress 0.01626594 
## ... Procrustes: rmse 0.000183747  max resid 0.0005484583 
## ... Similar to previous best
## Run 240 stress 0.01626638 
## ... Procrustes: rmse 0.0003698509  max resid 0.001113799 
## ... Similar to previous best
## Run 241 stress 0.01626607 
## ... Procrustes: rmse 0.0002324915  max resid 0.0006981049 
## ... Similar to previous best
## Run 242 stress 0.01626617 
## ... Procrustes: rmse 0.0003134418  max resid 0.000937035 
## ... Similar to previous best
## Run 243 stress 0.01626614 
## ... Procrustes: rmse 0.0002889485  max resid 0.0008632797 
## ... Similar to previous best
## Run 244 stress 0.016266 
## ... Procrustes: rmse 0.0001971249  max resid 0.0005918645 
## ... Similar to previous best
## Run 245 stress 0.01626633 
## ... Procrustes: rmse 0.0003373544  max resid 0.001015211 
## ... Similar to previous best
## Run 246 stress 0.01626606 
## ... Procrustes: rmse 0.0002259896  max resid 0.0006785918 
## ... Similar to previous best
## Run 247 stress 0.01626614 
## ... Procrustes: rmse 0.0002542372  max resid 0.0007634783 
## ... Similar to previous best
## Run 248 stress 0.01626612 
## ... Procrustes: rmse 0.0002557029  max resid 0.0007682473 
## ... Similar to previous best
## Run 249 stress 0.01626611 
## ... Procrustes: rmse 0.0002888279  max resid 0.0008633424 
## ... Similar to previous best
## Run 250 stress 0.01626608 
## ... Procrustes: rmse 0.0002710708  max resid 0.0008101255 
## ... Similar to previous best
## Run 251 stress 0.01626599 
## ... Procrustes: rmse 0.0001892203  max resid 0.0005681817 
## ... Similar to previous best
## Run 252 stress 0.01626607 
## ... Procrustes: rmse 0.0002351097  max resid 0.0007060626 
## ... Similar to previous best
## Run 253 stress 0.01626615 
## ... Procrustes: rmse 0.0002972271  max resid 0.0008883715 
## ... Similar to previous best
## Run 254 stress 0.016266 
## ... Procrustes: rmse 0.0002256202  max resid 0.0006739509 
## ... Similar to previous best
## Run 255 stress 0.01626606 
## ... Procrustes: rmse 0.0002258559  max resid 0.0006781745 
## ... Similar to previous best
## Run 256 stress 0.372311 
## Run 257 stress 0.01626616 
## ... Procrustes: rmse 0.0002779331  max resid 0.0008356687 
## ... Similar to previous best
## Run 258 stress 0.0162661 
## ... Procrustes: rmse 0.0002824114  max resid 0.0008441194 
## ... Similar to previous best
## Run 259 stress 0.01626615 
## ... Procrustes: rmse 0.0003079057  max resid 0.0009205328 
## ... Similar to previous best
## Run 260 stress 0.01626611 
## ... Procrustes: rmse 0.000287182  max resid 0.0008584336 
## ... Similar to previous best
## Run 261 stress 0.01626619 
## ... Procrustes: rmse 0.0003163834  max resid 0.0009457647 
## ... Similar to previous best
## Run 262 stress 0.01626615 
## ... Procrustes: rmse 0.0002923203  max resid 0.0008733138 
## ... Similar to previous best
## Run 263 stress 0.01626639 
## ... Procrustes: rmse 0.0003663183  max resid 0.001102938 
## ... Similar to previous best
## Run 264 stress 0.01626597 
## ... Procrustes: rmse 0.0001707335  max resid 0.0005126784 
## ... Similar to previous best
## Run 265 stress 0.01626591 
## ... Procrustes: rmse 0.000160144  max resid 0.000477716 
## ... Similar to previous best
## Run 266 stress 0.01626601 
## ... Procrustes: rmse 0.0002027455  max resid 0.0006087515 
## ... Similar to previous best
## Run 267 stress 0.01626611 
## ... Procrustes: rmse 0.0002809385  max resid 0.0008396978 
## ... Similar to previous best
## Run 268 stress 0.01626601 
## ... Procrustes: rmse 0.0001973279  max resid 0.0005923609 
## ... Similar to previous best
## Run 269 stress 0.0162661 
## ... Procrustes: rmse 0.0002509096  max resid 0.0007537754 
## ... Similar to previous best
## Run 270 stress 0.01626622 
## ... Procrustes: rmse 0.0002956904  max resid 0.0008892311 
## ... Similar to previous best
## Run 271 stress 0.01626617 
## ... Procrustes: rmse 0.0003170907  max resid 0.0009480508 
## ... Similar to previous best
## Run 272 stress 0.01626622 
## ... Procrustes: rmse 0.0003043745  max resid 0.0009156871 
## ... Similar to previous best
## Run 273 stress 0.01626596 
## ... Procrustes: rmse 0.0001703872  max resid 0.0005117012 
## ... Similar to previous best
## Run 274 stress 0.01626614 
## ... Procrustes: rmse 0.0002664898  max resid 0.000801005 
## ... Similar to previous best
## Run 275 stress 0.01626608 
## ... Procrustes: rmse 0.0002719971  max resid 0.0008129391 
## ... Similar to previous best
## Run 276 stress 0.01626634 
## ... Procrustes: rmse 0.0003463956  max resid 0.001042677 
## ... Similar to previous best
## Run 277 stress 0.01626594 
## ... Procrustes: rmse 0.0001889268  max resid 0.0005639851 
## ... Similar to previous best
## Run 278 stress 0.01626607 
## ... Procrustes: rmse 0.0002340297  max resid 0.0007027827 
## ... Similar to previous best
## Run 279 stress 0.01626616 
## ... Procrustes: rmse 0.0002789142  max resid 0.0008386496 
## ... Similar to previous best
## Run 280 stress 0.01626609 
## ... Procrustes: rmse 0.0002339247  max resid 0.0007022279 
## ... Similar to previous best
## Run 281 stress 0.01626612 
## ... Procrustes: rmse 0.0002941251  max resid 0.0008792352 
## ... Similar to previous best
## Run 282 stress 0.01626618 
## ... Procrustes: rmse 0.0002792467  max resid 0.0008394348 
## ... Similar to previous best
## Run 283 stress 0.01626617 
## ... Procrustes: rmse 0.0002718711  max resid 0.0008169474 
## ... Similar to previous best
## Run 284 stress 0.01626619 
## ... Procrustes: rmse 0.0002806804  max resid 0.0008437209 
## ... Similar to previous best
## Run 285 stress 0.01626613 
## ... Procrustes: rmse 0.0002656861  max resid 0.0007985692 
## ... Similar to previous best
## Run 286 stress 0.01626616 
## ... Procrustes: rmse 0.0002784913  max resid 0.0008373575 
## ... Similar to previous best
## Run 287 stress 0.016266 
## ... Procrustes: rmse 0.0002313495  max resid 0.0006911085 
## ... Similar to previous best
## Run 288 stress 0.01626633 
## ... Procrustes: rmse 0.0003390486  max resid 0.001020304 
## ... Similar to previous best
## Run 289 stress 0.01626634 
## ... Procrustes: rmse 0.0003552788  max resid 0.001069727 
## ... Similar to previous best
## Run 290 stress 0.01626594 
## ... Procrustes: rmse 0.0001896627  max resid 0.0005661462 
## ... Similar to previous best
## Run 291 stress 0.01626617 
## ... Procrustes: rmse 0.0002827108  max resid 0.0008501331 
## ... Similar to previous best
## Run 292 stress 0.01626628 
## ... Procrustes: rmse 0.0003302733  max resid 0.0009941196 
## ... Similar to previous best
## Run 293 stress 0.01626605 
## ... Procrustes: rmse 0.0002247148  max resid 0.0006747677 
## ... Similar to previous best
## Run 294 stress 0.01626588 
## ... Procrustes: rmse 0.0001297425  max resid 0.0003878608 
## ... Similar to previous best
## Run 295 stress 0.01626607 
## ... Procrustes: rmse 0.0002673236  max resid 0.0007989149 
## ... Similar to previous best
## Run 296 stress 0.01626622 
## ... Procrustes: rmse 0.0002938579  max resid 0.0008836337 
## ... Similar to previous best
## Run 297 stress 0.0162661 
## ... Procrustes: rmse 0.0002856056  max resid 0.0008537093 
## ... Similar to previous best
## Run 298 stress 0.01626629 
## ... Procrustes: rmse 0.0003187802  max resid 0.0009589531 
## ... Similar to previous best
## Run 299 stress 0.01626631 
## ... Procrustes: rmse 0.0003381979  max resid 0.001018023 
## ... Similar to previous best
## Run 300 stress 0.01626588 
## ... Procrustes: rmse 9.572857e-05  max resid 0.0002879943 
## ... Similar to previous best
## Run 301 stress 0.01626608 
## ... Procrustes: rmse 0.0002730758  max resid 0.0008161386 
## ... Similar to previous best
## Run 302 stress 0.01626596 
## ... Procrustes: rmse 0.0001695998  max resid 0.0005093494 
## ... Similar to previous best
## Run 303 stress 0.01626611 
## ... Procrustes: rmse 0.0002441316  max resid 0.0007329808 
## ... Similar to previous best
## Run 304 stress 0.01626609 
## ... Procrustes: rmse 0.0002401318  max resid 0.0007210857 
## ... Similar to previous best
## Run 305 stress 0.01626605 
## ... Procrustes: rmse 0.0002222902  max resid 0.000667463 
## ... Similar to previous best
## Run 306 stress 0.01626622 
## ... Procrustes: rmse 0.0003064159  max resid 0.0009219267 
## ... Similar to previous best
## Run 307 stress 0.01626604 
## ... Procrustes: rmse 0.0002112385  max resid 0.000634083 
## ... Similar to previous best
## Run 308 stress 0.01626612 
## ... Procrustes: rmse 0.0002863901  max resid 0.000855799 
## ... Similar to previous best
## Run 309 stress 0.01626604 
## ... Procrustes: rmse 0.0002160636  max resid 0.000648574 
## ... Similar to previous best
## Run 310 stress 0.01626611 
## ... Procrustes: rmse 0.0002891957  max resid 0.0008644601 
## ... Similar to previous best
## Run 311 stress 0.01626617 
## ... Procrustes: rmse 0.0002820729  max resid 0.0008482157 
## ... Similar to previous best
## Run 312 stress 0.01626588 
## ... Procrustes: rmse 0.0001025922  max resid 0.0003084446 
## ... Similar to previous best
## Run 313 stress 0.01626601 
## ... Procrustes: rmse 0.000198962  max resid 0.0005973819 
## ... Similar to previous best
## Run 314 stress 0.01626591 
## ... Procrustes: rmse 0.0001270327  max resid 0.0003817735 
## ... Similar to previous best
## Run 315 stress 0.01626639 
## ... Procrustes: rmse 0.000354335  max resid 0.001066345 
## ... Similar to previous best
## Run 316 stress 0.01626621 
## ... Procrustes: rmse 0.000320478  max resid 0.0009579496 
## ... Similar to previous best
## Run 317 stress 0.01626622 
## ... Procrustes: rmse 0.0002932813  max resid 0.0008818568 
## ... Similar to previous best
## Run 318 stress 0.01626633 
## ... Procrustes: rmse 0.0003361943  max resid 0.001011705 
## ... Similar to previous best
## Run 319 stress 0.01626615 
## ... Procrustes: rmse 0.0002748358  max resid 0.000826302 
## ... Similar to previous best
## Run 320 stress 0.01626631 
## ... Procrustes: rmse 0.0003348601  max resid 0.001007828 
## ... Similar to previous best
## Run 321 stress 0.01626625 
## ... Procrustes: rmse 0.0003164067  max resid 0.0009521458 
## ... Similar to previous best
## Run 322 stress 0.01626599 
## ... Procrustes: rmse 0.0001869927  max resid 0.0005614735 
## ... Similar to previous best
## Run 323 stress 0.01626614 
## ... Procrustes: rmse 0.0003041923  max resid 0.0009093863 
## ... Similar to previous best
## Run 324 stress 0.0162662 
## ... Procrustes: rmse 0.0002935808  max resid 0.0008830702 
## ... Similar to previous best
## Run 325 stress 0.01626604 
## ... Procrustes: rmse 0.0002495171  max resid 0.0007455344 
## ... Similar to previous best
## Run 326 stress 0.01626595 
## ... Procrustes: rmse 0.000195256  max resid 0.000582883 
## ... Similar to previous best
## Run 327 stress 0.01626609 
## ... Procrustes: rmse 0.0002429314  max resid 0.0007296282 
## ... Similar to previous best
## Run 328 stress 0.01626624 
## ... Procrustes: rmse 0.000311654  max resid 0.000937771 
## ... Similar to previous best
## Run 329 stress 0.01626605 
## ... Procrustes: rmse 0.0002578487  max resid 0.0007704883 
## ... Similar to previous best
## Run 330 stress 0.01626587 
## ... Procrustes: rmse 8.822099e-05  max resid 0.0002654557 
## ... Similar to previous best
## Run 331 stress 0.01626617 
## ... Procrustes: rmse 0.0002840945  max resid 0.0008543427 
## ... Similar to previous best
## Run 332 stress 0.01626608 
## ... Procrustes: rmse 0.0002708449  max resid 0.0008093813 
## ... Similar to previous best
## Run 333 stress 0.01626597 
## ... Procrustes: rmse 0.0001691662  max resid 0.0005078906 
## ... Similar to previous best
## Run 334 stress 0.01626587 
## ... Procrustes: rmse 0.0001127924  max resid 0.0003377037 
## ... Similar to previous best
## Run 335 stress 0.01626608 
## ... Procrustes: rmse 0.000237041  max resid 0.0007117484 
## ... Similar to previous best
## Run 336 stress 0.01626598 
## ... Procrustes: rmse 0.0001803121  max resid 0.0005414736 
## ... Similar to previous best
## Run 337 stress 0.01626606 
## ... Procrustes: rmse 0.0002169438  max resid 0.0006510564 
## ... Similar to previous best
## Run 338 stress 0.01626627 
## ... Procrustes: rmse 0.0003116964  max resid 0.0009375879 
## ... Similar to previous best
## Run 339 stress 0.01626627 
## ... Procrustes: rmse 0.0003250325  max resid 0.0009782603 
## ... Similar to previous best
## Run 340 stress 0.01626595 
## ... Procrustes: rmse 0.0001939926  max resid 0.0005790845 
## ... Similar to previous best
## Run 341 stress 0.01626612 
## ... Procrustes: rmse 0.0002505279  max resid 0.0007522991 
## ... Similar to previous best
## Run 342 stress 0.01626609 
## ... Procrustes: rmse 0.0002393216  max resid 0.0007185736 
## ... Similar to previous best
## Run 343 stress 0.01626605 
## ... Procrustes: rmse 0.00020836  max resid 0.0006251391 
## ... Similar to previous best
## Run 344 stress 0.01626629 
## ... Procrustes: rmse 0.0003262716  max resid 0.0009817421 
## ... Similar to previous best
## Run 345 stress 0.0162661 
## ... Procrustes: rmse 0.0002815542  max resid 0.0008415577 
## ... Similar to previous best
## Run 346 stress 0.01626601 
## ... Procrustes: rmse 0.0001998216  max resid 0.0005999423 
## ... Similar to previous best
## Run 347 stress 0.01626595 
## ... Procrustes: rmse 0.0001961059  max resid 0.0005855214 
## ... Similar to previous best
## Run 348 stress 0.01626621 
## ... Procrustes: rmse 0.0003018193  max resid 0.0009080104 
## ... Similar to previous best
## Run 349 stress 0.01626599 
## ... Procrustes: rmse 0.0002243693  max resid 0.0006701999 
## ... Similar to previous best
## Run 350 stress 0.01626602 
## ... Procrustes: rmse 0.0002043024  max resid 0.0006134178 
## ... Similar to previous best
## Run 351 stress 0.01626613 
## ... Procrustes: rmse 0.0002613114  max resid 0.0007852959 
## ... Similar to previous best
## Run 352 stress 0.01626599 
## ... Procrustes: rmse 0.0001849522  max resid 0.0005553576 
## ... Similar to previous best
## Run 353 stress 0.01626597 
## ... Procrustes: rmse 0.0002025417  max resid 0.0006046031 
## ... Similar to previous best
## Run 354 stress 0.01626639 
## ... Procrustes: rmse 0.0003592399  max resid 0.001081314 
## ... Similar to previous best
## Run 355 stress 0.01626637 
## ... Procrustes: rmse 0.0003543425  max resid 0.001066603 
## ... Similar to previous best
## Run 356 stress 0.01626612 
## ... Procrustes: rmse 0.0002870946  max resid 0.000858007 
## ... Similar to previous best
## Run 357 stress 0.01626616 
## ... Procrustes: rmse 0.0002701111  max resid 0.0008117816 
## ... Similar to previous best
## Run 358 stress 0.01626604 
## ... Procrustes: rmse 0.0002528999  max resid 0.0007556743 
## ... Similar to previous best
## Run 359 stress 0.01626615 
## ... Procrustes: rmse 0.0002929112  max resid 0.0008752796 
## ... Similar to previous best
## Run 360 stress 0.01626615 
## ... Procrustes: rmse 0.0002993699  max resid 0.0008947496 
## ... Similar to previous best
## Run 361 stress 0.016266 
## ... Procrustes: rmse 0.0001918005  max resid 0.0005759214 
## ... Similar to previous best
## Run 362 stress 0.01626608 
## ... Procrustes: rmse 0.0002706385  max resid 0.0008088161 
## ... Similar to previous best
## Run 363 stress 0.01626594 
## ... Procrustes: rmse 0.0001551497  max resid 0.0004660477 
## ... Similar to previous best
## Run 364 stress 0.01626603 
## ... Procrustes: rmse 0.0002094868  max resid 0.0006289854 
## ... Similar to previous best
## Run 365 stress 0.01626623 
## ... Procrustes: rmse 0.0003078737  max resid 0.0009263239 
## ... Similar to previous best
## Run 366 stress 0.01626636 
## ... Procrustes: rmse 0.0003574325  max resid 0.001076068 
## ... Similar to previous best
## Run 367 stress 0.01626585 
## ... Procrustes: rmse 5.98743e-05  max resid 0.0001803665 
## ... Similar to previous best
## Run 368 stress 0.01626593 
## ... Procrustes: rmse 0.0001744273  max resid 0.0005204405 
## ... Similar to previous best
## Run 369 stress 0.016266 
## ... Procrustes: rmse 0.000227022  max resid 0.0006781506 
## ... Similar to previous best
## Run 370 stress 0.01626623 
## ... Procrustes: rmse 0.0003256711  max resid 0.000973218 
## ... Similar to previous best
## Run 371 stress 0.01626597 
## ... Procrustes: rmse 0.0002028064  max resid 0.0006054585 
## ... Similar to previous best
## Run 372 stress 0.0162661 
## ... Procrustes: rmse 0.0002827467  max resid 0.0008451363 
## ... Similar to previous best
## Run 373 stress 0.01626585 
## ... Procrustes: rmse 8.676877e-05  max resid 0.0002577358 
## ... Similar to previous best
## Run 374 stress 0.01626632 
## ... Procrustes: rmse 0.0003403124  max resid 0.001024287 
## ... Similar to previous best
## Run 375 stress 0.01626606 
## ... Procrustes: rmse 0.0002630175  max resid 0.00078598 
## ... Similar to previous best
## Run 376 stress 0.3679686 
## Run 377 stress 0.0162661 
## ... Procrustes: rmse 0.0002468333  max resid 0.0007413392 
## ... Similar to previous best
## Run 378 stress 0.01626612 
## ... Procrustes: rmse 0.0002565383  max resid 0.0007708478 
## ... Similar to previous best
## Run 379 stress 0.01626613 
## ... Procrustes: rmse 0.00029959  max resid 0.0008956084 
## ... Similar to previous best
## Run 380 stress 0.01626622 
## ... Procrustes: rmse 0.0003030332  max resid 0.000911632 
## ... Similar to previous best
## Run 381 stress 0.01626597 
## ... Procrustes: rmse 0.0002046773  max resid 0.0006133038 
## ... Similar to previous best
## Run 382 stress 0.01626621 
## ... Procrustes: rmse 0.0003018103  max resid 0.000907976 
## ... Similar to previous best
## Run 383 stress 0.01626616 
## ... Procrustes: rmse 0.0002764402  max resid 0.0008311093 
## ... Similar to previous best
## Run 384 stress 0.01626595 
## ... Procrustes: rmse 0.000159024  max resid 0.0004776751 
## ... Similar to previous best
## Run 385 stress 0.01626617 
## ... Procrustes: rmse 0.0002759707  max resid 0.000829552 
## ... Similar to previous best
## Run 386 stress 0.01626599 
## ... Procrustes: rmse 0.0001874609  max resid 0.0005628722 
## ... Similar to previous best
## Run 387 stress 0.01626624 
## ... Procrustes: rmse 0.0002920494  max resid 0.0008778456 
## ... Similar to previous best
## Run 388 stress 0.01626625 
## ... Procrustes: rmse 0.0003174196  max resid 0.0009552276 
## ... Similar to previous best
## Run 389 stress 0.01626623 
## ... Procrustes: rmse 0.0003059171  max resid 0.0009203282 
## ... Similar to previous best
## Run 390 stress 0.01626613 
## ... Procrustes: rmse 0.0002977997  max resid 0.0008901582 
## ... Similar to previous best
## Run 391 stress 0.01626613 
## ... Procrustes: rmse 0.0002984303  max resid 0.0008921092 
## ... Similar to previous best
## Run 392 stress 0.01626632 
## ... Procrustes: rmse 0.0003455245  max resid 0.001040247 
## ... Similar to previous best
## Run 393 stress 0.01626603 
## ... Procrustes: rmse 0.0002443631  max resid 0.000730119 
## ... Similar to previous best
## Run 394 stress 0.01626616 
## ... Procrustes: rmse 0.0002784956  max resid 0.000837385 
## ... Similar to previous best
## Run 395 stress 0.01626591 
## ... Procrustes: rmse 0.000123718  max resid 0.0003719267 
## ... Similar to previous best
## Run 396 stress 0.01626616 
## ... Procrustes: rmse 0.0002685822  max resid 0.0008070824 
## ... Similar to previous best
## Run 397 stress 0.01626594 
## ... Procrustes: rmse 0.0001908959  max resid 0.0005698842 
## ... Similar to previous best
## Run 398 stress 0.01626632 
## ... Procrustes: rmse 0.0003345371  max resid 0.001006721 
## ... Similar to previous best
## Run 399 stress 0.01626597 
## ... Procrustes: rmse 0.0001678293  max resid 0.0005038029 
## ... Similar to previous best
## Run 400 stress 0.01626617 
## ... Procrustes: rmse 0.0003169978  max resid 0.0009477734 
## ... Similar to previous best
## Run 401 stress 0.01626609 
## ... Procrustes: rmse 0.0002411063  max resid 0.0007240507 
## ... Similar to previous best
## Run 402 stress 0.01626611 
## ... Procrustes: rmse 0.0002875421  max resid 0.0008595008 
## ... Similar to previous best
## Run 403 stress 0.01626629 
## ... Procrustes: rmse 0.0003234149  max resid 0.0009731276 
## ... Similar to previous best
## Run 404 stress 0.01626604 
## ... Procrustes: rmse 0.0002093418  max resid 0.0006283139 
## ... Similar to previous best
## Run 405 stress 0.01626602 
## ... Procrustes: rmse 0.00023765  max resid 0.0007099938 
## ... Similar to previous best
## Run 406 stress 0.01626627 
## ... Procrustes: rmse 0.0003121084  max resid 0.0009388149 
## ... Similar to previous best
## Run 407 stress 0.01626611 
## ... Procrustes: rmse 0.0002787865  max resid 0.000833101 
## ... Similar to previous best
## Run 408 stress 0.0162662 
## ... Procrustes: rmse 0.0002928209  max resid 0.0008806816 
## ... Similar to previous best
## Run 409 stress 0.01626606 
## ... Procrustes: rmse 0.0002284184  max resid 0.0006858923 
## ... Similar to previous best
## Run 410 stress 0.01626584 
## ... Procrustes: rmse 2.731183e-05  max resid 7.853567e-05 
## ... Similar to previous best
## Run 411 stress 0.01626611 
## ... Procrustes: rmse 0.0002489606  max resid 0.0007476699 
## ... Similar to previous best
## Run 412 stress 0.01626631 
## ... Procrustes: rmse 0.000334365  max resid 0.001006306 
## ... Similar to previous best
## Run 413 stress 0.0162662 
## ... Procrustes: rmse 0.0003249704  max resid 0.0009716301 
## ... Similar to previous best
## Run 414 stress 0.016266 
## ... Procrustes: rmse 0.0002212795  max resid 0.0006606606 
## ... Similar to previous best
## Run 415 stress 0.01626601 
## ... Procrustes: rmse 0.0002005768  max resid 0.0006022426 
## ... Similar to previous best
## Run 416 stress 0.01626621 
## ... Procrustes: rmse 0.0002891242  max resid 0.0008692422 
## ... Similar to previous best
## Run 417 stress 0.01626604 
## ... Procrustes: rmse 0.0002540581  max resid 0.00075924 
## ... Similar to previous best
## Run 418 stress 0.01626617 
## ... Procrustes: rmse 0.00028262  max resid 0.0008498752 
## ... Similar to previous best
## Run 419 stress 0.01626612 
## ... Procrustes: rmse 0.0002570817  max resid 0.0007724954 
## ... Similar to previous best
## Run 420 stress 0.01626604 
## ... Procrustes: rmse 0.0002179549  max resid 0.0006518125 
## ... Similar to previous best
## Run 421 stress 0.01626612 
## ... Procrustes: rmse 0.0002552236  max resid 0.000766804 
## ... Similar to previous best
## Run 422 stress 0.016266 
## ... Procrustes: rmse 0.000230478  max resid 0.0006887144 
## ... Similar to previous best
## Run 423 stress 0.01626612 
## ... Procrustes: rmse 0.0002542089  max resid 0.0007635724 
## ... Similar to previous best
## Run 424 stress 0.01626607 
## ... Procrustes: rmse 0.0002676105  max resid 0.0007997918 
## ... Similar to previous best
## Run 425 stress 0.0162663 
## ... Procrustes: rmse 0.00033736  max resid 0.001015553 
## ... Similar to previous best
## Run 426 stress 0.01626593 
## ... Procrustes: rmse 0.0001430835  max resid 0.0004299026 
## ... Similar to previous best
## Run 427 stress 0.01626593 
## ... Procrustes: rmse 0.0001456396  max resid 0.0004375978 
## ... Similar to previous best
## Run 428 stress 0.01626617 
## ... Procrustes: rmse 0.0003148097  max resid 0.000941204 
## ... Similar to previous best
## Run 429 stress 0.0162661 
## ... Procrustes: rmse 0.0002410001  max resid 0.0007234148 
## ... Similar to previous best
## Run 430 stress 0.01626626 
## ... Procrustes: rmse 0.0003201621  max resid 0.0009635235 
## ... Similar to previous best
## Run 431 stress 0.01626599 
## ... Procrustes: rmse 0.0001900723  max resid 0.0005707577 
## ... Similar to previous best
## Run 432 stress 0.01626621 
## ... Procrustes: rmse 0.0002984754  max resid 0.0008978871 
## ... Similar to previous best
## Run 433 stress 0.01626596 
## ... Procrustes: rmse 0.0001661594  max resid 0.0004990708 
## ... Similar to previous best
## Run 434 stress 0.01626598 
## ... Procrustes: rmse 0.0002123889  max resid 0.0006342649 
## ... Similar to previous best
## Run 435 stress 0.01626625 
## ... Procrustes: rmse 0.0003176553  max resid 0.0009559403 
## ... Similar to previous best
## Run 436 stress 0.01626606 
## ... Procrustes: rmse 0.0002308853  max resid 0.0006933135 
## ... Similar to previous best
## Run 437 stress 0.01626602 
## ... Procrustes: rmse 0.0002427053  max resid 0.000725109 
## ... Similar to previous best
## Run 438 stress 0.01626599 
## ... Procrustes: rmse 0.0002214415  max resid 0.0006614209 
## ... Similar to previous best
## Run 439 stress 0.01626602 
## ... Procrustes: rmse 0.0002079193  max resid 0.0006242794 
## ... Similar to previous best
## Run 440 stress 0.01626595 
## ... Procrustes: rmse 0.0001933867  max resid 0.0005773456 
## ... Similar to previous best
## Run 441 stress 0.01626632 
## ... Procrustes: rmse 0.0003427509  max resid 0.00103181 
## ... Similar to previous best
## Run 442 stress 0.01626599 
## ... Procrustes: rmse 0.0002242889  max resid 0.0006699744 
## ... Similar to previous best
## Run 443 stress 0.0162662 
## ... Procrustes: rmse 0.0002971105  max resid 0.0008937576 
## ... Similar to previous best
## Run 444 stress 0.01626615 
## ... Procrustes: rmse 0.0002742182  max resid 0.0008244273 
## ... Similar to previous best
## Run 445 stress 0.01626604 
## ... Procrustes: rmse 0.0002200384  max resid 0.0006606526 
## ... Similar to previous best
## Run 446 stress 0.0162662 
## ... Procrustes: rmse 0.0002838351  max resid 0.000853253 
## ... Similar to previous best
## Run 447 stress 0.0162661 
## ... Procrustes: rmse 0.0002513654  max resid 0.0007551631 
## ... Similar to previous best
## Run 448 stress 0.01626607 
## ... Procrustes: rmse 0.000232473  max resid 0.0006981058 
## ... Similar to previous best
## Run 449 stress 0.01626623 
## ... Procrustes: rmse 0.0003285232  max resid 0.0009820132 
## ... Similar to previous best
## Run 450 stress 0.01626623 
## ... Procrustes: rmse 0.0003046188  max resid 0.0009163644 
## ... Similar to previous best
## Run 451 stress 0.01626606 
## ... Procrustes: rmse 0.0002265925  max resid 0.0006803748 
## ... Similar to previous best
## Run 452 stress 0.01626606 
## ... Procrustes: rmse 0.0002626076  max resid 0.0007847467 
## ... Similar to previous best
## Run 453 stress 0.01626613 
## ... Procrustes: rmse 0.000260336  max resid 0.0007822237 
## ... Similar to previous best
## Run 454 stress 0.01626622 
## ... Procrustes: rmse 0.0003025136  max resid 0.0009100393 
## ... Similar to previous best
## Run 455 stress 0.01626607 
## ... Procrustes: rmse 0.0002278961  max resid 0.0006840628 
## ... Similar to previous best
## Run 456 stress 0.01626603 
## ... Procrustes: rmse 0.0002094628  max resid 0.0006289149 
## ... Similar to previous best
## Run 457 stress 0.01626605 
## ... Procrustes: rmse 0.0002569668  max resid 0.000767512 
## ... Similar to previous best
## Run 458 stress 0.01626624 
## ... Procrustes: rmse 0.0003061292  max resid 0.0009207981 
## ... Similar to previous best
## Run 459 stress 0.01626613 
## ... Procrustes: rmse 0.0002579341  max resid 0.0007749597 
## ... Similar to previous best
## Run 460 stress 0.016266 
## ... Procrustes: rmse 0.0001910598  max resid 0.0005737068 
## ... Similar to previous best
## Run 461 stress 0.01626653 
## ... Procrustes: rmse 0.0004157448  max resid 0.001252188 
## ... Similar to previous best
## Run 462 stress 0.01626609 
## ... Procrustes: rmse 0.0002400749  max resid 0.000720921 
## ... Similar to previous best
## Run 463 stress 0.01626598 
## ... Procrustes: rmse 0.0002160589  max resid 0.00064525 
## ... Similar to previous best
## Run 464 stress 0.01626595 
## ... Procrustes: rmse 0.0001969945  max resid 0.0005881469 
## ... Similar to previous best
## Run 465 stress 0.01626589 
## ... Procrustes: rmse 0.0001100467  max resid 0.0003309038 
## ... Similar to previous best
## Run 466 stress 0.01626621 
## ... Procrustes: rmse 0.0003208548  max resid 0.0009588948 
## ... Similar to previous best
## Run 467 stress 0.01626604 
## ... Procrustes: rmse 0.000249796  max resid 0.0007464278 
## ... Similar to previous best
## Run 468 stress 0.01626631 
## ... Procrustes: rmse 0.000323656  max resid 0.0009736123 
## ... Similar to previous best
## Run 469 stress 0.01626597 
## ... Procrustes: rmse 0.0001717155  max resid 0.0005156812 
## ... Similar to previous best
## Run 470 stress 0.01626607 
## ... Procrustes: rmse 0.0002263405  max resid 0.0006795159 
## ... Similar to previous best
## Run 471 stress 0.016266 
## ... Procrustes: rmse 0.0002304989  max resid 0.0006885436 
## ... Similar to previous best
## Run 472 stress 0.01626592 
## ... Procrustes: rmse 0.0001386193  max resid 0.0004165457 
## ... Similar to previous best
## Run 473 stress 0.01626597 
## ... Procrustes: rmse 0.0002123943  max resid 0.0006343194 
## ... Similar to previous best
## Run 474 stress 0.01626612 
## ... Procrustes: rmse 0.0002599631  max resid 0.0007812292 
## ... Similar to previous best
## Run 475 stress 0.01626617 
## ... Procrustes: rmse 0.0002595421  max resid 0.0007792472 
## ... Similar to previous best
## Run 476 stress 0.01626604 
## ... Procrustes: rmse 0.0002531154  max resid 0.0007563295 
## ... Similar to previous best
## Run 477 stress 0.01626606 
## ... Procrustes: rmse 0.0002262679  max resid 0.0006794164 
## ... Similar to previous best
## Run 478 stress 0.01626618 
## ... Procrustes: rmse 0.0003072802  max resid 0.0009182878 
## ... Similar to previous best
## Run 479 stress 0.01626611 
## ... Procrustes: rmse 0.0002478088  max resid 0.0007441482 
## ... Similar to previous best
## Run 480 stress 0.01626624 
## ... Procrustes: rmse 0.0003136341  max resid 0.0009437519 
## ... Similar to previous best
## Run 481 stress 0.01626619 
## ... Procrustes: rmse 0.0002812021  max resid 0.0008453561 
## ... Similar to previous best
## Run 482 stress 0.0162662 
## ... Procrustes: rmse 0.0002951478  max resid 0.0008878064 
## ... Similar to previous best
## Run 483 stress 0.01626597 
## ... Procrustes: rmse 0.0001733953  max resid 0.0005207454 
## ... Similar to previous best
## Run 484 stress 0.01626627 
## ... Procrustes: rmse 0.0003005647  max resid 0.0009034613 
## ... Similar to previous best
## Run 485 stress 0.01626626 
## ... Procrustes: rmse 0.0003209547  max resid 0.0009659113 
## ... Similar to previous best
## Run 486 stress 0.01626611 
## ... Procrustes: rmse 0.0002867895  max resid 0.0008572226 
## ... Similar to previous best
## Run 487 stress 0.01626607 
## ... Procrustes: rmse 0.0002680785  max resid 0.0008011457 
## ... Similar to previous best
## Run 488 stress 0.01626618 
## ... Procrustes: rmse 0.0002664559  max resid 0.0008002631 
## ... Similar to previous best
## Run 489 stress 0.01626603 
## ... Procrustes: rmse 0.0002033868  max resid 0.0006104608 
## ... Similar to previous best
## Run 490 stress 0.01626609 
## ... Procrustes: rmse 0.0002804705  max resid 0.0008383095 
## ... Similar to previous best
## Run 491 stress 0.01626615 
## ... Procrustes: rmse 0.000273602  max resid 0.0008225544 
## ... Similar to previous best
## Run 492 stress 0.016266 
## ... Procrustes: rmse 0.0001965246  max resid 0.0005900827 
## ... Similar to previous best
## Run 493 stress 0.01626629 
## ... Procrustes: rmse 0.000327625  max resid 0.0009859183 
## ... Similar to previous best
## Run 494 stress 0.01626609 
## ... Procrustes: rmse 0.0002789571  max resid 0.0008337824 
## ... Similar to previous best
## Run 495 stress 0.01626613 
## ... Procrustes: rmse 0.0002638958  max resid 0.0007931406 
## ... Similar to previous best
## Run 496 stress 0.01626627 
## ... Procrustes: rmse 0.0003239083  max resid 0.000974859 
## ... Similar to previous best
## Run 497 stress 0.01626614 
## ... Procrustes: rmse 0.0002675563  max resid 0.0008042422 
## ... Similar to previous best
## Run 498 stress 0.01626596 
## ... Procrustes: rmse 0.0001649051  max resid 0.0004952548 
## ... Similar to previous best
## Run 499 stress 0.01626623 
## ... Procrustes: rmse 0.0003009152  max resid 0.0009050703 
## ... Similar to previous best
## Run 500 stress 0.01626601 
## ... Procrustes: rmse 0.0002363134  max resid 0.0007059675 
## ... Similar to previous best
## *** Best solution repeated 261 times
# Mixed and stratified lakes
envbms_NMDS <- metaMDS(envbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.031621 
## Run 1 stress 0.1187658 
## Run 2 stress 0.031621 
## ... New best solution
## ... Procrustes: rmse 1.715717e-05  max resid 3.95926e-05 
## ... Similar to previous best
## Run 3 stress 0.03162101 
## ... Procrustes: rmse 3.746861e-05  max resid 6.945514e-05 
## ... Similar to previous best
## Run 4 stress 0.03162102 
## ... Procrustes: rmse 4.800662e-05  max resid 0.0001131642 
## ... Similar to previous best
## Run 5 stress 0.03162101 
## ... Procrustes: rmse 3.733788e-05  max resid 8.736392e-05 
## ... Similar to previous best
## Run 6 stress 0.03162104 
## ... Procrustes: rmse 6.682194e-05  max resid 0.0001085359 
## ... Similar to previous best
## Run 7 stress 0.03162101 
## ... Procrustes: rmse 3.031957e-05  max resid 7.390382e-05 
## ... Similar to previous best
## Run 8 stress 0.03162103 
## ... Procrustes: rmse 6.281873e-05  max resid 0.0001413046 
## ... Similar to previous best
## Run 9 stress 0.03162101 
## ... Procrustes: rmse 3.214123e-05  max resid 7.268738e-05 
## ... Similar to previous best
## Run 10 stress 0.031621 
## ... Procrustes: rmse 1.386382e-05  max resid 3.41167e-05 
## ... Similar to previous best
## Run 11 stress 0.031621 
## ... Procrustes: rmse 8.209023e-06  max resid 1.798216e-05 
## ... Similar to previous best
## Run 12 stress 0.031621 
## ... Procrustes: rmse 7.768285e-06  max resid 1.663776e-05 
## ... Similar to previous best
## Run 13 stress 0.1187658 
## Run 14 stress 0.1187662 
## Run 15 stress 0.03162103 
## ... Procrustes: rmse 6.317207e-05  max resid 0.0001268166 
## ... Similar to previous best
## Run 16 stress 0.03162102 
## ... Procrustes: rmse 5.360455e-05  max resid 0.0001319372 
## ... Similar to previous best
## Run 17 stress 0.03162101 
## ... Procrustes: rmse 2.505345e-05  max resid 5.098991e-05 
## ... Similar to previous best
## Run 18 stress 0.1191519 
## Run 19 stress 0.031621 
## ... Procrustes: rmse 2.153326e-05  max resid 4.201094e-05 
## ... Similar to previous best
## Run 20 stress 0.03162102 
## ... Procrustes: rmse 5.554792e-05  max resid 0.0001311687 
## ... Similar to previous best
## Run 21 stress 0.031621 
## ... New best solution
## ... Procrustes: rmse 1.573815e-06  max resid 2.92898e-06 
## ... Similar to previous best
## Run 22 stress 0.119152 
## Run 23 stress 0.031621 
## ... Procrustes: rmse 1.366751e-05  max resid 2.088913e-05 
## ... Similar to previous best
## Run 24 stress 0.031621 
## ... Procrustes: rmse 2.011321e-05  max resid 5.062525e-05 
## ... Similar to previous best
## Run 25 stress 0.031621 
## ... Procrustes: rmse 9.49417e-06  max resid 2.434503e-05 
## ... Similar to previous best
## Run 26 stress 0.031621 
## ... Procrustes: rmse 3.833948e-06  max resid 7.711544e-06 
## ... Similar to previous best
## Run 27 stress 0.03162102 
## ... Procrustes: rmse 5.350631e-05  max resid 0.0001235133 
## ... Similar to previous best
## Run 28 stress 0.03162103 
## ... Procrustes: rmse 6.048417e-05  max resid 0.0001186502 
## ... Similar to previous best
## Run 29 stress 0.031621 
## ... Procrustes: rmse 7.241582e-06  max resid 1.429784e-05 
## ... Similar to previous best
## Run 30 stress 0.031621 
## ... Procrustes: rmse 1.740575e-05  max resid 3.532627e-05 
## ... Similar to previous best
## Run 31 stress 0.03162104 
## ... Procrustes: rmse 5.637463e-05  max resid 8.942713e-05 
## ... Similar to previous best
## Run 32 stress 0.031621 
## ... Procrustes: rmse 6.684473e-06  max resid 1.189741e-05 
## ... Similar to previous best
## Run 33 stress 0.031621 
## ... Procrustes: rmse 1.347132e-05  max resid 3.060304e-05 
## ... Similar to previous best
## Run 34 stress 0.031621 
## ... Procrustes: rmse 1.623217e-05  max resid 3.8194e-05 
## ... Similar to previous best
## Run 35 stress 0.031621 
## ... Procrustes: rmse 2.923173e-06  max resid 5.990127e-06 
## ... Similar to previous best
## Run 36 stress 0.03162102 
## ... Procrustes: rmse 4.394799e-05  max resid 8.687809e-05 
## ... Similar to previous best
## Run 37 stress 0.03162101 
## ... Procrustes: rmse 3.065392e-05  max resid 6.505489e-05 
## ... Similar to previous best
## Run 38 stress 0.031621 
## ... Procrustes: rmse 5.917155e-06  max resid 1.482324e-05 
## ... Similar to previous best
## Run 39 stress 0.03162101 
## ... Procrustes: rmse 3.33715e-05  max resid 5.248789e-05 
## ... Similar to previous best
## Run 40 stress 0.031621 
## ... Procrustes: rmse 6.584451e-06  max resid 1.329185e-05 
## ... Similar to previous best
## Run 41 stress 0.031621 
## ... Procrustes: rmse 4.934728e-06  max resid 1.014561e-05 
## ... Similar to previous best
## Run 42 stress 0.031621 
## ... Procrustes: rmse 1.087551e-05  max resid 2.453587e-05 
## ... Similar to previous best
## Run 43 stress 0.031621 
## ... Procrustes: rmse 9.438673e-06  max resid 1.749351e-05 
## ... Similar to previous best
## Run 44 stress 0.031621 
## ... Procrustes: rmse 3.538001e-06  max resid 5.554812e-06 
## ... Similar to previous best
## Run 45 stress 0.031621 
## ... Procrustes: rmse 5.65633e-06  max resid 1.517765e-05 
## ... Similar to previous best
## Run 46 stress 0.03162102 
## ... Procrustes: rmse 4.974728e-05  max resid 9.851207e-05 
## ... Similar to previous best
## Run 47 stress 0.03162103 
## ... Procrustes: rmse 6.00203e-05  max resid 0.0001393186 
## ... Similar to previous best
## Run 48 stress 0.031621 
## ... Procrustes: rmse 2.810997e-05  max resid 6.643832e-05 
## ... Similar to previous best
## Run 49 stress 0.031621 
## ... Procrustes: rmse 2.667217e-05  max resid 6.217701e-05 
## ... Similar to previous best
## Run 50 stress 0.031621 
## ... Procrustes: rmse 8.223069e-06  max resid 1.28457e-05 
## ... Similar to previous best
## Run 51 stress 0.03162101 
## ... Procrustes: rmse 3.027586e-05  max resid 7.304136e-05 
## ... Similar to previous best
## Run 52 stress 0.03162101 
## ... Procrustes: rmse 3.023739e-05  max resid 6.450783e-05 
## ... Similar to previous best
## Run 53 stress 0.031621 
## ... Procrustes: rmse 2.405892e-05  max resid 5.818196e-05 
## ... Similar to previous best
## Run 54 stress 0.031621 
## ... Procrustes: rmse 2.134221e-05  max resid 4.436934e-05 
## ... Similar to previous best
## Run 55 stress 0.031621 
## ... Procrustes: rmse 1.475371e-05  max resid 3.436074e-05 
## ... Similar to previous best
## Run 56 stress 0.03162101 
## ... Procrustes: rmse 2.874103e-05  max resid 6.592731e-05 
## ... Similar to previous best
## Run 57 stress 0.03162101 
## ... Procrustes: rmse 3.03134e-05  max resid 6.26561e-05 
## ... Similar to previous best
## Run 58 stress 0.03162102 
## ... Procrustes: rmse 4.924991e-05  max resid 0.0001194225 
## ... Similar to previous best
## Run 59 stress 0.031621 
## ... Procrustes: rmse 2.026594e-05  max resid 3.654948e-05 
## ... Similar to previous best
## Run 60 stress 0.031621 
## ... Procrustes: rmse 1.400022e-05  max resid 3.238384e-05 
## ... Similar to previous best
## Run 61 stress 0.03162102 
## ... Procrustes: rmse 5.39203e-05  max resid 0.0001257077 
## ... Similar to previous best
## Run 62 stress 0.031621 
## ... Procrustes: rmse 9.354766e-06  max resid 2.323931e-05 
## ... Similar to previous best
## Run 63 stress 0.03162102 
## ... Procrustes: rmse 4.48508e-05  max resid 7.76759e-05 
## ... Similar to previous best
## Run 64 stress 0.03162101 
## ... Procrustes: rmse 3.962283e-05  max resid 9.707933e-05 
## ... Similar to previous best
## Run 65 stress 0.03162101 
## ... Procrustes: rmse 3.488517e-05  max resid 8.167636e-05 
## ... Similar to previous best
## Run 66 stress 0.03162102 
## ... Procrustes: rmse 4.438322e-05  max resid 0.0001028939 
## ... Similar to previous best
## Run 67 stress 0.031621 
## ... Procrustes: rmse 7.546157e-06  max resid 1.477567e-05 
## ... Similar to previous best
## Run 68 stress 0.031621 
## ... Procrustes: rmse 1.115161e-05  max resid 2.72023e-05 
## ... Similar to previous best
## Run 69 stress 0.1187659 
## Run 70 stress 0.03162101 
## ... Procrustes: rmse 3.879685e-05  max resid 8.79052e-05 
## ... Similar to previous best
## Run 71 stress 0.031621 
## ... Procrustes: rmse 6.150312e-06  max resid 1.098077e-05 
## ... Similar to previous best
## Run 72 stress 0.03162102 
## ... Procrustes: rmse 4.153665e-05  max resid 9.442041e-05 
## ... Similar to previous best
## Run 73 stress 0.031621 
## ... Procrustes: rmse 1.309318e-05  max resid 2.8724e-05 
## ... Similar to previous best
## Run 74 stress 0.031621 
## ... Procrustes: rmse 1.735697e-05  max resid 4.011072e-05 
## ... Similar to previous best
## Run 75 stress 0.031621 
## ... Procrustes: rmse 2.237369e-05  max resid 4.606302e-05 
## ... Similar to previous best
## Run 76 stress 0.03162102 
## ... Procrustes: rmse 5.533315e-05  max resid 0.0001287051 
## ... Similar to previous best
## Run 77 stress 0.031621 
## ... Procrustes: rmse 1.789022e-05  max resid 3.632558e-05 
## ... Similar to previous best
## Run 78 stress 0.031621 
## ... Procrustes: rmse 1.420864e-05  max resid 2.336415e-05 
## ... Similar to previous best
## Run 79 stress 0.031621 
## ... Procrustes: rmse 2.165338e-05  max resid 4.867376e-05 
## ... Similar to previous best
## Run 80 stress 0.331103 
## Run 81 stress 0.03162103 
## ... Procrustes: rmse 5.865909e-05  max resid 0.0001362545 
## ... Similar to previous best
## Run 82 stress 0.03162101 
## ... Procrustes: rmse 3.242425e-05  max resid 7.32478e-05 
## ... Similar to previous best
## Run 83 stress 0.03162102 
## ... Procrustes: rmse 5.357454e-05  max resid 0.0001059641 
## ... Similar to previous best
## Run 84 stress 0.03162103 
## ... Procrustes: rmse 6.544207e-05  max resid 0.0001315035 
## ... Similar to previous best
## Run 85 stress 0.03162103 
## ... Procrustes: rmse 5.570776e-05  max resid 0.0001291357 
## ... Similar to previous best
## Run 86 stress 0.031621 
## ... Procrustes: rmse 2.345467e-06  max resid 5.623904e-06 
## ... Similar to previous best
## Run 87 stress 0.031621 
## ... Procrustes: rmse 2.297302e-05  max resid 5.37619e-05 
## ... Similar to previous best
## Run 88 stress 0.031621 
## ... Procrustes: rmse 1.833879e-05  max resid 3.276622e-05 
## ... Similar to previous best
## Run 89 stress 0.031621 
## ... Procrustes: rmse 7.368877e-06  max resid 1.455656e-05 
## ... Similar to previous best
## Run 90 stress 0.031621 
## ... Procrustes: rmse 1.050287e-05  max resid 2.454955e-05 
## ... Similar to previous best
## Run 91 stress 0.03162101 
## ... Procrustes: rmse 3.641432e-05  max resid 9.102243e-05 
## ... Similar to previous best
## Run 92 stress 0.03162101 
## ... Procrustes: rmse 9.216754e-06  max resid 1.810218e-05 
## ... Similar to previous best
## Run 93 stress 0.031621 
## ... Procrustes: rmse 1.093834e-05  max resid 2.585912e-05 
## ... Similar to previous best
## Run 94 stress 0.031621 
## ... Procrustes: rmse 1.430211e-05  max resid 3.019644e-05 
## ... Similar to previous best
## Run 95 stress 0.03162101 
## ... Procrustes: rmse 2.076216e-05  max resid 4.327204e-05 
## ... Similar to previous best
## Run 96 stress 0.03162102 
## ... Procrustes: rmse 4.524195e-05  max resid 8.110196e-05 
## ... Similar to previous best
## Run 97 stress 0.1187658 
## Run 98 stress 0.031621 
## ... Procrustes: rmse 7.596743e-06  max resid 1.336103e-05 
## ... Similar to previous best
## Run 99 stress 0.031621 
## ... Procrustes: rmse 1.915517e-05  max resid 4.794095e-05 
## ... Similar to previous best
## Run 100 stress 0.03162101 
## ... Procrustes: rmse 3.412531e-05  max resid 8.184448e-05 
## ... Similar to previous best
## Run 101 stress 0.03162101 
## ... Procrustes: rmse 1.340025e-05  max resid 2.872128e-05 
## ... Similar to previous best
## Run 102 stress 0.031621 
## ... Procrustes: rmse 5.18232e-06  max resid 1.1202e-05 
## ... Similar to previous best
## Run 103 stress 0.03162102 
## ... Procrustes: rmse 5.595985e-05  max resid 0.0001298717 
## ... Similar to previous best
## Run 104 stress 0.03162101 
## ... Procrustes: rmse 9.152729e-06  max resid 1.850895e-05 
## ... Similar to previous best
## Run 105 stress 0.03162102 
## ... Procrustes: rmse 4.549939e-05  max resid 9.080049e-05 
## ... Similar to previous best
## Run 106 stress 0.031621 
## ... Procrustes: rmse 7.989219e-06  max resid 2.096244e-05 
## ... Similar to previous best
## Run 107 stress 0.031621 
## ... Procrustes: rmse 1.352692e-05  max resid 3.292043e-05 
## ... Similar to previous best
## Run 108 stress 0.03162103 
## ... Procrustes: rmse 6.26036e-05  max resid 0.000158387 
## ... Similar to previous best
## Run 109 stress 0.03162102 
## ... Procrustes: rmse 4.974062e-05  max resid 0.0001153347 
## ... Similar to previous best
## Run 110 stress 0.03162101 
## ... Procrustes: rmse 3.078526e-05  max resid 4.73982e-05 
## ... Similar to previous best
## Run 111 stress 0.03162101 
## ... Procrustes: rmse 2.876444e-05  max resid 6.339524e-05 
## ... Similar to previous best
## Run 112 stress 0.03162101 
## ... Procrustes: rmse 4.144642e-05  max resid 9.549911e-05 
## ... Similar to previous best
## Run 113 stress 0.03162101 
## ... Procrustes: rmse 2.957666e-05  max resid 5.717188e-05 
## ... Similar to previous best
## Run 114 stress 0.031621 
## ... Procrustes: rmse 1.403764e-05  max resid 3.076401e-05 
## ... Similar to previous best
## Run 115 stress 0.03162102 
## ... Procrustes: rmse 4.99249e-05  max resid 0.0001160312 
## ... Similar to previous best
## Run 116 stress 0.031621 
## ... Procrustes: rmse 4.472955e-06  max resid 1.110189e-05 
## ... Similar to previous best
## Run 117 stress 0.1191518 
## Run 118 stress 0.03162101 
## ... Procrustes: rmse 2.995917e-05  max resid 6.356499e-05 
## ... Similar to previous best
## Run 119 stress 0.03162101 
## ... Procrustes: rmse 3.373726e-05  max resid 6.934185e-05 
## ... Similar to previous best
## Run 120 stress 0.031621 
## ... Procrustes: rmse 7.750583e-06  max resid 1.886098e-05 
## ... Similar to previous best
## Run 121 stress 0.031621 
## ... Procrustes: rmse 6.927376e-06  max resid 1.531129e-05 
## ... Similar to previous best
## Run 122 stress 0.03162101 
## ... Procrustes: rmse 3.121301e-05  max resid 7.69183e-05 
## ... Similar to previous best
## Run 123 stress 0.03162101 
## ... Procrustes: rmse 3.850508e-05  max resid 7.592344e-05 
## ... Similar to previous best
## Run 124 stress 0.031621 
## ... Procrustes: rmse 1.107713e-05  max resid 2.497485e-05 
## ... Similar to previous best
## Run 125 stress 0.031621 
## ... Procrustes: rmse 5.520439e-06  max resid 9.629567e-06 
## ... Similar to previous best
## Run 126 stress 0.03162102 
## ... Procrustes: rmse 3.614311e-05  max resid 7.844359e-05 
## ... Similar to previous best
## Run 127 stress 0.031621 
## ... Procrustes: rmse 7.769353e-06  max resid 1.551489e-05 
## ... Similar to previous best
## Run 128 stress 0.031621 
## ... Procrustes: rmse 9.743356e-06  max resid 2.382218e-05 
## ... Similar to previous best
## Run 129 stress 0.03162101 
## ... Procrustes: rmse 3.159682e-05  max resid 6.109342e-05 
## ... Similar to previous best
## Run 130 stress 0.031621 
## ... Procrustes: rmse 1.76976e-05  max resid 2.778969e-05 
## ... Similar to previous best
## Run 131 stress 0.031621 
## ... Procrustes: rmse 7.73637e-06  max resid 1.781564e-05 
## ... Similar to previous best
## Run 132 stress 0.031621 
## ... Procrustes: rmse 8.23815e-06  max resid 1.566929e-05 
## ... Similar to previous best
## Run 133 stress 0.03162104 
## ... Procrustes: rmse 6.875679e-05  max resid 0.0001577001 
## ... Similar to previous best
## Run 134 stress 0.031621 
## ... Procrustes: rmse 1.794516e-05  max resid 3.389277e-05 
## ... Similar to previous best
## Run 135 stress 0.031621 
## ... Procrustes: rmse 1.421666e-05  max resid 2.702999e-05 
## ... Similar to previous best
## Run 136 stress 0.03162101 
## ... Procrustes: rmse 1.081802e-05  max resid 1.94578e-05 
## ... Similar to previous best
## Run 137 stress 0.031621 
## ... Procrustes: rmse 6.298568e-06  max