Stratification NMDS envfit analyses
Bailey Carlson
R Markdown
Load stratification NMDS envfit analyses packages
# Load the knitr package if not already loaded
library(knitr)
# Source the R Markdown files
knit("/Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.Rmd", output = "/Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.md")##
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## processing file: /Users/bailey/Documents/research/fish_biodiversity/src/collection/load_collection_data.Rmd##
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# install_github("pmartinezarbizu/pairwiseAdonis/pairwiseAdonis")
#Analyses
library(vegan)
library(pairwiseAdonis)## Loading required package: cluster##
## Attaching package: 'cluster'## The following object is masked from 'package:maps':
##
## votes.republibrary(picante)## Loading required package: nlme##
## Attaching package: 'nlme'## The following object is masked from 'package:dplyr':
##
## collapselibrary(ade4)
library(adespatial)## Registered S3 methods overwritten by 'adegraphics':
## method from
## biplot.dudi ade4
## kplot.foucart ade4
## kplot.mcoa ade4
## kplot.mfa ade4
## kplot.pta ade4
## kplot.sepan ade4
## kplot.statis ade4
## scatter.coa ade4
## scatter.dudi ade4
## scatter.nipals ade4
## scatter.pco ade4
## score.acm ade4
## score.mix ade4
## score.pca ade4
## screeplot.dudi ade4## Registered S3 method overwritten by 'spdep':
## method from
## plot.mst ape## Registered S3 methods overwritten by 'adespatial':
## method from
## plot.multispati adegraphics
## print.multispati ade4
## summary.multispati ade4##
## Attaching package: 'adespatial'## The following object is masked from 'package:ade4':
##
## multispati#Graphing
library(ggplot2)
library(viridis)
library(ggrepel)Load stratification NMDS envfit analyses functions
Need to run this function for downstream analyses in this Markdown file
# Function p.adjust.envfit
# Calculates adjusted P values for results stored in envfit object,
# created using envfit function from vegan, which fits supplementary variables
# onto axes of unconstrained ordination.
# Arguments:
# x - envfit object
# method - method for correction of multiple testing issue (default = 'bonferroni',
# see ''?p.adjust' for more options)
# n - optional, number of tests for which to correct; if not given, the number is
# taken as the number of tests conducted by envfit function (for both vectors and factors).
# Author: David Zeleny
p.adjust.envfit <- function (x, method = 'bonferroni', n)
{
x.new <- x
if (!is.null (x$vectors)) pval.vectors <- x$vectors$pvals else pval.vectors <- NULL
if (!is.null (x$factors)) pval.factors <- x$factors$pvals else pval.factors <- NULL
if (missing (n)) n <- length (pval.vectors) + length (pval.factors)
if (!is.null (x$vectors)) x.new$vectors$pvals <- p.adjust (x$vectors$pvals, method = method, n = n)
if (!is.null (x$factors)) x.new$factors$pvals <- p.adjust (x$factors$pvals, method = method, n = n)
cat ('Adjustment of significance by', method, 'method')
return (x.new)
}Incidence dissimilarity distances
# 1.BCM (S), 2.CLM (S), 3.FLK (M), 4.GLK (S), 5.HLM (S), 6.HLO (M), 7.IBK (O), 8.LLN (M), 9.LLNC (O), 10.MLN (M), 11.NCN (O), 12.NLK (S), 13.NLN (M), 14.NLU (M), 15.OLO (M), 16.OLOO (O), 17.OTM (S), 18.OTMO (O), 19.RCA (O), 20.REF (R), 21.SLN (S), 22.TLN (S), 23.ULN (M), 24.Ocean sites, 25.Mixed lakes, 26.Stratified lakes
### Regular
## Jaccard
# All sites
jpres_dist <- vegdist(presabs_lake[-c(20,24:26),], method = "jaccard", binary = TRUE)
# Mixed and stratified lakes
jpresms_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "jaccard", binary = TRUE)
# Ocean sites and mixed lakes
jpresom_dist <- vegdist(presabs_lake[c(3,6:11,13:16,18:19,23),], method = "jaccard", binary = TRUE)
# Stratified lakes and ocean sites
jpresso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "jaccard", binary = TRUE)
# Stratified lakes
jpress_dist <- vegdist(presabs_lake[c(1:2,4,5,12,17,21:22),], method = "jaccard", binary = TRUE)
## Dice-Sørensen
# All sites
spres_dist <- vegdist(presabs_lake[-c(20,24:26),], method = "bray", binary = TRUE)
# Mixed and stratified lakes
spresms_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "bray", binary = TRUE)
# Ocean sites and mixed lakes
spresom_dist <- vegdist(presabs_lake[c(3,6:11,13:16,18:19,23),], method = "bray", binary = TRUE)
# Stratified lakes and ocean sites
spresso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "bray", binary = TRUE)
### Environmental -c(9,16,18,20)
## Jaccard
# All sites
jprese_dist <- vegdist(presabs_lake[-c(9,16,18,20,24:26),], method = "jaccard", binary = TRUE)
# Mixed and stratified lakes
jpresems_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "jaccard", binary = TRUE)
# Ocean sites and mixed lakes
jpreseom_dist <- vegdist(presabs_lake[c(3,6:8,10:11,13:15,19,23),], method = "jaccard", binary = TRUE)
# Stratified lakes and ocean sites
jpreseso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,11:12,17,19,21:22),], method = "jaccard", binary = TRUE)
## Dice-Sørensen
# All sites
sprese_dist <- vegdist(presabs_lake[-c(9,16,18,20,24:26),], method = "bray", binary = TRUE)
# Mixed and stratified lakes
spresems_dist <- vegdist(presabs_lake[c(1:6,8,10,12:15,17,21:23),], method = "bray", binary = TRUE)
# Ocean sites and mixed lakes
spreseom_dist <- vegdist(presabs_lake[c(3,6:8,10:11,13:15,19,23),], method = "bray", binary = TRUE)
# Stratified lakes and ocean sites
spreseso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,11:12,17,19,21:22),], method = "bray", binary = TRUE)
### Biogeographic -c(8,20)
## Jaccard
# All sites
jpresb_dist <- vegdist(presabs_lake[-c(8,20,24:26),], method = "jaccard", binary = TRUE)
# Mixed and stratified lakes
jpresbms_dist <- vegdist(presabs_lake[c(1:6,10,12:15,17,21:23),], method = "jaccard", binary = TRUE)
# Ocean sites and mixed lakes
jpresbom_dist <- vegdist(presabs_lake[c(3,6:7,9:11,13:16,18:19,23),], method = "jaccard", binary = TRUE)
# Stratified lakes and ocean sites
jpresbso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "jaccard", binary = TRUE)
## Dice-Sørensen
# All sites
spresb_dist <- vegdist(presabs_lake[-c(8,20,24:26),], method = "bray", binary = TRUE)
# Mixed and stratified lakes
spresbms_dist <- vegdist(presabs_lake[c(1:6,10,12:15,17,21:23),], method = "bray", binary = TRUE)
# Ocean sites and mixed lakes
spresbom_dist <- vegdist(presabs_lake[c(3,6:7,9:11,13:16,18:19,23),], method = "bray", binary = TRUE)
# Stratified lakes and ocean sites
spresbso_dist <- vegdist(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], method = "bray", binary = TRUE)Incidence NMDS
To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.
### Regular
## Jaccard
# All sites
jpres_NMDS <- metaMDS(jpres_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.09056778
## Run 1 stress 0.1081235
## Run 2 stress 0.0898531
## ... New best solution
## ... Procrustes: rmse 0.02579958 max resid 0.08091755
## Run 3 stress 0.1049304
## Run 4 stress 0.1055025
## Run 5 stress 0.09172738
## Run 6 stress 0.1044942
## Run 7 stress 0.1065492
## Run 8 stress 0.09196771
## Run 9 stress 0.09030384
## ... Procrustes: rmse 0.01541363 max resid 0.04708793
## Run 10 stress 0.1055026
## Run 11 stress 0.09172721
## Run 12 stress 0.09056777
## Run 13 stress 0.09186388
## Run 14 stress 0.09038436
## Run 15 stress 0.1064196
## Run 16 stress 0.09194912
## Run 17 stress 0.1060172
## Run 18 stress 0.1083909
## Run 19 stress 0.09145366
## Run 20 stress 0.0911877
## Run 21 stress 0.1066895
## Run 22 stress 0.1043691
## Run 23 stress 0.09056095
## Run 24 stress 0.09056094
## Run 25 stress 0.09049502
## Run 26 stress 0.08976357
## ... New best solution
## ... Procrustes: rmse 0.008064314 max resid 0.02709489
## Run 27 stress 0.09030395
## Run 28 stress 0.090495
## Run 29 stress 0.09059968
## Run 30 stress 0.09599495
## Run 31 stress 0.1044939
## Run 32 stress 0.09194928
## Run 33 stress 0.1071633
## Run 34 stress 0.107042
## Run 35 stress 0.09056104
## Run 36 stress 0.1099845
## Run 37 stress 0.09038457
## Run 38 stress 0.09196521
## Run 39 stress 0.09109515
## Run 40 stress 0.104369
## Run 41 stress 0.1043694
## Run 42 stress 0.1049917
## Run 43 stress 0.1074567
## Run 44 stress 0.09172719
## Run 45 stress 0.09248343
## Run 46 stress 0.1049917
## Run 47 stress 0.1068171
## Run 48 stress 0.09042047
## Run 49 stress 0.09248342
## Run 50 stress 0.09015808
## ... Procrustes: rmse 0.01479886 max resid 0.04508014
## Run 51 stress 0.09109528
## Run 52 stress 0.09118757
## Run 53 stress 0.1055029
## Run 54 stress 0.1055384
## Run 55 stress 0.09056105
## Run 56 stress 0.09090439
## Run 57 stress 0.09049525
## Run 58 stress 0.09056117
## Run 59 stress 0.09145362
## Run 60 stress 0.1044938
## Run 61 stress 0.1081226
## Run 62 stress 0.0904205
## Run 63 stress 0.09059969
## Run 64 stress 0.104992
## Run 65 stress 0.09049512
## Run 66 