resid 1.364333e-05 
## ... Similar to previous best
## Run 138 stress 0.031621 
## ... Procrustes: rmse 9.794241e-06  max resid 1.689397e-05 
## ... Similar to previous best
## Run 139 stress 0.118766 
## Run 140 stress 0.03162107 
## ... Procrustes: rmse 2.33559e-05  max resid 4.683008e-05 
## ... Similar to previous best
## Run 141 stress 0.1191518 
## Run 142 stress 0.03162102 
## ... Procrustes: rmse 4.642168e-05  max resid 9.297728e-05 
## ... Similar to previous best
## Run 143 stress 0.03162101 
## ... Procrustes: rmse 4.027597e-05  max resid 9.028633e-05 
## ... Similar to previous best
## Run 144 stress 0.03162103 
## ... Procrustes: rmse 6.086319e-05  max resid 9.698929e-05 
## ... Similar to previous best
## Run 145 stress 0.031621 
## ... Procrustes: rmse 3.168376e-06  max resid 7.833392e-06 
## ... Similar to previous best
## Run 146 stress 0.03162103 
## ... Procrustes: rmse 5.886851e-05  max resid 0.0001348919 
## ... Similar to previous best
## Run 147 stress 0.03162102 
## ... Procrustes: rmse 4.262636e-05  max resid 8.918378e-05 
## ... Similar to previous best
## Run 148 stress 0.031621 
## ... Procrustes: rmse 9.359908e-06  max resid 1.602345e-05 
## ... Similar to previous best
## Run 149 stress 0.031621 
## ... Procrustes: rmse 1.660283e-05  max resid 3.894497e-05 
## ... Similar to previous best
## Run 150 stress 0.031621 
## ... Procrustes: rmse 4.391161e-06  max resid 7.849465e-06 
## ... Similar to previous best
## Run 151 stress 0.1187656 
## Run 152 stress 0.031621 
## ... Procrustes: rmse 1.923628e-06  max resid 4.151204e-06 
## ... Similar to previous best
## Run 153 stress 0.031621 
## ... Procrustes: rmse 9.199236e-06  max resid 2.219358e-05 
## ... Similar to previous best
## Run 154 stress 0.031621 
## ... Procrustes: rmse 1.019099e-05  max resid 2.372017e-05 
## ... Similar to previous best
## Run 155 stress 0.031621 
## ... Procrustes: rmse 1.338446e-05  max resid 2.933418e-05 
## ... Similar to previous best
## Run 156 stress 0.031621 
## ... Procrustes: rmse 1.345234e-05  max resid 2.108584e-05 
## ... Similar to previous best
## Run 157 stress 0.031621 
## ... Procrustes: rmse 1.14578e-05  max resid 2.630854e-05 
## ... Similar to previous best
## Run 158 stress 0.03162101 
## ... Procrustes: rmse 2.928422e-05  max resid 6.151447e-05 
## ... Similar to previous best
## Run 159 stress 0.03162102 
## ... Procrustes: rmse 5.008178e-05  max resid 0.0001216181 
## ... Similar to previous best
## Run 160 stress 0.031621 
## ... Procrustes: rmse 2.094589e-05  max resid 3.288096e-05 
## ... Similar to previous best
## Run 161 stress 0.03162103 
## ... Procrustes: rmse 5.772548e-05  max resid 0.0001128764 
## ... Similar to previous best
## Run 162 stress 0.031621 
## ... Procrustes: rmse 2.174838e-05  max resid 5.145058e-05 
## ... Similar to previous best
## Run 163 stress 0.03162101 
## ... Procrustes: rmse 3.408855e-05  max resid 6.898959e-05 
## ... Similar to previous best
## Run 164 stress 0.03162101 
## ... Procrustes: rmse 1.640776e-05  max resid 3.221354e-05 
## ... Similar to previous best
## Run 165 stress 0.03162102 
## ... Procrustes: rmse 4.561745e-05  max resid 9.354134e-05 
## ... Similar to previous best
## Run 166 stress 0.1187655 
## Run 167 stress 0.1187657 
## Run 168 stress 0.031621 
## ... Procrustes: rmse 1.331507e-05  max resid 2.792995e-05 
## ... Similar to previous best
## Run 169 stress 0.031621 
## ... Procrustes: rmse 2.268817e-05  max resid 5.397901e-05 
## ... Similar to previous best
## Run 170 stress 0.031621 
## ... Procrustes: rmse 7.920248e-06  max resid 1.887575e-05 
## ... Similar to previous best
## Run 171 stress 0.031621 
## ... Procrustes: rmse 2.00751e-05  max resid 3.659968e-05 
## ... Similar to previous best
## Run 172 stress 0.03162102 
## ... Procrustes: rmse 5.124602e-05  max resid 0.0001025002 
## ... Similar to previous best
## Run 173 stress 0.03162103 
## ... Procrustes: rmse 5.85695e-05  max resid 0.0001319909 
## ... Similar to previous best
## Run 174 stress 0.031621 
## ... Procrustes: rmse 1.166813e-05  max resid 2.796564e-05 
## ... Similar to previous best
## Run 175 stress 0.1981674 
## Run 176 stress 0.03162102 
## ... Procrustes: rmse 4.630551e-05  max resid 7.817752e-05 
## ... Similar to previous best
## Run 177 stress 0.03162101 
## ... Procrustes: rmse 4.096345e-05  max resid 9.581179e-05 
## ... Similar to previous best
## Run 178 stress 0.1981674 
## Run 179 stress 0.03162102 
## ... Procrustes: rmse 5.055805e-05  max resid 0.0001212007 
## ... Similar to previous best
## Run 180 stress 0.031621 
## ... Procrustes: rmse 5.848016e-06  max resid 1.222744e-05 
## ... Similar to previous best
## Run 181 stress 0.118766 
## Run 182 stress 0.03162101 
## ... Procrustes: rmse 3.078808e-05  max resid 7.237596e-05 
## ... Similar to previous best
## Run 183 stress 0.03162101 
## ... Procrustes: rmse 2.779067e-05  max resid 5.158787e-05 
## ... Similar to previous best
## Run 184 stress 0.031621 
## ... Procrustes: rmse 2.245717e-05  max resid 4.707777e-05 
## ... Similar to previous best
## Run 185 stress 0.031621 
## ... Procrustes: rmse 1.11261e-05  max resid 2.552253e-05 
## ... Similar to previous best
## Run 186 stress 0.03162101 
## ... Procrustes: rmse 2.853299e-05  max resid 6.487292e-05 
## ... Similar to previous best
## Run 187 stress 0.03162102 
## ... Procrustes: rmse 4.591022e-05  max resid 8.247311e-05 
## ... Similar to previous best
## Run 188 stress 0.03162102 
## ... Procrustes: rmse 5.082695e-05  max resid 0.0001208605 
## ... Similar to previous best
## Run 189 stress 0.031621 
## ... Procrustes: rmse 6.929919e-06  max resid 1.743558e-05 
## ... Similar to previous best
## Run 190 stress 0.03162101 
## ... Procrustes: rmse 2.820816e-05  max resid 6.301989e-05 
## ... Similar to previous best
## Run 191 stress 0.031621 
## ... Procrustes: rmse 1.210469e-05  max resid 2.892661e-05 
## ... Similar to previous best
## Run 192 stress 0.031621 
## ... Procrustes: rmse 9.50476e-06  max resid 1.684603e-05 
## ... Similar to previous best
## Run 193 stress 0.031621 
## ... New best solution
## ... Procrustes: rmse 2.521598e-06  max resid 5.830114e-06 
## ... Similar to previous best
## Run 194 stress 0.03162103 
## ... Procrustes: rmse 6.101365e-05  max resid 0.000140854 
## ... Similar to previous best
## Run 195 stress 0.1187657 
## Run 196 stress 0.1191519 
## Run 197 stress 0.031621 
## ... Procrustes: rmse 2.561607e-05  max resid 6.42839e-05 
## ... Similar to previous best
## Run 198 stress 0.031621 
## ... Procrustes: rmse 4.865201e-06  max resid 1.532206e-05 
## ... Similar to previous best
## Run 199 stress 0.031621 
## ... Procrustes: rmse 6.662297e-06  max resid 1.374684e-05 
## ... Similar to previous best
## Run 200 stress 0.031621 
## ... Procrustes: rmse 1.023853e-05  max resid 2.108739e-05 
## ... Similar to previous best
## Run 201 stress 0.03162104 
## ... Procrustes: rmse 5.957326e-05  max resid 0.0001203097 
## ... Similar to previous best
## Run 202 stress 0.031621 
## ... Procrustes: rmse 1.606285e-05  max resid 2.519604e-05 
## ... Similar to previous best
## Run 203 stress 0.031621 
## ... Procrustes: rmse 2.775233e-05  max resid 5.722555e-05 
## ... Similar to previous best
## Run 204 stress 0.03162101 
## ... Procrustes: rmse 2.555427e-05  max resid 5.67954e-05 
## ... Similar to previous best
## Run 205 stress 0.03162101 
## ... Procrustes: rmse 3.756727e-05  max resid 8.249568e-05 
## ... Similar to previous best
## Run 206 stress 0.031621 
## ... Procrustes: rmse 7.806649e-06  max resid 1.846651e-05 
## ... Similar to previous best
## Run 207 stress 0.031621 
## ... Procrustes: rmse 1.164527e-05  max resid 2.727621e-05 
## ... Similar to previous best
## Run 208 stress 0.03162101 
## ... Procrustes: rmse 2.865206e-05  max resid 6.556873e-05 
## ... Similar to previous best
## Run 209 stress 0.031621 
## ... Procrustes: rmse 1.522417e-05  max resid 3.670278e-05 
## ... Similar to previous best
## Run 210 stress 0.03162102 
## ... Procrustes: rmse 4.884887e-05  max resid 0.0001017565 
## ... Similar to previous best
## Run 211 stress 0.031621 
## ... Procrustes: rmse 2.500423e-05  max resid 5.801697e-05 
## ... Similar to previous best
## Run 212 stress 0.031621 
## ... Procrustes: rmse 6.63568e-06  max resid 1.507818e-05 
## ... Similar to previous best
## Run 213 stress 0.031621 
## ... Procrustes: rmse 1.329339e-05  max resid 3.007295e-05 
## ... Similar to previous best
## Run 214 stress 0.03162101 
## ... Procrustes: rmse 3.120549e-05  max resid 7.690983e-05 
## ... Similar to previous best
## Run 215 stress 0.03162102 
## ... Procrustes: rmse 4.728464e-05  max resid 9.435908e-05 
## ... Similar to previous best
## Run 216 stress 0.031621 
## ... Procrustes: rmse 7.452197e-06  max resid 1.788263e-05 
## ... Similar to previous best
## Run 217 stress 0.031621 
## ... Procrustes: rmse 1.010125e-05  max resid 1.63541e-05 
## ... Similar to previous best
## Run 218 stress 0.031621 
## ... Procrustes: rmse 4.386626e-06  max resid 8.98624e-06 
## ... Similar to previous best
## Run 219 stress 0.1191515 
## Run 220 stress 0.03162103 
## ... Procrustes: rmse 6.605325e-05  max resid 0.000132241 
## ... Similar to previous best
## Run 221 stress 0.031621 
## ... Procrustes: rmse 9.316101e-06  max resid 2.341918e-05 
## ... Similar to previous best
## Run 222 stress 0.03162101 
## ... Procrustes: rmse 3.309602e-05  max resid 7.700954e-05 
## ... Similar to previous best
## Run 223 stress 0.03162101 
## ... Procrustes: rmse 3.544946e-05  max resid 8.26802e-05 
## ... Similar to previous best
## Run 224 stress 0.03162102 
## ... Procrustes: rmse 4.529568e-05  max resid 0.0001050997 
## ... Similar to previous best
## Run 225 stress 0.03162102 
## ... Procrustes: rmse 4.467845e-05  max resid 0.0001056701 
## ... Similar to previous best
## Run 226 stress 0.03162101 
## ... Procrustes: rmse 3.053417e-05  max resid 4.810234e-05 
## ... Similar to previous best
## Run 227 stress 0.1187656 
## Run 228 stress 0.03162101 
## ... Procrustes: rmse 1.815836e-05  max resid 3.519596e-05 
## ... Similar to previous best
## Run 229 stress 0.03162101 
## ... Procrustes: rmse 3.546688e-05  max resid 8.18207e-05 
## ... Similar to previous best
## Run 230 stress 0.1191518 
## Run 231 stress 0.03162101 
## ... Procrustes: rmse 3.260917e-05  max resid 6.778497e-05 
## ... Similar to previous best
## Run 232 stress 0.1187657 
## Run 233 stress 0.031621 
## ... Procrustes: rmse 6.419169e-06  max resid 1.02464e-05 
## ... Similar to previous best
## Run 234 stress 0.118766 
## Run 235 stress 0.03162101 
## ... Procrustes: rmse 3.834007e-05  max resid 7.822119e-05 
## ... Similar to previous best
## Run 236 stress 0.031621 
## ... Procrustes: rmse 2.525168e-05  max resid 5.975776e-05 
## ... Similar to previous best
## Run 237 stress 0.03162101 
## ... Procrustes: rmse 2.983077e-05  max resid 7.085165e-05 
## ... Similar to previous best
## Run 238 stress 0.031621 
## ... Procrustes: rmse 2.742355e-05  max resid 5.690232e-05 
## ... Similar to previous best
## Run 239 stress 0.03162101 
## ... Procrustes: rmse 3.700367e-05  max resid 8.480439e-05 
## ... Similar to previous best
## Run 240 stress 0.03162102 
## ... Procrustes: rmse 1.471176e-05  max resid 2.847833e-05 
## ... Similar to previous best
## Run 241 stress 0.031621 
## ... Procrustes: rmse 1.389428e-05  max resid 2.947285e-05 
## ... Similar to previous best
## Run 242 stress 0.03162101 
## ... Procrustes: rmse 3.678548e-05  max resid 6.48151e-05 
## ... Similar to previous best
## Run 243 stress 0.031621 
## ... Procrustes: rmse 5.51275e-06  max resid 1.46009e-05 
## ... Similar to previous best
## Run 244 stress 0.031621 
## ... Procrustes: rmse 1.771539e-05  max resid 3.620046e-05 
## ... Similar to previous best
## Run 245 stress 0.03162103 
## ... Procrustes: rmse 4.886214e-05  max resid 0.0001143833 
## ... Similar to previous best
## Run 246 stress 0.03162103 
## ... Procrustes: rmse 6.065058e-05  max resid 0.0001425243 
## ... Similar to previous best
## Run 247 stress 0.03162101 
## ... Procrustes: rmse 3.004105e-05  max resid 4.735659e-05 
## ... Similar to previous best
## Run 248 stress 0.031621 
## ... Procrustes: rmse 2.080854e-05  max resid 4.939758e-05 
## ... Similar to previous best
## Run 249 stress 0.03162102 
## ... Procrustes: rmse 5.439788e-05  max resid 0.0001259805 
## ... Similar to previous best
## Run 250 stress 0.031621 
## ... Procrustes: rmse 1.874251e-05  max resid 3.006794e-05 
## ... Similar to previous best
## Run 251 stress 0.03162102 
## ... Procrustes: rmse 1.362355e-05  max resid 2.722053e-05 
## ... Similar to previous best
## Run 252 stress 0.03162102 
## ... Procrustes: rmse 5.390983e-05  max resid 9.172175e-05 
## ... Similar to previous best
## Run 253 stress 0.031621 
## ... Procrustes: rmse 2.846932e-05  max resid 6.097951e-05 
## ... Similar to previous best
## Run 254 stress 0.03162101 
## ... Procrustes: rmse 4.163275e-05  max resid 9.707878e-05 
## ... Similar to previous best
## Run 255 stress 0.03162101 
## ... Procrustes: rmse 3.21541e-05  max resid 6.446942e-05 
## ... Similar to previous best
## Run 256 stress 0.031621 
## ... Procrustes: rmse 7.954896e-06  max resid 1.925987e-05 
## ... Similar to previous best
## Run 257 stress 0.031621 
## ... Procrustes: rmse 2.155519e-05  max resid 4.681419e-05 
## ... Similar to previous best
## Run 258 stress 0.03162101 
## ... Procrustes: rmse 2.575246e-05  max resid 6.010111e-05 
## ... Similar to previous best
## Run 259 stress 0.03162101 
## ... Procrustes: rmse 3.884304e-05  max resid 8.154193e-05 
## ... Similar to previous best
## Run 260 stress 0.031621 
## ... Procrustes: rmse 9.801094e-06  max resid 1.970275e-05 
## ... Similar to previous best
## Run 261 stress 0.03162109 
## ... Procrustes: rmse 2.620291e-05  max resid 5.34167e-05 
## ... Similar to previous best
## Run 262 stress 0.031621 
## ... Procrustes: rmse 3.097318e-06  max resid 5.958118e-06 
## ... Similar to previous best
## Run 263 stress 0.03162101 
## ... Procrustes: rmse 2.987417e-05  max resid 7.166639e-05 
## ... Similar to previous best
## Run 264 stress 0.031621 
## ... Procrustes: rmse 1.773866e-05  max resid 4.267063e-05 
## ... Similar to previous best
## Run 265 stress 0.031621 
## ... Procrustes: rmse 2.465706e-05  max resid 5.850309e-05 
## ... Similar to previous best
## Run 266 stress 0.03162101 
## ... Procrustes: rmse 1.16518e-05  max resid 2.26784e-05 
## ... Similar to previous best
## Run 267 stress 0.031621 
## ... Procrustes: rmse 9.673572e-06  max resid 1.80434e-05 
## ... Similar to previous best
## Run 268 stress 0.031621 
## ... Procrustes: rmse 1.771544e-05  max resid 4.474723e-05 
## ... Similar to previous best
## Run 269 stress 0.031621 
## ... Procrustes: rmse 7.831905e-06  max resid 1.557441e-05 
## ... Similar to previous best
## Run 270 stress 0.031621 
## ... Procrustes: rmse 4.726696e-06  max resid 9.75517e-06 
## ... Similar to previous best
## Run 271 stress 0.031621 
## ... Procrustes: rmse 2.49684e-05  max resid 4.725055e-05 
## ... Similar to previous best
## Run 272 stress 0.031621 
## ... Procrustes: rmse 1.027765e-05  max resid 2.195593e-05 
## ... Similar to previous best
## Run 273 stress 0.03162101 
## ... Procrustes: rmse 1.77181e-05  max resid 3.868875e-05 
## ... Similar to previous best
## Run 274 stress 0.1187661 
## Run 275 stress 0.031621 
## ... Procrustes: rmse 9.127269e-06  max resid 1.704117e-05 
## ... Similar to previous best
## Run 276 stress 0.031621 
## ... Procrustes: rmse 2.005782e-05  max resid 4.102564e-05 
## ... Similar to previous best
## Run 277 stress 0.031621 
## ... Procrustes: rmse 1.001543e-05  max resid 2.301434e-05 
## ... Similar to previous best
## Run 278 stress 0.031621 
## ... Procrustes: rmse 1.318197e-05  max resid 2.33926e-05 
## ... Similar to previous best
## Run 279 stress 0.1981674 
## Run 280 stress 0.031621 
## ... Procrustes: rmse 9.499808e-06  max resid 1.537283e-05 
## ... Similar to previous best
## Run 281 stress 0.031621 
## ... Procrustes: rmse 5.405042e-06  max resid 1.482319e-05 
## ... Similar to previous best
## Run 282 stress 0.03162102 
## ... Procrustes: rmse 4.465903e-05  max resid 0.0001047101 
## ... Similar to previous best
## Run 283 stress 0.031621 
## ... Procrustes: rmse 1.507289e-05  max resid 3.548877e-05 
## ... Similar to previous best
## Run 284 stress 0.031621 
## ... Procrustes: rmse 2.5009e-05  max resid 4.968052e-05 
## ... Similar to previous best
## Run 285 stress 0.03162101 
## ... Procrustes: rmse 3.632211e-05  max resid 8.691044e-05 
## ... Similar to previous best
## Run 286 stress 0.03162101 
## ... Procrustes: rmse 3.217243e-05  max resid 8.124143e-05 
## ... Similar to previous best
## Run 287 stress 0.031621 
## ... Procrustes: rmse 5.653555e-06  max resid 1.286426e-05 
## ... Similar to previous best
## Run 288 stress 0.031621 
## ... Procrustes: rmse 1.393831e-05  max resid 3.442234e-05 
## ... Similar to previous best
## Run 289 stress 0.03162104 
## ... Procrustes: rmse 5.625302e-05  max resid 0.0001047889 
## ... Similar to previous best
## Run 290 stress 0.031621 
## ... Procrustes: rmse 1.955704e-06  max resid 3.634441e-06 
## ... Similar to previous best
## Run 291 stress 0.031621 
## ... Procrustes: rmse 2.62551e-05  max resid 6.254668e-05 
## ... Similar to previous best
## Run 292 stress 0.03162101 
## ... Procrustes: rmse 4.159686e-05  max resid 8.453596e-05 
## ... Similar to previous best
## Run 293 stress 0.031621 
## ... Procrustes: rmse 8.119365e-06  max resid 1.551695e-05 
## ... Similar to previous best
## Run 294 stress 0.03162102 
## ... Procrustes: rmse 5.454852e-05  max resid 9.742201e-05 
## ... Similar to previous best
## Run 295 stress 0.031621 
## ... Procrustes: rmse 4.003479e-06  max resid 8.50966e-06 
## ... Similar to previous best
## Run 296 stress 0.1191515 
## Run 297 stress 0.031621 
## ... Procrustes: rmse 1.773409e-06  max resid 4.036653e-06 
## ... Similar to previous best
## Run 298 stress 0.031621 
## ... Procrustes: rmse 2.301144e-05  max resid 5.411951e-05 
## ... Similar to previous best
## Run 299 stress 0.031621 
## ... Procrustes: rmse 2.299835e-05  max resid 4.528644e-05 
## ... Similar to previous best
## Run 300 stress 0.031621 
## ... Procrustes: rmse 5.275338e-06  max resid 1.208664e-05 
## ... Similar to previous best
## Run 301 stress 0.03162101 
## ... Procrustes: rmse 3.68009e-05  max resid 8.487723e-05 
## ... Similar to previous best
## Run 302 stress 0.031621 
## ... Procrustes: rmse 2.215454e-06  max resid 4.850805e-06 
## ... Similar to previous best
## Run 303 stress 0.03162102 
## ... Procrustes: rmse 5.100222e-05  max resid 0.0001270559 
## ... Similar to previous best
## Run 304 stress 0.03162103 
## ... Procrustes: rmse 5.252975e-05  max resid 0.0001051526 
## ... Similar to previous best
## Run 305 stress 0.03162102 
## ... Procrustes: rmse 5.092374e-05  max resid 0.0001041497 
## ... Similar to previous best
## Run 306 stress 0.03162103 
## ... Procrustes: rmse 6.332668e-05  max resid 0.0001277623 
## ... Similar to previous best
## Run 307 stress 0.03162102 
## ... Procrustes: rmse 4.618426e-05  max resid 9.87755e-05 
## ... Similar to previous best
## Run 308 stress 0.03162102 
## ... Procrustes: rmse 4.594207e-05  max resid 9.841356e-05 
## ... Similar to previous best
## Run 309 stress 0.1191527 
## Run 310 stress 0.031621 
## ... Procrustes: rmse 6.53532e-06  max resid 1.546128e-05 
## ... Similar to previous best
## Run 311 stress 0.031621 
## ... Procrustes: rmse 1.064084e-05  max resid 2.361864e-05 
## ... Similar to previous best
## Run 312 stress 0.031621 
## ... Procrustes: rmse 1.878002e-05  max resid 3.376527e-05 
## ... Similar to previous best
## Run 313 stress 0.03162104 
## ... Procrustes: rmse 6.381623e-05  max resid 0.0001270598 
## ... Similar to previous best
## Run 314 stress 0.031621 
## ... Procrustes: rmse 7.820381e-06  max resid 1.492844e-05 
## ... Similar to previous best
## Run 315 stress 0.03162101 
## ... Procrustes: rmse 1.016109e-05  max resid 2.462488e-05 
## ... Similar to previous best
## Run 316 stress 0.03162102 
## ... Procrustes: rmse 5.010635e-05  max resid 0.0001163893 
## ... Similar to previous best
## Run 317 stress 0.03162103 
## ... Procrustes: rmse 6.174573e-05  max resid 0.0001522073 
## ... Similar to previous best
## Run 318 stress 0.03162101 
## ... Procrustes: rmse 2.864282e-05  max resid 6.794298e-05 
## ... Similar to previous best
## Run 319 stress 0.03162103 
## ... Procrustes: rmse 6.511396e-05  max resid 0.0001283752 
## ... Similar to previous best
## Run 320 stress 0.031621 
## ... Procrustes: rmse 2.197723e-05  max resid 4.661631e-05 
## ... Similar to previous best
## Run 321 stress 0.031621 
## ... Procrustes: rmse 8.17618e-06  max resid 2.034373e-05 
## ... Similar to previous best
## Run 322 stress 0.03162101 
## ... Procrustes: rmse 3.051579e-05  max resid 7.207257e-05 
## ... Similar to previous best
## Run 323 stress 0.03162102 
## ... Procrustes: rmse 5.363019e-05  max resid 0.0001347255 
## ... Similar to previous best
## Run 324 stress 0.031621 
## ... Procrustes: rmse 9.430367e-07  max resid 1.684579e-06 
## ... Similar to previous best
## Run 325 stress 0.031621 
## ... Procrustes: rmse 1.922146e-05  max resid 3.571825e-05 
## ... Similar to previous best
## Run 326 stress 0.03162102 
## ... Procrustes: rmse 4.969294e-05  max resid 0.0001148025 
## ... Similar to previous best
## Run 327 stress 0.031621 
## ... Procrustes: rmse 5.514203e-06  max resid 1.080886e-05 
## ... Similar to previous best
## Run 328 stress 0.031621 
## ... Procrustes: rmse 1.621782e-05  max resid 3.276081e-05 
## ... Similar to previous best
## Run 329 stress 0.031621 
## ... Procrustes: rmse 3.433447e-06  max resid 6.86281e-06 
## ... Similar to previous best
## Run 330 stress 0.03162101 
## ... Procrustes: rmse 2.98061e-05  max resid 6.963108e-05 
## ... Similar to previous best
## Run 331 stress 0.03162101 
## ... Procrustes: rmse 3.733283e-05  max resid 8.966791e-05 
## ... Similar to previous best
## Run 332 stress 0.03162102 
## ... Procrustes: rmse 4.806131e-05  max resid 9.866614e-05 
## ... Similar to previous best
## Run 333 stress 0.031621 
## ... Procrustes: rmse 2.555686e-05  max resid 6.184285e-05 
## ... Similar to previous best
## Run 334 stress 0.031621 
## ... Procrustes: rmse 2.182733e-06  max resid 3.848446e-06 
## ... Similar to previous best
## Run 335 stress 0.031621 
## ... Procrustes: rmse 1.62032e-05  max resid 3.116127e-05 
## ... Similar to previous best
## Run 336 stress 0.03162101 
## ... Procrustes: rmse 2.587731e-05  max resid 4.643055e-05 
## ... Similar to previous best
## Run 337 stress 0.03162101 
## ... Procrustes: rmse 3.440664e-05  max resid 7.823454e-05 
## ... Similar to previous best
## Run 338 stress 0.031621 
## ... Procrustes: rmse 8.438584e-07  max resid 2.170056e-06 
## ... Similar to previous best
## Run 339 stress 0.031621 
## ... Procrustes: rmse 2.239702e-05  max resid 5.446123e-05 
## ... Similar to previous best
## Run 340 stress 0.1187657 
## Run 341 stress 0.03162101 
## ... Procrustes: rmse 3.868222e-05  max resid 9.01448e-05 
## ... Similar to previous best
## Run 342 stress 0.1187659 
## Run 343 stress 0.1187659 
## Run 344 stress 0.031621 
## ... Procrustes: rmse 2.202503e-05  max resid 5.51287e-05 
## ... Similar to previous best
## Run 345 stress 0.031621 
## ... Procrustes: rmse 1.81101e-05  max resid 4.137687e-05 
## ... Similar to previous best
## Run 346 stress 0.03162103 
## ... Procrustes: rmse 5.964102e-05  max resid 9.50507e-05 
## ... Similar to previous best
## Run 347 stress 0.03162101 
## ... Procrustes: rmse 4.098713e-05  max resid 9.809675e-05 
## ... Similar to previous best
## Run 348 stress 0.03162103 
## ... Procrustes: rmse 5.502964e-05  max resid 0.0001289752 
## ... Similar to previous best
## Run 349 stress 0.031621 
## ... Procrustes: rmse 1.380752e-05  max resid 2.161091e-05 
## ... Similar to previous best
## Run 350 stress 0.031621 
## ... Procrustes: rmse 7.641443e-06  max resid 1.560824e-05 
## ... Similar to previous best
## Run 351 stress 0.03162101 
## ... Procrustes: rmse 4.421527e-05  max resid 9.031188e-05 
## ... Similar to previous best
## Run 352 stress 0.031621 
## ... Procrustes: rmse 2.698649e-05  max resid 5.185112e-05 
## ... Similar to previous best
## Run 353 stress 0.03162102 
## ... Procrustes: rmse 4.794936e-05  max resid 0.0001118257 
## ... Similar to previous best
## Run 354 stress 0.031621 
## ... Procrustes: rmse 6.963173e-06  max resid 1.649219e-05 
## ... Similar to previous best
## Run 355 stress 0.031621 
## ... Procrustes: rmse 2.008781e-06  max resid 3.591873e-06 
## ... Similar to previous best
## Run 356 stress 0.031621 
## ... Procrustes: rmse 6.1484e-06  max resid 1.087639e-05 
## ... Similar to previous best
## Run 357 stress 0.031621 
## ... Procrustes: rmse 2.165102e-05  max resid 4.330612e-05 
## ... Similar to previous best
## Run 358 stress 0.03162101 
## ... Procrustes: rmse 2.936675e-05  max resid 6.659112e-05 
## ... Similar to previous best
## Run 359 stress 0.1187657 
## Run 360 stress 0.03162102 
## ... Procrustes: rmse 5.462521e-05  max resid 0.0001285533 
## ... Similar to previous best
## Run 361 stress 0.03162103 
## ... Procrustes: rmse 5.618067e-05  max resid 0.0001341778 
## ... Similar to previous best
## Run 362 stress 0.031621 
## ... Procrustes: rmse 9.333298e-06  max resid 2.342511e-05 
## ... Similar to previous best
## Run 363 stress 0.031621 
## ... Procrustes: rmse 1.532115e-05  max resid 3.569832e-05 
## ... Similar to previous best
## Run 364 stress 0.031621 
## ... Procrustes: rmse 8.271903e-06  max resid 2.042447e-05 
## ... Similar to previous best
## Run 365 stress 0.03162103 
## ... Procrustes: rmse 5.54202e-05  max resid 0.0001259455 
## ... Similar to previous best
## Run 366 stress 0.3317222 
## Run 367 stress 0.03162101 
## ... Procrustes: rmse 4.417028e-05  max resid 8.861835e-05 
## ... Similar to previous best
## Run 368 stress 0.1191515 
## Run 369 stress 0.03162101 
## ... Procrustes: rmse 2.725949e-05  max resid 5.532545e-05 
## ... Similar to previous best
## Run 370 stress 0.03162101 
## ... Procrustes: rmse 1.940221e-05  max resid 4.409348e-05 
## ... Similar to previous best
## Run 371 stress 0.031621 
## ... Procrustes: rmse 1.881571e-05  max resid 4.33828e-05 
## ... Similar to previous best
## Run 372 stress 0.03162101 
## ... Procrustes: rmse 3.031257e-05  max resid 7.132192e-05 
## ... Similar to previous best
## Run 373 stress 0.03162101 
## ... Procrustes: rmse 2.760437e-05  max resid 6.430788e-05 
## ... Similar to previous best
## Run 374 stress 0.031621 
## ... Procrustes: rmse 1.610537e-05  max resid 3.833081e-05 
## ... Similar to previous best
## Run 375 stress 0.1187661 
## Run 376 stress 0.031621 
## ... Procrustes: rmse 1.157015e-05  max resid 2.658452e-05 
## ... Similar to previous best
## Run 377 stress 0.031621 
## ... Procrustes: rmse 2.795223e-05  max resid 5.13678e-05 
## ... Similar to previous best
## Run 378 stress 0.031621 
## ... Procrustes: rmse 3.126044e-06  max resid 5.035345e-06 
## ... Similar to previous best
## Run 379 stress 0.03162101 
## ... Procrustes: rmse 3.434014e-05  max resid 7.015971e-05 
## ... Similar to previous best
## Run 380 stress 0.031621 
## ... Procrustes: rmse 9.756333e-06  max resid 1.411964e-05 
## ... Similar to previous best
## Run 381 stress 0.031621 
## ... Procrustes: rmse 1.951509e-05  max resid 3.87593e-05 
## ... Similar to previous best
## Run 382 stress 0.03162101 
## ... Procrustes: rmse 3.81548e-05  max resid 8.220391e-05 
## ... Similar to previous best
## Run 383 stress 0.031621 
## ... Procrustes: rmse 5.791401e-06  max resid 1.379296e-05 
## ... Similar to previous best
## Run 384 stress 0.031621 
## ... Procrustes: rmse 4.585624e-06  max resid 9.859195e-06 
## ... Similar to previous best
## Run 385 stress 0.031621 
## ... Procrustes: rmse 1.576562e-05  max resid 3.043579e-05 
## ... Similar to previous best
## Run 386 stress 0.031621 
## ... Procrustes: rmse 1.032288e-05  max resid 2.376469e-05 
## ... Similar to previous best
## Run 387 stress 0.03162102 
## ... Procrustes: rmse 5.072997e-05  max resid 0.000101732 
## ... Similar to previous best
## Run 388 stress 0.03162104 
## ... Procrustes: rmse 7.252605e-05  max resid 0.0001483872 
## ... Similar to previous best
## Run 389 stress 0.1981674 
## Run 390 stress 0.03162103 
## ... Procrustes: rmse 5.718351e-05  max resid 9.466634e-05 
## ... Similar to previous best
## Run 391 stress 0.03162102 
## ... Procrustes: rmse 5.184295e-05  max resid 0.0001171764 
## ... Similar to previous best
## Run 392 stress 0.031621 
## ... Procrustes: rmse 1.298245e-05  max resid 3.104307e-05 
## ... Similar to previous best
## Run 393 stress 0.031621 
## ... Procrustes: rmse 3.313745e-06  max resid 7.939043e-06 
## ... Similar to previous best
## Run 394 stress 0.03162101 
## ... Procrustes: rmse 3.954206e-05  max resid 9.069276e-05 
## ... Similar to previous best
## Run 395 stress 0.031621 
## ... Procrustes: rmse 7.982671e-06  max resid 1.866089e-05 
## ... Similar to previous best
## Run 396 stress 0.1187655 
## Run 397 stress 0.031621 
## ... Procrustes: rmse 2.274673e-05  max resid 5.212107e-05 
## ... Similar to previous best
## Run 398 stress 0.03162101 
## ... Procrustes: rmse 4.022564e-05  max resid 7.657797e-05 
## ... Similar to previous best
## Run 399 stress 0.031621 
## ... Procrustes: rmse 9.807073e-06  max resid 2.137151e-05 
## ... Similar to previous best
## Run 400 stress 0.031621 
## ... Procrustes: rmse 1.521868e-05  max resid 3.290913e-05 
## ... Similar to previous best
## Run 401 stress 0.031621 
## ... Procrustes: rmse 1.73855e-05  max resid 3.489459e-05 
## ... Similar to previous best
## Run 402 stress 0.03162101 
## ... Procrustes: rmse 4.389864e-05  max resid 0.000102793 
## ... Similar to previous best
## Run 403 stress 0.031621 
## ... Procrustes: rmse 6.127446e-06  max resid 1.201648e-05 
## ... Similar to previous best
## Run 404 stress 0.031621 
## ... Procrustes: rmse 6.208345e-06  max resid 1.393885e-05 
## ... Similar to previous best
## Run 405 stress 0.03162101 
## ... Procrustes: rmse 3.330648e-05  max resid 6.337335e-05 
## ... Similar to previous best
## Run 406 stress 0.031621 
## ... Procrustes: rmse 2.774427e-06  max resid 6.771931e-06 
## ... Similar to previous best
## Run 407 stress 0.031621 
## ... Procrustes: rmse 6.339803e-06  max resid 1.405238e-05 
## ... Similar to previous best
## Run 408 stress 0.031621 
## ... Procrustes: rmse 2.106975e-05  max resid 4.385681e-05 
## ... Similar to previous best
## Run 409 stress 0.031621 
## ... Procrustes: rmse 2.513257e-05  max resid 6.068122e-05 
## ... Similar to previous best
## Run 410 stress 0.03162106 
## ... Procrustes: rmse 1.992369e-05  max resid 4.674194e-05 
## ... Similar to previous best
## Run 411 stress 0.031621 
## ... Procrustes: rmse 2.178136e-05  max resid 4.646522e-05 
## ... Similar to previous best
## Run 412 stress 0.03162102 
## ... Procrustes: rmse 5.230294e-05  max resid 8.213883e-05 
## ... Similar to previous best
## Run 413 stress 0.03162103 
## ... Procrustes: rmse 5.808684e-05  max resid 0.000116416 
## ... Similar to previous best
## Run 414 stress 0.031621 
## ... Procrustes: rmse 5.846796e-06  max resid 1.333461e-05 
## ... Similar to previous best
## Run 415 stress 0.031621 
## ... Procrustes: rmse 2.350514e-05  max resid 4.844502e-05 
## ... Similar to previous best
## Run 416 stress 0.03162102 
## ... Procrustes: rmse 4.347277e-05  max resid 8.917049e-05 
## ... Similar to previous best
## Run 417 stress 0.03162101 
## ... Procrustes: rmse 2.445669e-05  max resid 4.8088e-05 
## ... Similar to previous best
## Run 418 stress 0.03162101 
## ... Procrustes: rmse 1.808462e-05  max resid 4.103803e-05 
## ... Similar to previous best
## Run 419 stress 0.031621 
## ... Procrustes: rmse 8.829855e-06  max resid 2.119028e-05 
## ... Similar to previous best
## Run 420 stress 0.03162101 
## ... Procrustes: rmse 4.286106e-05  max resid 0.0001008094 
## ... Similar to previous best
## Run 421 stress 0.03162104 
## ... Procrustes: rmse 7.132153e-05  max resid 0.0001328754 
## ... Similar to previous best
## Run 422 stress 0.1187655 
## Run 423 stress 0.031621 
## ... Procrustes: rmse 4.733798e-06  max resid 8.81212e-06 
## ... Similar to previous best
## Run 424 stress 0.031621 
## ... Procrustes: rmse 7.051411e-06  max resid 1.513595e-05 
## ... Similar to previous best
## Run 425 stress 0.03162101 
## ... Procrustes: rmse 1.71846e-05  max resid 3.58615e-05 
## ... Similar to previous best
## Run 426 stress 0.03162103 
## ... Procrustes: rmse 6.184984e-05  max resid 0.0001470515 
## ... Similar to previous best
## Run 427 stress 0.03162103 
## ... Procrustes: rmse 6.764087e-05  max resid 0.0001066761 
## ... Similar to previous best
## Run 428 stress 0.031621 
## ... Procrustes: rmse 1.050971e-05  max resid 2.248725e-05 
## ... Similar to previous best
## Run 429 stress 0.031621 
## ... Procrustes: rmse 8.436339e-06  max resid 2.018814e-05 
## ... Similar to previous best
## Run 430 stress 0.031621 
## ... Procrustes: rmse 1.481083e-05  max resid 3.663471e-05 
## ... Similar to previous best
## Run 431 stress 0.1981674 
## Run 432 stress 0.031621 
## ... Procrustes: rmse 9.292965e-06  max resid 2.135687e-05 
## ... Similar to previous best
## Run 433 stress 0.03162104 
## ... Procrustes: rmse 6.653549e-05  max resid 0.0001516225 
## ... Similar to previous best
## Run 434 stress 0.1191515 
## Run 435 stress 0.1187656 
## Run 436 stress 0.031621 
## ... Procrustes: rmse 1.263866e-05  max resid 2.946114e-05 
## ... Similar to previous best
## Run 437 stress 0.031621 
## ... Procrustes: rmse 2.837541e-05  max resid 6.02999e-05 
## ... Similar to previous best
## Run 438 stress 0.031621 
## ... Procrustes: rmse 8.623581e-06  max resid 1.394611e-05 
## ... Similar to previous best
## Run 439 stress 0.03162103 
## ... Procrustes: rmse 5.309177e-05  max resid 0.0001223542 
## ... Similar to previous best
## Run 440 stress 0.1191515 
## Run 441 stress 0.03162101 
## ... Procrustes: rmse 2.423854e-05  max resid 5.72003e-05 
## ... Similar to previous best
## Run 442 stress 0.03162102 
## ... Procrustes: rmse 4.980344e-05  max resid 0.0001201066 
## ... Similar to previous best
## Run 443 stress 0.03162102 
## ... Procrustes: rmse 4.985856e-05  max resid 9.864567e-05 
## ... Similar to previous best
## Run 444 stress 0.03162102 
## ... Procrustes: rmse 4.727516e-05  max resid 0.000110797 
## ... Similar to previous best
## Run 445 stress 0.03162101 
## ... Procrustes: rmse 2.166502e-05  max resid 5.249332e-05 
## ... Similar to previous best
## Run 446 stress 0.031621 
## ... Procrustes: rmse 6.516198e-06  max resid 1.007774e-05 
## ... Similar to previous best
## Run 447 stress 0.031621 
## ... Procrustes: rmse 2.105303e-05  max resid 3.698335e-05 
## ... Similar to previous best
## Run 448 stress 0.03162106 
## ... Procrustes: rmse 2.053263e-05  max resid 4.111035e-05 
## ... Similar to previous best
## Run 449 stress 0.03162101 
## ... Procrustes: rmse 4.331772e-05  max resid 0.0001015884 
## ... Similar to previous best
## Run 450 stress 0.03162101 
## ... Procrustes: rmse 4.014086e-05  max resid 9.54383e-05 
## ... Similar to previous best
## Run 451 stress 0.03162101 
## ... Procrustes: rmse 2.797738e-05  max resid 6.482225e-05 
## ... Similar to previous best
## Run 452 stress 0.1981674 
## Run 453 stress 0.031621 
## ... Procrustes: rmse 2.095874e-05  max resid 4.411171e-05 
## ... Similar to previous best
## Run 454 stress 0.03162102 
## ... Procrustes: rmse 4.857097e-05  max resid 0.0001012631 
## ... Similar to previous best
## Run 455 stress 0.031621 
## ... Procrustes: rmse 9.290421e-06  max resid 1.941019e-05 
## ... Similar to previous best
## Run 456 stress 0.03162103 
## ... Procrustes: rmse 5.770344e-05  max resid 9.278231e-05 
## ... Similar to previous best
## Run 457 stress 0.031621 
## ... Procrustes: rmse 1.418104e-05  max resid 2.813042e-05 
## ... Similar to previous best
## Run 458 stress 0.3551196 
## Run 459 stress 0.031621 
## ... Procrustes: rmse 4.768334e-06  max resid 1.042157e-05 
## ... Similar to previous best
## Run 460 stress 0.03162101 
## ... Procrustes: rmse 2.666896e-05  max resid 6.374656e-05 
## ... Similar to previous best
## Run 461 stress 0.03162101 
## ... Procrustes: rmse 2.762262e-05  max resid 6.761691e-05 
## ... Similar to previous best
## Run 462 stress 0.031621 
## ... Procrustes: rmse 1.980825e-05  max resid 3.85288e-05 
## ... Similar to previous best
## Run 463 stress 0.031621 
## ... Procrustes: rmse 8.564702e-06  max resid 1.723468e-05 
## ... Similar to previous best
## Run 464 stress 0.03162101 
## ... Procrustes: rmse 2.943471e-05  max resid 6.96396e-05 
## ... Similar to previous best
## Run 465 stress 0.031621 
## ... Procrustes: rmse 1.15259e-05  max resid 3.194703e-05 
## ... Similar to previous best
## Run 466 stress 0.031621 
## ... Procrustes: rmse 1.820387e-05  max resid 3.601195e-05 
## ... Similar to previous best
## Run 467 stress 0.03162101 
## ... Procrustes: rmse 3.777593e-05  max resid 9.030726e-05 
## ... Similar to previous best
## Run 468 stress 0.031621 
## ... Procrustes: rmse 7.360897e-06  max resid 1.222906e-05 
## ... Similar to previous best
## Run 469 stress 0.031621 
## ... Procrustes: rmse 2.643158e-05  max resid 6.412723e-05 
## ... Similar to previous best
## Run 470 stress 0.03162101 
## ... Procrustes: rmse 1.757695e-05  max resid 4.141898e-05 
## ... Similar to previous best
## Run 471 stress 0.031621 
## ... Procrustes: rmse 1.45417e-05  max resid 3.278287e-05 
## ... Similar to previous best
## Run 472 stress 0.031621 
## ... Procrustes: rmse 6.461951e-06  max resid 1.31722e-05 
## ... Similar to previous best
## Run 473 stress 0.03162102 
## ... Procrustes: rmse 5.075325e-05  max resid 8.010106e-05 
## ... Similar to previous best
## Run 474 stress 0.031621 
## ... Procrustes: rmse 8.208959e-06  max resid 1.809015e-05 
## ... Similar to previous best
## Run 475 stress 0.031621 
## ... Procrustes: rmse 1.142672e-05  max resid 2.244924e-05 
## ... Similar to previous best
## Run 476 stress 0.03162104 
## ... Procrustes: rmse 6.092277e-05  max resid 0.0001195763 
## ... Similar to previous best
## Run 477 stress 0.031621 
## ... Procrustes: rmse 6.852705e-06  max resid 1.781141e-05 
## ... Similar to previous best
## Run 478 stress 0.03162103 
## ... Procrustes: rmse 5.651094e-05  max resid 0.00013569 
## ... Similar to previous best
## Run 479 stress 0.031621 
## ... Procrustes: rmse 2.658169e-05  max resid 6.652512e-05 
## ... Similar to previous best
## Run 480 stress 0.03162101 
## ... Procrustes: rmse 2.894324e-05  max resid 6.720548e-05 
## ... Similar to previous best
## Run 481 stress 0.031621 
## ... Procrustes: rmse 1.201014e-05  max resid 1.902254e-05 
## ... Similar to previous best
## Run 482 stress 0.031621 
## ... Procrustes: rmse 9.446478e-06  max resid 1.951894e-05 
## ... Similar to previous best
## Run 483 stress 0.1187659 
## Run 484 stress 0.031621 
## ... Procrustes: rmse 8.469874e-06  max resid 1.857212e-05 
## ... Similar to previous best
## Run 485 stress 0.031621 
## ... Procrustes: rmse 1.183276e-05  max resid 2.759344e-05 
## ... Similar to previous best
## Run 486 stress 0.03162101 
## ... Procrustes: rmse 4.416679e-05  max resid 8.889246e-05 
## ... Similar to previous best
## Run 487 stress 0.03162101 
## ... Procrustes: rmse 3.310883e-05  max resid 7.692322e-05 
## ... Similar to previous best
## Run 488 stress 0.03162101 
## ... Procrustes: rmse 3.473826e-05  max resid 8.125015e-05 
## ... Similar to previous best
## Run 489 stress 0.031621 
## ... Procrustes: rmse 1.81563e-05  max resid 4.272676e-05 
## ... Similar to previous best
## Run 490 stress 0.03162101 
## ... Procrustes: rmse 3.896431e-05  max resid 8.084616e-05 
## ... Similar to previous best
## Run 491 stress 0.1187657 
## Run 492 stress 0.031621 
## ... Procrustes: rmse 2.338492e-05  max resid 4.431362e-05 
## ... Similar to previous best
## Run 493 stress 0.031621 
## ... Procrustes: rmse 1.381102e-05  max resid 2.728872e-05 
## ... Similar to previous best
## Run 494 stress 0.03162103 
## ... Procrustes: rmse 5.02438e-05  max resid 0.0001179799 
## ... Similar to previous best
## Run 495 stress 0.03162101 
## ... Procrustes: rmse 1.9142e-05  max resid 3.403021e-05 
## ... Similar to previous best
## Run 496 stress 0.03162102 
## ... Procrustes: rmse 5.358205e-05  max resid 9.178634e-05 
## ... Similar to previous best
## Run 497 stress 0.031621 
## ... Procrustes: rmse 1.746851e-05  max resid 3.899821e-05 
## ... Similar to previous best
## Run 498 stress 0.03162102 
## ... Procrustes: rmse 4.838475e-05  max resid 0.000100881 
## ... Similar to previous best
## Run 499 stress 0.03162102 
## ... Procrustes: rmse 5.026573e-05  max resid 9.465647e-05 
## ... Similar to previous best
## Run 500 stress 0.031621 
## ... Procrustes: rmse 1.032982e-05  max resid 2.159863e-05 
## ... Similar to previous best
## *** Best solution repeated 279 times
# Ocean sites and mixed lakes
envbom_NMDS <- metaMDS(envbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.005088109 
## Run 1 stress 0.005125002 
## ... Procrustes: rmse 0.002899176  max resid 0.006509389 
## ... Similar to previous best
## Run 2 stress 0.005092087 
## ... Procrustes: rmse 0.0003687988  max resid 0.000827035 
## ... Similar to previous best
## Run 3 stress 0.005054225 
## ... New best solution
## ... Procrustes: rmse 0.008626327  max resid 0.01882237 
## Run 4 stress 0.05243086 
## Run 5 stress 0.005054131 
## ... New best solution
## ... Procrustes: rmse 7.715502e-05  max resid 0.0001473124 
## ... Similar to previous best
## Run 6 stress 0.005065029 
## ... Procrustes: rmse 0.005731604  max resid 0.01238605 
## Run 7 stress 0.005054173 
## ... Procrustes: rmse 4.808988e-05  max resid 9.322097e-05 
## ... Similar to previous best
## Run 8 stress 0.005054161 
## ... Procrustes: rmse 3.69364e-05  max resid 7.728495e-05 
## ... Similar to previous best
## Run 9 stress 0.05243067 
## Run 10 stress 0.005054154 
## ... Procrustes: rmse 3.075589e-05  max resid 6.803173e-05 
## ... Similar to previous best
## Run 11 stress 0.005054139 
## ... Procrustes: rmse 2.377324e-05  max resid 5.599994e-05 
## ... Similar to previous best
## Run 12 stress 0.005054242 
## ... Procrustes: rmse 8.913147e-05  max resid 0.0001714414 
## ... Similar to previous best
## Run 13 stress 0.005054222 
## ... Procrustes: rmse 7.108938e-05  max resid 0.0001348719 
## ... Similar to previous best
## Run 14 stress 0.00505423 
## ... Procrustes: rmse 8.252169e-05  max resid 0.0001582232 
## ... Similar to previous best
## Run 15 stress 0.005054229 
## ... Procrustes: rmse 8.281739e-05  max resid 0.000159032 
## ... Similar to previous best
## Run 16 stress 0.05243073 
## Run 17 stress 0.00505434 
## ... Procrustes: rmse 0.001502001  max resid 0.00322352 
## ... Similar to previous best
## Run 18 stress 0.005123308 
## ... Procrustes: rmse 0.01134052  max resid 0.02493054 
## Run 19 stress 0.005054248 
## ... Procrustes: rmse 9.41449e-05  max resid 0.0001815779 
## ... Similar to previous best
## Run 20 stress 0.00505416 
## ... Procrustes: rmse 3.906524e-05  max resid 8.040733e-05 
## ... Similar to previous best
## Run 21 stress 0.05243073 
## Run 22 stress 0.05243089 
## Run 23 stress 0.05243089 
## Run 24 stress 0.005054124 
## ... New best solution
## ... Procrustes: rmse 1.749373e-05  max resid 4.251737e-05 
## ... Similar to previous best
## Run 25 stress 0.005054224 
## ... Procrustes: rmse 7.22044e-05  max resid 0.0001622062 
## ... Similar to previous best
## Run 26 stress 0.005054225 
## ... Procrustes: rmse 7.214798e-05  max resid 0.0001618414 
## ... Similar to previous best
## Run 27 stress 0.005054209 
## ... Procrustes: rmse 6.27686e-05  max resid 0.0001410466 
## ... Similar to previous best
## Run 28 stress 0.005054186 
## ... Procrustes: rmse 4.689217e-05  max resid 0.0001051023 
## ... Similar to previous best
## Run 29 stress 0.0524311 
## Run 30 stress 0.005059402 
## ... Procrustes: rmse 0.004597257  max resid 0.009895429 
## ... Similar to previous best
## Run 31 stress 0.005117474 
## ... Procrustes: rmse 0.01094148  max resid 0.02400286 
## Run 32 stress 0.005054083 
## ... New best solution
## ... Procrustes: rmse 4.204263e-05  max resid 9.478634e-05 
## ... Similar to previous best
## Run 33 stress 0.005123536 
## ... Procrustes: rmse 0.01131751  max resid 0.0248445 
## Run 34 stress 0.05243095 
## Run 35 stress 0.05243074 
## Run 36 stress 0.005062385 
## ... Procrustes: rmse 0.005212772  max resid 0.01122532 
## Run 37 stress 0.005054184 
## ... Procrustes: rmse 8.851716e-05  max resid 0.0001991554 
## ... Similar to previous best
## Run 38 stress 0.005054194 
## ... Procrustes: rmse 9.420253e-05  max resid 0.0002117475 
## ... Similar to previous best
## Run 39 stress 0.005054157 
## ... Procrustes: rmse 6.917544e-05  max resid 0.0001557887 
## ... Similar to previous best
## Run 40 stress 0.005054232 
## ... Procrustes: rmse 0.0001186899  max resid 0.000266887 
## ... Similar to previous best
## Run 41 stress 0.353205 
## Run 42 stress 0.005055532 
## ... Procrustes: rmse 0.003185518  max resid 0.006831271 
## ... Similar to previous best
## Run 43 stress 0.005060555 
## ... Procrustes: rmse 0.004828228  max resid 0.01039114 
## Run 44 stress 0.00505417 
## ... Procrustes: rmse 7.861471e-05  max resid 0.000176904 
## ... Similar to previous best
## Run 45 stress 0.005089771 
## ... Procrustes: rmse 0.008603595  max resid 0.01875555 
## Run 46 stress 0.00505426 
## ... Procrustes: rmse 0.0001345309  max resid 0.0003024657 
## ... Similar to previous best
## Run 47 stress 0.005054154 
## ... Procrustes: rmse 6.633342e-05  max resid 0.0001494361 
## ... Similar to previous best
## Run 48 stress 0.005110793 
## ... Procrustes: rmse 0.01041828  max resid 0.02282806 
## Run 49 stress 0.05243098 
## Run 50 stress 0.00505428 
## ... Procrustes: rmse 0.0001393166  max resid 0.0003137533 
## ... Similar to previous best
## Run 51 stress 0.005055774 
## ... Procrustes: rmse 0.003324946  max resid 0.007134057 
## ... Similar to previous best
## Run 52 stress 0.05243084 
## Run 53 stress 0.005112415 
## ... Procrustes: rmse 0.01053927  max resid 0.0230995 
## Run 54 stress 0.005054169 
## ... Procrustes: rmse 7.512598e-05  max resid 0.0001693547 
## ... Similar to previous best
## Run 55 stress 0.005054194 
## ... Procrustes: rmse 9.47794e-05  max resid 0.0002131024 
## ... Similar to previous best
## Run 56 stress 0.005060115 
## ... Procrustes: rmse 0.004726201  max resid 0.01017068 
## Run 57 stress 0.005066388 
## ... Procrustes: rmse 0.005919796  max resid 0.01275863 
## Run 58 stress 0.005068349 
## ... Procrustes: rmse 0.006221396  max resid 0.01341754 
## Run 59 stress 0.00505427 
## ... Procrustes: rmse 0.0001362505  max resid 0.0003067884 
## ... Similar to previous best
## Run 60 stress 0.00506582 
## ... Procrustes: rmse 0.005828336  max resid 0.01255826 
## Run 61 stress 0.05243114 
## Run 62 stress 0.005065914 
## ... Procrustes: rmse 0.005836974  max resid 0.01257773 
## Run 63 stress 0.005056119 
## ... Procrustes: rmse 0.003493178  max resid 0.007498571 
## ... Similar to previous best
## Run 64 stress 0.005120313 
## ... Procrustes: rmse 0.01109881  max resid 0.02435436 
## Run 65 stress 0.05243079 
## Run 66 stress 0.005054176 
## ... Procrustes: rmse 8.234607e-05  max resid 0.0001854138 
## ... Similar to previous best
## Run 67 stress 0.005054225 
## ... Procrustes: rmse 0.0001124449  max resid 0.0002525262 
## ... Similar to previous best
## Run 68 stress 0.005107008 
## ... Procrustes: rmse 0.01013359  max resid 0.02218976 
## Run 69 stress 0.005054213 
## ... Procrustes: rmse 0.0001058128  max resid 0.0002377066 
## ... Similar to previous best
## Run 70 stress 0.05243081 
## Run 71 stress 0.005054258 
## ... Procrustes: rmse 0.0001338184  max resid 0.0003009845 
## ... Similar to previous best
## Run 72 stress 0.005101371 
## ... Procrustes: rmse 0.009685922  max resid 0.02118637 
## Run 73 stress 0.005054178 
## ... Procrustes: rmse 8.304718e-05  max resid 0.0001866161 
## ... Similar to previous best
## Run 74 stress 0.3531018 
## Run 75 stress 0.005127047 
## ... Procrustes: rmse 0.01154399  max resid 0.02535075 
## Run 76 stress 0.005096157 
## ... Procrustes: rmse 0.009250418  max resid 0.02020836 
## Run 77 stress 0.052431 
## Run 78 stress 0.005054219 
## ... Procrustes: rmse 0.0001108059  max resid 0.0002492948 
## ... Similar to previous best
## Run 79 stress 0.005054131 
## ... Procrustes: rmse 0.0006429653  max resid 0.001438124 
## ... Similar to previous best
## Run 80 stress 0.005116186 
## ... Procrustes: rmse 0.0108096  max resid 0.02370615 
## Run 81 stress 0.05243101 
## Run 82 stress 0.00505755 
## ... Procrustes: rmse 0.004032048  max resid 0.008666626 
## ... Similar to previous best
## Run 83 stress 0.05243107 
## Run 84 stress 0.05243101 
## Run 85 stress 0.005078512 
## ... Procrustes: rmse 0.007522418  max resid 0.01633265 
## Run 86 stress 0.005054219 
## ... Procrustes: rmse 0.0001111736  max resid 0.0002501498 
## ... Similar to previous best
## Run 87 stress 0.005054084 
## ... Procrustes: rmse 8.267743e-07  max resid 2.083359e-06 
## ... Similar to previous best
## Run 88 stress 0.05243062 
## Run 89 stress 0.005086029 
## ... Procrustes: rmse 0.008315872  max resid 0.01811212 
## Run 90 stress 0.05243091 
## Run 91 stress 0.005118779 
## ... Procrustes: rmse 0.01095071  max resid 0.02402048 
## Run 92 stress 0.005058504 
## ... Procrustes: rmse 0.004308292  max resid 0.009265863 
## ... Similar to previous best
## Run 93 stress 0.005054201 
## ... Procrustes: rmse 9.917223e-05  max resid 0.0002229909 
## ... Similar to previous best
## Run 94 stress 0.005054166 
## ... Procrustes: rmse 7.591163e-05  max resid 0.0001707877 
## ... Similar to previous best
## Run 95 stress 0.05243092 
## Run 96 stress 0.3531018 
## Run 97 stress 0.005054172 
## ... Procrustes: rmse 7.990962e-05  max resid 0.0001798389 
## ... Similar to previous best
## Run 98 stress 0.005054206 
## ... Procrustes: rmse 0.0001029083  max resid 0.0002314247 
## ... Similar to previous best
## Run 99 stress 0.005054153 
## ... Procrustes: rmse 6.61301e-05  max resid 0.0001488365 
## ... Similar to previous best
## Run 100 stress 0.005054216 
## ... Procrustes: rmse 0.0001089976  max resid 0.0002450445 
## ... Similar to previous best
## Run 101 stress 0.005067044 
## ... Procrustes: rmse 0.006000418  max resid 0.01292964 
## Run 102 stress 0.005054218 
## ... Procrustes: rmse 0.0001105201  max resid 0.0002486616 
## ... Similar to previous best
## Run 103 stress 0.3437875 
## Run 104 stress 0.005054226 
## ... Procrustes: rmse 0.0001152011  max resid 0.0002591429 
## ... Similar to previous best
## Run 105 stress 0.05243118 
## Run 106 stress 0.05243099 
## Run 107 stress 0.005071075 
## ... Procrustes: rmse 0.006605831  max resid 0.01427594 
## Run 108 stress 0.005055675 
## ... Procrustes: rmse 0.003267649  max resid 0.007010087 
## ... Similar to previous best
## Run 109 stress 0.005099747 
## ... Procrustes: rmse 0.009549871  max resid 0.02088072 
## Run 110 stress 0.005054249 
## ... Procrustes: rmse 0.0001233329  max resid 0.0002767498 
## ... Similar to previous best
## Run 111 stress 0.005088328 
## ... Procrustes: rmse 0.008528514  max resid 0.01858943 
## Run 112 stress 0.005078261 
## ... Procrustes: rmse 0.007489519  max resid 0.01625917 
## Run 113 stress 0.005112175 
## ... Procrustes: rmse 0.01051387  max resid 0.02304332 
## Run 114 stress 0.05243093 
## Run 115 stress 0.05243103 
## Run 116 stress 0.005121053 
## ... Procrustes: rmse 0.01113087  max resid 0.02442458 
## Run 117 stress 0.005054167 
## ... Procrustes: rmse 7.649957e-05  max resid 0.0001722337 
## ... Similar to previous best
## Run 118 stress 0.005059726 
## ... Procrustes: rmse 0.004634215  max resid 0.009970789 
## ... Similar to previous best
## Run 119 stress 0.005108833 
## ... Procrustes: rmse 0.01027346  max resid 0.02250369 
## Run 120 stress 0.05243086 
## Run 121 stress 0.05243096 
## Run 122 stress 0.005054226 
## ... Procrustes: rmse 0.0001143907  max resid 0.0002574822 
## ... Similar to previous best
## Run 123 stress 0.00510159 
## ... Procrustes: rmse 0.009447195  max resid 0.02064333 
## Run 124 stress 0.05243087 
## Run 125 stress 0.05243084 
## Run 126 stress 0.005090093 
## ... Procrustes: rmse 0.008623159  max resid 0.0188024 
## Run 127 stress 0.005054211 
## ... Procrustes: rmse 0.0001053423  max resid 0.0002371395 
## ... Similar to previous best
## Run 128 stress 0.05243085 
## Run 129 stress 0.00512286 
## ... Procrustes: rmse 0.01126677  max resid 0.02472969 
## Run 130 stress 0.005054155 
## ... Procrustes: rmse 6.711576e-05  max resid 0.0001511932 
## ... Similar to previous best
## Run 131 stress 0.005054211 
## ... Procrustes: rmse 9.842289e-05  max resid 0.000221828 
## ... Similar to previous best
## Run 132 stress 0.05243101 
## Run 133 stress 0.05243114 
## Run 134 stress 0.005054151 
## ... Procrustes: rmse 6.447745e-05  max resid 0.0001452578 
## ... Similar to previous best
## Run 135 stress 0.005107173 
## ... Procrustes: rmse 0.01014653  max resid 0.02221882 
## Run 136 stress 0.005054186 
## ... Procrustes: rmse 8.90159e-05  max resid 0.0002001109 
## ... Similar to previous best
## Run 137 stress 0.005110297 
## ... Procrustes: rmse 0.0103642  max resid 0.02270801 
## Run 138 stress 0.005071646 
## ... Procrustes: rmse 0.006674639  max resid 0.01443106 
## Run 139 stress 0.005075514 
## ... Procrustes: rmse 0.007170395  max resid 0.0155427 
## Run 140 stress 0.005054241 
## ... Procrustes: rmse 0.000117816  max resid 0.0002643132 
## ... Similar to previous best
## Run 141 stress 0.005061316 
## ... Procrustes: rmse 0.004995042  max resid 0.01075236 
## Run 142 stress 0.06465863 
## Run 143 stress 0.005054168 
## ... Procrustes: rmse 7.434195e-05  max resid 0.0001668879 
## ... Similar to previous best
## Run 144 stress 0.05243094 
## Run 145 stress 0.0524309 
## Run 146 stress 0.005054402 
## ... Procrustes: rmse 0.001628104  max resid 0.003439286 
## ... Similar to previous best
## Run 147 stress 0.005054166 
## ... Procrustes: rmse 7.590076e-05  max resid 0.0001708922 
## ... Similar to previous best
## Run 148 stress 0.005107137 
## ... Procrustes: rmse 0.01014342  max resid 0.02221217 
## Run 149 stress 0.00505424 
## ... Procrustes: rmse 0.0001188845  max resid 0.0002668323 
## ... Similar to previous best
## Run 150 stress 0.005056282 
## ... Procrustes: rmse 0.003462504  max resid 0.007430325 
## ... Similar to previous best
## Run 151 stress 0.005054114 
## ... Procrustes: rmse 3.269097e-05  max resid 7.383595e-05 
## ... Similar to previous best
## Run 152 stress 0.005054204 
## ... Procrustes: rmse 0.0001014003  max resid 0.000228057 
## ... Similar to previous best
## Run 153 stress 0.005055426 
## ... Procrustes: rmse 0.003124097  max resid 0.006698759 
## ... Similar to previous best
## Run 154 stress 0.005064525 
## ... Procrustes: rmse 0.005609046  max resid 0.01208269 
## Run 155 stress 0.005054177 
## ... Procrustes: rmse 8.100143e-05  max resid 0.0001819087 
## ... Similar to previous best
## Run 156 stress 0.005075512 
## ... Procrustes: rmse 0.007172429  max resid 0.01554748 
## Run 157 stress 0.005054209 
## ... Procrustes: rmse 0.0001032685  max resid 0.000232023 
## ... Similar to previous best
## Run 158 stress 0.005054132 
## ... Procrustes: rmse 4.84698e-05  max resid 0.0001093162 
## ... Similar to previous best
## Run 159 stress 0.005054132 
## ... Procrustes: rmse 4.713081e-05  max resid 0.000105871 
## ... Similar to previous best
## Run 160 stress 0.06376753 
## Run 161 stress 0.052431 
## Run 162 stress 0.005054217 
## ... Procrustes: rmse 0.0001063946  max resid 0.0002388619 
## ... Similar to previous best
## Run 163 stress 0.005055477 
## ... Procrustes: rmse 0.00315844  max resid 0.006773023 
## ... Similar to previous best
## Run 164 stress 0.005054226 
## ... Procrustes: rmse 0.0001155252  max resid 0.0002598566 
## ... Similar to previous best
## Run 165 stress 0.005054219 
## ... Procrustes: rmse 0.0001112187  max resid 0.0002501906 
## ... Similar to previous best
## Run 166 stress 0.005054202 
## ... Procrustes: rmse 9.999657e-05  max resid 0.0002251115 
## ... Similar to previous best
## Run 167 stress 0.005054169 
## ... Procrustes: rmse 7.787425e-05  max resid 0.0001753306 
## ... Similar to previous best
## Run 168 stress 0.05243072 
## Run 169 stress 0.005054232 
## ... Procrustes: rmse 0.0001187099  max resid 0.0002668458 
## ... Similar to previous best
## Run 170 stress 0.005054257 
## ... Procrustes: rmse 0.0001309194  max resid 0.0002940419 
## ... Similar to previous best
## Run 171 stress 0.005069882 
## ... Procrustes: rmse 0.006420908  max resid 0.01386165 
## Run 172 stress 0.05243065 
## Run 173 stress 0.005085572 
## ... Procrustes: rmse 0.008143312  max resid 0.01772673 
## Run 174 stress 0.005103006 
## ... Procrustes: rmse 0.00981958  max resid 0.02148541 
## Run 175 stress 0.005118166 
## ... Procrustes: rmse 0.01090479  max resid 0.02392055 
## Run 176 stress 0.05243073 
## Run 177 stress 0.00512091 
## ... Procrustes: rmse 0.0111417  max resid 0.02444989 
## Run 178 stress 0.005054187 
## ... Procrustes: rmse 8.994665e-05  max resid 0.0002025403 
## ... Similar to previous best
## Run 179 stress 0.005088414 
## ... Procrustes: rmse 0.008546448  max resid 0.01862933 
## Run 180 stress 0.05243062 
## Run 181 stress 0.005054151 
## ... Procrustes: rmse 6.406633e-05  max resid 0.0001440898 
## ... Similar to previous best
## Run 182 stress 0.005054183 
## ... Procrustes: rmse 8.761697e-05  max resid 0.0001972061 
## ... Similar to previous best
## Run 183 stress 0.00505407 
## ... New best solution
## ... Procrustes: rmse 1.816451e-05  max resid 3.987925e-05 
## ... Similar to previous best
## Run 184 stress 0.005054168 
## ... Procrustes: rmse 9.545796e-05  max resid 0.0002138733 
## ... Similar to previous best
## Run 185 stress 0.005089553 
## ... Procrustes: rmse 0.008635901  max resid 0.01883017 
## Run 186 stress 0.005110447 
## ... Procrustes: rmse 0.01037395  max resid 0.02272936 
## Run 187 stress 0.05243086 
## Run 188 stress 0.00506254 
## ... Procrustes: rmse 0.005226267  max resid 0.01125377 
## Run 189 stress 0.00506044 
## ... Procrustes: rmse 0.004774464  max resid 0.01027499 
## Run 190 stress 0.05243129 
## Run 191 stress 0.06376734 
## Run 192 stress 0.005084873 
## ... Procrustes: rmse 0.008134456  max resid 0.01770475 
## Run 193 stress 0.05243068 
## Run 194 stress 0.005054266 
## ... Procrustes: rmse 0.000151446  max resid 0.000339049 
## ... Similar to previous best
## Run 195 stress 0.005057626 
## ... Procrustes: rmse 0.004038434  max resid 0.008679514 
## ... Similar to previous best
## Run 196 stress 0.005076015 
## ... Procrustes: rmse 0.007213795  max resid 0.01564092 
## Run 197 stress 0.005107757 
## ... Procrustes: rmse 0.01017006  max resid 0.0222721 
## Run 198 stress 0.05243078 
## Run 199 stress 0.00508237 
## ... Procrustes: rmse 0.007916018  max resid 0.0172156 
## Run 200 stress 0.06337814 
## Run 201 stress 0.005054227 
## ... Procrustes: rmse 0.0001340535  max resid 0.0003006241 
## ... Similar to previous best
## Run 202 stress 0.005101671 
## ... Procrustes: rmse 0.009693814  max resid 0.02120402 
## Run 203 stress 0.005054243 
## ... Procrustes: rmse 0.0001428595  max resid 0.0003201637 
## ... Similar to previous best
## Run 204 stress 0.05243098 
## Run 205 stress 0.005054268 
## ... Procrustes: rmse 0.0001568895  max resid 0.0003517392 
## ... Similar to previous best
## Run 206 stress 0.005054177 
## ... Procrustes: rmse 0.0001016271  max resid 0.0002276947 
## ... Similar to previous best
## Run 207 stress 0.005054253 
## ... Procrustes: rmse 0.0001488207  max resid 0.0003336799 
## ... Similar to previous best
## Run 208 stress 0.005055769 
## ... Procrustes: rmse 0.003297824  max resid 0.007074059 
## ... Similar to previous best
## Run 209 stress 0.0524307 
## Run 210 stress 0.005118428 
## ... Procrustes: rmse 0.01095234  max resid 0.02402659 
## Run 211 stress 0.005099182 
## ... Procrustes: rmse 0.009371287  max resid 0.02048225 
## Run 212 stress 0.005055518 
## ... Procrustes: rmse 0.003164931  max resid 0.00678675 
## ... Similar to previous best
## Run 213 stress 0.2027814 
## Run 214 stress 0.0633782 
## Run 215 stress 0.005110454 
## ... Procrustes: rmse 0.01037732  max resid 0.0227373 
## Run 216 stress 0.005105911 
## ... Procrustes: rmse 0.009991172  max resid 0.02187311 
## Run 217 stress 0.005073428 
## ... Procrustes: rmse 0.006893216  max resid 0.01492151 
## Run 218 stress 0.005054212 
## ... Procrustes: rmse 0.0001246801  max resid 0.0002795758 
## ... Similar to previous best
## Run 219 stress 0.005070988 
## ... Procrustes: rmse 0.006575988  max resid 0.01420998 
## Run 220 stress 0.005065208 
## ... Procrustes: rmse 0.005701781  max resid 0.01228236 
## Run 221 stress 0.005054169 
## ... Procrustes: rmse 9.536935e-05  max resid 0.0002132572 
## ... Similar to previous best
## Run 222 stress 0.00505423 
## ... Procrustes: rmse 0.0001261941  max resid 0.0002834361 
## ... Similar to previous best
## Run 223 stress 0.005058586 
## ... Procrustes: rmse 0.004322489  max resid 0.009295212 
## ... Similar to previous best
## Run 224 stress 0.05243107 
## Run 225 stress 0.00505577 
## ... Procrustes: rmse 0.003298363  max resid 0.007076075 
## ... Similar to previous best
## Run 226 stress 0.005054095 
## ... Procrustes: rmse 3.133047e-05  max resid 6.977069e-05 
## ... Similar to previous best
## Run 227 stress 0.005109088 
## ... Procrustes: rmse 0.0102746  max resid 0.02250689 
## Run 228 stress 0.005056039 
## ... Procrustes: rmse 0.003437952  max resid 0.007378302 
## ... Similar to previous best
## Run 229 stress 0.005054245 
## ... Procrustes: rmse 0.0001389552  max resid 0.0003120267 
## ... Similar to previous best
## Run 230 stress 0.005054167 
## ... Procrustes: rmse 8.98095e-05  max resid 0.0002015333 
## ... Similar to previous best
## Run 231 stress 0.005054091 
## ... Procrustes: rmse 2.716238e-05  max resid 6.041963e-05 
## ... Similar to previous best
## Run 232 stress 0.005054241 
## ... Procrustes: rmse 0.0001417859  max resid 0.0003178234 
## ... Similar to previous best
## Run 233 stress 0.005069264 
## ... Procrustes: rmse 0.006298443  max resid 0.01358597 
## Run 234 stress 0.005055611 
## ... Procrustes: rmse 0.00321673  max resid 0.006898454 
## ... Similar to previous best
## Run 235 stress 0.005054253 
## ... Procrustes: rmse 0.0001427363  max resid 0.0003205551 
## ... Similar to previous best
## Run 236 stress 0.3531018 
## Run 237 stress 0.005055927 
## ... Procrustes: rmse 0.003354838  max resid 0.00719718 
## ... Similar to previous best
## Run 238 stress 0.05243089 
## Run 239 stress 0.005061784 
## ... Procrustes: rmse 0.00498197  max resid 0.01072095 
## Run 240 stress 0.005054166 
## ... Procrustes: rmse 9.045886e-05  max resid 0.0002021769 
## ... Similar to previous best
## Run 241 stress 0.005054129 
## ... Procrustes: rmse 6.480934e-05  max resid 0.0001450625 
## ... Similar to previous best
## Run 242 stress 0.005054109 
## ... Procrustes: rmse 4.556232e-05  max resid 0.0001016456 
## ... Similar to previous best
## Run 243 stress 0.005062024 
## ... Procrustes: rmse 0.005123939  max resid 0.01103119 
## Run 244 stress 0.005054167 
## ... Procrustes: rmse 9.45266e-05  max resid 0.0002118228 
## ... Similar to previous best
## Run 245 stress 0.005054241 
## ... Procrustes: rmse 0.0001422048  max resid 0.0003189215 
## ... Similar to previous best
## Run 246 stress 0.005103426 
## ... Procrustes: rmse 0.009824388  max resid 0.02149795 
## Run 247 stress 0.005054266 
## ... Procrustes: rmse 0.000152364  max resid 0.0003421049 
## ... Similar to previous best
## Run 248 stress 0.005122746 
## ... Procrustes: rmse 0.01124942  max resid 0.02469233 
## Run 249 stress 0.005054195 
## ... Procrustes: rmse 0.0001097485  max resid 0.0002463299 
## ... Similar to previous best
## Run 250 stress 0.00512159 
## ... Procrustes: rmse 0.0111648  max resid 0.0245032 
## Run 251 stress 0.005077994 
## ... Procrustes: rmse 0.007407298  max resid 0.01607417 
## Run 252 stress 0.05243105 
## Run 253 stress 0.005054186 
## ... Procrustes: rmse 0.0001037082  max resid 0.00023276 
## ... Similar to previous best
## Run 254 stress 0.05243105 
## Run 255 stress 0.005054191 
## ... Procrustes: rmse 0.0001055792  max resid 0.0002359868 
## ... Similar to previous best
## Run 256 stress 0.005054137 
## ... Procrustes: rmse 7.034412e-05  max resid 0.0001572625 
## ... Similar to previous best
## Run 257 stress 0.3335291 
## Run 258 stress 0.005054209 
## ... Procrustes: rmse 0.0001185302  max resid 0.0002660918 
## ... Similar to previous best
## Run 259 stress 0.0524311 
## Run 260 stress 0.005097223 
## ... Procrustes: rmse 0.009323997  max resid 0.02037428 
## Run 261 stress 0.005054253 
## ... Procrustes: rmse 0.0001489922  max resid 0.0003341914 
## ... Similar to previous best
## Run 262 stress 0.05243072 
## Run 263 stress 0.05243072 
## Run 264 stress 0.005110452 
## ... Procrustes: rmse 0.0103762  max resid 0.02273458 
## Run 265 stress 0.05243102 
## Run 266 stress 0.005106842 
## ... Procrustes: rmse 0.01009698  max resid 0.02210909 
## Run 267 stress 0.005054184 
## ... Procrustes: rmse 0.0001063393  max resid 0.0002383719 
## ... Similar to previous best
## Run 268 stress 0.005054237 
## ... Procrustes: rmse 0.0001374666  max resid 0.0003078211 
## ... Similar to previous best
## Run 269 stress 0.005057422 
## ... Procrustes: rmse 0.003972629  max resid 0.008537091 
## ... Similar to previous best
## Run 270 stress 0.05243073 
## Run 271 stress 0.05243109 
## Run 272 stress 0.005054234 
## ... Procrustes: rmse 0.0001380387  max resid 0.000309398 
## ... Similar to previous best
## Run 273 stress 0.05243104 
## Run 274 stress 0.052431 
## Run 275 stress 0.05243063 
## Run 276 stress 0.005095767 
## ... Procrustes: rmse 0.009193886  max resid 0.02008331 
## Run 277 stress 0.005054269 
## ... Procrustes: rmse 0.0001553897  max resid 0.0003488486 
## ... Similar to previous best
## Run 278 stress 0.005054241 
## ... Procrustes: rmse 0.0001380028  max resid 0.000309857 
## ... Similar to previous best
## Run 279 stress 0.0050542 
## ... Procrustes: rmse 0.0001158554  max resid 0.0002599304 
## ... Similar to previous best
## Run 280 stress 0.005113254 
## ... Procrustes: rmse 0.01058335  max resid 0.02319915 
## Run 281 stress 0.005054237 
## ... Procrustes: rmse 0.0001348728  max resid 0.0003018347 
## ... Similar to previous best
## Run 282 stress 0.005096134 
## ... Procrustes: rmse 0.00923039  max resid 0.02016438 
## Run 283 stress 0.005054187 
## ... Procrustes: rmse 0.0001057113  max resid 0.0002365132 
## ... Similar to previous best
## Run 284 stress 0.005055559 
## ... Procrustes: rmse 0.003188924  max resid 0.006838498 
## ... Similar to previous best
## Run 285 stress 0.005054235 
## ... Procrustes: rmse 0.0001380682  max resid 0.0003093713 
## ... Similar to previous best
## Run 286 stress 0.005054119 
## ... Procrustes: rmse 5.58397e-05  max resid 0.0001247772 
## ... Similar to previous best
## Run 287 stress 0.005054229 
## ... Procrustes: rmse 0.0001353727  max resid 0.0003034743 
## ... Similar to previous best
## Run 288 stress 0.00511006 
## ... Procrustes: rmse 0.01034755  max resid 0.0226713 
## Run 289 stress 0.00505422 
## ... Procrustes: rmse 0.0001261642  max resid 0.0002823828 
## ... Similar to previous best
## Run 290 stress 0.005054131 
## ... Procrustes: rmse 6.427024e-05  max resid 0.0001643459 
## ... Similar to previous best
## Run 291 stress 0.052431 
## Run 292 stress 0.005111965 
## ... Procrustes: rmse 0.01046993  max resid 0.022944 
## Run 293 stress 0.00509695 
## ... Procrustes: rmse 0.009283382  max resid 0.02028268 
## Run 294 stress 0.005104989 
## ... Procrustes: rmse 0.009955867  max resid 0.02179263 
## Run 295 stress 0.005085211 
## ... Procrustes: rmse 0.00821582  max resid 0.01788855 
## Run 296 stress 0.06337842 
## Run 297 stress 0.005097615 
## ... Procrustes: rmse 0.009347867  max resid 0.02042841 
## Run 298 stress 0.005054154 
## ... Procrustes: rmse 8.398295e-05  max resid 0.0001879267 
## ... Similar to previous best
## Run 299 stress 0.0524307 
## Run 300 stress 0.005054144 
## ... Procrustes: rmse 7.575709e-05  max resid 0.0001697968 
## ... Similar to previous best
## Run 301 stress 0.005060467 
## ... Procrustes: rmse 0.004783581  max resid 0.01029332 
## Run 302 stress 0.005054226 
## ... Procrustes: rmse 0.0001336391  max resid 0.0002996029 
## ... Similar to previous best
## Run 303 stress 0.005116438 
## ... Procrustes: rmse 0.01081192  max resid 0.02371188 
## Run 304 stress 0.005070189 
## ... Procrustes: rmse 0.006463795  max resid 0.01395776 
## Run 305 stress 0.005086501 
## ... Procrustes: rmse 0.008302532  max resid 0.01808407 
## Run 306 stress 0.005134687 
## ... Procrustes: rmse 0.01200185  max resid 0.02637651 
## Run 307 stress 0.005066231 
## ... Procrustes: rmse 0.005876989  max resid 0.01266334 
## Run 308 stress 0.00509281 
## ... Procrustes: rmse 0.008898031  max resid 0.01941547 
## Run 309 stress 0.00509896 
## ... Procrustes: rmse 0.009467168  max resid 0.02069598 
## Run 310 stress 0.00505425 
## ... Procrustes: rmse 0.0001438288  max resid 0.0003220605 
## ... Similar to previous best
## Run 311 stress 0.005054191 
## ... Procrustes: rmse 0.0001114826  max resid 0.0002498581 
## ... Similar to previous best
## Run 312 stress 0.005054268 
## ... Procrustes: rmse 0.0001531053  max resid 0.0003438038 
## ... Similar to previous best
## Run 313 stress 0.005054198 
## ... Procrustes: rmse 0.000115541  max resid 0.0002590928 
## ... Similar to previous best
## Run 314 stress 0.005079171 
## ... Procrustes: rmse 0.007564144  max resid 0.01642752 
## Run 315 stress 0.005118329 
## ... Procrustes: rmse 0.01082225  max resid 0.02373707 
## Run 316 stress 0.005054151 
## ... Procrustes: rmse 8.203735e-05  max resid 0.0001835323 
## ... Similar to previous best
## Run 317 stress 0.05243085 
## Run 318 stress 0.005061418 
## ... Procrustes: rmse 0.004999367  max resid 0.01076137 
## Run 319 stress 0.005063375 
## ... Procrustes: rmse 0.005384565  max resid 0.01159634 
## Run 320 stress 0.005063394 
## ... Procrustes: rmse 0.0053859  max resid 0.01159823 
## Run 321 stress 0.005097959 
## ... Procrustes: rmse 0.009386485  max resid 0.0205145 
## Run 322 stress 0.05243113 
## Run 323 stress 0.005054177 
## ... Procrustes: rmse 0.0001015621  max resid 0.0002276492 
## ... Similar to previous best
## Run 324 stress 0.00511202 
## ... Procrustes: rmse 0.01049334  max resid 0.02299755 
## Run 325 stress 0.005054181 
## ... Procrustes: rmse 0.0001046555  max resid 0.0002344589 
## ... Similar to previous best
## Run 326 stress 0.005054218 
## ... Procrustes: rmse 0.0001281005  max resid 0.000287298 
## ... Similar to previous best
## Run 327 stress 0.005054237 
## ... Procrustes: rmse 0.0001398391  max resid 0.0003135999 
## ... Similar to previous best
## Run 328 stress 0.005055522 
## ... Procrustes: rmse 0.00316767  max resid 0.006792366 
## ... Similar to previous best
## Run 329 stress 0.05243093 
## Run 330 stress 0.0524307 
## Run 331 stress 0.00511562 
## ... Procrustes: rmse 0.01074146  max resid 0.02355482 
## Run 332 stress 0.005054092 
## ... Procrustes: rmse 2.878279e-05  max resid 6.401527e-05 
## ... Similar to previous best
## Run 333 stress 0.05243103 
## Run 334 stress 0.005054193 
## ... Procrustes: rmse 0.0001085944  max resid 0.0002428937 
## ... Similar to previous best
## Run 335 stress 0.005054143 
## ... Procrustes: rmse 7.645842e-05  max resid 0.0001712438 
## ... Similar to previous best
## Run 336 stress 0.005065722 
## ... Procrustes: rmse 0.005726815  max resid 0.01233883 
## Run 337 stress 0.00506689 
## ... Procrustes: rmse 0.00598101  max resid 0.01288991 
## Run 338 stress 0.05243115 
## Run 339 stress 0.05243077 
## Run 340 stress 0.005076034 
## ... Procrustes: rmse 0.0072152  max resid 0.0156444 
## Run 341 stress 0.005054178 
## ... Procrustes: rmse 0.0001013582  max resid 0.0002273289 
## ... Similar to previous best
## Run 342 stress 0.005054199 
## ... Procrustes: rmse 0.00011078  max resid 0.0002476391 
## ... Similar to previous best
## Run 343 stress 0.005054087 
## ... Procrustes: rmse 2.205534e-05  max resid 4.895037e-05 
## ... Similar to previous best
## Run 344 stress 0.005054144 
## ... Procrustes: rmse 7.733124e-05  max resid 0.0001730859 
## ... Similar to previous best
## Run 345 stress 0.005054179 
## ... Procrustes: rmse 0.0001021613  max resid 0.0002287022 
## ... Similar to previous best
## Run 346 stress 0.005054274 
## ... Procrustes: rmse 0.0001551161  max resid 0.0003472484 
## ... Similar to previous best
## Run 347 stress 0.00505425 
## ... Procrustes: rmse 0.0001448265  max resid 0.0003251159 
## ... Similar to previous best
## Run 348 stress 0.005054069 
## ... New best solution
## ... Procrustes: rmse 0.00029802  max resid 0.0006834959 
## ... Similar to previous best
## Run 349 stress 0.05243064 
## Run 350 stress 0.005054195 
## ... Procrustes: rmse 0.0004117969  max resid 0.0009394717 
## ... Similar to previous best
## Run 351 stress 0.05243067 
## Run 352 stress 0.005054281 
## ... Procrustes: rmse 0.00045634  max resid 0.001039226 
## ... Similar to previous best
## Run 353 stress 0.005074916 
## ... Procrustes: rmse 0.006412969  max resid 0.01382953 
## Run 354 stress 0.005084149 
## ... Procrustes: rmse 0.00780974  max resid 0.01696153 
## Run 355 stress 0.05243062 
## Run 356 stress 0.05243106 
## Run 357 stress 0.005054197 
## ... Procrustes: rmse 0.0004125722  max resid 0.0009412704 
## ... Similar to previous best
## Run 358 stress 0.05243095 
## Run 359 stress 0.0646585 
## Run 360 stress 0.005054188 
## ... Procrustes: rmse 0.0004067662  max resid 0.0009282355 
## ... Similar to previous best
## Run 361 stress 0.005095248 
## ... Procrustes: rmse 0.008844535  max resid 0.01928353 
## Run 362 stress 0.00505422 
## ... Procrustes: rmse 0.0004232368  max resid 0.0009647524 
## ... Similar to previous best
## Run 363 stress 0.005054262 
## ... Procrustes: rmse 0.0004450569  max resid 0.001015068 
## ... Similar to previous best
## Run 364 stress 0.005098773 
## ... Procrustes: rmse 0.009141563  max resid 0.01994906 
## Run 365 stress 0.005086492 
## ... Procrustes: rmse 0.008012479  max resid 0.01741448 
## Run 366 stress 0.00510561 
## ... Procrustes: rmse 0.009703814  max resid 0.02121068 
## Run 367 stress 0.005074316 
## ... Procrustes: rmse 0.00670979  max resid 0.0144942 
## Run 368 stress 0.005055369 
## ... Procrustes: rmse 0.002771997  max resid 0.005892944 
## ... Similar to previous best
## Run 369 stress 0.00510598 
## ... Procrustes: rmse 0.009739291  max resid 0.02129091 
## Run 370 stress 0.00505421 
## ... Procrustes: rmse 0.000418079  max resid 0.000953211 
## ... Similar to previous best
## Run 371 stress 0.06376745 
## Run 372 stress 0.00505421 
## ... Procrustes: rmse 0.0004208502  max resid 0.0009599588 
## ... Similar to previous best
## Run 373 stress 0.005054102 
## ... Procrustes: rmse 0.0003363575  max resid 0.0007691991 
## ... Similar to previous best
## Run 374 stress 0.005112621 
## ... Procrustes: rmse 0.01024015  max resid 0.02241419 
## Run 375 stress 0.05243084 
## Run 376 stress 0.005080704 
## ... Procrustes: rmse 0.007449688  max resid 0.01615424 
## Run 377 stress 0.005110846 
## ... Procrustes: rmse 0.009946594  max resid 0.02175812 
## Run 378 stress 0.005121628 
## ... Procrustes: rmse 0.0108762  max resid 0.02383989 
## Run 379 stress 0.005075332 
## ... Procrustes: rmse 0.006833681  max resid 0.01477255 
## Run 380 stress 0.005065616 
## ... Procrustes: rmse 0.005477653  max resid 0.01175808 
## Run 381 stress 0.005104728 
## ... Procrustes: rmse 0.009640927  max resid 0.02107025 
## Run 382 stress 0.005054251 
## ... Procrustes: rmse 0.0004397514  max resid 0.001003082 
## ... Similar to previous best
## Run 383 stress 0.005062542 
## ... Procrustes: rmse 0.004929503  max resid 0.01057072 
## Run 384 stress 0.005129272 
## ... Procrustes: rmse 0.01138134  max resid 0.02497219 
## Run 385 stress 0.005054174 
## ... Procrustes: rmse 0.0003968319  max resid 0.0009056795 
## ... Similar to previous best
## Run 386 stress 0.00505424 
## ... Procrustes: rmse 0.0004337037  max resid 0.0009882291 
## ... Similar to previous best
## Run 387 stress 0.005054234 
## ... Procrustes: rmse 0.0004290074  max resid 0.0009776175 
## ... Similar to previous best
## Run 388 stress 0.005086332 
## ... Procrustes: rmse 0.008021259  max resid 0.01743666 
## Run 389 stress 0.005096472 
## ... Procrustes: rmse 0.008953636  max resid 0.01952894 
## Run 390 stress 0.005071314 
## ... Procrustes: rmse 0.006322002  max resid 0.01362432 
## Run 391 stress 0.005054217 
## ... Procrustes: rmse 0.0004220529  max resid 0.0009621508 
## ... Similar to previous best
## Run 392 stress 0.05243107 
## Run 393 stress 0.005094474 
## ... Procrustes: rmse 0.008783213  max resid 0.01914651 
## Run 394 stress 0.005054237 
## ... Procrustes: rmse 0.0004371312  max resid 0.0009965459 
## ... Similar to previous best
## Run 395 stress 0.05243094 
## Run 396 stress 0.005054217 
## ... Procrustes: rmse 0.0004249924  max resid 0.0009694018 
## ... Similar to previous best
## Run 397 stress 0.005084636 
## ... Procrustes: rmse 0.007861178  max resid 0.01707744 
## Run 398 stress 0.005057473 
## ... Procrustes: rmse 0.003673297  max resid 0.007850191 
## ... Similar to previous best
## Run 399 stress 0.005125241 
## ... Procrustes: rmse 0.01111954  max resid 0.02438525 
## Run 400 stress 0.005102163 
## ... Procrustes: rmse 0.009413266  max resid 0.0205585 
## Run 401 stress 0.00505416 
## ... Procrustes: rmse 0.0003871176  max resid 0.0008838599 
## ... Similar to previous best
## Run 402 stress 0.005103672 
## ... Procrustes: rmse 0.009549241  max resid 0.02086499 
## Run 403 stress 0.005114148 
## ... Procrustes: rmse 0.01031876  max resid 0.02258907 
## Run 404 stress 0.005054102 
## ... Procrustes: rmse 0.0003366528  max resid 0.0007701247 
## ... Similar to previous best
## Run 405 stress 0.06465843 
## Run 406 stress 0.005054153 
## ... Procrustes: rmse 0.000381402  max resid 0.0008711028 
## ... Similar to previous best
## Run 407 stress 0.005114387 
## ... Procrustes: rmse 0.01024964  max resid 0.02243735 
## Run 408 stress 0.005054235 
## ... Procrustes: rmse 0.0004328659  max resid 0.0009865062 
## ... Similar to previous best
## Run 409 stress 0.05243103 
## Run 410 stress 0.005067099 
## ... Procrustes: rmse 0.005716552  max resid 0.01227641 
## Run 411 stress 0.05243098 
## Run 412 stress 0.005112241 
## ... Procrustes: rmse 0.01021187  max resid 0.02235084 
## Run 413 stress 0.005073239 
## ... Procrustes: rmse 0.006548239  max resid 0.01413107 
## Run 414 stress 0.005058303 
## ... Procrustes: rmse 0.00394587  max resid 0.008439931 
## ... Similar to previous best
## Run 415 stress 0.005120911 
## ... Procrustes: rmse 0.01082138  max resid 0.02371766 
## Run 416 stress 0.005054294 
## ... Procrustes: rmse 0.0004631386  max resid 0.001055777 
## ... Similar to previous best
## Run 417 stress 0.005074804 
## ... Procrustes: rmse 0.006594439  max resid 0.01423704 
## Run 418 stress 0.005054101 
## ... Procrustes: rmse 0.0003354259  max resid 0.0007673042 
## ... Similar to previous best
## Run 419 stress 0.005054161 
## ... Procrustes: rmse 0.000387876  max resid 0.0008855409 
## ... Similar to previous best
## Run 420 stress 0.005067686 
## ... Procrustes: rmse 0.005805585  max resid 0.01247098 
## Run 421 stress 0.005065717 
## ... Procrustes: rmse 0.005446334  max resid 0.01168792 
## Run 422 stress 0.00506391 
## ... Procrustes: rmse 0.005164461  max resid 0.01107827 
## Run 423 stress 0.005054206 
## ... Procrustes: rmse 0.0004186333  max resid 0.0009549237 
## ... Similar to previous best
## Run 424 stress 0.05243097 
## Run 425 stress 0.005075502 
## ... Procrustes: rmse 0.006416693  max resid 0.01384155 
## Run 426 stress 0.005054219 
## ... Procrustes: rmse 0.0004235339  max resid 0.0009663901 
## ... Similar to previous best
## Run 427 stress 0.06465848 
## Run 428 stress 0.005116929 
## ... Procrustes: rmse 0.01055011  max resid 0.02310912 
## Run 429 stress 0.00505425 
## ... Procrustes: rmse 0.0004403896  max resid 0.001003376 
## ... Similar to previous best
## Run 430 stress 0.00505416 
## ... Procrustes: rmse 0.000387058  max resid 0.0008838029 
## ... Similar to previous best
## Run 431 stress 0.005063696 
## ... Procrustes: rmse 0.00504974  max resid 0.01082844 
## Run 432 stress 0.00505421 
## ... Procrustes: rmse 0.0004205791  max resid 0.0009595031 
## ... Similar to previous best
## Run 433 stress 0.00507444 
## ... Procrustes: rmse 0.006724862  max resid 0.01452833 
## Run 434 stress 0.05243087 
## Run 435 stress 0.005054292 
## ... Procrustes: rmse 0.0004613939  max resid 0.001050534 
## ... Similar to previous best
## Run 436 stress 0.005054257 
## ... Procrustes: rmse 0.000444071  max resid 0.001011631 
## ... Similar to previous best
## Run 437 stress 0.005075211 
## ... Procrustes: rmse 0.006817235  max resid 0.01473518 
## Run 438 stress 0.005054188 
## ... Procrustes: rmse 0.0004066945  max resid 0.0009279568 
## ... Similar to previous best
## Run 439 stress 0.005055382 
## ... Procrustes: rmse 0.002783543  max resid 0.00592062 
## ... Similar to previous best
## Run 440 stress 0.005054235 
## ... Procrustes: rmse 0.0004315557  max resid 0.0009845682 
## ... Similar to previous best
## Run 441 stress 0.05243104 
## Run 442 stress 0.005054227 
## ... Procrustes: rmse 0.0004294084  max resid 0.0009795424 
## ... Similar to previous best
## Run 443 stress 0.05243089 
## Run 444 stress 0.05243092 
## Run 445 stress 0.005054241 
## ... Procrustes: rmse 0.0004395722  max resid 0.00100216 
## ... Similar to previous best
## Run 446 stress 0.005089776 
## ... Procrustes: rmse 0.008361112  max resid 0.01819828 
## Run 447 stress 0.005054213 
## ... Procrustes: rmse 0.0004161072  max resid 0.0009488624 
## ... Similar to previous best
## Run 448 stress 0.005057771 
## ... Procrustes: rmse 0.003787091  max resid 0.00809587 
## ... Similar to previous best
## Run 449 stress 0.005055465 
## ... Procrustes: rmse 0.002835763  max resid 0.006033822 
## ... Similar to previous best
## Run 450 stress 0.005054194 
## ... Procrustes: rmse 0.0004105465  max resid 0.0009368464 
## ... Similar to previous best
## Run 451 stress 0.005054261 
## ... Procrustes: rmse 0.0004477823  max resid 0.001021053 
## ... Similar to previous best
## Run 452 stress 0.00509858 
## ... Procrustes: rmse 0.009141562  max resid 0.01994963 
## Run 453 stress 0.005054116 
## ... Procrustes: rmse 0.0003507028  max resid 0.0007999657 
## ... Similar to previous best
## Run 454 stress 0.005072887 
## ... Procrustes: rmse 0.006525341  max resid 0.0140801 
## Run 455 stress 0.005056468 
## ... Procrustes: rmse 0.003326907  max resid 0.007098751 
## ... Similar to previous best
## Run 456 stress 0.005054207 
## ... Procrustes: rmse 0.0004164543  max resid 0.0009504083 
## ... Similar to previous best
## Run 457 stress 0.00505421 
## ... Procrustes: rmse 0.000420863  max resid 0.0009599988 
## ... Similar to previous best
## Run 458 stress 0.005105024 
## ... Procrustes: rmse 0.009664225  max resid 0.02112229 
## Run 459 stress 0.00509376 
## ... Procrustes: rmse 0.008712785  max resid 0.01898823 
## Run 460 stress 0.005054101 
## ... Procrustes: rmse 0.0003271975  max resid 0.0007122926 
## ... Similar to previous best
## Run 461 stress 0.005065442 
## ... Procrustes: rmse 0.005446621  max resid 0.01169123 
## Run 462 stress 0.005054188 
## ... Procrustes: rmse 0.0004068682  max resid 0.000928444 
## ... Similar to previous best
## Run 463 stress 0.005054232 
## ... Procrustes: rmse 0.0004341294  max resid 0.0009897407 
## ... Similar to previous best
## Run 464 stress 0.005056539 
## ... Procrustes: rmse 0.003354541  max resid 0.007158233 
## ... Similar to previous best
## Run 465 stress 0.005090855 
## ... Procrustes: rmse 0.008438935  max resid 0.01837376 
## Run 466 stress 0.005054266 
## ... Procrustes: rmse 0.0004490844  max resid 0.001024071 
## ... Similar to previous best
## Run 467 stress 0.005054227 
## ... Procrustes: rmse 0.0004312172  max resid 0.000983322 
## ... Similar to previous best
## Run 468 stress 0.052431 
## Run 469 stress 0.005088131 
## ... Procrustes: rmse 0.008205163  max resid 0.01784862 
## Run 470 stress 0.005054188 
## ... Procrustes: rmse 0.0004067216  max resid 0.000927961 
## ... Similar to previous best
## Run 471 stress 0.05243111 
## Run 472 stress 0.005054077 
## ... Procrustes: rmse 7.23991e-05  max resid 0.0001427199 
## ... Similar to previous best
## Run 473 stress 0.005128036 
## ... Procrustes: rmse 0.01108392  max resid 0.02430848 
## Run 474 stress 0.00505425 
## ... Procrustes: rmse 0.000438889  max resid 0.0009998913 
## ... Similar to previous best
## Run 475 stress 0.005054134 
## ... Procrustes: rmse 0.0003659292  max resid 0.0008362445 
## ... Similar to previous best
## Run 476 stress 0.05243075 
## Run 477 stress 0.00505416 
## ... Procrustes: rmse 0.0003860713  max resid 0.000881749 
## ... Similar to previous best
## Run 478 stress 0.005054255 
## ... Procrustes: rmse 0.0004463488  max resid 0.001017642 
## ... Similar to previous best
## Run 479 stress 0.005111975 
## ... Procrustes: rmse 0.01019275  max resid 0.02230781 
## Run 480 stress 0.005119298 
## ... Procrustes: rmse 0.01070829  max resid 0.02346301 
## Run 481 stress 0.05243095 
## Run 482 stress 0.06465836 
## Run 483 stress 0.005054195 
## ... Procrustes: rmse 0.0004112341  max resid 0.0009382622 
## ... Similar to previous best
## Run 484 stress 0.005086442 
## ... Procrustes: rmse 0.007467122  max resid 0.01618842 
## Run 485 stress 0.005054183 
## ... Procrustes: rmse 0.0004016973  max resid 0.0009170599 
## ... Similar to previous best
## Run 486 stress 0.005082596 
## ... Procrustes: rmse 0.007649147  max resid 0.01660131 
## Run 487 stress 0.05243079 
## Run 488 stress 0.05243083 
## Run 489 stress 0.005054177 
## ... Procrustes: rmse 0.0003990565  max resid 0.0009107147 
## ... Similar to previous best
## Run 490 stress 0.05243079 
## Run 491 stress 0.005054278 
## ... Procrustes: rmse 0.0004557899  max resid 0.001039155 
## ... Similar to previous best
## Run 492 stress 0.005054255 
## ... Procrustes: rmse 0.0004478735  max resid 0.001020868 
## ... Similar to previous best
## Run 493 stress 0.05243109 
## Run 494 stress 0.05243096 
## Run 495 stress 0.005054207 
## ... Procrustes: rmse 0.0004117522  max resid 0.0009389072 
## ... Similar to previous best
## Run 496 stress 0.005054209 
## ... Procrustes: rmse 0.0004206159  max resid 0.0009592771 
## ... Similar to previous best
## Run 497 stress 0.005102611 
## ... Procrustes: rmse 0.009461417  max resid 0.02066667 
## Run 498 stress 0.005082745 
## ... Procrustes: rmse 0.007664783  max resid 0.01663646 
## Run 499 stress 0.005054207 
## ... Procrustes: rmse 0.0004170806  max resid 0.0009517857 
## ... Similar to previous best
## Run 500 stress 0.005054639 
## ... Procrustes: rmse 0.001903383  max resid 0.004072042 
## ... Similar to previous best
## *** Best solution repeated 69 times
# Stratified lakes and ocean sites
envbso_NMDS <- metaMDS(envbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)
## Run 0 stress 0.006360832 
## Run 1 stress 0.006341233 
## ... New best solution
## ... Procrustes: rmse 0.005339532  max resid 0.01269859 
## Run 2 stress 0.006341031 
## ... New best solution
## ... Procrustes: rmse 0.0005446694  max resid 0.001242801 
## ... Similar to previous best
## Run 3 stress 0.00635955 
## ... Procrustes: rmse 0.005570204  max resid 0.01327888 
## Run 4 stress 0.00634107 
## ... Procrustes: rmse 2.599425e-05  max resid 5.814095e-05 
## ... Similar to previous best
## Run 5 stress 0.006341303 
## ... Procrustes: rmse 0.0005843981  max resid 0.001337154 
## ... Similar to previous best
## Run 6 stress 0.006341005 
## ... New best solution
## ... Procrustes: rmse 1.900599e-05  max resid 4.2389e-05 
## ... Similar to previous best
## Run 7 stress 0.006341039 
## ... Procrustes: rmse 2.494108e-05  max resid 5.561047e-05 
## ... Similar to previous best
## Run 8 stress 0.006341145 
## ... Procrustes: rmse 7.947033e-05  max resid 0.0001769269 
## ... Similar to previous best
## Run 9 stress 0.006341012 
## ... Procrustes: rmse 5.339213e-06  max resid 1.191913e-05 
## ... Similar to previous best
## Run 10 stress 0.006352185 
## ... Procrustes: rmse 0.003703467  max resid 0.008811059 
## ... Similar to previous best
## Run 11 stress 0.006341078 
## ... Procrustes: rmse 4.844109e-05  max resid 0.0001082495 
## ... Similar to previous best
## Run 12 stress 0.006341041 
## ... Procrustes: rmse 2.606469e-05  max resid 5.814721e-05 
## ... Similar to previous best
## Run 13 stress 0.006359105 
## ... Procrustes: rmse 0.00543374  max resid 0.01295259 
## Run 14 stress 0.006360578 
## ... Procrustes: rmse 0.005733048  max resid 0.01366957 
## Run 15 stress 0.006341272 
## ... Procrustes: rmse 0.0005488576  max resid 0.001255311 
## ... Similar to previous best
## Run 16 stress 0.006341087 
## ... Procrustes: rmse 5.497127e-05  max resid 0.0001229147 
## ... Similar to previous best
## Run 17 stress 0.006348902 
## ... Procrustes: rmse 0.002828324  max resid 0.006717614 
## ... Similar to previous best
## Run 18 stress 0.006341062 
## ... Procrustes: rmse 3.999003e-05  max resid 8.932939e-05 
## ... Similar to previous best
## Run 19 stress 0.006342755 
## ... Procrustes: rmse 0.001078643  max resid 0.002514592 
## ... Similar to previous best
## Run 20 stress 0.00634101 
## ... Procrustes: rmse 4.417696e-06  max resid 9.983733e-06 
## ... Similar to previous best
## Run 21 stress 0.006340961 
## ... New best solution
## ... Procrustes: rmse 3.83624e-05  max resid 8.850307e-05 
## ... Similar to previous best
## Run 22 stress 0.006341042 
## ... Procrustes: rmse 6.329018e-05  max resid 0.0001433155 
## ... Similar to previous best
## Run 23 stress 0.006341004 
## ... Procrustes: rmse 3.781094e-05  max resid 8.725517e-05 
## ... Similar to previous best
## Run 24 stress 0.006341028 
## ... Procrustes: rmse 5.545955e-05  max resid 0.0001261462 
## ... Similar to previous best
## Run 25 stress 0.006363628 
## ... Procrustes: rmse 0.006477657  max resid 0.01545606 
## Run 26 stress 0.006341042 
## ... Procrustes: rmse 6.44886e-05  max resid 0.000145861 
## ... Similar to previous best
## Run 27 stress 0.006341287 
## ... Procrustes: rmse 0.000515729  max resid 0.001182122 
## ... Similar to previous best
## Run 28 stress 0.006361079 
## ... Procrustes: rmse 0.00586794  max resid 0.01399425 
## Run 29 stress 0.00636232 
## ... Procrustes: rmse 0.005983644  max resid 0.01427138 
## Run 30 stress 0.006363848 
## ... Procrustes: rmse 0.006534025  max resid 0.01559128 
## Run 31 stress 0.006363035 
## ... Procrustes: rmse 0.006344772  max resid 0.01513738 
## Run 32 stress 0.006341098 
## ... Procrustes: rmse 9.582663e-05  max resid 0.0002129842 
## ... Similar to previous best
## Run 33 stress 0.006352088 
## ... Procrustes: rmse 0.003373887  max resid 0.008024128 
## ... Similar to previous best
## Run 34 stress 0.006341154 
## ... Procrustes: rmse 0.0001242915  max resid 0.0002763669 
## ... Similar to previous best
## Run 35 stress 0.006341133 
## ... Procrustes: rmse 0.000114977  max resid 0.0002556113 
## ... Similar to previous best
## Run 36 stress 0.006341033 
## ... Procrustes: rmse 5.8945e-05  max resid 0.0001338207 
## ... Similar to previous best
## Run 37 stress 0.3578487 
## Run 38 stress 0.006341053 
## ... Procrustes: rmse 6.896622e-05  max resid 0.0001554792 
## ... Similar to previous best
## Run 39 stress 0.006365091 
## ... Procrustes: rmse 0.006819963  max resid 0.0162773 
## Run 40 stress 0.006361623 
## ... Procrustes: rmse 0.005986631  max resid 0.01427867 
## Run 41 stress 0.006357498 
## ... Procrustes: rmse 0.004986813  max resid 0.01188363 
## Run 42 stress 0.006365078 
## ... Procrustes: rmse 0.006816909  max resid 0.01626997 
## Run 43 stress 0.00634108 
## ... Procrustes: rmse 8.285305e-05  max resid 0.0001851408 
## ... Similar to previous best
## Run 44 stress 0.006340999 
## ... Procrustes: rmse 3.354283e-05  max resid 7.701507e-05 
## ... Similar to previous best
## Run 45 stress 0.006341051 
## ... Procrustes: rmse 7.096297e-05  max resid 0.0001601718 
## ... Similar to previous best
## Run 46 stress 0.006341103 
## ... Procrustes: rmse 0.0001028396  max resid 0.0002287891 
## ... Similar to previous best
## Run 47 stress 0.006341166 
## ... Procrustes: rmse 0.0001330682  max resid 0.0002958189 
## ... Similar to previous best
## Run 48 stress 0.006341072 
## ... Procrustes: rmse 7.943206e-05  max resid 0.0001778933 
## ... Similar to previous best
## Run 49 stress 0.006341131 
## ... Procrustes: rmse 0.0001177884  max resid 0.0002620439 
## ... Similar to previous best
## Run 50 stress 0.006341102 
## ... Procrustes: rmse 0.0001010924  max resid 0.0002248909 
## ... Similar to previous best
## Run 51 stress 0.006365261 
## ... Procrustes: rmse 0.006857424  max resid 0.0163672 
## Run 52 stress 0.0063413 
## ... Procrustes: rmse 0.0005091969  max resid 0.001177137 
## ... Similar to previous best
## Run 53 stress 0.006361217 
## ... Procrustes: rmse 0.005916304  max resid 0.01411016 
## Run 54 stress 0.006341111 
## ... Procrustes: rmse 0.000105772  max resid 0.0002353106 
## ... Similar to previous best
## Run 55 stress 0.006340958 
## ... New best solution
## ... Procrustes: rmse 3.36219e-06  max resid 8.027653e-06 
## ... Similar to previous best
## Run 56 stress 0.006341058 
## ... Procrustes: rmse 7.732279e-05  max resid 0.000174693 
## ... Similar to previous best
## Run 57 stress 0.006341027 
## ... Procrustes: rmse 5.667393e-05  max resid 0.0001295899 
## ... Similar to previous best
## Run 58 stress 0.006341074 
## ... Procrustes: rmse 8.754192e-05  max resid 0.0001964254 
## ... Similar to previous best
## Run 59 stress 0.006341161 
## ... Procrustes: rmse 0.0001366279  max resid 0.0003036717 
## ... Similar to previous best
## Run 60 stress 0.006341017 
## ... Procrustes: rmse 5.104927e-05  max resid 0.0001173074 
## ... Similar to previous best
## Run 61 stress 0.006363252 
## ... Procrustes: rmse 0.006392284  max resid 0.01525143 
## Run 62 stress 0.006341069 
## ... Procrustes: rmse 8.541321e-05  max resid 0.000191957 
## ... Similar to previous best
## Run 63 stress 0.006341137 
## ... Procrustes: rmse 0.0004217786  max resid 0.0009609929 
## ... Similar to previous best
## Run 64 stress 0.006341049 
## ... Procrustes: rmse 7.236959e-05  max resid 0.0001643475 
## ... Similar to previous best
## Run 65 stress 0.006341133 
## ... Procrustes: rmse 0.0001223268  max resid 0.0002719327 
## ... Similar to previous best
## Run 66 stress 0.006362285 
## ... Procrustes: rmse 0.00616319  max resid 0.0147021 
## Run 67 stress 0.006363792 
## ... Procrustes: rmse 0.006518116  max resid 0.01555323 
## Run 68 stress 0.006341134 
## ... Procrustes: rmse 0.0001228571  max resid 0.0002730913 
## ... Similar to previous best
## Run 69 stress 0.006341084 
## ... Procrustes: rmse 8.75419e-05  max resid 0.0001963767 
## ... Similar to previous best
## Run 70 stress 0.006341154 
## ... Procrustes: rmse 0.0001285922  max resid 0.0002857375 
## ... Similar to previous best
## Run 71 stress 0.006340969 
## ... Procrustes: rmse 5.852769e-06  max resid 1.149745e-05 
## ... Similar to previous best
## Run 72 stress 0.006341026 
## ... Procrustes: rmse 5.333427e-05  max resid 0.0001219274 
## ... Similar to previous best
## Run 73 stress 0.006341181 
## ... Procrustes: rmse 0.0001394905  max resid 0.0003098579 
## ... Similar to previous best
## Run 74 stress 0.006341014 
## ... Procrustes: rmse 4.852905e-05  max resid 0.0001117561 
## ... Similar to previous best
## Run 75 