stress 0.1074571
## Run 67 stress 0.1049294
## Run 68 stress 0.09056777
## Run 69 stress 0.1070394
## Run 70 stress 0.1082082
## Run 71 stress 0.08985331
## ... Procrustes: rmse 0.008045202 max resid 0.02682587
## Run 72 stress 0.1055388
## Run 73 stress 0.09056779
## Run 74 stress 0.09059981
## Run 75 stress 0.1076414
## Run 76 stress 0.1081637
## Run 77 stress 0.1070393
## Run 78 stress 0.09056116
## Run 79 stress 0.09194912
## Run 80 stress 0.09248341
## Run 81 stress 0.09599514
## Run 82 stress 0.09056101
## Run 83 stress 0.0903843
## Run 84 stress 0.104369
## Run 85 stress 0.09042048
## Run 86 stress 0.1043691
## Run 87 stress 0.09066137
## Run 88 stress 0.1066899
## Run 89 stress 0.09089979
## Run 90 stress 0.1077497
## Run 91 stress 0.09056094
## Run 92 stress 0.09056103
## Run 93 stress 0.09059968
## Run 94 stress 0.10669
## Run 95 stress 0.1074489
## Run 96 stress 0.09056102
## Run 97 stress 0.09049523
## Run 98 stress 0.1092545
## Run 99 stress 0.1059893
## Run 100 stress 0.09145368
## Run 101 stress 0.0905611
## Run 102 stress 0.09059981
## Run 103 stress 0.1049299
## Run 104 stress 0.09545582
## Run 105 stress 0.1049299
## Run 106 stress 0.09042046
## Run 107 stress 0.1049923
## Run 108 stress 0.08976357
## ... New best solution
## ... Procrustes: rmse 6.237325e-05 max resid 0.0001038647
## ... Similar to previous best
## Run 109 stress 0.09056111
## Run 110 stress 0.0924834
## Run 111 stress 0.1055386
## Run 112 stress 0.1083693
## Run 113 stress 0.09022718
## ... Procrustes: rmse 0.01098145 max resid 0.04091155
## Run 114 stress 0.1077492
## Run 115 stress 0.09056103
## Run 116 stress 0.1049294
## Run 117 stress 0.09145362
## Run 118 stress 0.09189851
## Run 119 stress 0.09109518
## Run 120 stress 0.09056097
## Run 121 stress 0.09545607
## Run 122 stress 0.0903843
## Run 123 stress 0.1081243
## Run 124 stress 0.09545591
## Run 125 stress 0.09049512
## Run 126 stress 0.1049302
## Run 127 stress 0.0914537
## Run 128 stress 0.09194941
## Run 129 stress 0.09109525
## Run 130 stress 0.09030382
## Run 131 stress 0.1081643
## Run 132 stress 0.1066895
## Run 133 stress 0.09056094
## Run 134 stress 0.1070394
## Run 135 stress 0.09145369
## Run 136 stress 0.1066892
## Run 137 stress 0.090304
## Run 138 stress 0.09088793
## Run 139 stress 0.09145371
## Run 140 stress 0.09056099
## Run 141 stress 0.1049918
## Run 142 stress 0.108124
## Run 143 stress 0.1068174
## Run 144 stress 0.09172717
## Run 145 stress 0.09042049
## Run 146 stress 0.1068171
## Run 147 stress 0.1055026
## Run 148 stress 0.0906214
## Run 149 stress 0.1066894
## Run 150 stress 0.1076417
## Run 151 stress 0.1083688
## Run 152 stress 0.09172719
## Run 153 stress 0.1051249
## Run 154 stress 0.09089985
## Run 155 stress 0.09317788
## Run 156 stress 0.09545614
## Run 157 stress 0.09062136
## Run 158 stress 0.0898531
## ... Procrustes: rmse 0.008062615 max resid 0.02726822
## Run 159 stress 0.1076741
## Run 160 stress 0.1043691
## Run 161 stress 0.09015806
## ... Procrustes: rmse 0.01478303 max resid 0.04501115
## Run 162 stress 0.1049921
## Run 163 stress 0.0973576
## Run 164 stress 0.0919493
## Run 165 stress 0.09056105
## Run 166 stress 0.1049301
## Run 167 stress 0.1070394
## Run 168 stress 0.08985313
## ... Procrustes: rmse 0.008062342 max resid 0.02723384
## Run 169 stress 0.107457
## Run 170 stress 0.09545617
## Run 171 stress 0.09109524
## Run 172 stress 0.09090433
## Run 173 stress 0.09038451
## Run 174 stress 0.1059895
## Run 175 stress 0.09248346
## Run 176 stress 0.1096485
## Run 177 stress 0.09066138
## Run 178 stress 0.08976356
## ... New best solution
## ... Procrustes: rmse 3.31987e-05 max resid 6.141394e-05
## ... Similar to previous best
## Run 179 stress 0.09056094
## Run 180 stress 0.1049307
## Run 181 stress 0.0904952
## Run 182 stress 0.09634398
## Run 183 stress 0.09056104
## Run 184 stress 0.1070623
## Run 185 stress 0.09038449
## Run 186 stress 0.1083944
## Run 187 stress 0.09073176
## Run 188 stress 0.09049518
## Run 189 stress 0.09022711
## ... Procrustes: rmse 0.01097073 max resid 0.04085012
## Run 190 stress 0.09049531
## Run 191 stress 0.1076744
## Run 192 stress 0.09015806
## ... Procrustes: rmse 0.01476881 max resid 0.04496002
## Run 193 stress 0.09015815
## ... Procrustes: rmse 0.01482088 max resid 0.04516027
## Run 194 stress 0.09042047
## Run 195 stress 0.09186409
## Run 196 stress 0.09070657
## Run 197 stress 0.09056098
## Run 198 stress 0.09049514
## Run 199 stress 0.1081638
## Run 200 stress 0.09015808
## ... Procrustes: rmse 0.0147501 max resid 0.04489627
## Run 201 stress 0.09056095
## Run 202 stress 0.09073434
## Run 203 stress 0.1055381
## Run 204 stress 0.09090003
## Run 205 stress 0.09059972
## Run 206 stress 0.09145371
## Run 207 stress 0.1049917
## Run 208 stress 0.1049921
## Run 209 stress 0.1070352
## Run 210 stress 0.09653402
## Run 211 stress 0.0903844
## Run 212 stress 0.09089981
## Run 213 stress 0.1062431
## Run 214 stress 0.09599489
## Run 215 stress 0.09088794
## Run 216 stress 0.1068746
## Run 217 stress 0.0905611
## Run 218 stress 0.1066895
## Run 219 stress 0.09056093
## Run 220 stress 0.09090003
## Run 221 stress 0.09042047
## Run 222 stress 0.1074491
## Run 223 stress 0.09090013
## Run 224 stress 0.09015806
## ... Procrustes: rmse 0.01476321 max resid 0.04493289
## Run 225 stress 0.1049304
## Run 226 stress 0.1074489
## Run 227 stress 0.09042046
## Run 228 stress 0.09042046
## Run 229 stress 0.1060166
## Run 230 stress 0.1060173
## Run 231 stress 0.09049524
## Run 232 stress 0.09056101
## Run 233 stress 0.09056101
## Run 234 stress 0.09049506
## Run 235 stress 0.0897636
## ... Procrustes: rmse 7.475144e-05 max resid 0.0001329916
## ... Similar to previous best
## Run 236 stress 0.09189855
## Run 237 stress 0.09066144
## Run 238 stress 0.09049524
## Run 239 stress 0.09056099
## Run 240 stress 0.09248341
## Run 241 stress 0.1060311
## Run 242 stress 0.1060309
## Run 243 stress 0.09194913
## Run 244 stress 0.1049302
## Run 245 stress 0.09172717
## Run 246 stress 0.09109515
## Run 247 stress 0.1043691
## Run 248 stress 0.09599484
## Run 249 stress 0.09194931
## Run 250 stress 0.1068172
## Run 251 stress 0.09145365
## Run 252 stress 0.09145371
## Run 253 stress 0.095995
## Run 254 stress 0.09042045
## Run 255 stress 0.09172721
## Run 256 stress 0.09145371
## Run 257 stress 0.10775
## Run 258 stress 0.09059971
## Run 259 stress 0.09056108
## Run 260 stress 0.09030395
## Run 261 stress 0.1092534
## Run 262 stress 0.09545615
## Run 263 stress 0.09599504
## Run 264 stress 0.08985312
## ... Procrustes: rmse 0.00805622 max resid 0.02710463
## Run 265 stress 0.1074189
## Run 266 stress 0.09545613
## Run 267 stress 0.1070396
## Run 268 stress 0.1049918
## Run 269 stress 0.09049503
## Run 270 stress 0.09545611
## Run 271 stress 0.1066897
## Run 272 stress 0.1083587
## Run 273 stress 0.09089998
## Run 274 stress 0.1043691
## Run 275 stress 0.09073151
## Run 276 stress 0.09015816
## ... Procrustes: rmse 0.01482149 max resid 0.0451629
## Run 277 stress 0.0898531
## ... Procrustes: rmse 0.00806382 max resid 0.02721912
## Run 278 stress 0.1070416
## Run 279 stress 0.09074067
## Run 280 stress 0.1055382
## Run 281 stress 0.09022718
## ... Procrustes: rmse 0.01099377 max resid 0.04093418
## Run 282 stress 0.09062135
## Run 283 stress 0.0918985
## Run 284 stress 0.09070634
## Run 285 stress 0.1092556
## Run 286 stress 0.1059779
## Run 287 stress 0.09653392
## Run 288 stress 0.09545588
## Run 289 stress 0.0914537
## Run 290 stress 0.09090429
## Run 291 stress 0.1055024
## Run 292 stress 0.1059889
## Run 293 stress 0.1070418
## Run 294 stress 0.09073451
## Run 295 stress 0.09042052
## Run 296 stress 0.106582
## Run 297 stress 0.09042059
## Run 298 stress 0.109254
## Run 299 stress 0.0905998
## Run 300 stress 0.1109317
## Run 301 stress 0.108359
## Run 302 stress 0.09248344
## Run 303 stress 0.1083694
## Run 304 stress 0.09186389
## Run 305 stress 0.09145377
## Run 306 stress 0.08976357
## ... Procrustes: rmse 3.941619e-05 max resid 8.18115e-05
## ... Similar to previous best
## Run 307 stress 0.09172717
## Run 308 stress 0.0973577
## Run 309 stress 0.1066895
## Run 310 stress 0.09602705
## Run 311 stress 0.09145364
## Run 312 stress 0.1074568
## Run 313 stress 0.1076304
## Run 314 stress 0.1070394
## Run 315 stress 0.09317808
## Run 316 stress 0.09042049
## Run 317 stress 0.0908879
## Run 318 stress 0.1076419
## Run 319 stress 0.105125
## Run 320 stress 0.0905997
## Run 321 stress 0.09042052
## Run 322 stress 0.08976357
## ... Procrustes: rmse 2.997311e-05 max resid 5.573333e-05
## ... Similar to previous best
## Run 323 stress 0.09172721
## Run 324 stress 0.08976356
## ... Procrustes: rmse 8.230835e-06 max resid 2.248459e-05
## ... Similar to previous best
## Run 325 stress 0.0902275
## ... Procrustes: rmse 0.01106126 max resid 0.0410805
## Run 326 stress 0.09074071
## Run 327 stress 0.09015816