stress 0.006340985 
## ... Procrustes: rmse 2.326217e-05  max resid 5.362071e-05 
## ... Similar to previous best
## Run 76 stress 0.006341031 
## ... Procrustes: rmse 5.999731e-05  max resid 0.0001370501 
## ... Similar to previous best
## Run 77 stress 0.00634106 
## ... Procrustes: rmse 8.012211e-05  max resid 0.0001807912 
## ... Similar to previous best
## Run 78 stress 0.006362529 
## ... Procrustes: rmse 0.006223379  max resid 0.0148464 
## Run 79 stress 0.006341149 
## ... Procrustes: rmse 0.000130724  max resid 0.0002905851 
## ... Similar to previous best
## Run 80 stress 0.006363022 
## ... Procrustes: rmse 0.00633647  max resid 0.01511758 
## Run 81 stress 0.006341087 
## ... Procrustes: rmse 9.507377e-05  max resid 0.0002119124 
## ... Similar to previous best
## Run 82 stress 0.006341065 
## ... Procrustes: rmse 8.155203e-05  max resid 0.0001836977 
## ... Similar to previous best
## Run 83 stress 0.006340994 
## ... Procrustes: rmse 3.322505e-05  max resid 7.784195e-05 
## ... Similar to previous best
## Run 84 stress 0.00634117 
## ... Procrustes: rmse 0.0001333343  max resid 0.0002960814 
## ... Similar to previous best
## Run 85 stress 0.006340955 
## ... New best solution
## ... Procrustes: rmse 7.527062e-06  max resid 2.079951e-05 
## ... Similar to previous best
## Run 86 stress 0.006341022 
## ... Procrustes: rmse 6.107957e-05  max resid 0.0001462112 
## ... Similar to previous best
## Run 87 stress 0.006341029 
## ... Procrustes: rmse 6.574295e-05  max resid 0.0001565405 
## ... Similar to previous best
## Run 88 stress 0.006366317 
## ... Procrustes: rmse 0.007085309  max resid 0.01691453 
## Run 89 stress 0.006341118 
## ... Procrustes: rmse 0.000118489  max resid 0.000268102 
## ... Similar to previous best
## Run 90 stress 0.006341003 
## ... Procrustes: rmse 4.645752e-05  max resid 0.0001129485 
## ... Similar to previous best
## Run 91 stress 0.006358833 
## ... Procrustes: rmse 0.005330405  max resid 0.01270685 
## Run 92 stress 0.006364245 
## ... Procrustes: rmse 0.006617955  max resid 0.015793 
## Run 93 stress 0.006341017 
## ... Procrustes: rmse 5.693358e-05  max resid 0.0001367708 
## ... Similar to previous best
## Run 94 stress 0.006341013 
## ... Procrustes: rmse 5.285073e-05  max resid 0.0001274269 
## ... Similar to previous best
## Run 95 stress 0.006341144 
## ... Procrustes: rmse 0.0001344405  max resid 0.000300843 
## ... Similar to previous best
## Run 96 stress 0.00636316 
## ... Procrustes: rmse 0.006365688  max resid 0.01518794 
## Run 97 stress 0.006341174 
## ... Procrustes: rmse 0.0001475613  max resid 0.0003276332 
## ... Similar to previous best
## Run 98 stress 0.006362364 
## ... Procrustes: rmse 0.006179571  max resid 0.01474166 
## Run 99 stress 0.006341107 
## ... Procrustes: rmse 0.0001142411  max resid 0.0002594887 
## ... Similar to previous best
## Run 100 stress 0.006341074 
## ... Procrustes: rmse 9.467933e-05  max resid 0.0002191837 
## ... Similar to previous best
## Run 101 stress 0.006341252 
## ... Procrustes: rmse 0.0001819854  max resid 0.0004026054 
## ... Similar to previous best
## Run 102 stress 0.006341028 
## ... Procrustes: rmse 5.802653e-05  max resid 0.0001394093 
## ... Similar to previous best
## Run 103 stress 0.006365116 
## ... Procrustes: rmse 0.006817332  max resid 0.01627135 
## Run 104 stress 0.006364282 
## ... Procrustes: rmse 0.006611071  max resid 0.01577644 
## Run 105 stress 0.006364573 
## ... Procrustes: rmse 0.006690988  max resid 0.01596819 
## Run 106 stress 0.006340967 
## ... Procrustes: rmse 1.612449e-05  max resid 4.220703e-05 
## ... Similar to previous best
## Run 107 stress 0.006341092 
## ... Procrustes: rmse 0.0001049511  max resid 0.0002403349 
## ... Similar to previous best
## Run 108 stress 0.006346541 
## ... Procrustes: rmse 0.002130131  max resid 0.005050342 
## ... Similar to previous best
## Run 109 stress 0.006341029 
## ... Procrustes: rmse 6.314813e-05  max resid 0.0001505904 
## ... Similar to previous best
## Run 110 stress 0.006341082 
## ... Procrustes: rmse 9.960101e-05  max resid 0.0002293795 
## ... Similar to previous best
## Run 111 stress 0.006341022 
## ... Procrustes: rmse 5.466097e-05  max resid 0.0001315029 
## ... Similar to previous best
## Run 112 stress 0.006341092 
## ... Procrustes: rmse 0.0001058566  max resid 0.0002422665 
## ... Similar to previous best
## Run 113 stress 0.006341069 
## ... Procrustes: rmse 8.990145e-05  max resid 0.0002089152 
## ... Similar to previous best
## Run 114 stress 0.006363822 
## ... Procrustes: rmse 0.00651847  max resid 0.01555435 
## Run 115 stress 0.006341109 
## ... Procrustes: rmse 0.000114958  max resid 0.0002609759 
## ... Similar to previous best
## Run 116 stress 0.00634112 
## ... Procrustes: rmse 0.0001167664  max resid 0.0002646609 
## ... Similar to previous best
## Run 117 stress 0.006340995 
## ... Procrustes: rmse 3.991583e-05  max resid 9.798711e-05 
## ... Similar to previous best
## Run 118 stress 0.006341123 
## ... Procrustes: rmse 0.0001229093  max resid 0.0002772642 
## ... Similar to previous best
## Run 119 stress 0.00634106 
## ... Procrustes: rmse 8.572868e-05  max resid 0.0002001266 
## ... Similar to previous best
## Run 120 stress 0.006364435 
## ... Procrustes: rmse 0.006632002  max resid 0.0158267 
## Run 121 stress 0.006363989 
## ... Procrustes: rmse 0.006557855  max resid 0.01564882 
## Run 122 stress 0.006341076 
## ... Procrustes: rmse 9.602097e-05  max resid 0.0002219762 
## ... Similar to previous best
## Run 123 stress 0.006363602 
## ... Procrustes: rmse 0.006468752  max resid 0.01543511 
## Run 124 stress 0.006341004 
## ... Procrustes: rmse 4.71482e-05  max resid 0.0001157233 
## ... Similar to previous best
## Run 125 stress 0.006365217 
## ... Procrustes: rmse 0.006820899  max resid 0.01627992 
## Run 126 stress 0.006341314 
## ... Procrustes: rmse 0.0005121002  max resid 0.001176211 
## ... Similar to previous best
## Run 127 stress 0.006341048 
## ... Procrustes: rmse 7.832599e-05  max resid 0.0001843256 
## ... Similar to previous best
## Run 128 stress 0.006363703 
## ... Procrustes: rmse 0.006489158  max resid 0.01548406 
## Run 129 stress 0.00635694 
## ... Procrustes: rmse 0.004869627  max resid 0.0116036 
## Run 130 stress 0.006361329 
## ... Procrustes: rmse 0.005928835  max resid 0.01414063 
## Run 131 stress 0.006365415 
## ... Procrustes: rmse 0.00685488  max resid 0.01636138 
## Run 132 stress 0.006341123 
## ... Procrustes: rmse 0.0001184638  max resid 0.0002679516 
## ... Similar to previous best
## Run 133 stress 0.006365855 
## ... Procrustes: rmse 0.006878507  max resid 0.01641794 
## Run 134 stress 0.006341028 
## ... Procrustes: rmse 6.481832e-05  max resid 0.0001545345 
## ... Similar to previous best
## Run 135 stress 0.006341113 
## ... Procrustes: rmse 0.000117242  max resid 0.0002656391 
## ... Similar to previous best
## Run 136 stress 0.006340995 
## ... Procrustes: rmse 3.934239e-05  max resid 9.71673e-05 
## ... Similar to previous best
## Run 137 stress 0.006341136 
## ... Procrustes: rmse 0.0001297152  max resid 0.0002911878 
## ... Similar to previous best
## Run 138 stress 0.006363368 
## ... Procrustes: rmse 0.006412984  max resid 0.01530137 
## Run 139 stress 0.006340922 
## ... New best solution
## ... Procrustes: rmse 3.591329e-05  max resid 8.355632e-05 
## ... Similar to previous best
## Run 140 stress 0.006341317 
## ... Procrustes: rmse 0.0004795174  max resid 0.001111806 
## ... Similar to previous best
## Run 141 stress 0.00634108 
## ... Procrustes: rmse 0.0001313703  max resid 0.0003044595 
## ... Similar to previous best
## Run 142 stress 0.006340995 
## ... Procrustes: rmse 7.552015e-05  max resid 0.0001813316 
## ... Similar to previous best
## Run 143 stress 0.00635641 
## ... Procrustes: rmse 0.004691332  max resid 0.01117809 
## Run 144 stress 0.006348847 
## ... Procrustes: rmse 0.002735292  max resid 0.006500299 
## ... Similar to previous best
## Run 145 stress 0.006341216 
## ... Procrustes: rmse 0.0004306169  max resid 0.0009889525 
## ... Similar to previous best
## Run 146 stress 0.006341048 
## ... Procrustes: rmse 0.000109394  max resid 0.0002575402 
## ... Similar to previous best
## Run 147 stress 0.006341099 
## ... Procrustes: rmse 0.0001401196  max resid 0.0003224897 
## ... Similar to previous best
## Run 148 stress 0.006341096 
## ... Procrustes: rmse 0.000143298  max resid 0.0003291478 
## ... Similar to previous best
## Run 149 stress 0.006341051 
## ... Procrustes: rmse 0.0001115549  max resid 0.0002621668 
## ... Similar to previous best
## Run 150 stress 0.006341006 
## ... Procrustes: rmse 8.453903e-05  max resid 0.0002018368 
## ... Similar to previous best
## Run 151 stress 0.006341068 
## ... Procrustes: rmse 0.0001232982  max resid 0.0002874521 
## ... Similar to previous best
## Run 152 stress 0.006341054 
## ... Procrustes: rmse 0.0001132517  max resid 0.0002658336 
## ... Similar to previous best
## Run 153 stress 0.006341036 
## ... Procrustes: rmse 0.0001060618  max resid 0.0002501285 
## ... Similar to previous best
## Run 154 stress 0.006341049 
## ... Procrustes: rmse 0.0001149772  max resid 0.0002696319 
## ... Similar to previous best
## Run 155 stress 0.006341033 
## ... Procrustes: rmse 0.0001038921  max resid 0.0002453416 
## ... Similar to previous best
## Run 156 stress 0.00634105 
## ... Procrustes: rmse 0.0001130301  max resid 0.000265348 
## ... Similar to previous best
## Run 157 stress 0.006341066 
## ... Procrustes: rmse 0.0001260709  max resid 0.000293409 
## ... Similar to previous best
## Run 158 stress 0.006355773 
## ... Procrustes: rmse 0.004532638  max resid 0.01079835 
## Run 159 stress 0.006341181 
## ... Procrustes: rmse 0.0001814429  max resid 0.0004071515 
## ... Similar to previous best
## Run 160 stress 0.006340983 
## ... Procrustes: rmse 6.592616e-05  max resid 0.0001597132 
## ... Similar to previous best
## Run 161 stress 0.006341104 
## ... Procrustes: rmse 0.000148137  max resid 0.0003390943 
## ... Similar to previous best
## Run 162 stress 0.006341093 
## ... Procrustes: rmse 0.0001397957  max resid 0.0003218885 
## ... Similar to previous best
## Run 163 stress 0.006341327 
## ... Procrustes: rmse 0.0004914335  max resid 0.001131907 
## ... Similar to previous best
## Run 164 stress 0.006365865 
## ... Procrustes: rmse 0.006949882  max resid 0.01659045 
## Run 165 stress 0.006340943 
## ... Procrustes: rmse 2.586884e-05  max resid 6.437952e-05 
## ... Similar to previous best
## Run 166 stress 0.00634108 
## ... Procrustes: rmse 0.0001261857  max resid 0.0002936286 
## ... Similar to previous best
## Run 167 stress 0.006341193 
## ... Procrustes: rmse 0.0001903145  max resid 0.0004254076 
## ... Similar to previous best
## Run 168 stress 0.006365724 
## ... Procrustes: rmse 0.00692267  max resid 0.01652517 
## Run 169 stress 0.006366838 
## ... Procrustes: rmse 0.007176168  max resid 0.01713364 
## Run 170 stress 0.006341127 
## ... Procrustes: rmse 0.0001578574  max resid 0.000358959 
## ... Similar to previous best
## Run 171 stress 0.006364677 
## ... Procrustes: rmse 0.00667951  max resid 0.01594168 
## Run 172 stress 0.006341083 
## ... Procrustes: rmse 0.0003399521  max resid 0.0007751318 
## ... Similar to previous best
## Run 173 stress 0.00634105 
## ... Procrustes: rmse 0.0001147764  max resid 0.0002691523 
## ... Similar to previous best
## Run 174 stress 0.006361574 
## ... Procrustes: rmse 0.005959392  max resid 0.01421494 
## Run 175 stress 0.006366687 
## ... Procrustes: rmse 0.007142832  max resid 0.01705361 
## Run 176 stress 0.006361806 
## ... Procrustes: rmse 0.005997468  max resid 0.0143062 
## Run 177 stress 0.006364241 
## ... Procrustes: rmse 0.006583703  max resid 0.01571187 
## Run 178 stress 0.006341112 
## ... Procrustes: rmse 0.000148745  max resid 0.0003402931 
## ... Similar to previous best
## Run 179 stress 0.006362991 
## ... Procrustes: rmse 0.006285946  max resid 0.01499775 
## Run 180 stress 0.00634099 
## ... Procrustes: rmse 7.092251e-05  max resid 0.0001717222 
## ... Similar to previous best
## Run 181 stress 0.006361078 
## ... Procrustes: rmse 0.005841917  max resid 0.01393341 
## Run 182 stress 0.006341124 
## ... Procrustes: rmse 0.000155334  max resid 0.0003538152 
## ... Similar to previous best
## Run 183 stress 0.006341141 
## ... Procrustes: rmse 0.000163587  max resid 0.0003706676 
## ... Similar to previous best
## Run 184 stress 0.006341236 
## ... Procrustes: rmse 0.0004245894  max resid 0.0009882134 
## ... Similar to previous best
## Run 185 stress 0.006341149 
## ... Procrustes: rmse 0.000166784  max resid 0.000377199 
## ... Similar to previous best
## Run 186 stress 0.006340975 
## ... Procrustes: rmse 5.503744e-05  max resid 0.0001334694 
## ... Similar to previous best
## Run 187 stress 0.006341109 
## ... Procrustes: rmse 0.0001429757  max resid 0.0003283128 
## ... Similar to previous best
## Run 188 stress 0.006341142 
## ... Procrustes: rmse 0.0001639116  max resid 0.000371389 
## ... Similar to previous best
## Run 189 stress 0.006341149 
## ... Procrustes: rmse 0.0003773419  max resid 0.0008745188 
## ... Similar to previous best
## Run 190 stress 0.006366705 
## ... Procrustes: rmse 0.007146633  max resid 0.01706274 
## Run 191 stress 0.006362793 
## ... Procrustes: rmse 0.006246988  max resid 0.01490436 
## Run 192 stress 0.006341341 
## ... Procrustes: rmse 0.0005042942  max resid 0.001161885 
## ... Similar to previous best
## Run 193 stress 0.006341104 
## ... Procrustes: rmse 0.0001478741  max resid 0.0003385503 
## ... Similar to previous best
## Run 194 stress 0.006341119 
## ... Procrustes: rmse 0.000151713  max resid 0.0003463727 
## ... Similar to previous best
## Run 195 stress 0.006341141 
## ... Procrustes: rmse 0.000168527  max resid 0.0003808949 
## ... Similar to previous best
## Run 196 stress 0.006341082 
## ... Procrustes: rmse 0.0001357835  max resid 0.0003136786 
## ... Similar to previous best
## Run 197 stress 0.006340981 
## ... Procrustes: rmse 6.345209e-05  max resid 0.0001533932 
## ... Similar to previous best
## Run 198 stress 0.006341081 
## ... Procrustes: rmse 0.0001351062  max resid 0.0003122798 
## ... Similar to previous best
## Run 199 stress 0.006341175 
## ... Procrustes: rmse 0.0001814203  max resid 0.0004072331 
## ... Similar to previous best
## Run 200 stress 0.006341018 
## ... Procrustes: rmse 9.219909e-05  max resid 0.0002191461 
## ... Similar to previous best
## Run 201 stress 0.006364643 
## ... Procrustes: rmse 0.006675586  max resid 0.01593228 
## Run 202 stress 0.3495558 
## Run 203 stress 0.006364434 
## ... Procrustes: rmse 0.006621721  max resid 0.01580305 
## Run 204 stress 0.006341062 
## ... Procrustes: rmse 0.0001213247  max resid 0.0002832867 
## ... Similar to previous best
## Run 205 stress 0.006341136 
## ... Procrustes: rmse 0.000165639  max resid 0.000374987 
## ... Similar to previous best
## Run 206 stress 0.00636297 
## ... Procrustes: rmse 0.006281382  max resid 0.01498681 
## Run 207 stress 0.006341008 
## ... Procrustes: rmse 8.62673e-05  max resid 0.000206076 
## ... Similar to previous best
## Run 208 stress 0.006341102 
## ... Procrustes: rmse 0.0001433609  max resid 0.00032919 
## ... Similar to previous best
## Run 209 stress 0.006341187 
## ... Procrustes: rmse 0.0001840343  max resid 0.0004125338 
## ... Similar to previous best
## Run 210 stress 0.006341051 
## ... Procrustes: rmse 0.0001166818  max resid 0.0002732699 
## ... Similar to previous best
## Run 211 stress 0.006341173 
## ... Procrustes: rmse 0.0001758537  max resid 0.0003957846 
## ... Similar to previous best
## Run 212 stress 0.006341078 
## ... Procrustes: rmse 0.0001333566  max resid 0.0003086501 
## ... Similar to previous best
## Run 213 stress 0.006341173 
## ... Procrustes: rmse 0.0001846525  max resid 0.0004138536 
## ... Similar to previous best
## Run 214 stress 0.006341106 
## ... Procrustes: rmse 0.0001491587  max resid 0.0003411864 
## ... Similar to previous best
## Run 215 stress 0.006341168 
## ... Procrustes: rmse 0.0001766196  max resid 0.0003973218 
## ... Similar to previous best
## Run 216 stress 0.006341074 
## ... Procrustes: rmse 0.0001304918  max resid 0.0003026546 
## ... Similar to previous best
## Run 217 stress 0.006352482 
## ... Procrustes: rmse 0.003703018  max resid 0.008813973 
## ... Similar to previous best
## Run 218 stress 0.00634105 
## ... Procrustes: rmse 0.0001147292  max resid 0.0002690691 
## ... Similar to previous best
## Run 219 stress 0.006364682 
## ... Procrustes: rmse 0.006570619  max resid 0.0156804 
## Run 220 stress 0.006341128 
## ... Procrustes: rmse 0.0001565747  max resid 0.0003562979 
## ... Similar to previous best
## Run 221 stress 0.006357504 
## ... Procrustes: rmse 0.004938563  max resid 0.01176976 
## Run 222 stress 0.006364056 
## ... Procrustes: rmse 0.006540849  max resid 0.01560908 
## Run 223 stress 0.006341061 
## ... Procrustes: rmse 0.0001163926  max resid 0.000272571 
## ... Similar to previous best
## Run 224 stress 0.006341103 
## ... Procrustes: rmse 0.0001477805  max resid 0.0003386263 
## ... Similar to previous best
## Run 225 stress 0.006361157 
## ... Procrustes: rmse 0.005860545  max resid 0.01397805 
## Run 226 stress 0.006363876 
## ... Procrustes: rmse 0.006499207  max resid 0.01550919 
## Run 227 stress 0.006341115 
## ... Procrustes: rmse 0.0001467227  max resid 0.0003360759 
## ... Similar to previous best
## Run 228 stress 0.006364769 
## ... Procrustes: rmse 0.006703506  max resid 0.01599928 
## Run 229 stress 0.006341083 
## ... Procrustes: rmse 0.0001352165  max resid 0.0003124731 
## ... Similar to previous best
## Run 230 stress 0.006341101 
## ... Procrustes: rmse 0.000146277  max resid 0.0003352672 
## ... Similar to previous best
## Run 231 stress 0.006341101 
## ... Procrustes: rmse 0.0001466326  max resid 0.0003360014 
## ... Similar to previous best
## Run 232 stress 0.006341142 
## ... Procrustes: rmse 0.0001657885  max resid 0.0003752611 
## ... Similar to previous best
## Run 233 stress 0.006341096 
## ... Procrustes: rmse 0.0001406256  max resid 0.0003236041 
## ... Similar to previous best
## Run 234 stress 0.006341117 
## ... Procrustes: rmse 0.0001554603  max resid 0.000354126 
## ... Similar to previous best
## Run 235 stress 0.006359291 
## ... Procrustes: rmse 0.005413249  max resid 0.01290644 
## Run 236 stress 0.3578478 
## Run 237 stress 0.006341048 
## ... Procrustes: rmse 0.0001131105  max resid 0.0002655289 
## ... Similar to previous best
## Run 238 stress 0.006341174 
## ... Procrustes: rmse 0.0001855917  max resid 0.0004158025 
## ... Similar to previous best
## Run 239 stress 0.00636442 
## ... Procrustes: rmse 0.006624482  max resid 0.01580969 
## Run 240 stress 0.006341324 
## ... Procrustes: rmse 0.0004952599  max resid 0.001140952 
## ... Similar to previous best
## Run 241 stress 0.006341228 
## ... Procrustes: rmse 0.0002047514  max resid 0.0004548473 
## ... Similar to previous best
## Run 242 stress 0.006340997 
## ... Procrustes: rmse 7.447264e-05  max resid 0.0001793348 
## ... Similar to previous best
## Run 243 stress 0.006340964 
## ... Procrustes: rmse 4.863785e-05  max resid 0.0001187191 
## ... Similar to previous best
## Run 244 stress 0.006363005 
## ... Procrustes: rmse 0.006295437  max resid 0.01502052 
## Run 245 stress 0.006341009 
## ... Procrustes: rmse 8.654977e-05  max resid 0.0002066396 
## ... Similar to previous best
## Run 246 stress 0.006341213 
## ... Procrustes: rmse 0.0001979633  max resid 0.0004410041 
## ... Similar to previous best
## Run 247 stress 0.006341116 
## ... Procrustes: rmse 0.0001542237  max resid 0.0003515855 
## ... Similar to previous best
## Run 248 stress 0.00634102 
## ... Procrustes: rmse 9.180412e-05  max resid 0.0002182702 
## ... Similar to previous best
## Run 249 stress 0.006341111 
## ... Procrustes: rmse 0.00015207  max resid 0.0003471678 
## ... Similar to previous best
## Run 250 stress 0.006341224 
## ... Procrustes: rmse 0.0004383431  max resid 0.001007127 
## ... Similar to previous best
## Run 251 stress 0.006341034 
## ... Procrustes: rmse 0.0001030438  max resid 0.0002434906 
## ... Similar to previous best
## Run 252 stress 0.006362022 
## ... Procrustes: rmse 0.00606482  max resid 0.01446763 
## Run 253 stress 0.006341094 
## ... Procrustes: rmse 0.0001344284  max resid 0.0003107593 
## ... Similar to previous best
## Run 254 stress 0.006346796 
## ... Procrustes: rmse 0.002169571  max resid 0.005147313 
## ... Similar to previous best
## Run 255 stress 0.006341015 
## ... Procrustes: rmse 8.45625e-05  max resid 0.0002019162 
## ... Similar to previous best
## Run 256 stress 0.006340908 
## ... New best solution
## ... Procrustes: rmse 2.271073e-05  max resid 5.072808e-05 
## ... Similar to previous best
## Run 257 stress 0.006341103 
## ... Procrustes: rmse 0.0001635426  max resid 0.0003733909 
## ... Similar to previous best
## Run 258 stress 0.006341006 
## ... Procrustes: rmse 0.0001069535  max resid 0.0002506051 
## ... Similar to previous best
## Run 259 stress 0.00636257 
## ... Procrustes: rmse 0.006170092  max resid 0.01472058 
## Run 260 stress 0.00634112 
## ... Procrustes: rmse 0.0001723385  max resid 0.0003914481 
## ... Similar to previous best
## Run 261 stress 0.3407916 
## Run 262 stress 0.006340983 
## ... Procrustes: rmse 8.211201e-05  max resid 0.0001934028 
## ... Similar to previous best
## Run 263 stress 0.006341023 
## ... Procrustes: rmse 0.0001201089  max resid 0.0002805397 
## ... Similar to previous best
## Run 264 stress 0.006362389 
## ... Procrustes: rmse 0.006120628  max resid 0.01460202 
## Run 265 stress 0.006341075 
## ... Procrustes: rmse 0.0001529568  max resid 0.0003515999 
## ... Similar to previous best
## Run 266 stress 0.006366724 
## ... Procrustes: rmse 0.006567776  max resid 0.01567339 
## Run 267 stress 0.006361657 
## ... Procrustes: rmse 0.00595776  max resid 0.01421162 
## Run 268 stress 0.006341105 
## ... Procrustes: rmse 0.0001684609  max resid 0.0003835416 
## ... Similar to previous best
## Run 269 stress 0.006363896 
## ... Procrustes: rmse 0.006482614  max resid 0.01546998 
## Run 270 stress 0.006340998 
## ... Procrustes: rmse 0.0001012887  max resid 0.0002386795 
## ... Similar to previous best
## Run 271 stress 0.006341063 
## ... Procrustes: rmse 0.0001465524  max resid 0.0003380942 
## ... Similar to previous best
## Run 272 stress 0.006341102 
## ... Procrustes: rmse 0.0001694923  max resid 0.0003856781 
## ... Similar to previous best
## Run 273 stress 0.006341047 
## ... Procrustes: rmse 0.0001344898  max resid 0.0003120895 
## ... Similar to previous best
## Run 274 stress 0.006365205 
## ... Procrustes: rmse 0.006766707  max resid 0.01615148 
## Run 275 stress 0.00636278 
## ... Procrustes: rmse 0.006222562  max resid 0.01484639 
## Run 276 stress 0.006365983 
## ... Procrustes: rmse 0.006961253  max resid 0.01661833 
## Run 277 stress 0.006341264 
## ... Procrustes: rmse 0.0004388551  max resid 0.001010312 
## ... Similar to previous best
## Run 278 stress 0.006361931 
## ... Procrustes: rmse 0.006022157  max resid 0.01436598 
## Run 279 stress 0.006367356 
## ... Procrustes: rmse 0.007270404  max resid 0.01736046 
## Run 280 stress 0.006364538 
## ... Procrustes: rmse 0.006630219  max resid 0.01582402 
## Run 281 stress 0.006341136 
## ... Procrustes: rmse 0.000183455  max resid 0.0004142785 
## ... Similar to previous best
## Run 282 stress 0.006341163 
## ... Procrustes: rmse 0.0002027483  max resid 0.0004538039 
## ... Similar to previous best
## Run 283 stress 0.006341098 
## ... Procrustes: rmse 0.0001671452  max resid 0.0003808633 
## ... Similar to previous best
## Run 284 stress 0.006341053 
## ... Procrustes: rmse 0.0001405436  max resid 0.0003253898 
## ... Similar to previous best
## Run 285 stress 0.006359012 
## ... Procrustes: rmse 0.005323555  max resid 0.01269226 
## Run 286 stress 0.006341017 
## ... Procrustes: rmse 0.0001148264  max resid 0.0002685708 
## ... Similar to previous best
## Run 287 stress 0.006341131 
## ... Procrustes: rmse 0.0001825611  max resid 0.0004124198 
## ... Similar to previous best
## Run 288 stress 0.006341074 
## ... Procrustes: rmse 0.0001536189  max resid 0.0003529804 
## ... Similar to previous best
## Run 289 stress 0.006353419 
## ... Procrustes: rmse 0.003924939  max resid 0.009345429 
## ... Similar to previous best
## Run 290 stress 0.006341104 
## ... Procrustes: rmse 0.0001658786  max resid 0.0003782102 
## ... Similar to previous best
## Run 291 stress 0.00634107 
## ... Procrustes: rmse 0.0001477187  max resid 0.0003405291 
## ... Similar to previous best
## Run 292 stress 0.006359939 
## ... Procrustes: rmse 0.005548123  max resid 0.01323012 
## Run 293 stress 0.006341108 
## ... Procrustes: rmse 0.0001729584  max resid 0.0003927874 
## ... Similar to previous best
## Run 294 stress 0.00636264 
## ... Procrustes: rmse 0.006189754  max resid 0.01476773 
## Run 295 stress 0.006364648 
## ... Procrustes: rmse 0.006643108  max resid 0.01585491 
## Run 296 stress 0.006341153 
## ... Procrustes: rmse 0.0001933866  max resid 0.0004345635 
## ... Similar to previous best
## Run 297 stress 0.006341131 
## ... Procrustes: rmse 0.0001858669  max resid 0.0004192537 
## ... Similar to previous best
## Run 298 stress 0.006341125 
## ... Procrustes: rmse 0.0001771622  max resid 0.0004013756 
## ... Similar to previous best
## Run 299 stress 0.006341094 
## ... Procrustes: rmse 0.0001597971  max resid 0.0003656624 
## ... Similar to previous best
## Run 300 stress 0.006341013 
## ... Procrustes: rmse 0.000112292  max resid 0.0002631759 
## ... Similar to previous best
## Run 301 stress 0.006341084 
## ... Procrustes: rmse 0.0001584992  max resid 0.000363075 
## ... Similar to previous best
## Run 302 stress 0.006359458 
## ... Procrustes: rmse 0.005429354  max resid 0.01294562 
## Run 303 stress 0.006340995 
## ... Procrustes: rmse 9.765101e-05  max resid 0.0002296481 
## ... Similar to previous best
## Run 304 stress 0.006361009 
## ... Procrustes: rmse 0.005784992  max resid 0.01379755 
## Run 305 stress 0.006363727 
## ... Procrustes: rmse 0.006439706  max resid 0.01536708 
## Run 306 stress 0.006341011 
## ... Procrustes: rmse 0.0001092289  max resid 0.0002561263 
## ... Similar to previous best
## Run 307 stress 0.006356771 
## ... Procrustes: rmse 0.004773127  max resid 0.01137453 
## Run 308 stress 0.006365474 
## ... Procrustes: rmse 0.006845562  max resid 0.01634069 
## Run 309 stress 0.006341014 
## ... Procrustes: rmse 0.0001129778  max resid 0.0002645629 
## ... Similar to previous best
## Run 310 stress 0.006341113 
## ... Procrustes: rmse 0.0001757192  max resid 0.0003984602 
## ... Similar to previous best
## Run 311 stress 0.006341058 
## ... Procrustes: rmse 0.0001373433  max resid 0.0003183215 
## ... Similar to previous best
## Run 312 stress 0.006341154 
## ... Procrustes: rmse 0.0001934214  max resid 0.0004346897 
## ... Similar to previous best
## Run 313 stress 0.3495527 
## Run 314 stress 0.006355332 
## ... Procrustes: rmse 0.00439761  max resid 0.01047595 
## Run 315 stress 0.006340954 
## ... Procrustes: rmse 6.109415e-05  max resid 0.0001443534 
## ... Similar to previous best
## Run 316 stress 0.006341056 
## ... Procrustes: rmse 0.0001424622  max resid 0.0003293223 
## ... Similar to previous best
## Run 317 stress 0.006341137 
## ... Procrustes: rmse 0.0001863994  max resid 0.0004203379 
## ... Similar to previous best
## Run 318 stress 0.006363027 
## ... Procrustes: rmse 0.006280279  max resid 0.01498477 
## Run 319 stress 0.006364763 
## ... Procrustes: rmse 0.006653454  max resid 0.0158797 
## Run 320 stress 0.006341111 
## ... Procrustes: rmse 0.0001733323  max resid 0.0003935589 
## ... Similar to previous best
## Run 321 stress 0.006340957 
## ... Procrustes: rmse 6.351967e-05  max resid 0.0001514715 
## ... Similar to previous best
## Run 322 stress 0.006341047 
## ... Procrustes: rmse 0.0001210811  max resid 0.000282578 
## ... Similar to previous best
## Run 323 stress 0.006341085 
## ... Procrustes: rmse 0.0001595347  max resid 0.0003652152 
## ... Similar to previous best
## Run 324 stress 0.006341376 
## ... Procrustes: rmse 0.0004943393  max resid 0.001140585 
## ... Similar to previous best
## Run 325 stress 0.006341006 
## ... Procrustes: rmse 0.0001048779  max resid 0.0002475375 
## ... Similar to previous best
## Run 326 stress 0.006358715 
## ... Procrustes: rmse 0.005251058  max resid 0.01251864 
## Run 327 stress 0.006341023 
## ... Procrustes: rmse 0.0001194186  max resid 0.0002789723 
## ... Similar to previous best
## Run 328 stress 0.006341009 
## ... Procrustes: rmse 0.0001091924  max resid 0.0002559169 
## ... Similar to previous best
## Run 329 stress 0.006341037 
## ... Procrustes: rmse 0.0001283434  max resid 0.0002987377 
## ... Similar to previous best
## Run 330 stress 0.006341016 
## ... Procrustes: rmse 0.0001146884  max resid 0.0002683386 
## ... Similar to previous best
## Run 331 stress 0.006341024 
## ... Procrustes: rmse 0.0001200098  max resid 0.000280914 
## ... Similar to previous best
## Run 332 stress 0.006341016 
## ... Procrustes: rmse 0.0001145656  max resid 0.000268039 
## ... Similar to previous best
## Run 333 stress 0.006360102 
## ... Procrustes: rmse 0.00558517  max resid 0.01331887 
## Run 334 stress 0.006364489 
## ... Procrustes: rmse 0.006619633  max resid 0.01579864 
## Run 335 stress 0.006341099 
## ... Procrustes: rmse 0.0001616295  max resid 0.0003694124 
## ... Similar to previous best
## Run 336 stress 0.00634098 
## ... Procrustes: rmse 8.545882e-05  max resid 0.0002015086 
## ... Similar to previous best
## Run 337 stress 0.006356295 
## ... Procrustes: rmse 0.004632746  max resid 0.01103853 
## Run 338 stress 0.006341004 
## ... Procrustes: rmse 0.000105342  max resid 0.0002495578 
## ... Similar to previous best
## Run 339 stress 0.00636628 
## ... Procrustes: rmse 0.007016776  max resid 0.01675159 
## Run 340 stress 0.006353941 
## ... Procrustes: rmse 0.004056789  max resid 0.009660739 
## ... Similar to previous best
## Run 341 stress 0.006364274 
## ... Procrustes: rmse 0.006451557  max resid 0.0153954 
## Run 342 stress 0.006341011 
## ... Procrustes: rmse 0.0002423674  max resid 0.0005600835 
## ... Similar to previous best
## Run 343 stress 0.006341055 
## ... Procrustes: rmse 0.000141294  max resid 0.0003268445 
## ... Similar to previous best
## Run 344 stress 0.00634112 
## ... Procrustes: rmse 0.0001764244  max resid 0.0003998809 
## ... Similar to previous best
## Run 345 stress 0.006360202 
## ... Procrustes: rmse 0.005608899  max resid 0.01337571 
## Run 346 stress 0.006341104 
## ... Procrustes: rmse 0.0001655078  max resid 0.0003773983 
## ... Similar to previous best
## Run 347 stress 0.006340989 
## ... Procrustes: rmse 9.337494e-05  max resid 0.0002212687 
## ... Similar to previous best
## Run 348 stress 0.006341178 
## ... Procrustes: rmse 0.0002022396  max resid 0.0004525911 
## ... Similar to previous best
## Run 349 stress 0.006340991 
## ... Procrustes: rmse 9.492834e-05  max resid 0.000224098 
## ... Similar to previous best
## Run 350 stress 0.006341051 
## ... Procrustes: rmse 0.0001388923  max resid 0.0003217492 
## ... Similar to previous best
## Run 351 stress 0.006341038 
## ... Procrustes: rmse 0.0001302763  max resid 0.0003028881 
## ... Similar to previous best
## Run 352 stress 0.006341111 
## ... Procrustes: rmse 0.0001670362  max resid 0.0003804944 
## ... Similar to previous best
## Run 353 stress 0.00636324 
## ... Procrustes: rmse 0.006329688  max resid 0.01510324 
## Run 354 stress 0.006348161 
## ... Procrustes: rmse 0.002468298  max resid 0.00586284 
## ... Similar to previous best
## Run 355 stress 0.006363158 
## ... Procrustes: rmse 0.006310743  max resid 0.01505781 
## Run 356 stress 0.006341165 
## ... Procrustes: rmse 0.0001964818  max resid 0.0004409205 
## ... Similar to previous best
## Run 357 stress 0.006341035 
## ... Procrustes: rmse 0.0001282859  max resid 0.0002986324 
## ... Similar to previous best
## Run 358 stress 0.00634111 
## ... Procrustes: rmse 0.0001743557  max resid 0.0003956706 
## ... Similar to previous best
## Run 359 stress 0.006341023 
## ... Procrustes: rmse 0.0001187469  max resid 0.0002773285 
## ... Similar to previous best
## Run 360 stress 0.006341072 
## ... Procrustes: rmse 0.0001519805  max resid 0.0003495453 
## ... Similar to previous best
## Run 361 stress 0.006359247 
## ... Procrustes: rmse 0.005381048  max resid 0.01282994 
## Run 362 stress 0.006341145 
## ... Procrustes: rmse 0.0001883891  max resid 0.0004243834 
## ... Similar to previous best
## Run 363 stress 0.006341036 
## ... Procrustes: rmse 0.0001293269  max resid 0.0003008302 
## ... Similar to previous best
## Run 364 stress 0.006344511 
## ... Procrustes: rmse 0.001492676  max resid 0.003527339 
## ... Similar to previous best
## Run 365 stress 0.00634107 
## ... Procrustes: rmse 0.0001464295  max resid 0.0003378024 
## ... Similar to previous best
## Run 366 stress 0.006341149 
## ... Procrustes: rmse 0.0001882502  max resid 0.0004240758 
## ... Similar to previous best
## Run 367 stress 0.006341172 
## ... Procrustes: rmse 0.000199767  max resid 0.00044764 
## ... Similar to previous best
## Run 368 stress 0.006362682 
## ... Procrustes: rmse 0.006199052  max resid 0.01479002 
## Run 369 stress 0.006363888 
## ... Procrustes: rmse 0.006467139  max resid 0.01543283 
## Run 370 stress 0.006340986 
## ... Procrustes: rmse 9.108146e-05  max resid 0.0002145394 
## ... Similar to previous best
## Run 371 stress 0.006341056 
## ... Procrustes: rmse 0.0001395778  max resid 0.0003231584 
## ... Similar to previous best
## Run 372 stress 0.006341117 
## ... Procrustes: rmse 0.0001699441  max resid 0.0003865198 
## ... Similar to previous best
## Run 373 stress 0.00636505 
## ... Procrustes: rmse 0.006748529  max resid 0.01610787 
## Run 374 stress 0.006363195 
## ... Procrustes: rmse 0.006253822  max resid 0.01492129 
## Run 375 stress 0.006365097 
## ... Procrustes: rmse 0.006759492  max resid 0.01613417 
## Run 376 stress 0.006341078 
## ... Procrustes: rmse 0.0001554382  max resid 0.000356757 
## ... Similar to previous best
## Run 377 stress 0.006341155 
## ... Procrustes: rmse 0.0001929138  max resid 0.0004336369 
## ... Similar to previous best
## Run 378 stress 0.00634111 
## ... Procrustes: rmse 0.00016437  max resid 0.0003749811 
## ... Similar to previous best
## Run 379 stress 0.006363239 
## ... Procrustes: rmse 0.006328512  max resid 0.01510043 
## Run 380 stress 0.006362645 
## ... Procrustes: rmse 0.0061908  max resid 0.01477024 
## Run 381 stress 0.006340965 
## ... Procrustes: rmse 7.027195e-05  max resid 0.0001674773 
## ... Similar to previous best
## Run 382 stress 0.006341119 
## ... Procrustes: rmse 0.0001794382  max resid 0.0004060912 
## ... Similar to previous best
## Run 383 stress 0.006341228 
## ... Procrustes: rmse 0.0002273311  max resid 0.0005039447 
## ... Similar to previous best
## Run 384 stress 0.006341064 
## ... Procrustes: rmse 0.000147304  max resid 0.0003397017 
## ... Similar to previous best
## Run 385 stress 0.006365154 
## ... Procrustes: rmse 0.006772403  max resid 0.01616515 
## Run 386 stress 0.00634099 
## ... Procrustes: rmse 9.464602e-05  max resid 0.000222551 
## ... Similar to previous best
## Run 387 stress 0.006341139 
## ... Procrustes: rmse 0.0001898287  max resid 0.0004273761 
## ... Similar to previous best
## Run 388 stress 0.006340918 
## ... Procrustes: rmse 1.670834e-05  max resid 4.3424e-05 
## ... Similar to previous best
## Run 389 stress 0.006365068 
## ... Procrustes: rmse 0.006746498  max resid 0.01610297 
## Run 390 stress 0.006341034 
## ... Procrustes: rmse 0.0001274079  max resid 0.0002966691 
## ... Similar to previous best
## Run 391 stress 0.006341057 
## ... Procrustes: rmse 0.0001426244  max resid 0.0003297089 
## ... Similar to previous best
## Run 392 stress 0.006341067 
## ... Procrustes: rmse 0.000149443  max resid 0.0003442646 
## ... Similar to previous best
## Run 393 stress 0.006341016 
## ... Procrustes: rmse 0.0001144979  max resid 0.0002680339 
## ... Similar to previous best
## Run 394 stress 0.006364008 
## ... Procrustes: rmse 0.006493854  max resid 0.0154969 
## Run 395 stress 0.006341116 
## ... Procrustes: rmse 0.0001773676  max resid 0.0004018439 
## ... Similar to previous best
## Run 396 stress 0.006362019 
## ... Procrustes: rmse 0.006042592  max resid 0.01441495 
## Run 397 stress 0.006341133 
## ... Procrustes: rmse 0.0001830037  max resid 0.0004133622 
## ... Similar to previous best
## Run 398 stress 0.2917584 
## Run 399 stress 0.006341081 
## ... Procrustes: rmse 0.00015743  max resid 0.0003608766 
## ... Similar to previous best
## Run 400 stress 0.006341035 
## ... Procrustes: rmse 0.000128336  max resid 0.0002987912 
## ... Similar to previous best
## Run 401 stress 0.006341065 
## ... Procrustes: rmse 0.0001477248  max resid 0.0003406001 
## ... Similar to previous best
## Run 402 stress 0.006341197 
## ... Procrustes: rmse 0.0002146547  max resid 0.0004780007 
## ... Similar to previous best
## Run 403 stress 0.006364559 
## ... Procrustes: rmse 0.006606762  max resid 0.01576775 
## Run 404 stress 0.006341097 
## ... Procrustes: rmse 0.0001658305  max resid 0.0003781668 
## ... Similar to previous best
## Run 405 stress 0.006350868 
## ... Procrustes: rmse 0.003213605  max resid 0.007644609 
## ... Similar to previous best
## Run 406 stress 0.006363033 
## ... Procrustes: rmse 0.00628158  max resid 0.01498789 
## Run 407 stress 0.00634119 
## ... Procrustes: rmse 0.0002097789  max resid 0.0004680207 
## ... Similar to previous best
## Run 408 stress 0.006341056 
## ... Procrustes: rmse 0.0001417262  max resid 0.0003277809 
## ... Similar to previous best
## Run 409 stress 0.006368049 
## ... Procrustes: rmse 0.007426034  max resid 0.01773418 
## Run 410 stress 0.006361236 
## ... Procrustes: rmse 0.005858014  max resid 0.01397258 
## Run 411 stress 0.00636153 
## ... Procrustes: rmse 0.00592744  max resid 0.01413896 
## Run 412 stress 0.006341013 
## ... Procrustes: rmse 0.0001074721  max resid 0.0002522428 
## ... Similar to previous best
## Run 413 stress 0.00634102 
## ... Procrustes: rmse 0.0001162227  max resid 0.0002716278 
## ... Similar to previous best
## Run 414 stress 0.006341013 
## ... Procrustes: rmse 0.0001103865  max resid 0.0002585408 
## ... Similar to previous best
## Run 415 stress 0.0063411 
## ... Procrustes: rmse 0.0001667477  max resid 0.0003800064 
## ... Similar to previous best
## Run 416 stress 0.006341021 
## ... Procrustes: rmse 0.0001180988  max resid 0.0002759952 
## ... Similar to previous best
## Run 417 stress 0.006341043 
## ... Procrustes: rmse 0.0001317375  max resid 0.0003061224 
## ... Similar to previous best
## Run 418 stress 0.006340953 
## ... Procrustes: rmse 6.04017e-05  max resid 0.0001430095 
## ... Similar to previous best
## Run 419 stress 0.006341129 
## ... Procrustes: rmse 0.0001847975  max resid 0.0004170668 
## ... Similar to previous best
## Run 420 stress 0.006341156 
## ... Procrustes: rmse 0.0001989419  max resid 0.0004460081 
## ... Similar to previous best
## Run 421 stress 0.00636488 
## ... Procrustes: rmse 0.006709241  max resid 0.01601361 
## Run 422 stress 0.006341113 
## ... Procrustes: rmse 0.0001761153  max resid 0.0003992791 
## ... Similar to previous best
## Run 423 stress 0.006341027 
## ... Procrustes: rmse 0.0001227532  max resid 0.0002866584 
## ... Similar to previous best
## Run 424 stress 0.00636241 
## ... Procrustes: rmse 0.006135242  max resid 0.01463704 
## Run 425 stress 0.006341088 
## ... Procrustes: rmse 0.0001605992  max resid 0.0003673941 
## ... Similar to previous best
## Run 426 stress 0.006366603 
## ... Procrustes: rmse 0.007066046  max resid 0.01686978 
## Run 427 stress 0.006341001 
## ... Procrustes: rmse 0.0001030288  max resid 0.0002428793 
## ... Similar to previous best
## Run 428 stress 0.006365614 
## ... Procrustes: rmse 0.006869405  max resid 0.01639791 
## Run 429 stress 0.006361687 
## ... Procrustes: rmse 0.005964613  max resid 0.01422805 
## Run 430 stress 0.006362058 
## ... Procrustes: rmse 0.006051849  max resid 0.01443715 
## Run 431 stress 0.006341199 
## ... Procrustes: rmse 0.0002165024  max resid 0.0004817957 
## ... Similar to previous best
## Run 432 stress 0.006341035 
## ... Procrustes: rmse 0.0001284852  max resid 0.0002991025 
## ... Similar to previous best
## Run 433 stress 0.006341145 
## ... Procrustes: rmse 0.0001878604  max resid 0.000423227 
## ... Similar to previous best
## Run 434 stress 0.006365386 
## ... Procrustes: rmse 0.006824481  max resid 0.0162901 
## Run 435 stress 0.3578484 
## Run 436 stress 0.006341009 
## ... Procrustes: rmse 0.0001088509  max resid 0.000255098 
## ... Similar to previous best
## Run 437 stress 0.006359424 
## ... Procrustes: rmse 0.00542325  max resid 0.01293102 
## Run 438 stress 0.006364228 
## ... Procrustes: rmse 0.006385875  max resid 0.01523782 
## Run 439 stress 0.006341116 
## ... Procrustes: rmse 0.0001744289  max resid 0.0003957943 
## ... Similar to previous best
## Run 440 stress 0.006341066 
## ... Procrustes: rmse 0.0001473972  max resid 0.0003398834 
## ... Similar to previous best
## Run 441 stress 0.006341112 
## ... Procrustes: rmse 0.0001708757  max resid 0.0003884388 
## ... Similar to previous best
## Run 442 stress 0.006341062 
## ... Procrustes: rmse 0.0001459223  max resid 0.0003367685 
## ... Similar to previous best
## Run 443 stress 0.00636472 
## ... Procrustes: rmse 0.006672783  max resid 0.01592614 
## Run 444 stress 0.00636104 
## ... Procrustes: rmse 0.005811753  max resid 0.01386173 
## Run 445 stress 0.00636245 
## ... Procrustes: rmse 0.006014066  max resid 0.01434635 
## Run 446 stress 0.006340988 
## ... Procrustes: rmse 9.236216e-05  max resid 0.0002175707 
## ... Similar to previous best
## Run 447 stress 0.3409171 
## Run 448 stress 0.00636184 
## ... Procrustes: rmse 0.006001539  max resid 0.01431656 
## Run 449 stress 0.006341051 
## ... Procrustes: rmse 0.0001373467  max resid 0.0003183315 
## ... Similar to previous best
## Run 450 stress 0.006340996 
## ... Procrustes: rmse 9.967849e-05  max resid 0.0002341271 
## ... Similar to previous best
## Run 451 stress 0.006362115 
## ... Procrustes: rmse 0.006066246  max resid 0.01447165 
## Run 452 stress 0.006341154 
## ... Procrustes: rmse 0.0001960981  max resid 0.0004401954 
## ... Similar to previous best
## Run 453 stress 0.006340982 
## ... Procrustes: rmse 8.316622e-05  max resid 0.0001708088 
## ... Similar to previous best
## Run 454 stress 0.006340947 
## ... Procrustes: rmse 5.113376e-05  max resid 0.0001207963 
## ... Similar to previous best
## Run 455 stress 0.006341119 
## ... Procrustes: rmse 0.0001792702  max resid 0.0004057392 
## ... Similar to previous best
## Run 456 stress 0.006362665 
## ... Procrustes: rmse 0.006189202  max resid 0.01476641 
## Run 457 stress 0.006341141 
## ... Procrustes: rmse 0.0001897255  max resid 0.0004271558 
## ... Similar to previous best
## Run 458 stress 0.006354556 
## ... Procrustes: rmse 0.004199697  max resid 0.01000254 
## Run 459 stress 0.006341012 
## ... Procrustes: rmse 0.0001103421  max resid 0.0002584306 
## ... Similar to previous best
## Run 460 stress 0.006341141 
## ... Procrustes: rmse 0.0001854666  max resid 0.0004183225 
## ... Similar to previous best
## Run 461 stress 0.006341105 
## ... Procrustes: rmse 0.0001662221  max resid 0.0003789183 
## ... Similar to previous best
## Run 462 stress 0.006344487 
## ... Procrustes: rmse 0.001489895  max resid 0.003520671 
## ... Similar to previous best
## Run 463 stress 0.006341198 
## ... Procrustes: rmse 0.0002121339  max resid 0.0004728026 
## ... Similar to previous best
## Run 464 stress 0.006341111 
## ... Procrustes: rmse 0.0001746643  max resid 0.0003962943 
## ... Similar to previous best
## Run 465 stress 0.006341142 
## ... Procrustes: rmse 0.0001915324  max resid 0.0004308476 
## ... Similar to previous best
## Run 466 stress 0.006341103 
## ... Procrustes: rmse 0.0001701727  max resid 0.0003870841 
## ... Similar to previous best
## Run 467 stress 0.006352671 
## ... Procrustes: rmse 0.003731144  max resid 0.008882024 
## ... Similar to previous best
## Run 468 stress 0.006340988 
## ... Procrustes: rmse 9.236171e-05  max resid 0.0002172428 
## ... Similar to previous best
## Run 469 stress 0.006365446 
## ... Procrustes: rmse 0.006839124  max resid 0.01632524 
## Run 470 stress 0.006341002 
## ... Procrustes: rmse 0.0001040253  max resid 0.0002442844 
## ... Similar to previous best
## Run 471 stress 0.006341137 
## ... Procrustes: rmse 0.0001811507  max resid 0.0004095149 
## ... Similar to previous best
## Run 472 stress 0.006366042 
## ... Procrustes: rmse 0.006970949  max resid 0.01664158 
## Run 473 stress 0.006341056 
## ... Procrustes: rmse 0.000137603  max resid 0.0003188402 
## ... Similar to previous best
## Run 474 stress 0.006341015 
## ... Procrustes: rmse 0.0001141196  max resid 0.0002670548 
## ... Similar to previous best
## Run 475 stress 0.006341105 
## ... Procrustes: rmse 0.00017128  max resid 0.0003893593 
## ... Similar to previous best
## Run 476 stress 0.006341059 
## ... Procrustes: rmse 0.0001429877  max resid 0.0003304845 
## ... Similar to previous best
## Run 477 stress 0.006341026 
## ... Procrustes: rmse 0.0001218224  max resid 0.0002843357 
## ... Similar to previous best
## Run 478 stress 0.006362624 
## ... Procrustes: rmse 0.006175959  max resid 0.01473463 
## Run 479 stress 0.006341142 
## ... Procrustes: rmse 0.0001913896  max resid 0.0004305564 
## ... Similar to previous best
## Run 480 stress 0.006341118 
## ... Procrustes: rmse 0.0001785202  max resid 0.0004042031 
## ... Similar to previous best
## Run 481 stress 0.006341056 
## ... Procrustes: rmse 0.0001387965  max resid 0.0003213977 
## ... Similar to previous best
## Run 482 stress 0.00634107 
## ... Procrustes: rmse 0.0001505611  max resid 0.0003465729 
## ... Similar to previous best
## Run 483 stress 0.00634115 
## ... Procrustes: rmse 0.0001960437  max resid 0.000440084 
## ... Similar to previous best
## Run 484 stress 0.006341155 
## ... Procrustes: rmse 0.000198522  max resid 0.0004451624 
## ... Similar to previous best
## Run 485 stress 0.006363341 
## ... Procrustes: rmse 0.006343088  max resid 0.01513534 
## Run 486 stress 0.006360229 
## ... Procrustes: rmse 0.005611733  max resid 0.0133825 
## Run 487 stress 0.006352349 
## ... Procrustes: rmse 0.003643307  max resid 0.008672005 
## ... Similar to previous best
## Run 488 stress 0.006340951 
## ... Procrustes: rmse 5.809469e-05  max resid 0.0001411914 
## ... Similar to previous best
## Run 489 stress 0.006359069 
## ... Procrustes: rmse 0.005338021  max resid 0.0127269 
## Run 490 stress 0.006363039 
## ... Procrustes: rmse 0.006283212  max resid 0.0149918 
## Run 491 stress 0.006365663 
## ... Procrustes: rmse 0.006887984  max resid 0.01644248 
## Run 492 stress 0.006341054 
## ... Procrustes: rmse 0.0001410323  max resid 0.0003262753 
## ... Similar to previous best
## Run 493 stress 0.006341171 
## ... Procrustes: rmse 0.0003832935  max resid 0.0008796689 
## ... Similar to previous best
## Run 494 stress 0.006341115 
## ... Procrustes: rmse 0.0001726507  max resid 0.0003921292 
## ... Similar to previous best
## Run 495 stress 0.006341354 
## ... Procrustes: rmse 0.0004824165  max resid 0.001112587 
## ... Similar to previous best
## Run 496 stress 0.006341 
## ... Procrustes: rmse 0.0001024905  max resid 0.0002407189 
## ... Similar to previous best
## Run 497 stress 0.006349121 
## ... Procrustes: rmse 0.002787876  max resid 0.006627045 
## ... Similar to previous best
## Run 498 stress 0.006364779 
## ... Procrustes: rmse 0.006686249  max resid 0.01595844 
## Run 499 stress 0.006363403 
## ... Procrustes: rmse 0.006348094  max resid 0.01514738 
## Run 500 stress 0.00634107 
## ... Procrustes: rmse 0.000148985  max resid 0.0003432236 
## ... Similar to previous best
## *** Best solution repeated 165 times

Determine stratification homogeneity using environmental/biogeographical distances

We use betadisper to determine homogeneity of the environmental/biogeographical distances based on the stratification category. Is the dispersion of environmental/biogeographical distances similar within stratification categories?

### Environmental
groupse <- env[-c(9,16,18,20),19]
enve_bd <- betadisper(enve_dist, groupse)
anova(enve_bd)
## Analysis of Variance Table
## 
## Response: Distances
##           Df Sum Sq Mean Sq F value Pr(>F)  
## Groups     2 2.6595  1.3298  6.0582  0.011 *
## Residuals 16 3.5120  0.2195                 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
permutest(enve_bd, pairwise = TRUE)
## 
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
## 
## Response: Distances
##           Df Sum Sq Mean Sq      F N.Perm Pr(>F)  
## Groups     2 2.6595  1.3298 6.0582    999  0.013 *
## Residuals 16 3.5120  0.2195                       
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
##               Mixed    Ocean Stratified
## Mixed               0.147000      0.036
## Ocean      0.146462               0.012
## Stratified 0.034379 0.013298
(enve_bd.HSD <- TukeyHSD(enve_bd))
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                        diff         lwr       upr     p adj
## Ocean-Mixed      -0.4426265 -1.26105575 0.3758028 0.3665113
## Stratified-Mixed  0.5734890 -0.03096109 1.1779390 0.0643192
## Stratified-Ocean  1.0161155  0.19768622 1.8345447 0.0144650
boxplot(enve_bd)