## ... Procrustes: rmse 0.01482267 max resid 0.04516829
## Run 328 stress 0.107062
## Run 329 stress 0.09049502
## Run 330 stress 0.0905997
## Run 331 stress 0.0904951
## Run 332 stress 0.09172736
## Run 333 stress 0.09545634
## Run 334 stress 0.09073145
## Run 335 stress 0.0907315
## Run 336 stress 0.1096494
## Run 337 stress 0.09042048
## Run 338 stress 0.09030403
## Run 339 stress 0.09056108
## Run 340 stress 0.1099842
## Run 341 stress 0.1068176
## Run 342 stress 0.09056096
## Run 343 stress 0.09599516
## Run 344 stress 0.09049499
## Run 345 stress 0.09248354
## Run 346 stress 0.09073441
## Run 347 stress 0.09545591
## Run 348 stress 0.1049919
## Run 349 stress 0.1060182
## Run 350 stress 0.09074065
## Run 351 stress 0.09634423
## Run 352 stress 0.09066145
## Run 353 stress 0.106689
## Run 354 stress 0.09145378
## Run 355 stress 0.09189849
## Run 356 stress 0.09172717
## Run 357 stress 0.09056779
## Run 358 stress 0.08976356
## ... New best solution
## ... Procrustes: rmse 4.519641e-06 max resid 1.084228e-05
## ... Similar to previous best
## Run 359 stress 0.09030384
## Run 360 stress 0.09090425
## Run 361 stress 0.09545626
## Run 362 stress 0.1070394
## Run 363 stress 0.09022712
## ... Procrustes: rmse 0.01096886 max resid 0.04086289
## Run 364 stress 0.09194912
## Run 365 stress 0.1099317
## Run 366 stress 0.0904206
## Run 367 stress 0.09186395
## Run 368 stress 0.09015809
## ... Procrustes: rmse 0.01475644 max resid 0.04490092
## Run 369 stress 0.09073147
## Run 370 stress 0.09042056
## Run 371 stress 0.1065492
## Run 372 stress 0.09090427
## Run 373 stress 0.1102737
## Run 374 stress 0.09042049
## Run 375 stress 0.106875
## Run 376 stress 0.09056097
## Run 377 stress 0.108123
## Run 378 stress 0.1060176
## Run 379 stress 0.0898531
## ... Procrustes: rmse 0.008061612 max resid 0.02722196
## Run 380 stress 0.09049509
## Run 381 stress 0.09172717
## Run 382 stress 0.09317764
## Run 383 stress 0.1055382
## Run 384 stress 0.1077493
## Run 385 stress 0.09022738
## ... Procrustes: rmse 0.01101362 max resid 0.041048
## Run 386 stress 0.09653368
## Run 387 stress 0.1070393
## Run 388 stress 0.1059771
## Run 389 stress 0.09194921
## Run 390 stress 0.09056095
## Run 391 stress 0.09735773
## Run 392 stress 0.09109516
## Run 393 stress 0.08976356
## ... Procrustes: rmse 1.411291e-05 max resid 3.729001e-05
## ... Similar to previous best
## Run 394 stress 0.107062
## Run 395 stress 0.09145363
## Run 396 stress 0.09145365
## Run 397 stress 0.09194921
## Run 398 stress 0.1070393
## Run 399 stress 0.09109515
## Run 400 stress 0.09056103
## Run 401 stress 0.09189847
## Run 402 stress 0.09735763
## Run 403 stress 0.09038429
## Run 404 stress 0.09049499
## Run 405 stress 0.09196773
## Run 406 stress 0.09545647
## Run 407 stress 0.09229306
## Run 408 stress 0.09545583
## Run 409 stress 0.0909043
## Run 410 stress 0.09088784
## Run 411 stress 0.09059967
## Run 412 stress 0.09049508
## Run 413 stress 0.1066895
## Run 414 stress 0.1077496
## Run 415 stress 0.1043691
## Run 416 stress 0.090561
## Run 417 stress 0.09118759
## Run 418 stress 0.1055385
## Run 419 stress 0.0914538
## Run 420 stress 0.0903846
## Run 421 stress 0.09056779
## Run 422 stress 0.09056099
## Run 423 stress 0.1043693
## Run 424 stress 0.09545628
## Run 425 stress 0.0904205
## Run 426 stress 0.090561
## Run 427 stress 0.09049519
## Run 428 stress 0.09145366
## Run 429 stress 0.10493
## Run 430 stress 0.09042058
## Run 431 stress 0.09653143
## Run 432 stress 0.09634406
## Run 433 stress 0.1049301
## Run 434 stress 0.09056111
## Run 435 stress 0.09056094
## Run 436 stress 0.09073139
## Run 437 stress 0.09599526
## Run 438 stress 0.1096484
## Run 439 stress 0.09056102
## Run 440 stress 0.09056108
## Run 441 stress 0.09145375
## Run 442 stress 0.09049518
## Run 443 stress 0.1066893
## Run 444 stress 0.09088786
## Run 445 stress 0.090495
## Run 446 stress 0.1071633
## Run 447 stress 0.09545586
## Run 448 stress 0.09145377
## Run 449 stress 0.09090438
## Run 450 stress 0.08976356
## ... Procrustes: rmse 6.035974e-06 max resid 1.068084e-05
## ... Similar to previous best
## Run 451 stress 0.1055384
## Run 452 stress 0.1073026
## Run 453 stress 0.09042047
## Run 454 stress 0.1099694
## Run 455 stress 0.1096357
## Run 456 stress 0.1068748
## Run 457 stress 0.09109515
## Run 458 stress 0.09056102
## Run 459 stress 0.1060175
## Run 460 stress 0.09038437
## Run 461 stress 0.1083696
## Run 462 stress 0.09653149
## Run 463 stress 0.09189854
## Run 464 stress 0.106031
## Run 465 stress 0.1055384
## Run 466 stress 0.09056105
## Run 467 stress 0.09145364
## Run 468 stress 0.1049918
## Run 469 stress 0.09056102
## Run 470 stress 0.1064196
## Run 471 stress 0.09042049
## Run 472 stress 0.09042045
## Run 473 stress 0.09049504
## Run 474 stress 0.0907407
## Run 475 stress 0.1070394
## Run 476 stress 0.09030385
## Run 477 stress 0.106689
## Run 478 stress 0.09056097
## Run 479 stress 0.09015808
## ... Procrustes: rmse 0.01479633 max resid 0.0450676
## Run 480 stress 0.1071633
## Run 481 stress 0.095995
## Run 482 stress 0.1049294
## Run 483 stress 0.1064207
## Run 484 stress 0.1055383
## Run 485 stress 0.107404
## Run 486 stress 0.1074569
## Run 487 stress 0.09022745
## ... Procrustes: rmse 0.01105367 max resid 0.04103884
## Run 488 stress 0.09022712
## ... Procrustes: rmse 0.01097578 max resid 0.04088746
## Run 489 stress 0.1081637
## Run 490 stress 0.090561
## Run 491 stress 0.1059894
## Run 492 stress 0.09056096
## Run 493 stress 0.09056101
## Run 494 stress 0.09038465
## Run 495 stress 0.09056098
## Run 496 stress 0.1096356
## Run 497 stress 0.08976356
## ... Procrustes: rmse 5.143909e-06 max resid 9.484078e-06
## ... Similar to previous best
## Run 498 stress 0.09038464
## Run 499 stress 0.09022716
## ... Procrustes: rmse 0.01097881 max resid 0.04089978
## Run 500 stress 0.1083694
## *** Best solution repeated 4 timesround(jpres_NMDS$stress, digits = 2)## [1] 0.09# Mixed and stratified lakes
jpresms_NMDS <- metaMDS(jpresms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08503614
## Run 1 stress 0.09374192
## Run 2 stress 0.09168928
## Run 3 stress 0.09145334
## Run 4 stress 0.09337257
## Run 5 stress 0.09030413
## Run 6 stress 0.08440261
## ... New best solution
## ... Procrustes: rmse 0.01443206 max resid 0.04303711
## Run 7 stress 0.09374311
## Run 8 stress 0.09030394
## Run 9 stress 0.3312344
## Run 10 stress 0.09030398
## Run 11 stress 0.09145326
## Run 12 stress 0.09321863
## Run 13 stress 0.09407996
## Run 14 stress 0.09030404
## Run 15 stress 0.08773466
## Run 16 stress 0.09407993
## Run 17 stress 0.08973865
## Run 18 stress 0.08440252
## ... New best solution
## ... Procrustes: rmse 0.0001214151 max resid 0.0002204985
## ... Similar to previous best
## Run 19 stress 0.08440255
## ... Procrustes: rmse 0.000206132 max resid 0.0004030233
## ... Similar to previous best
## Run 20 stress 0.09168939
## Run 21 stress 0.08503511
## Run 22 stress 0.08503512
## Run 23 stress 0.09407419
## Run 24 stress 0.09590591
## Run 25 stress 0.09159091
## Run 26 stress 0.09268367
## Run 27 stress 0.09464495
## Run 28 stress 0.1038048
## Run 29 stress 0.09404378
## Run 30 stress 0.09400516
## Run 31 stress 0.09321716
## Run 32 stress 0.09268386
## Run 33 stress 0.08503619
## Run 34 stress 0.09416131
## Run 35 stress 0.09416146
## Run 36 stress 0.09381845
## Run 37 stress 0.0850351
## Run 38 stress 0.08973869
## Run 39 stress 0.09760824
## Run 40 stress 0.09159086
## Run 41 stress 0.0933727
## Run 42 stress 0.09416131
## Run 43 stress 0.09286083
## Run 44 stress 0.09760832
## Run 45 stress 0.09030397
## Run 46 stress 0.09416141
## Run 47 stress 0.09590871
## Run 48 stress 0.09374363
## Run 49 stress 0.08440253
## ... Procrustes: rmse 3.326971e-05 max resid 6.281123e-05
## ... Similar to previous best
## Run 50 stress 0.0933731
## Run 51 stress 0.08503478
## Run 52 stress 0.09374302
## Run 53 stress 0.08503456
## Run 54 stress 0.09268351
## Run 55 stress 0.09969976
## Run 56 stress 0.1038048
## Run 57 stress 0.09159085
## Run 58 stress 0.09337263
## Run 59 stress 0.09407425
## Run 60 stress 0.09374266
## Run 61 stress 0.09337241
## Run 62 stress 0.0941614
## Run 63 stress 0.09407979
## Run 64 stress 0.08440264
## ... Procrustes: rmse 0.0001365347 max resid 0.000249978
## ... Similar to previous best
## Run 65 stress 0.09168933
## Run 66 stress 0.08440253
## ... Procrustes: rmse 1.772816e-05 max resid 3.16791e-05
## ... Similar to previous best
## Run 67 stress 0.08440273
## ... Procrustes: rmse 0.0003539093 max resid 0.0006867037
## ... Similar to previous best
## Run 68 stress 0.2511968
## Run 69 stress 0.0926842
## Run 70 stress 0.08503494
## Run 71 stress 0.2954029
## Run 72 stress 0.09969974
## Run 73 stress 0.330972
## Run 74 stress 0.09465916
## Run 75 stress 0.0926836
## Run 76 stress 0.09760827
## Run 77 stress 0.09268358
## Run 78 stress 0.105285
## Run 79 stress 