### Biogeographic
groupsb <- env[-c(8,20),19]
envb_bd <- betadisper(envb_dist, groupsb)
anova(envb_bd)
## Analysis of Variance Table
## 
## Response: Distances
##           Df Sum Sq Mean Sq F value  Pr(>F)  
## Groups     2  9.293  4.6467  2.6437 0.09848 .
## Residuals 18 31.638  1.7577                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
permutest(envb_bd, pairwise = TRUE)
## 
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
## 
## Response: Distances
##           Df Sum Sq Mean Sq      F N.Perm Pr(>F)  
## Groups     2  9.293  4.6467 2.6437    999  0.048 *
## Residuals 18 31.638  1.7577                       
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## 
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
##              Mixed   Ocean Stratified
## Mixed              0.06600      0.705
## Ocean      0.12207              0.070
## Stratified 0.53863 0.12721
(envb_bd.HSD <- TukeyHSD(envb_bd))
##   Tukey multiple comparisons of means
##     95% family-wise confidence level
## 
## Fit: aov(formula = distances ~ group, data = df)
## 
## $group
##                      diff        lwr       upr     p adj
## Ocean-Mixed       1.55171 -0.3307344 3.4341546 0.1171621
## Stratified-Mixed  0.16319 -1.5879737 1.9143538 0.9693514
## Stratified-Ocean -1.38852 -3.2158566 0.4388165 0.1565488
boxplot(envb_bd)