0.09539193
## Run 80 stress 0.09030393
## Run 81 stress 0.09408011
## Run 82 stress 0.09030393
## Run 83 stress 0.09030393
## Run 84 stress 0.09030399
## Run 85 stress 0.0897387
## Run 86 stress 0.09337265
## Run 87 stress 0.08440273
## ... Procrustes: rmse 0.0003436818 max resid 0.0006664536
## ... Similar to previous best
## Run 88 stress 0.09030403
## Run 89 stress 0.09145322
## Run 90 stress 0.09268322
## Run 91 stress 0.08773482
## Run 92 stress 0.09969978
## Run 93 stress 0.0940797
## Run 94 stress 0.09381844
## Run 95 stress 0.09337235
## Run 96 stress 0.1026215
## Run 97 stress 0.09416144
## Run 98 stress 0.09669828
## Run 99 stress 0.0940711
## Run 100 stress 0.09337257
## Run 101 stress 0.09337291
## Run 102 stress 0.09760838
## Run 103 stress 0.09030406
## Run 104 stress 0.09403437
## Run 105 stress 0.08503514
## Run 106 stress 0.09408004
## Run 107 stress 0.09268375
## Run 108 stress 0.09030396
## Run 109 stress 0.09407965
## Run 110 stress 0.09286086
## Run 111 stress 0.09145331
## Run 112 stress 0.08440256
## ... Procrustes: rmse 0.0002105501 max resid 0.0004099146
## ... Similar to previous best
## Run 113 stress 0.09286086
## Run 114 stress 0.0916893
## Run 115 stress 0.09030404
## Run 116 stress 0.09535476
## Run 117 stress 0.09159093
## Run 118 stress 0.09535543
## Run 119 stress 0.09408011
## Run 120 stress 0.08503518
## Run 121 stress 0.09268318
## Run 122 stress 0.09969989
## Run 123 stress 0.09168927
## Run 124 stress 0.1038046
## Run 125 stress 0.09168951
## Run 126 stress 0.09030398
## Run 127 stress 0.0933727
## Run 128 stress 0.09760832
## Run 129 stress 0.09286093
## Run 130 stress 0.08773469
## Run 131 stress 0.09407994
## Run 132 stress 0.09308986
## Run 133 stress 0.09030402
## Run 134 stress 0.08440272
## ... Procrustes: rmse 0.0001976764 max resid 0.0003547828
## ... Similar to previous best
## Run 135 stress 0.08503458
## Run 136 stress 0.09030398
## Run 137 stress 0.08973872
## Run 138 stress 0.08440259
## ... Procrustes: rmse 9.838802e-05 max resid 0.0001902928
## ... Similar to previous best
## Run 139 stress 0.09407995
## Run 140 stress 0.09407105
## Run 141 stress 0.09416136
## Run 142 stress 0.09145328
## Run 143 stress 0.09712954
## Run 144 stress 0.08503479
## Run 145 stress 0.09030414
## Run 146 stress 0.09159094
## Run 147 stress 0.087735
## Run 148 stress 0.09030403
## Run 149 stress 0.1072863
## Run 150 stress 0.08773467
## Run 151 stress 0.1054543
## Run 152 stress 0.09286084
## Run 153 stress 0.09286094
## Run 154 stress 0.09337281
## Run 155 stress 0.09268358
## Run 156 stress 0.08973889
## Run 157 stress 0.08973883
## Run 158 stress 0.09407967
## Run 159 stress 0.1053423
## Run 160 stress 0.09159087
## Run 161 stress 0.3127475
## Run 162 stress 0.08973874
## Run 163 stress 0.09407966
## Run 164 stress 0.09337303
## Run 165 stress 0.09337269
## Run 166 stress 0.08773487
## Run 167 stress 0.09590847
## Run 168 stress 0.1038038
## Run 169 stress 0.08503456
## Run 170 stress 0.09408001
## Run 171 stress 0.09970002
## Run 172 stress 0.1038047
## Run 173 stress 0.08973865
## Run 174 stress 0.09030411
## Run 175 stress 0.08973886
## Run 176 stress 0.09145323
## Run 177 stress 0.08773472
## Run 178 stress 0.0844027
## ... Procrustes: rmse 0.0001893557 max resid 0.0003816202
## ... Similar to previous best
## Run 179 stress 0.09268323
## Run 180 stress 0.09145324
## Run 181 stress 0.0940797
## Run 182 stress 0.09268322
## Run 183 stress 0.08440257
## ... Procrustes: rmse 8.301856e-05 max resid 0.0001687432
## ... Similar to previous best
## Run 184 stress 0.09159091
## Run 185 stress 0.08440251
## ... New best solution
## ... Procrustes: rmse 8.613108e-05 max resid 0.0001615315
## ... Similar to previous best
## Run 186 stress 0.09030414
## Run 187 stress 0.09030395
## Run 188 stress 0.09159085
## Run 189 stress 0.1038039
## Run 190 stress 0.09407978
## Run 191 stress 0.08503455
## Run 192 stress 0.09407993
## Run 193 stress 0.08440258
## ... Procrustes: rmse 0.0001714919 max resid 0.0003218325
## ... Similar to previous best
## Run 194 stress 0.08440251
## ... New best solution
## ... Procrustes: rmse 1.674406e-05 max resid 3.315666e-05
## ... Similar to previous best
## Run 195 stress 0.09408008
## Run 196 stress 0.09286083
## Run 197 stress 0.0844026
## ... Procrustes: rmse 0.0001692951 max resid 0.0003431881
## ... Similar to previous best
## Run 198 stress 0.09337243
## Run 199 stress 0.08973875
## Run 200 stress 0.09030396
## Run 201 stress 0.09416142
## Run 202 stress 0.08503629
## Run 203 stress 0.09268418
## Run 204 stress 0.08440251
## ... Procrustes: rmse 4.146284e-05 max resid 8.312039e-05
## ... Similar to previous best
## Run 205 stress 0.09445467
## Run 206 stress 0.09969971
## Run 207 stress 0.08773476
## Run 208 stress 0.0926838
## Run 209 stress 0.08440255
## ... Procrustes: rmse 0.0001197575 max resid 0.0002454322
## ... Similar to previous best
## Run 210 stress 0.09145326
## Run 211 stress 0.09159086
## Run 212 stress 0.08773485
## Run 213 stress 0.08440276
## ... Procrustes: rmse 0.0002930588 max resid 0.0005322055
## ... Similar to previous best
## Run 214 stress 0.09417801
## Run 215 stress 0.08973864
## Run 216 stress 0.09268403
## Run 217 stress 0.09539195
## Run 218 stress 0.08503472
## Run 219 stress 0.09168931
## Run 220 stress 0.0940801
## Run 221 stress 0.09268334
## Run 222 stress 0.08440265
## ... Procrustes: rmse 0.0002101057 max resid 0.0004495634
## ... Similar to previous best
## Run 223 stress 0.09286084
## Run 224 stress 0.09374194
## Run 225 stress 0.09159093
## Run 226 stress 0.09145327
## Run 227 stress 0.09416137
## Run 228 stress 0.3134234
## Run 229 stress 0.09145322
## Run 230 stress 0.09535474
## Run 231 stress 0.09464479
## Run 232 stress 0.09760815
## Run 233 stress 0.0897387
## Run 234 stress 0.09380579
## Run 235 stress 0.09286088
## Run 236 stress 0.09416138
## Run 237 stress 0.09159083
## Run 238 stress 0.0850366
## Run 239 stress 0.1038048
## Run 240 stress 0.09030413
## Run 241 stress 0.08973863
## Run 242 stress 0.1038051
## Run 243 stress 0.0933728
## Run 244 stress 0.09407973
## Run 245 stress 0.09760848
## Run 246 stress 0.08773471
## Run 247 stress 0.09408012
## Run 248 stress 0.09286083
## Run 249 stress 0.08440254
## ... Procrustes: rmse 0.0001213456 max resid 0.0002359459
## ... Similar to previous best
## Run 250 stress 0.08440255
## ... Procrustes: rmse 0.0001115774 max resid 0.0002417033
## ... Similar to previous best
## Run 251 stress 0.09337285
## Run 252 stress 0.08503622
## Run 253 stress 0.09535416
## Run 254 stress 0.2663889
## Run 255 stress 0.09407975
## Run 256 stress 0.09337305
## Run 257 stress 0.08503496
## Run 258 stress 0.09145321
## Run 259 stress 0.09286095
## Run 260 stress 0.1054535
## Run 261 stress 0.09030399
## Run 262 stress 0.09308976
## Run 263 stress 0.09408006
## Run 264 stress 0.09539193
## Run 265 stress 0.09416132
## Run 266 stress 0.09445416
## Run 267 stress 0.09417786
## Run 268 stress 0.08440269
## ... Procrustes: rmse 0.0002458255 max resid 0.0004509482
## ... Similar to previous best
## Run 269 stress 0.09407968
## Run 270 stress 0.09168946
## Run 271 stress 0.09145336
## Run 272 stress 0.09465917
## Run 273 stress 0.09286083
## Run 274 stress 0.08440252
## ... Procrustes: rmse 3.077977e-05 max resid 5.303327e-05
## ... Similar to previous best
## Run 275 stress 0.08973877
## Run 276 stress 0.09407973
## Run 277 stress 0.09168944
## Run 278 stress 0.09030394
## Run 279 stress 0.09030407
## Run 280 stress 0.093743
## Run 281 stress 0.09969978
## Run 282 stress 0.09268345
## Run 283 stress 0.09465904
## Run 284 stress 0.09760826
## Run 285 stress 0.09407992
## Run 286 stress 0.09712976
## Run 287 stress 0.09145341
## Run 288 stress 0.08503459
## Run 289 stress 0.1052849
## Run 290 stress 0.09159084
## Run 291 stress 0.08440265
## ... Procrustes: rmse 0.0002209764 max resid 0.0004122987
## ... Similar to previous best
## Run 292 stress 0.1038041
## Run 293 stress 0.08440251
## ... Procrustes: rmse 3.9695e-05 max resid 9.232903e-05
## ... Similar to previous best
## Run 294 stress 0.0940799
## Run 295 stress 0.08440254
## ... Procrustes: rmse 0.0001090816 max resid 0.0002232305
## ... Similar to previous best
## Run 296 stress 0.09168934
## Run 297 stress 0.246648
## Run 298 stress 0.09286091
## Run 299 stress 0.0971294
## Run 300 stress 0.08440254
## ... Procrustes: rmse 9.95431e-05 max resid 0.0001960732
## ... Similar to previous best
## Run 301 stress 0.09465904
## Run 302 stress 0.09145323
## Run 303 stress 0.09407967
## Run 304 stress 0.09407979
## Run 305 stress 0.0933731
## Run 306 stress 0.09268318
## Run 307 stress 0.08503572
## Run 308 stress 0.09408005
## Run 309 stress 0.09374279
## Run 310 stress 0.09417808
## Run 311 stress 0.09268374
## Run 312 stress 0.08503644
## Run 313 stress 0.09445479
## Run 314 stress 0.09337265
## Run 315 stress 