# Determine stratification dissimilarity using environmental/biogeographical distances We use adonis to determine if dissimilarities of species environmental/biogeographical distances by stratification categories are significant and how much of the variation is explained by environmental/biogeographical dissimilarities.

### Environmental
enve_pmc <- adonis2(enve_dist ~ env[-c(9,16,18,20),19], permutations = 999)
enve_pmc
## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
## 
## adonis2(formula = enve_dist ~ env[-c(9, 16, 18, 20), 19], permutations = 999)
##                            Df SumOfSqs      R2      F Pr(>F)    
## env[-c(9, 16, 18, 20), 19]  2   35.341 0.65446 15.152  0.001 ***
## Residual                   16   18.659 0.34554                  
## Total                      18   54.000 1.00000                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
# By stratifcation
enve_pmc_pair <- pairwise.adonis(enve_dist, env[-c(9,16,18,20),19], p.adjust.m = "bonferroni", perm = 999)
enve_pmc_pair
##                 pairs Df SumsOfSqs   F.Model        R2 p.value p.adjusted sig
## 1 Stratified vs Mixed  1 24.969657 18.950602 0.5751216   0.001      0.003   *
## 2 Stratified vs Ocean  1 23.134197 14.727147 0.6206877   0.005      0.015   .
## 3      Mixed vs Ocean  1  1.589454  3.021701 0.2513539   0.088      0.264
### Biogeographic
envb_pmc <- adonis2(envb_dist ~ env[-c(8,20),19], permutations = 999)
envb_pmc
## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
## 
## adonis2(formula = envb_dist ~ env[-c(8, 20), 19], permutations = 999)
##                    Df SumOfSqs      R2      F Pr(>F)    
## env[-c(8, 20), 19]  2   48.891 0.39926 5.9816  0.001 ***
## Residual           18   73.562 0.60074                  
## Total              20  122.454 1.00000                  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
# By stratifcation
envb_pmc_pair <- pairwise.adonis(envb_dist, env[-c(8,20),19], p.adjust.m = "bonferroni", perm = 999)
envb_pmc_pair
##                 pairs Df SumsOfSqs  F.Model        R2 p.value p.adjusted sig
## 1 Stratified vs Mixed  1  10.20361 7.086195 0.3527893   0.007      0.021   .
## 2 Stratified vs Ocean  1  40.90496 7.473867 0.3837896   0.002      0.006   *
## 3      Mixed vs Ocean  1  23.15310 4.060068 0.2695916   0.013      0.039   .

Envfit trait influence on environmental/biogeographical distances

We use envfit to determine significantly correlated functional variables to our environmental/biogeographical NMDS. We will use these results, if significant, in our figure.