0.08973866
## Run 316 stress 0.09374196
## Run 317 stress 0.09159089
## Run 318 stress 0.09268401
## Run 319 stress 0.09407972
## Run 320 stress 0.0959091
## Run 321 stress 0.09159089
## Run 322 stress 0.08440252
## ... Procrustes: rmse 3.7855e-05 max resid 7.384154e-05
## ... Similar to previous best
## Run 323 stress 0.09407968
## Run 324 stress 0.09286083
## Run 325 stress 0.08503476
## Run 326 stress 0.08973863
## Run 327 stress 0.09669844
## Run 328 stress 0.2688899
## Run 329 stress 0.0933728
## Run 330 stress 0.09145329
## Run 331 stress 0.09465909
## Run 332 stress 0.09760837
## Run 333 stress 0.0926833
## Run 334 stress 0.09268386
## Run 335 stress 0.08503585
## Run 336 stress 0.09407991
## Run 337 stress 0.09969967
## Run 338 stress 0.1052848
## Run 339 stress 0.09416147
## Run 340 stress 0.1026215
## Run 341 stress 0.08773472
## Run 342 stress 0.08440251
## ... Procrustes: rmse 2.676859e-05 max resid 4.617254e-05
## ... Similar to previous best
## Run 343 stress 0.09030397
## Run 344 stress 0.09337279
## Run 345 stress 0.08503552
## Run 346 stress 0.09145335
## Run 347 stress 0.08773486
## Run 348 stress 0.10196
## Run 349 stress 0.0844026
## ... Procrustes: rmse 0.0001644971 max resid 0.0003147319
## ... Similar to previous best
## Run 350 stress 0.1038084
## Run 351 stress 0.09969968
## Run 352 stress 0.09159087
## Run 353 stress 0.09030403
## Run 354 stress 0.08440267
## ... Procrustes: rmse 0.000226478 max resid 0.000453034
## ... Similar to previous best
## Run 355 stress 0.09337265
## Run 356 stress 0.09408004
## Run 357 stress 0.08440255
## ... Procrustes: rmse 0.0001168911 max resid 0.0002270477
## ... Similar to previous best
## Run 358 stress 0.09374244
## Run 359 stress 0.08773474
## Run 360 stress 0.097212
## Run 361 stress 0.0897388
## Run 362 stress 0.08440269
## ... Procrustes: rmse 0.0002488569 max resid 0.0004592215
## ... Similar to previous best
## Run 363 stress 0.090304
## Run 364 stress 0.0897388
## Run 365 stress 0.09381846
## Run 366 stress 0.09030411
## Run 367 stress 0.09535518
## Run 368 stress 0.09380579
## Run 369 stress 0.0940799
## Run 370 stress 0.09159085
## Run 371 stress 0.09337277
## Run 372 stress 0.0850366
## Run 373 stress 0.09159086
## Run 374 stress 0.09407992
## Run 375 stress 0.09308955
## Run 376 stress 0.09268371
## Run 377 stress 0.09539192
## Run 378 stress 0.09407992
## Run 379 stress 0.09337239
## Run 380 stress 0.09465905
## Run 381 stress 0.09445509
## Run 382 stress 0.09721201
## Run 383 stress 0.093743
## Run 384 stress 0.09407986
## Run 385 stress 0.09465905
## Run 386 stress 0.09381855
## Run 387 stress 0.09159092
## Run 388 stress 0.09465904
## Run 389 stress 0.09416146
## Run 390 stress 0.08503616
## Run 391 stress 0.1038047
## Run 392 stress 0.09286083
## Run 393 stress 0.09030402
## Run 394 stress 0.0915909
## Run 395 stress 0.09030394
## Run 396 stress 0.0897387
## Run 397 stress 0.09030399
## Run 398 stress 0.09159094
## Run 399 stress 0.08773474
## Run 400 stress 0.1038092
## Run 401 stress 0.09030401
## Run 402 stress 0.08773482
## Run 403 stress 0.322409
## Run 404 stress 0.100461
## Run 405 stress 0.09030407
## Run 406 stress 0.08773475
## Run 407 stress 0.2659608
## Run 408 stress 0.09145321
## Run 409 stress 0.09286084
## Run 410 stress 0.0940055
## Run 411 stress 0.09760813
## Run 412 stress 0.09374294
## Run 413 stress 0.0897387
## Run 414 stress 0.09268349
## Run 415 stress 0.09268336
## Run 416 stress 0.09407499
## Run 417 stress 0.1084723
## Run 418 stress 0.08773466
## Run 419 stress 0.09308982
## Run 420 stress 0.09286094
## Run 421 stress 0.090304
## Run 422 stress 0.08973868
## Run 423 stress 0.0953548
## Run 424 stress 0.09535507
## Run 425 stress 0.09669878
## Run 426 stress 0.0850349
## Run 427 stress 0.08973865
## Run 428 stress 0.09590684
## Run 429 stress 0.09408018
## Run 430 stress 0.09407117
## Run 431 stress 0.08440252
## ... Procrustes: rmse 5.378787e-05 max resid 0.0001091697
## ... Similar to previous best
## Run 432 stress 0.09590941
## Run 433 stress 0.09030393
## Run 434 stress 0.08503616
## Run 435 stress 0.09407987
## Run 436 stress 0.09321734
## Run 437 stress 0.09286095
## Run 438 stress 0.09407978
## Run 439 stress 0.09145327
## Run 440 stress 0.08773494
## Run 441 stress 0.08503456
## Run 442 stress 0.09416143
## Run 443 stress 0.09337235
## Run 444 stress 0.09969964
## Run 445 stress 0.09380575
## Run 446 stress 0.09030407
## Run 447 stress 0.09030393
## Run 448 stress 0.1095796
## Run 449 stress 0.0850347
## Run 450 stress 0.08440252
## ... Procrustes: rmse 7.746526e-05 max resid 0.0001425796
## ... Similar to previous best
## Run 451 stress 0.09308955
## Run 452 stress 0.09465907
## Run 453 stress 0.08773482
## Run 454 stress 0.08503499
## Run 455 stress 0.09400518
## Run 456 stress 0.09337288
## Run 457 stress 0.0850361
## Run 458 stress 0.09145323
## Run 459 stress 0.0844027
## ... Procrustes: rmse 0.0002543567 max resid 0.0004660647
## ... Similar to previous best
## Run 460 stress 0.09145322
## Run 461 stress 0.2456114
## Run 462 stress 0.09380579
## Run 463 stress 0.09308946
## Run 464 stress 0.09159087
## Run 465 stress 0.103805
## Run 466 stress 0.0914533
## Run 467 stress 0.09407987
## Run 468 stress 0.09268399
## Run 469 stress 0.09168954
## Run 470 stress 0.09159084
## Run 471 stress 0.09407992
## Run 472 stress 0.09268353
## Run 473 stress 0.09407969
## Run 474 stress 0.0850349
## Run 475 stress 0.09030393
## Run 476 stress 0.1004611
## Run 477 stress 0.2931636
## Run 478 stress 0.09168944
## Run 479 stress 0.09400516
## Run 480 stress 0.09464428
## Run 481 stress 0.09407137
## Run 482 stress 0.08973872
## Run 483 stress 0.09969985
## Run 484 stress 0.08773496
## Run 485 stress 0.09407125
## Run 486 stress 0.09337249
## Run 487 stress 0.09539195
## Run 488 stress 0.08503559
## Run 489 stress 0.2511907
## Run 490 stress 0.09168931
## Run 491 stress 0.08503531
## Run 492 stress 0.0903041
## Run 493 stress 0.0926835
## Run 494 stress 0.08503678
## Run 495 stress 0.09159091
## Run 496 stress 0.09407982
## Run 497 stress 0.08503467
## Run 498 stress 0.09416131
## Run 499 stress 0.09308954
## Run 500 stress 0.08440253
## ... Procrustes: rmse 2.028073e-05 max resid 4.29064e-05
## ... Similar to previous best
## *** Best solution repeated 24 times# Ocean sites and mixed lakes
jpresom_NMDS <- metaMDS(jpresom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.07160265
## Run 1 stress 0.07160266
## ... Procrustes: rmse 6.106531e-05 max resid 0.0001456611
## ... Similar to previous best
## Run 2 stress 0.07176075
## ... Procrustes: rmse 0.01168667 max resid 0.03165021
## Run 3 stress 0.07393039
## Run 4 stress 0.07160268
## ... Procrustes: rmse 9.646176e-05 max resid 0.0002269556
## ... Similar to previous best
## Run 5 stress 0.07176075
## ... Procrustes: rmse 0.0116946 max resid 0.03161606
## Run 6 stress 0.07160266
## ... Procrustes: rmse 5.9476e-05 max resid 0.0001408304
## ... Similar to previous best
## Run 7 stress 0.07160265
## ... Procrustes: rmse 3.742235e-06 max resid 8.795747e-06
## ... Similar to previous best
## Run 8 stress 0.07176074
## ... Procrustes: rmse 0.0116912 max resid 0.03162807
## Run 9 stress 0.07393042
## Run 10 stress 0.07160265
## ... Procrustes: rmse 2.815349e-05 max resid 6.667229e-05
## ... Similar to previous best
## Run 11 stress 0.0830172
## Run 12 stress 0.07160269
## ... Procrustes: rmse 0.0001010798 max resid 0.0002411241
## ... Similar to previous best
## Run 13 stress 0.08301708
## Run 14 stress 0.07393039
## Run 15 stress 0.07160267
## ... Procrustes: rmse 6.330844e-05 max resid 0.0001446288
## ... Similar to previous best
## Run 16 stress 0.08301718
## Run 17 stress 0.07160266
## ... Procrustes: rmse 5.477695e-05 max resid 0.0001277434
## ... Similar to previous best
## Run 18 stress 0.07160265
## ... Procrustes: rmse 2.703479e-05 max resid 6.123983e-05
## ... Similar to previous best
## Run 19 stress 0.0717608
## ... Procrustes: rmse 0.01167878 max resid 0.03169036
## Run 20 stress 0.07160272
## ... Procrustes: rmse 0.0001371422 max resid 0.0003221557
## ... Similar to previous best
## Run 21 stress 0.07393041
## Run 22 stress 0.07393039
## Run 23 stress 0.07160265
## ... Procrustes: rmse 1.478691e-05 max resid 3.460058e-05
## ... Similar to previous best
## Run 24 stress 0.07176075
## ... Procrustes: rmse 0.01168615 max resid 0.03165303
## Run 25 stress 0.07393039
## Run 26 stress 0.07160266
## ... Procrustes: rmse 2.021473e-05 max resid 2.920199e-05
## ... Similar to previous best
## Run 27 stress 0.07160267
## ... Procrustes: rmse 5.175875e-05 max resid 0.0001252959
## ... Similar to previous best
## Run 28 stress 0.07160265
## ... Procrustes: rmse 4.634309e-05 max resid 0.0001096226
## ... Similar to previous best
## Run 29 stress 0.07176081
## ... Procrustes: rmse 0.01170196 max resid 0.03157963
## Run 30 stress 0.07160275
## ... Procrustes: rmse 0.0001742492 max resid 0.0004147339
## ... Similar to previous best
## Run 31 stress 0.07160267
## ... Procrustes: rmse 5.979338e-05 max resid 0.0001329137
## ... Similar to previous best
## Run 32 stress 0.07160269
## ... Procrustes: rmse 0.0001148347 max resid 0.0002696276
## ... Similar to previous best
## Run 33 stress 0.07160271
## ... Procrustes: rmse 0.0001268039 max resid 0.0002926391
## ... Similar to previous best
## Run 34 stress 0.07160267
## ... Procrustes: rmse 8.385477e-05 max resid 0.000192612
## ... Similar to previous best
## Run 35 stress 0.07393039
## Run 36 stress 0.0739304
## Run 37 stress 0.07160275
## ... Procrustes: rmse 0.0001773252 max resid 0.0004212743
## ... Similar to previous best
## Run 38 stress 0.07176083
## ... Procrustes: rmse 0.01167814 max resid 0.03169246
## Run 39 stress 0.0739304
## Run 40 stress 0.07393038
## Run 41 stress 0.07160266
## ... Procrustes: rmse 5.303867e-05 max resid 0.0001250303
## ... Similar to previous best
## Run 42 stress 0.07160265
## ... Procrustes: rmse 1.812574e-05 max resid 4.245425e-05
## ... Similar to previous best
## Run 43 stress 0.07393038
## Run 44 stress 0.07393039
## Run 45 stress 0.07160265
## ... Procrustes: rmse 2.351955e-05 max resid 5.504966e-05
## ... Similar to previous best
## Run 46 stress 0.07160265
## ... Procrustes: rmse 3.771566e-05 max resid 8.586507e-05
## ... Similar to previous best
## Run 47 stress 0.08301705
## Run 48 stress 0.07160265
## ... Procrustes: rmse 2.747905e-05 max resid 6.35188e-05
## ... Similar to previous best
## Run 49 stress 0.07160268
## ... Procrustes: rmse 9.999403e-05 max resid 0.0002344555
## ... Similar to previous best
## Run 50 stress 0.07160275
## ... Procrustes: rmse 0.000155951 max resid 0.0003621614
## ... Similar to previous best
## Run 51 stress 0.07160272
## ... Procrustes: rmse 0.0001494183 max resid 0.0003527279
## ... Similar to previous best
## Run 52 stress 0.07160269
## ... Procrustes: rmse 9.67157e-05 max resid 0.0002310317
## ... Similar to previous best
## Run 53 stress 0.07160278
## ... Procrustes: rmse 0.0001890865 max resid 0.0004480426
## ... Similar to previous best
## Run 54 stress 0.07160265
## ... Procrustes: rmse 3.298277e-05 max resid 7.754677e-05
## ... Similar to previous best
## Run 55 stress 0.07160271
## ... Procrustes: rmse 0.0001169774 max resid 0.0002676868
## ... Similar to previous best
## Run 56 stress 0.07176076
## ... Procrustes: rmse 0.01168314 max resid 0.03166732
## Run 57 stress 0.07160268
## ... Procrustes: rmse 2.965047e-05 max resid 6.19872e-05
## ... Similar to previous best
## Run 58 stress 0.07160266
## ... Procrustes: rmse 2.919964e-05 max resid 6.276234e-05
## ... Similar to previous best
## Run 59 stress 0.07160266
## ... Procrustes: rmse 6.034397e-05 max resid 0.0001442513
## ... Similar to previous best
## Run 60 stress 0.07393039
## Run 61 stress 0.07176076
## ... Procrustes: rmse 0.01168388 max resid 0.03166461
## Run 62 stress 0.08301706
## Run 63 stress 0.07393039
## Run 64 stress 0.07393039
## Run 65 stress 0.07393039
## Run 66 stress 0.07176076
## ... Procrustes: rmse 0.01168365 max resid 0.03166565
## Run 67 stress 0.07393039
## Run 68 stress 0.07393039
## Run 69 stress 0.07160272
## ... Procrustes: rmse 0.0001479585 max resid 0.0003520213
## ... Similar to previous best
## Run 70 stress 0.07160267
## ... Procrustes: rmse 7.470295e-05 max resid 0.000175725
## ... Similar to previous best
## Run 71 stress 0.07176075
## ... Procrustes: rmse 0.01169534 max resid 0.03161196
## Run 72 stress 0.07160271
## ... Procrustes: rmse 0.000133492 max resid 0.0003192267
## ... Similar to previous best
## Run 73 stress 0.07160274
## ... Procrustes: rmse 0.0001658751 max resid 0.0003902609
## ... Similar to previous best
## Run 74 stress 0.07176077
## ... Procrustes: rmse 0.01169673 max resid 0.03160548
## Run 75 stress 0.07176075
## ... Procrustes: rmse 0.01169372 max resid 0.03161961
## Run 76 stress 0.07160269
## ... Procrustes: rmse 0.0001031232 max resid 0.0002425756
## ... Similar to previous best
## Run 77 stress 0.07160273
## ... Procrustes: rmse 0.0001619813 max resid 0.0003825301
## ... Similar to previous best
## Run 78 stress 0.07160268
## ... Procrustes: rmse 6.870544e-05 max resid 0.0001624089
## ... Similar to previous best
## Run 79 stress 0.07393039
## Run 80 stress 0.07160279
## ... Procrustes: rmse 0.0001846093 max resid 0.0004287958
## ... Similar to previous best
## Run 81 stress 0.07393039
## Run 82 stress 0.07393042
## Run 83 stress 0.07393039
## Run 84 stress 0.07176078
## ... Procrustes: rmse 0.01169916 max resid 0.03159533
## Run 85 stress 0.08301717
## Run 86 stress 0.07393038
## Run 87 stress 0.07176077
## ... Procrustes: rmse 0.01168222 max resid 0.03167233
## Run 88 stress 0.2590752
## Run 89 stress 0.07160265
## ... Procrustes: rmse 2.094226e-05 max resid 4.373006e-05
## ... Similar to previous best
## Run 90 stress 0.08301708
## Run 91 stress 0.07393041
## Run 92 stress 0.07176075
## ... Procrustes: rmse 0.01169021 max resid 0.0316401
## Run 93 stress 0.07176076
## ... Procrustes: rmse 0.01168455 max resid 0.03166245
## Run 94 stress 0.07160274
## ... Procrustes: rmse 0.0001579666 max resid 0.0003743676
## ... Similar to previous best
## Run 95 stress 0.07160271
## ... Procrustes: rmse 0.0001330433 max resid 0.0003165675
## ... Similar to previous best
## Run 96 stress 0.07160266
## ... Procrustes: rmse 7.104852e-05 max resid 0.0001672836
## ... Similar to previous best
## Run 97 stress 0.07160266
## ... Procrustes: rmse 6.844547e-05 max resid 0.0001617512
## ... Similar to previous best
## Run 98 stress 0.07176076
## ... Procrustes: rmse 0.01169551 max resid 0.03161138
## Run 99 stress 0.0739304
## Run 100 stress 0.08301706
## Run 101 stress 0.07160265
## ... Procrustes: rmse 3.482744e-05 max resid 8.210654e-05
## ... Similar to previous best
## Run 102 stress 0.07393039
## Run 103 stress 0.07160266
## ... Procrustes: rmse 4.112389e-05 max resid 9.907669e-05
## ... Similar to previous best
## Run 104 stress 0.07160266
## ... Procrustes: rmse 6.384156e-05 max resid 0.0001482147
## ... Similar to previous best
## Run 105 stress 0.07160267
## ... Procrustes: rmse 8.427144e-05 max resid 0.0001973292
## ... Similar to previous best
## Run 106 stress 0.07176075
## ... Procrustes: rmse 0.01168768 max resid 0.03164511
## Run 107 stress 0.07176077
## ... Procrustes: rmse 0.01169763 max resid 0.03160171
## Run 108 stress 0.07160269
## ... Procrustes: rmse 7.989335e-05 max resid 0.0001865972
## ... Similar to previous best
## Run 109 stress 0.07160266
## ... Procrustes: rmse 6.736139e-05 max resid 0.0001602647
## ... Similar to previous best
## Run 110 stress 0.07393041
## Run 111 stress 0.07393039
## Run 112 stress 0.07393039
## Run 113 stress 0.07160265
## ... Procrustes: rmse 3.353346e-05 max resid 8.135217e-05
## ... Similar to previous best
## Run 114 stress 0.07393038
## Run 115 stress 0.07176075
## ... Procrustes: rmse 0.0116858 max resid 0.03165809
## Run 116 stress 0.07176075
## ... Procrustes: rmse 0.01168701 max resid 0.03164909
## Run 117 stress 0.07160265
## ... Procrustes: rmse 1.449236e-05 max resid 3.452698e-05
## ... Similar to previous best
## Run 118 stress 0.07160275
## ... Procrustes: rmse 0.0001450384 max resid 0.0003313765
## ... Similar to previous best
## Run 119 stress 0.07160265
## ... Procrustes: rmse 2.76184e-05 max resid 6.438965e-05
## ... Similar to previous best
## Run 120 stress 0.07393039
## Run 121 stress 0.08301712
## Run 122 stress 0.07176081
## ... Procrustes: rmse 0.01167397 max resid 0.03168819
## Run 123 stress 0.07160269
## ... Procrustes: rmse 0.0001174243 max resid 0.0002767288
## ... Similar to previous best
## Run 124 stress 0.07393038
## Run 125 stress 0.07160272
## ... Procrustes: rmse 0.0001545011 max resid 0.0003653387
## ... Similar to previous best
## Run 126 stress 0.07160277
## ... Procrustes: rmse 0.000191297 max resid 0.0004514941
## ... Similar to previous best
## Run 127 stress 0.07176075
## ... Procrustes: rmse 0.01169305 max resid 0.03162192
## Run 128 stress 0.07160265
## ... Procrustes: rmse 3.469812e-05 max resid 8.021517e-05
## ... Similar to previous best
## Run 129 stress 0.07393042
## Run 130 stress 0.07176079
## ... Procrustes: rmse 0.01170038 max resid 0.03159304
## Run 131 stress 0.07160271
## ... Procrustes: rmse 0.0001360087 max resid 0.0003230779
## ... Similar to previous best
## Run 132 stress 0.0717608
## ... Procrustes: rmse 0.01170147 max resid 0.03157771
## Run 133 stress 0.08301716
## Run 134 stress 0.0716028
## ... Procrustes: rmse 0.000166137 max resid 0.0003778947
## ... Similar to previous best
## Run 135 stress 0.07160274
## ... Procrustes: rmse 0.0001562629 max resid 0.0003727927
## ... Similar to previous best
## Run 136 stress 0.07393039
## Run 137 stress 0.07176082
## ... Procrustes: rmse 0.01170407 max resid 