### Environmental
# All sites for figure
enve_ef <- envfit(enve_NMDS, FD_total_env[-c(9,16,18,20),c(54:55)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
enve_ef
## 
## ***FACTORS:
## 
## Centroids:
##        NMDS1   NMDS2
## B2s  -0.0712 -0.8103
## B3f   0.6100  0.2397
## B4e  -1.9470 -0.3737
## Ono  -1.9370 -0.6037
## Oyes  0.5165  0.1610
## 
## Goodness of fit:
##       r2  Pr(>r)  
## B 0.4513 0.01399 *
## O 0.4159 0.02398 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
enve_efp <- p.adjust.envfit(enve_ef)
## Adjustment of significance by bonferroni method
enve_efp
## 
## ***FACTORS:
## 
## Centroids:
##        NMDS1   NMDS2
## B2s  -0.0712 -0.8103
## B3f   0.6100  0.2397
## B4e  -1.9470 -0.3737
## Ono  -1.9370 -0.6037
## Oyes  0.5165  0.1610
## 
## Goodness of fit:
##       r2  Pr(>r)  
## B 0.4513 0.02797 *
## O 0.4159 0.04795 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# All sites by stratification
envea_ef <- envfit(enve_NMDS, FD_total_env[-c(9,16,18,20),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
envea_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)  
## MaxLengthTL       0.38726  0.92197 0.2545  0.164  
## Troph            -0.98542 -0.17016 0.6098  0.121  
## DepthMin          0.11233 -0.99367 0.0343  0.776  
## DepthMax          0.55072  0.83469 0.4131  0.099 .
## TempPrefMin       0.72291 -0.69095 0.1232  0.887  
## TempPrefMax      -0.37699 -0.92622 0.1176  0.348  
## Weight            0.33232  0.94317 0.1191  0.289  
## CaudalFinLength   0.08773  0.99614 0.0656  0.532  
## DorsalSpinesMean  0.85784  0.51392 0.6120  0.071 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -0.0712 -0.8103
## BodyShapeI3f         0.6100  0.2397
## BodyShapeI4e        -1.9470 -0.3737
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.9370 -0.6037
## OperculumPresentyes  0.5165  0.1610
## FeedingPathb         0.2063  0.0528
## FeedingPathp        -1.7534 -0.4488
## RepGuild11b         -1.7534 -0.4488
## RepGuild12g         -2.1183 -0.4960
## RepGuild13n          0.5162  0.1260
## RepGuild22eb        -1.6415 -1.4438
## RepGuild23n         -2.1183 -0.4960
## RepGuild26s          0.3674  0.1522
## ParentalCare3p      -1.5812 -0.2305
## ParentalCare4n       0.7298  0.1064
## WaterPref1s          0.6173  0.2224
## WaterPref3a         -1.7286 -0.6226
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## BodyShapeI       0.4513  0.015 *
## DemersPelag      0.0000  1.000  
## OperculumPresent 0.4159  0.020 *
## FeedingPath      0.1460  0.374  
## RepGuild1        0.4039  0.101  
## RepGuild2        0.3345  0.059 .
## ParentalCare     0.4465  0.316  
## WaterPref        0.4568  0.119  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envea_efp <- p.adjust.envfit(envea_ef)
## Adjustment of significance by bonferroni method
envea_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.38726  0.92197 0.2545      1
## Troph            -0.98542 -0.17016 0.6098      1
## DepthMin          0.11233 -0.99367 0.0343      1
## DepthMax          0.55072  0.83469 0.4131      1
## TempPrefMin       0.72291 -0.69095 0.1232      1
## TempPrefMax      -0.37699 -0.92622 0.1176      1
## Weight            0.33232  0.94317 0.1191      1
## CaudalFinLength   0.08773  0.99614 0.0656      1
## DorsalSpinesMean  0.85784  0.51392 0.6120      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -0.0712 -0.8103
## BodyShapeI3f         0.6100  0.2397
## BodyShapeI4e        -1.9470 -0.3737
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.9370 -0.6037
## OperculumPresentyes  0.5165  0.1610
## FeedingPathb         0.2063  0.0528
## FeedingPathp        -1.7534 -0.4488
## RepGuild11b         -1.7534 -0.4488
## RepGuild12g         -2.1183 -0.4960
## RepGuild13n          0.5162  0.1260
## RepGuild22eb        -1.6415 -1.4438
## RepGuild23n         -2.1183 -0.4960
## RepGuild26s          0.3674  0.1522
## ParentalCare3p      -1.5812 -0.2305
## ParentalCare4n       0.7298  0.1064
## WaterPref1s          0.6173  0.2224
## WaterPref3a         -1.7286 -0.6226
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.4513  0.255
## DemersPelag      0.0000  1.000
## OperculumPresent 0.4159  0.340
## FeedingPath      0.1460  1.000
## RepGuild1        0.4039  1.000
## RepGuild2        0.3345  1.000
## ParentalCare     0.4465  1.000
## WaterPref        0.4568  1.000
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
envems_ef <- envfit(envems_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10,19)], permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
envems_ef
## 
## ***VECTORS
## 
##          NMDS1    NMDS2    r2 Pr(>r)  
## Troph -0.86893 -0.49494 0.608  0.041 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -1.4705 -1.3732
## BodyShapeI3f         0.7485  0.2253
## BodyShapeI4e        -1.6908 -0.2764
## OperculumPresentno  -1.6936 -0.5096
## OperculumPresentyes  0.5645  0.1699
## RepGuild22eb        -1.4705 -1.3732
## RepGuild23n         -1.8914 -0.3776
## RepGuild26s          0.4041  0.1637
## 
## Goodness of fit:
##                      r2 Pr(>r)   
## BodyShapeI       0.5560  0.009 **
## OperculumPresent 0.4121  0.028 * 
## RepGuild2        0.3448  0.035 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envems_efp <- p.adjust.envfit(envems_ef)
## Adjustment of significance by bonferroni method
envems_efp
## 
## ***VECTORS
## 
##          NMDS1    NMDS2    r2 Pr(>r)
## Troph -0.86893 -0.49494 0.608  0.164
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -1.4705 -1.3732
## BodyShapeI3f         0.7485  0.2253
## BodyShapeI4e        -1.6908 -0.2764
## OperculumPresentno  -1.6936 -0.5096
## OperculumPresentyes  0.5645  0.1699
## RepGuild22eb        -1.4705 -1.3732
## RepGuild23n         -1.8914 -0.3776
## RepGuild26s          0.4041  0.1637
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## BodyShapeI       0.5560  0.036 *
## OperculumPresent 0.4121  0.112  
## RepGuild2        0.3448  0.140  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
enveom_ef <- envfit(enveom_NMDS, FD_total_env[c(3,6:8,10:11,13:15,19,23),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
enveom_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL      -0.79858  0.60189 0.2513  0.414
## Troph            -0.69774  0.71635 0.5557  0.173
## DepthMin          0.83771 -0.54611 0.2281  0.360
## DepthMax         -0.86510  0.50161 0.0442  0.852
## TempPrefMin       0.16112 -0.98693 0.0599  0.756
## TempPrefMax       0.01560  0.99988 0.0119  0.954
## Weight           -0.17122  0.98523 0.1387  0.501
## CaudalFinLength  -0.99933 -0.03647 0.3170  0.275
## DorsalSpinesMean  0.78922 -0.61411 0.1792  0.489
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.4404 -0.0632
## BodyShapeI3f        -0.0440  0.0063
## DemersPelag1r        0.0000  0.0000
## OperculumPresentyes  0.0000  0.0000
## FeedingPathb         0.0000  0.0000
## RepGuild13n          0.0000  0.0000
## RepGuild26s          0.0000  0.0000
## ParentalCare4n       0.0000  0.0000
## WaterPref1s          0.0000  0.0000
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.0356      1
## DemersPelag      0.0000      1
## OperculumPresent 0.0000      1
## FeedingPath      0.0000      1
## RepGuild1        0.0000      1
## RepGuild2        0.0000      1
## ParentalCare     0.0000      1
## WaterPref        0.0000      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
enveom_efp <- p.adjust.envfit(enveom_ef)
## Adjustment of significance by bonferroni method
enveom_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL      -0.79858  0.60189 0.2513      1
## Troph            -0.69774  0.71635 0.5557      1
## DepthMin          0.83771 -0.54611 0.2281      1
## DepthMax         -0.86510  0.50161 0.0442      1
## TempPrefMin       0.16112 -0.98693 0.0599      1
## TempPrefMax       0.01560  0.99988 0.0119      1
## Weight           -0.17122  0.98523 0.1387      1
## CaudalFinLength  -0.99933 -0.03647 0.3170      1
## DorsalSpinesMean  0.78922 -0.61411 0.1792      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.4404 -0.0632
## BodyShapeI3f        -0.0440  0.0063
## DemersPelag1r        0.0000  0.0000
## OperculumPresentyes  0.0000  0.0000
## FeedingPathb         0.0000  0.0000
## RepGuild13n          0.0000  0.0000
## RepGuild26s          0.0000  0.0000
## ParentalCare4n       0.0000  0.0000
## WaterPref1s          0.0000  0.0000
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.0356      1
## DemersPelag      0.0000      1
## OperculumPresent 0.0000      1
## FeedingPath      0.0000      1
## RepGuild1        0.0000      1
## RepGuild2        0.0000      1
## ParentalCare     0.0000      1
## WaterPref        0.0000      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
enveso_ef <- envfit(enveso_NMDS, FD_total_env[c(1:2,4,5,7,11:12,17,19,21:22),c(6,8,19)], permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
enveso_ef
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.6527 -0.6941
## BodyShapeI3f         0.7703  0.5322
## BodyShapeI4e        -1.2893 -0.3182
## OperculumPresentno  -1.2190 -0.5445
## OperculumPresentyes  0.6966  0.3111
## RepGuild22eb        -0.8320 -1.3628
## RepGuild23n         -1.5060 -0.4656
## RepGuild26s          0.4805  0.2868
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## BodyShapeI       0.3964  0.019 *
## OperculumPresent 0.3351  0.029 *
## RepGuild2        0.2998  0.034 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
enveso_efp <- p.adjust.envfit(enveso_ef)
## Adjustment of significance by bonferroni method
enveso_efp
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.6527 -0.6941
## BodyShapeI3f         0.7703  0.5322
## BodyShapeI4e        -1.2893 -0.3182
## OperculumPresentno  -1.2190 -0.5445
## OperculumPresentyes  0.6966  0.3111
## RepGuild22eb        -0.8320 -1.3628
## RepGuild23n         -1.5060 -0.4656
## RepGuild26s          0.4805  0.2868
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## BodyShapeI       0.3964  0.057 .
## OperculumPresent 0.3351  0.087 .
## RepGuild2        0.2998  0.102  
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
### Biogeographic
# All sites for figure
envb_ef <- envfit(envb_NMDS, FD_total_env[-c(8,20),c(58,67)], permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
envb_ef
## 
## ***VECTORS
## 
##      NMDS1    NMDS2     r2 Pr(>r)
## T -0.44636 -0.89485 0.6512  0.161
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##       NMDS1   NMDS2
## W1s  0.3441  0.3821
## W3a -1.1013 -1.2226
## 
## Goodness of fit:
##       r2 Pr(>r)  
## W 0.1855  0.018 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envb_efp <- p.adjust.envfit(envb_ef)
## Adjustment of significance by bonferroni method
envb_efp
## 
## ***VECTORS
## 
##      NMDS1    NMDS2     r2 Pr(>r)
## T -0.44636 -0.89485 0.6512  0.322
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##       NMDS1   NMDS2
## W1s  0.3441  0.3821
## W3a -1.1013 -1.2226
## 
## Goodness of fit:
##       r2 Pr(>r)  
## W 0.1855  0.036 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# All sites by stratification
envba_ef <- envfit(envb_NMDS, FD_total_env[-c(8,20),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
envba_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.18649  0.98246 0.0236  0.601
## Troph            -0.44636 -0.89485 0.6512  0.155
## DepthMin          0.26611  0.96394 0.0213  0.568
## DepthMax          0.41126  0.91152 0.1295  0.284
## TempPrefMin       0.17525  0.98452 0.1889  0.475
## TempPrefMax      -0.97424 -0.22553 0.0225  0.525
## Weight           -0.96913  0.24656 0.0132  0.844
## CaudalFinLength  -0.62841 -0.77788 0.0030  0.975
## DorsalSpinesMean  0.53856  0.84259 0.3114  0.608
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.0089  0.1071
## BodyShapeI3f         0.2696  0.2241
## BodyShapeI4e        -0.9501 -0.8646
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.0608 -1.2424
## OperculumPresentyes  0.2496  0.2923
## FeedingPathb         0.0779  0.1295
## FeedingPathp        -0.7404 -1.2302
## RepGuild11b         -0.7404 -1.2302
## RepGuild12g         -1.2944 -0.4555
## RepGuild13n          0.2394  0.1983
## RepGuild22eb        -1.1860 -1.8664
## RepGuild23n         -1.2944 -0.4555
## RepGuild26s          0.2097  0.1543
## ParentalCare3p      -0.8603 -1.0217
## ParentalCare4n       0.3441  0.4087
## WaterPref1s          0.3441  0.3821
## WaterPref3a         -1.1013 -1.2226
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## BodyShapeI       0.0872  0.752  
## DemersPelag      0.0000  1.000  
## OperculumPresent 0.1377  0.115  
## FeedingPath      0.0476  0.393  
## RepGuild1        0.0995  0.434  
## RepGuild2        0.1031  0.144  
## ParentalCare     0.1565  0.302  
## WaterPref        0.1855  0.023 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envba_efp <- p.adjust.envfit(envba_ef)
## Adjustment of significance by bonferroni method
envba_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.18649  0.98246 0.0236      1
## Troph            -0.44636 -0.89485 0.6512      1
## DepthMin          0.26611  0.96394 0.0213      1
## DepthMax          0.41126  0.91152 0.1295      1
## TempPrefMin       0.17525  0.98452 0.1889      1
## TempPrefMax      -0.97424 -0.22553 0.0225      1
## Weight           -0.96913  0.24656 0.0132      1
## CaudalFinLength  -0.62841 -0.77788 0.0030      1
## DorsalSpinesMean  0.53856  0.84259 0.3114      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s         0.0089  0.1071
## BodyShapeI3f         0.2696  0.2241
## BodyShapeI4e        -0.9501 -0.8646
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.0608 -1.2424
## OperculumPresentyes  0.2496  0.2923
## FeedingPathb         0.0779  0.1295
## FeedingPathp        -0.7404 -1.2302
## RepGuild11b         -0.7404 -1.2302
## RepGuild12g         -1.2944 -0.4555
## RepGuild13n          0.2394  0.1983
## RepGuild22eb        -1.1860 -1.8664
## RepGuild23n         -1.2944 -0.4555
## RepGuild26s          0.2097  0.1543
## ParentalCare3p      -0.8603 -1.0217
## ParentalCare4n       0.3441  0.4087
## WaterPref1s          0.3441  0.3821
## WaterPref3a         -1.1013 -1.2226
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.0872  1.000
## DemersPelag      0.0000  1.000
## OperculumPresent 0.1377  1.000
## FeedingPath      0.0476  1.000
## RepGuild1        0.0995  1.000
## RepGuild2        0.1031  1.000
## ParentalCare     0.1565  1.000
## WaterPref        0.1855  0.391
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
envbms_ef <- envfit(envbms_NMDS, FD_total_env[c(1:6,10,12:15,17,21:23),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
envbms_ef
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.57614  0.81735 0.0924  0.592
## Troph            -0.84701 -0.53157 0.4169  0.175
## DepthMin          0.73778  0.67504 0.0336  0.810
## DepthMax          0.62926  0.77720 0.2900  0.215
## TempPrefMin       0.94199  0.33565 0.0941  0.650
## TempPrefMax      -0.27318 -0.96196 0.0783  0.559
## Weight            0.10132  0.99485 0.0437  0.695
## CaudalFinLength   0.53420  0.84536 0.0180  0.885
## DorsalSpinesMean  0.66894  0.74331 0.1653  0.674
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -1.9564 -0.2897
## BodyShapeI3f         0.4935  0.0919
## BodyShapeI4e        -0.7447 -0.1573
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.2058 -0.2431
## OperculumPresentyes  0.4385  0.0884
## FeedingPathb         0.1780 -0.0238
## FeedingPathp        -1.1571  0.1545
## RepGuild11b         -1.1571  0.1545
## RepGuild12g         -0.2955 -0.5918
## RepGuild13n          0.2641  0.0795
## RepGuild22eb        -1.9564 -0.2897
## RepGuild23n         -0.2955 -0.5918
## RepGuild26s          0.2123  0.1228
## ParentalCare3p      -0.9083 -0.0211
## ParentalCare4n       0.6056  0.0141
## WaterPref1s          0.5920  0.1443
## WaterPref3a         -1.1839 -0.2887
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## BodyShapeI       0.3495  0.204  
## DemersPelag      0.0000  1.000  
## OperculumPresent 0.3297  0.107  
## FeedingPath      0.1256  0.315  
## RepGuild1        0.1773  0.534  
## RepGuild2        0.2200  0.297  
## ParentalCare     0.3298  0.309  
## WaterPref        0.4449  0.066 .
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envbms_efp <- p.adjust.envfit(envbms_ef)
## Adjustment of significance by bonferroni method
envbms_efp
## 
## ***VECTORS
## 
##                     NMDS1    NMDS2     r2 Pr(>r)
## MaxLengthTL       0.57614  0.81735 0.0924      1
## Troph            -0.84701 -0.53157 0.4169      1
## DepthMin          0.73778  0.67504 0.0336      1
## DepthMax          0.62926  0.77720 0.2900      1
## TempPrefMin       0.94199  0.33565 0.0941      1
## TempPrefMax      -0.27318 -0.96196 0.0783      1
## Weight            0.10132  0.99485 0.0437      1
## CaudalFinLength   0.53420  0.84536 0.0180      1
## DorsalSpinesMean  0.66894  0.74331 0.1653      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## BodyShapeI2s        -1.9564 -0.2897
## BodyShapeI3f         0.4935  0.0919
## BodyShapeI4e        -0.7447 -0.1573
## DemersPelag1r        0.0000  0.0000
## OperculumPresentno  -1.2058 -0.2431
## OperculumPresentyes  0.4385  0.0884
## FeedingPathb         0.1780 -0.0238
## FeedingPathp        -1.1571  0.1545
## RepGuild11b         -1.1571  0.1545
## RepGuild12g         -0.2955 -0.5918
## RepGuild13n          0.2641  0.0795
## RepGuild22eb        -1.9564 -0.2897
## RepGuild23n         -0.2955 -0.5918
## RepGuild26s          0.2123  0.1228
## ParentalCare3p      -0.9083 -0.0211
## ParentalCare4n       0.6056  0.0141
## WaterPref1s          0.5920  0.1443
## WaterPref3a         -1.1839 -0.2887
## 
## Goodness of fit:
##                      r2 Pr(>r)
## BodyShapeI       0.3495      1
## DemersPelag      0.0000      1
## OperculumPresent 0.3297      1
## FeedingPath      0.1256      1
## RepGuild1        0.1773      1
## RepGuild2        0.2200      1
## ParentalCare     0.3298      1
## WaterPref        0.4449      1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
envbom_ef <- envfit(envbom_NMDS, FD_total_env[c(3,6:7,9:11,13:16,18:19,23),c(13:14)], permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
envbom_ef
## 
## ***VECTORS
## 
##                 NMDS1     NMDS2     r2 Pr(>r)   
## TempPrefMin -0.050611 -0.998720 0.6070  0.002 **
## TempPrefMax -0.092379 -0.995720 0.4269  0.012 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envbom_efp <- p.adjust.envfit(envbom_ef)
## Adjustment of significance by bonferroni method
envbom_efp
## 
## ***VECTORS
## 
##                 NMDS1     NMDS2     r2 Pr(>r)   
## TempPrefMin -0.050611 -0.998720 0.6070  0.004 **
## TempPrefMax -0.092379 -0.995720 0.4269  0.024 * 
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
envbso_ef <- envfit(envbso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(8,21)], permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
envbso_ef
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## OperculumPresentno  -1.4614 -0.9118
## OperculumPresentyes  0.5846  0.3647
## WaterPref1s          0.8537  0.4933
## WaterPref3a         -1.5367 -0.8879
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## OperculumPresent 0.1931  0.078 .
## WaterPref        0.2848  0.014 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
envbso_efp <- p.adjust.envfit(envbso_ef)
## Adjustment of significance by bonferroni method
envbso_efp
## 
## ***FACTORS:
## 
## Centroids:
##                       NMDS1   NMDS2
## OperculumPresentno  -1.4614 -0.9118
## OperculumPresentyes  0.5846  0.3647
## WaterPref1s          0.8537  0.4933
## WaterPref3a         -1.5367 -0.8879
## 
## Goodness of fit:
##                      r2 Pr(>r)  
## OperculumPresent 0.1931  0.156  
## WaterPref        0.2848  0.028 *
## ---
## Signif. codes:  0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999

Environment/biogeography mantel tests

We used mantel tests to determine significance between the environmental/biogeographical and trait distance matrices.

### Environmental
# All sites
FDe_dist <- gowdis(scaled_FD_total_env[-c(9,16,18,20),c(1:17)])
envea_mant <- mantel(enve_dist, FDe_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
envea_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = enve_dist, ydis = FDe_dist, method = "spearman",      permutations = 999, strata = env[-c(9, 16, 18, 20), 19],      na.rm = TRUE) 
## 
## Mantel statistic r: 0.5905 
##       Significance: 0.098 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.588 0.619 0.637 0.655 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
FDems_dist <- gowdis(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1:17)])
envems_mant <- mantel(envems_dist, FDems_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
envems_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = envems_dist, ydis = FDems_dist, method = "spearman",      permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17,          21:23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.5362 
##       Significance: 0.089 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.527 0.560 0.583 0.599 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Ocean sites and mixed lakes
FDeom_dist <- gowdis(scaled_FD_total_env[c(3,6:8,10:11,13:15,19,23),c(1:7)])
enveom_mant <- mantel(enveom_dist, FDeom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
enveom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = enveom_dist, ydis = FDeom_dist, method = "spearman",      permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15,          19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.3447 
##       Significance: 0.099 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.336 0.448 0.520 0.571 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Stratified lakes and ocean sites
FDeso_dist <- gowdis(scaled_FD_total_env[c(1:2,4,5,7,11:12,17,19,21:22),c(1:17)])
enveso_mant <- mantel(enveso_dist, FDeso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
enveso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = enveso_dist, ydis = FDeso_dist, method = "spearman",      permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17,          19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.2766 
##       Significance: 0.069 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.253 0.292 0.319 0.346 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Adjusted p-values
enve_mant_p <- rbind(envems_mant$signif, enveom_mant$signif, enveso_mant$signif)
enve_mant_p <- enve_mant_p[,1]
enve_mant_p <- p.adjust(enve_mant_p, method = "bonferroni")
enve_mant_p
## [1] 0.267 0.297 0.207
### Biogeographic
# All sites for figure
FDb_dist <- gowdis(scaled_FD_total_env[-c(8,20),c(1:17)])
envba_mant <- mantel(envb_dist, FDb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
envba_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = envb_dist, ydis = FDb_dist, method = "spearman",      permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.08245 
##       Significance: 0.354 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.163 0.191 0.219 0.246 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 999
# Mixed and stratified lakes
FDbms_dist <- gowdis(scaled_FD_total_env[c(1:6,10,12:15,17,21:23),c(1:17)])
envbms_mant <- mantel(envbms_dist, FDbms_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
envbms_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = envbms_dist, ydis = FDbms_dist, method = "spearman",      permutations = 1000, strata = env[c(1:6, 10, 12:15, 17, 21:23),          19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.1734 
##       Significance: 0.32268 
## 
## Upper quantiles of permutations (null model):
##   90%   95% 97.5%   99% 
## 0.332 0.387 0.444 0.498 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Ocean sites and mixed lakes
FDbom_dist <- gowdis(scaled_FD_total_env[c(3,6:7,9:11,13:16,18:19,23),c(1:7)])
envbom_mant <- mantel(envbom_dist, FDbom_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
envbom_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = envbom_dist, ydis = FDbom_dist, method = "spearman",      permutations = 1000, strata = env[c(3, 6:7, 9:11, 13:16,          18:19, 23), 19], na.rm = TRUE) 
## 
## Mantel statistic r: 0.06714 
##       Significance: 0.11788 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0769 0.1250 0.1734 0.2060 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Stratified lakes and ocean sites
FDbso_dist <- gowdis(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(1:17)])
envbso_mant <- mantel(envbso_dist, FDbso_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
envbso_mant
## 
## Mantel statistic based on Spearman's rank correlation rho 
## 
## Call:
## mantel(xdis = envbso_dist, ydis = FDbso_dist, method = "spearman",      permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12,          16:19, 21:22), 19], na.rm = TRUE) 
## 
## Mantel statistic r: -0.05808 
##       Significance: 0.31369 
## 
## Upper quantiles of permutations (null model):
##    90%    95%  97.5%    99% 
## 0.0116 0.0456 0.0607 0.0794 
## Blocks:  strata 
## Permutation: free
## Number of permutations: 1000
# Adjusted p-values
envb_mant_p <- rbind(envbms_mant$signif, envbom_mant$signif, envbso_mant$signif)
envb_mant_p <- envb_mant_p[,1]
envb_mant_p <- p.adjust(envb_mant_p, method = "bonferroni")
envb_mant_p
## [1] 0.9680320 0.3536464 0.9410589

Plot environmental/biogeographical NMDS and envfit results

Includes a plot of correlated trait variables

enve_NMDS_data.scores <- as.data.frame(scores(enve_NMDS))
enve_NMDS_data.scores$Stratification <- env[-c(9,16,18,20),19]
enve_NMDS_data.scores$Lakes <- env[-c(9,16,18,20),1]
enve_NMDS_data.scores$Stratification <- factor(enve_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))

# enve_ef_coord_cont <- as.data.frame(scores(enve_ef, "vectors")) * ordiArrowMul(enve_ef)
# enve_ef_coord_cat = as.data.frame(scores(enve_ef, "factors")) * ordiArrowMul(enve_ef)

enve_ef_plot <- ggplot(data = enve_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
  geom_point(data = enve_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) + 
  geom_text_repel(data = enve_NMDS_data.scores, label = enve_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
  #              data = enve_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD3333") +
  # geom_text(data = enve_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
  #           color = "#CD3333", label = row.names(enve_ef_coord_cont), size = 7) + 
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
  #              data = enve_ef_coord_cat, linewidth =1, alpha = 0.2, color = "#8B6508") +
  # geom_text(data = enve_ef_coord_cat, aes(x = NMDS1, y = NMDS2), 
  #           color = "#8B6508", label = row.names(enve_ef_coord_cat), size = 7, check_overlap = T) + 
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = 1.35, y = 1.55, size = 6, 
  #          label = paste("Stress: ", round(enve_NMDS$stress, digits = 2))) +
  labs(color = "Stratification", tag = "A")
enve_ef_plot <- enve_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
enve_ef_plot
## Too few points to calculate an ellipse
## Warning: Removed 1 row containing missing values (`geom_path()`).

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/enve_ef_plot.png", enve_ef_plot, width = 8, height = 4, units = "in")
## Too few points to calculate an ellipse
## Warning: Removed 1 row containing missing values (`geom_path()`).
## Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
envb_NMDS_data.scores <- as.data.frame(scores(envb_NMDS))
envb_NMDS_data.scores$Stratification <- env[-c(8,20),19]
envb_NMDS_data.scores$Lakes <- env[-c(8,20),1]
envb_NMDS_data.scores$Stratification <- factor(envb_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))

# envb_ef_coord_cont <- as.data.frame(scores(envb_ef, "vectors")) * ordiArrowMul(envb_ef)
# envb_ef_coord_cat = as.data.frame(scores(envb_ef, "factors")) * ordiArrowMul(envb_ef)

envb_ef_plot <- ggplot(data = envb_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) + 
  stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
  geom_point(data = envb_NMDS_data.scores, aes(color = Stratification), size = 3, alpha = 1) + 
  geom_text_repel(data = envb_NMDS_data.scores, label = envb_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
  scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
  #              data = envb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD3333") +
  # geom_text(data = envb_ef_coord_cont, aes(x = NMDS1, y = NMDS2), 
  #           color = "#CD3333", label = row.names(envb_ef_coord_cont), size = 7) + 
  # geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2), 
  #              data = envb_ef_coord_cat, linewidth =1, alpha = 0.2, color = "#8B6508") +
  # geom_text(data = envb_ef_coord_cat, aes(x = NMDS1, y = NMDS2), 
  #           color = "#8B6508", label = row.names(envb_ef_coord_cat), size = 7, check_overlap = T) + 
  theme(text = element_text(size = 22), legend.text = element_text(size = 22),
        panel.background = element_blank(), panel.border = element_rect(fill = NA), 
        axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
  # annotate(geom = "label", x = 5.9, y = 1.59, size = 6, 
  #          label = paste("Stress: ", round(envb_NMDS$stress, digits = 2))) +
  labs(color = "Stratification", tag = "B")
envb_ef_plot <- envb_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
envb_ef_plot

ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/envb_ef_plot.png", envb_ef_plot, width = 8, height = 4, units = "in")
sessionInfo()
## R version 4.3.1 (2023-06-16)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.4.1
## 
## Matrix products: default
## BLAS:   /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib 
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.11.0
## 
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
## 
## time zone: America/Los_Angeles
## tzcode source: internal
## 
## attached base packages:
## [1] parallel  stats     graphics  grDevices utils     datasets  methods  
## [8] base     
## 
## other attached packages:
##  [1] adespatial_0.3-23    picante_1.8.2        nlme_3.1-164        
##  [4] pairwiseAdonis_0.4.1 cluster_2.1.6        FD_1.0-12.3         
##  [7] geometry_0.4.7       ade4_1.7-22          vegan_2.6-4         
## [10] lattice_0.22-5       permute_0.9-7        ggrepel_0.9.4       
## [13] viridis_0.6.4        viridisLite_0.4.2    ggplot2_3.4.4       
## [16] tidyr_1.3.0          phytools_2.0-3       maps_3.4.1.1        
## [19] ape_5.7-1            reshape2_1.4.4       stringr_1.5.1       
## [22] dplyr_1.1.4          knitr_1.45          
## 
## loaded via a namespace (and not attached):
##   [1] RColorBrewer_1.1-3      wk_0.9.1                rstudioapi_0.15.0      
##   [4] jsonlite_1.8.8          magrittr_2.0.3          farver_2.1.1           
##   [7] rmarkdown_2.25          adegraphics_1.0-21      ragg_1.2.6             
##  [10] vctrs_0.6.5             spdep_1.3-1             htmltools_0.5.7        
##  [13] progress_1.2.3          s2_1.1.5                adegenet_2.1.10        
##  [16] sass_0.4.8              spData_2.3.0            KernSmooth_2.23-22     
##  [19] bslib_0.6.1             adephylo_1.1-16         plyr_1.8.9             
##  [22] cachem_1.0.8            uuid_1.1-1              igraph_1.5.1           
##  [25] mime_0.12               lifecycle_1.0.4         iterators_1.0.14       
##  [28] pkgconfig_2.0.3         Matrix_1.6-4            R6_2.5.1               
##  [31] fastmap_1.1.1           shiny_1.8.0             magic_1.6-1            
##  [34] digest_0.6.33           numDeriv_2016.8-1.1     colorspace_2.1-0       
##  [37] phylobase_0.8.10        textshaping_0.3.7       labeling_0.4.3         
##  [40] clusterGeneration_1.3.8 fansi_1.0.6             httr_1.4.7             
##  [43] abind_1.4-5             mgcv_1.9-0              compiler_4.3.1         
##  [46] proxy_0.4-27            withr_2.5.2             doParallel_1.0.17      
##  [49] optimParallel_1.0-2     DBI_1.1.3               highr_0.10             
##  [52] MASS_7.3-60             classInt_0.4-10         scatterplot3d_0.3-44   
##  [55] tools_4.3.1             units_0.8-5             rncl_0.8.7             
##  [58] httpuv_1.6.13           glue_1.6.2              quadprog_1.5-8         
##  [61] promises_1.2.1          grid_4.3.1              sf_1.0-14              
##  [64] generics_0.1.3          seqinr_4.2-36           gtable_0.3.4           
##  [67] class_7.3-22            hms_1.1.3               sp_2.1-2               
##  [70] xml2_1.3.6              utf8_1.2.4              foreach_1.5.2          
##  [73] pillar_1.9.0            later_1.3.2             splines_4.3.1          
##  [76] deldir_2.0-2            tidyselect_1.2.0        gridExtra_2.3          
##  [79] xfun_0.41               expm_0.999-8            stringi_1.8.2          
##  [82] boot_1.3-28.1           yaml_2.3.7              evaluate_0.23          
##  [85] codetools_0.2-19        interp_1.1-5            tibble_3.2.1           
##  [88] cli_3.6.1               xtable_1.8-4            systemfonts_1.0.5      
##  [91] munsell_0.5.0           jquerylib_0.1.4         Rcpp_1.0.11            
##  [94] coda_0.19-4             png_0.1-8               XML_3.99-0.16          
##  [97] ellipsis_0.3.2          RNeXML_2.4.11           prettyunits_1.2.0      
## [100] latticeExtra_0.6-30     jpeg_0.1-10             phangorn_2.11.1        
## [103] scales_1.3.0            e1071_1.7-14            purrr_1.0.2            
## [106] crayon_1.5.2            combinat_0.0-8          rlang_1.1.2            
## [109] fastmatch_1.1-4         mnormt_2.1.1

Extra unused code

lakes <- traits_sesmpd_env[,1]
#traits_sesmpd_env$obs.z <- traits_sesmpd_env$mpd.obs.z
t_mpd.obs.z <- traits_sesmpd_env[,7]

#traits_sesmntd_env$obs.z <- traits_sesmntd_env$mntd.obs.z
t_mntd.obs.z <- traits_sesmntd_env[,7]

#traits_sespd_env$obs.z <- traits_sespd_env$pd.obs.z
t_pd.obs.z <- traits_sespd_env[,7]

#phylo_sesmpd_env$obs.z <- phylo_sesmpd_env$mpd.obs.z
p_mpd.obs.z <- phylo_sesmpd_env[,7]

#phylo_sesmntd_env$obs.z <- phylo_sesmntd_env$mntd.obs.z
p_mntd.obs.z <- phylo_sesmntd_env[,7]

#phylo_sespd_env$obs.z <- phylo_sespd_env$pd.obs.z
p_pd.obs.z <- phylo_sespd_env[,7]

p_sespd_env <- phylo_sespd_env[,c(10:40)]

tp_z_env <- cbind(lakes, t_mpd.obs.z, t_mntd.obs.z, t_pd.obs.z, p_mpd.obs.z, p_mntd.obs.z, p_pd.obs.z, p_sespd_env)
row.names(tp_z_env) <- tp_z_env$lakes


lakes_sub <- straits_sesmpd_env[,1]
#straits_sesmpd_env$obs.z <- straits_sesmpd_env$mpd.obs.z
tsub_mpd.obs.z <- straits_sesmpd_env[,7]

#straits_sesmntd_env$obs.z <- straits_sesmntd_env$mntd.obs.z
tsub_mntd.obs.z <- straits_sesmntd_env[,7]

#straits_sespd_env$obs.z <- straits_sespd_env$pd.obs.z
tsub_pd.obs.z <- straits_sespd_env[,7]

#sphylo_sesmpd_env$obs.z <- sphylo_sesmpd_env$mpd.obs.z
psub_mpd.obs.z <- sphylo_sesmpd_env[,7]

#sphylo_sesmntd_env$obs.z <- sphylo_sesmntd_env$mntd.obs.z
psub_mntd.obs.z <- sphylo_sesmntd_env[,7]

#sphylo_sespd_env$obs.z <- sphylo_sespd_env$pd.obs.z
psub_pd.obs.z <- sphylo_sespd_env[,7]

psub_sespd_env <- sphylo_sespd_env[,c(10:40)]

stp_z_env <- cbind(lakes_sub, tsub_mpd.obs.z, tsub_mntd.obs.z, tsub_pd.obs.z, psub_mpd.obs.z, psub_mntd.obs.z, psub_pd.obs.z, psub_sespd_env)
row.names(stp_z_env) <- stp_z_env$lakes_sub

t_z_dist <- vegdist(tp_z_env[,c(2:4)], method = "euclidean")
p_z_dist <- vegdist(tp_z_env[,c(5:7)], method = "euclidean")

st_z_dist <- vegdist(stp_z_env[,c(2:4)], method = "euclidean")
sp_z_dist <- vegdist(stp_z_env[,c(5:7)], method = "euclidean")

groups <- env[,19]
t_z_bd <- betadisper(t_z_dist, groups)
anova(t_z_bd)
permutest(t_z_bd, pairwise = TRUE)
(t_z_bd.HSD <- TukeyHSD(t_z_bd))
boxplot(t_z_bd)

groups <- env[-c(20),19]
st_z_bd <- betadisper(st_z_dist, groups)
anova(st_z_bd)
permutest(st_z_bd, pairwise = TRUE)
(st_z_bd.HSD <- TukeyHSD(st_z_bd))
boxplot(st_z_bd)