0.03157511
## Run 138 stress 0.07160265
## ... Procrustes: rmse 1.973499e-05 max resid 4.594623e-05
## ... Similar to previous best
## Run 139 stress 0.07160274
## ... Procrustes: rmse 0.0001643519 max resid 0.0003867434
## ... Similar to previous best
## Run 140 stress 0.07393039
## Run 141 stress 0.07160268
## ... Procrustes: rmse 8.951241e-05 max resid 0.0002134394
## ... Similar to previous best
## Run 142 stress 0.07393039
## Run 143 stress 0.07176079
## ... Procrustes: rmse 0.01170041 max resid 0.03158925
## Run 144 stress 0.07393039
## Run 145 stress 0.08301718
## Run 146 stress 0.07160268
## ... Procrustes: rmse 9.583863e-05 max resid 0.0002282422
## ... Similar to previous best
## Run 147 stress 0.07393039
## Run 148 stress 0.07176075
## ... Procrustes: rmse 0.01168625 max resid 0.03165406
## Run 149 stress 0.07393039
## Run 150 stress 0.07160265
## ... Procrustes: rmse 3.462578e-05 max resid 8.135235e-05
## ... Similar to previous best
## Run 151 stress 0.07160266
## ... Procrustes: rmse 6.05647e-05 max resid 0.000142976
## ... Similar to previous best
## Run 152 stress 0.08301723
## Run 153 stress 0.07160279
## ... Procrustes: rmse 0.0001941418 max resid 0.0004654499
## ... Similar to previous best
## Run 154 stress 0.07160268
## ... Procrustes: rmse 9.817495e-05 max resid 0.0002314039
## ... Similar to previous best
## Run 155 stress 0.07176076
## ... Procrustes: rmse 0.01168273 max resid 0.03166982
## Run 156 stress 0.07393039
## Run 157 stress 0.07160274
## ... Procrustes: rmse 0.0001668921 max resid 0.000395484
## ... Similar to previous best
## Run 158 stress 0.07160265
## ... Procrustes: rmse 4.082996e-05 max resid 9.668881e-05
## ... Similar to previous best
## Run 159 stress 0.0739304
## Run 160 stress 0.07176083
## ... Procrustes: rmse 0.01170462 max resid 0.03156894
## Run 161 stress 0.07393039
## Run 162 stress 0.07160265
## ... New best solution
## ... Procrustes: rmse 5.619934e-06 max resid 1.271432e-05
## ... Similar to previous best
## Run 163 stress 0.07160273
## ... Procrustes: rmse 0.0001506462 max resid 0.000356006
## ... Similar to previous best
## Run 164 stress 0.07176078
## ... Procrustes: rmse 0.01169926 max resid 0.03160685
## Run 165 stress 0.07160267
## ... Procrustes: rmse 8.653814e-05 max resid 0.0002050846
## ... Similar to previous best
## Run 166 stress 0.07160272
## ... Procrustes: rmse 0.0001423307 max resid 0.0003321306
## ... Similar to previous best
## Run 167 stress 0.07160265
## ... Procrustes: rmse 9.655595e-06 max resid 2.112013e-05
## ... Similar to previous best
## Run 168 stress 0.07160267
## ... Procrustes: rmse 7.861003e-05 max resid 0.0001886442
## ... Similar to previous best
## Run 169 stress 0.0717608
## ... Procrustes: rmse 0.01170309 max resid 0.0315913
## Run 170 stress 0.07393038
## Run 171 stress 0.07160265
## ... Procrustes: rmse 4.441446e-05 max resid 0.0001011929
## ... Similar to previous best
## Run 172 stress 0.07176077
## ... Procrustes: rmse 0.01169883 max resid 0.031611
## Run 173 stress 0.07176084
## ... Procrustes: rmse 0.01170677 max resid 0.03157237
## Run 174 stress 0.07176078
## ... Procrustes: rmse 0.01169943 max resid 0.03160996
## Run 175 stress 0.07160265
## ... Procrustes: rmse 1.659485e-05 max resid 3.669776e-05
## ... Similar to previous best
## Run 176 stress 0.0717608
## ... Procrustes: rmse 0.01170356 max resid 0.0315888
## Run 177 stress 0.07160265
## ... Procrustes: rmse 1.632178e-05 max resid 3.916494e-05
## ... Similar to previous best
## Run 178 stress 0.07160268
## ... Procrustes: rmse 8.570283e-05 max resid 0.0001968139
## ... Similar to previous best
## Run 179 stress 0.07176079
## ... Procrustes: rmse 0.01170199 max resid 0.03159393
## Run 180 stress 0.07393039
## Run 181 stress 0.2590752
## Run 182 stress 0.07176082
## ... Procrustes: rmse 0.01170472 max resid 0.03158234
## Run 183 stress 0.0716027
## ... Procrustes: rmse 0.0001191968 max resid 0.0002845172
## ... Similar to previous best
## Run 184 stress 0.07160267
## ... Procrustes: rmse 7.734373e-05 max resid 0.0001793604
## ... Similar to previous best
## Run 185 stress 0.07393041
## Run 186 stress 0.07160272
## ... Procrustes: rmse 0.0001458893 max resid 0.0003509757
## ... Similar to previous best
## Run 187 stress 0.07160267
## ... Procrustes: rmse 8.994857e-05 max resid 0.0002141146
## ... Similar to previous best
## Run 188 stress 0.0716027
## ... Procrustes: rmse 0.0001221685 max resid 0.0002884553
## ... Similar to previous best
## Run 189 stress 0.07393039
## Run 190 stress 0.07160265
## ... Procrustes: rmse 1.691681e-05 max resid 3.830193e-05
## ... Similar to previous best
## Run 191 stress 0.07176083
## ... Procrustes: rmse 0.01170603 max resid 0.03157568
## Run 192 stress 0.07160266
## ... Procrustes: rmse 4.489198e-05 max resid 0.000106082
## ... Similar to previous best
## Run 193 stress 0.07160269
## ... Procrustes: rmse 0.0001030454 max resid 0.0002481922
## ... Similar to previous best
## Run 194 stress 0.0716027
## ... Procrustes: rmse 0.0001013929 max resid 0.0002353128
## ... Similar to previous best
## Run 195 stress 0.07176075
## ... Procrustes: rmse 0.01168878 max resid 0.03166555
## Run 196 stress 0.0716027
## ... Procrustes: rmse 0.0001150503 max resid 0.0002659311
## ... Similar to previous best
## Run 197 stress 0.0716027
## ... Procrustes: rmse 0.0001265313 max resid 0.0003011861
## ... Similar to previous best
## Run 198 stress 0.07393039
## Run 199 stress 0.07176077
## ... Procrustes: rmse 0.0116963 max resid 0.0316197
## Run 200 stress 0.07393039
## Run 201 stress 0.07393039
## Run 202 stress 0.08301708
## Run 203 stress 0.07393039
## Run 204 stress 0.07160265
## ... Procrustes: rmse 4.41391e-05 max resid 0.0001053897
## ... Similar to previous best
## Run 205 stress 0.07393039
## Run 206 stress 0.07160268
## ... Procrustes: rmse 9.374252e-05 max resid 0.0002275697
## ... Similar to previous best
## Run 207 stress 0.07176077
## ... Procrustes: rmse 0.01169899 max resid 0.03161077
## Run 208 stress 0.07160268
## ... Procrustes: rmse 9.371192e-05 max resid 0.0002251194
## ... Similar to previous best
## Run 209 stress 0.07160265
## ... Procrustes: rmse 3.813886e-05 max resid 8.759912e-05
## ... Similar to previous best
## Run 210 stress 0.07393038
## Run 211 stress 0.08301717
## Run 212 stress 0.0716027
## ... Procrustes: rmse 0.0001183307 max resid 0.0002851444
## ... Similar to previous best
## Run 213 stress 0.07160266
## ... Procrustes: rmse 3.065791e-05 max resid 6.298398e-05
## ... Similar to previous best
## Run 214 stress 0.07393039
## Run 215 stress 0.07160267
## ... Procrustes: rmse 7.3897e-05 max resid 0.0001754248
## ... Similar to previous best
## Run 216 stress 0.07160271
## ... Procrustes: rmse 0.0001353685 max resid 0.0003240993
## ... Similar to previous best
## Run 217 stress 0.07176074
## ... Procrustes: rmse 0.01169049 max resid 0.03165037
## Run 218 stress 0.07176075
## ... Procrustes: rmse 0.01169639 max resid 0.03162109
## Run 219 stress 0.07393039
## Run 220 stress 0.0739304
## Run 221 stress 0.07393041
## Run 222 stress 0.07176076
## ... Procrustes: rmse 0.01168551 max resid 0.03167233
## Run 223 stress 0.07176087
## ... Procrustes: rmse 0.01167479 max resid 0.03172247
## Run 224 stress 0.07160266
## ... Procrustes: rmse 6.012206e-05 max resid 0.0001398755
## ... Similar to previous best
## Run 225 stress 0.07393039
## Run 226 stress 0.07160278
## ... Procrustes: rmse 0.0001673096 max resid 0.0004044414
## ... Similar to previous best
## Run 227 stress 0.07176078
## ... Procrustes: rmse 0.01170054 max resid 0.03160727
## Run 228 stress 0.0716027
## ... Procrustes: rmse 0.0001297625 max resid 0.0003102417
## ... Similar to previous best
## Run 229 stress 0.0739304
## Run 230 stress 0.07160269
## ... Procrustes: rmse 0.0001152507 max resid 0.0002745046
## ... Similar to previous best
## Run 231 stress 0.3553676
## Run 232 stress 0.08301717
## Run 233 stress 0.07176075
## ... Procrustes: rmse 0.01169565 max resid 0.03163042
## Run 234 stress 0.07160269
## ... Procrustes: rmse 8.649651e-05 max resid 0.0002169687
## ... Similar to previous best
## Run 235 stress 0.07160266
## ... Procrustes: rmse 5.962711e-05 max resid 0.0001431647
## ... Similar to previous best
## Run 236 stress 0.07176075
## ... Procrustes: rmse 0.01169041 max resid 0.03163428
## Run 237 stress 0.07393039
## Run 238 stress 0.07160268
## ... Procrustes: rmse 0.0001012951 max resid 0.0002413684
## ... Similar to previous best
## Run 239 stress 0.08301712
## Run 240 stress 0.0716027
## ... Procrustes: rmse 0.0001274372 max resid 0.0003030719
## ... Similar to previous best
## Run 241 stress 0.07393039
## Run 242 stress 0.07160268
## ... Procrustes: rmse 9.802366e-05 max resid 0.000228185
## ... Similar to previous best
## Run 243 stress 0.07176075
## ... Procrustes: rmse 0.0116931 max resid 0.03163293
## Run 244 stress 0.0739304
## Run 245 stress 0.07160271
## ... Procrustes: rmse 0.0001283444 max resid 0.0003010782
## ... Similar to previous best
## Run 246 stress 0.0739304
## Run 247 stress 0.07160266
## ... Procrustes: rmse 7.239306e-05 max resid 0.0001739496
## ... Similar to previous best
## Run 248 stress 0.07393039
## Run 249 stress 0.07160266
## ... Procrustes: rmse 6.447712e-05 max resid 0.0001558857
## ... Similar to previous best
## Run 250 stress 0.08301705
## Run 251 stress 0.07176076
## ... Procrustes: rmse 0.01168526 max resid 0.03167329
## Run 252 stress 0.07176087
## ... Procrustes: rmse 0.01167479 max resid 0.03172663
## Run 253 stress 0.0739304
## Run 254 stress 0.07160266
## ... Procrustes: rmse 6.712724e-05 max resid 0.0001595119
## ... Similar to previous best
## Run 255 stress 0.07160266
## ... Procrustes: rmse 6.974063e-05 max resid 0.0001604577
## ... Similar to previous best
## Run 256 stress 0.07160265
## ... Procrustes: rmse 2.284846e-05 max resid 5.406245e-05
## ... Similar to previous best
## Run 257 stress 0.07176076
## ... Procrustes: rmse 0.01168499 max resid 0.03167487
## Run 258 stress 0.07160267
## ... Procrustes: rmse 7.798265e-05 max resid 0.0001865566
## ... Similar to previous best
## Run 259 stress 0.0830171
## Run 260 stress 0.07176075
## ... Procrustes: rmse 0.0116889 max resid 0.03165705
## Run 261 stress 0.07393039
## Run 262 stress 0.07176077
## ... Procrustes: rmse 0.01169891 max resid 0.03161118
## Run 263 stress 0.07160275
## ... Procrustes: rmse 0.0001735544 max resid 0.0004162883
## ... Similar to previous best
## Run 264 stress 0.07160266
## ... Procrustes: rmse 4.183227e-05 max resid 0.0001007711
## ... Similar to previous best
## Run 265 stress 0.07176076
## ... Procrustes: rmse 0.01168746 max resid 0.03166157
## Run 266 stress 0.07393039
## Run 267 stress 0.07160271
## ... Procrustes: rmse 0.0001347905 max resid 0.0003238124
## ... Similar to previous best
## Run 268 stress 0.07160265
## ... Procrustes: rmse 5.691254e-06 max resid 1.042203e-05
## ... Similar to previous best
## Run 269 stress 0.07160267
## ... Procrustes: rmse 7.817916e-05 max resid 0.000188613
## ... Similar to previous best
## Run 270 stress 0.07160267
## ... Procrustes: rmse 5.418487e-05 max resid 0.0001266857
## ... Similar to previous best
## Run 271 stress 0.07393039
## Run 272 stress 0.07160271
## ... Procrustes: rmse 0.0001318307 max resid 0.0003100539
## ... Similar to previous best
## Run 273 stress 0.07176082
## ... Procrustes: rmse 0.01170423 max resid 0.03158645
## Run 274 stress 0.07160267
## ... Procrustes: rmse 8.61156e-05 max resid 0.0002014406
## ... Similar to previous best
## Run 275 stress 0.07160269
## ... Procrustes: rmse 0.0001106186 max resid 0.0002656291
## ... Similar to previous best
## Run 276 stress 0.07160266
## ... Procrustes: rmse 6.344167e-05 max resid 0.0001344793
## ... Similar to previous best
## Run 277 stress 0.08301729
## Run 278 stress 0.07176076
## ... Procrustes: rmse 0.01168564 max resid 0.03167069
## Run 279 stress 0.08301707
## Run 280 stress 0.0716027
## ... Procrustes: rmse 0.000119408 max resid 0.000289761
## ... Similar to previous best
## Run 281 stress 0.07160267
## ... Procrustes: rmse 8.123445e-05 max resid 0.0001914509
## ... Similar to previous best
## Run 282 stress 0.07393039
## Run 283 stress 0.07393039
## Run 284 stress 0.07176076
## ... Procrustes: rmse 0.01168577 max resid 0.03167431
## Run 285 stress 0.07393039
## Run 286 stress 0.07160265
## ... Procrustes: rmse 3.705481e-05 max resid 8.350041e-05
## ... Similar to previous best
## Run 287 stress 0.07393039
## Run 288 stress 0.07160272
## ... Procrustes: rmse 0.0001476709 max resid 0.0003531494
## ... Similar to previous best
## Run 289 stress 0.07160267
## ... Procrustes: rmse 6.369206e-05 max resid 0.000154422
## ... Similar to previous best
## Run 290 stress 0.07393039
## Run 291 stress 0.07176075
## ... Procrustes: rmse 0.01169504 max resid 0.03162735
## Run 292 stress 0.07393041
## Run 293 stress 0.07393039
## Run 294 stress 0.07160276
## ... Procrustes: rmse 0.0001781728 max resid 0.0004270027
## ... Similar to previous best
## Run 295 stress 0.0739304
## Run 296 stress 0.0739304
## Run 297 stress 0.07160277
## ... Procrustes: rmse 0.0001668936 max resid 0.0003821231
## ... Similar to previous best
## Run 298 stress 0.07160265
## ... Procrustes: rmse 1.359464e-05 max resid 3.357983e-05
## ... Similar to previous best
## Run 299 stress 0.07176078
## ... Procrustes: rmse 0.01169999 max resid 0.03161025
## Run 300 stress 0.07160266
## ... Procrustes: rmse 6.067416e-05 max resid 0.0001415542
## ... Similar to previous best
## Run 301 stress 0.07393039
## Run 302 stress 0.07393041
## Run 303 stress 0.07160274
## ... Procrustes: rmse 0.000144512 max resid 0.0003486494
## ... Similar to previous best
## Run 304 stress 0.07393039
## Run 305 stress 0.07160266
## ... Procrustes: rmse 5.299918e-05 max resid 0.0001268803
## ... Similar to previous best
## Run 306 stress 0.0739304
## Run 307 stress 0.07176074
## ... Procrustes: rmse 0.01169154 max resid 0.03164387
## Run 308 stress 0.07160265
## ... Procrustes: rmse 1.041348e-05 max resid 2.590466e-05
## ... Similar to previous best
## Run 309 stress 0.07160265
## ... Procrustes: rmse 1.237056e-05 max resid 3.071901e-05
## ... Similar to previous best
## Run 310 stress 0.07160266
## ... Procrustes: rmse 7.215505e-05 max resid 0.000172874
## ... Similar to previous best
## Run 311 stress 0.07393039
## Run 312 stress 0.07160274
## ... Procrustes: rmse 0.0001541346 max resid 0.0003619438
## ... Similar to previous best
## Run 313 stress 0.07176075
## ... Procrustes: rmse 0.0116931 max resid 0.03163564
## Run 314 stress 0.07160268
## ... Procrustes: rmse 8.212623e-05 max resid 0.0001931986
## ... Similar to previous best
## Run 315 stress 0.2836568
## Run 316 stress 0.0739304
## Run 317 stress 0.07160268
## ... Procrustes: rmse 0.0001006972 max resid 0.0002406288
## ... Similar to previous best
## Run 318 stress 0.07393039
## Run 319 stress 0.07393038
## Run 320 stress 0.07393043
## Run 321 stress 0.07160272
## ... Procrustes: rmse 0.0001260401 max resid 0.0002920433
## ... Similar to previous best
## Run 322 stress 0.07176077
## ... Procrustes: rmse 0.01169925 max resid 0.03161328
## Run 323 stress 0.07160267
## ... Procrustes: rmse 8.503914e-05 max resid 0.0002053948
## ... Similar to previous best
## Run 324 stress 0.07176075
## ... Procrustes: rmse 0.01169118 max resid 0.0316531
## Run 325 stress 0.07393039
## Run 326 stress 0.07176076
## ... Procrustes: rmse 0.01169549 max resid 0.03161336
## Run 327 stress 0.07393039
## Run 328 stress 0.07160265
## ... Procrustes: rmse 2.603553e-05 max resid 5.818371e-05
## ... Similar to previous best
## Run 329 stress 0.07160267
## ... Procrustes: rmse 3.808945e-05 max resid 8.651016e-05
## ... Similar to previous best
## Run 330 stress 0.0716027
## ... Procrustes: rmse 0.000121886 max resid 0.0002920764
## ... Similar to previous best
## Run 331 stress 0.07393039
## Run 332 stress 0.07393039
## Run 333 stress 0.07176076
## ... Procrustes: rmse 0.01168424 max resid 0.03167241
## Run 334 stress 0.07393039
## Run 335 stress 0.07160268
## ... Procrustes: rmse 6.352984e-05 max resid 0.0001412564
## ... Similar to previous best
## Run 336 stress 0.07160265
## ... Procrustes: rmse 1.999729e-05 max resid 4.793321e-05
## ... Similar to previous best
## Run 337 stress 0.07393041
## Run 338 stress 0.0739304
## Run 339 stress 0.07393039
## Run 340 stress 0.07160271
## ... Procrustes: rmse 0.0001059764 max resid 0.0002415449
## ... Similar to previous best
## Run 341 stress 0.07176076
## ... Procrustes: rmse 0.01168585 max resid 0.03167653
## Run 342 stress 0.07176076
## ... Procrustes: rmse 0.011698 max resid 0.03161925
## Run 343 stress 0.07393039
## Run 344 stress 0.07393038
## Run 345 stress 0.07160267
## ... Procrustes: rmse 9.057072e-05 max resid 0.0002170337
## ... Similar to previous best
## Run 346 stress 0.07393039
## Run 347 stress 0.07393039
## Run 348 stress 0.07160265
## ... Procrustes: rmse 4.148295e-05 max resid 0.0001006259
## ... Similar to previous best
## Run 349 stress 0.07176078
## ... Procrustes: rmse 0.01170118 max resid 0.03160497
## Run 350 stress 0.07393039
## Run 351 stress 0.07160269
## ... Procrustes: rmse 0.0001068525 max resid 0.0002538978
## ... Similar to previous best
## Run 352 stress 0.08301708
## Run 353 stress 0.07176075
## ... Procrustes: rmse 0.01169833 max resid 0.03162573
## Run 354 stress 0.07160265
## ... Procrustes: rmse 4.312583e-05 max resid 9.822838e-05
## ... Similar to previous best
## Run 355 stress 0.07176076
## ... Procrustes: rmse 0.01168982 max resid 0.03164871
## Run 356 stress 0.07393043
## Run 357 stress 0.07160265
## ... Procrustes: rmse 1.234653e-05 max resid 2.533868e-05
## ... Similar to previous best
## Run 358 stress 0.07176078
## ... Procrustes: rmse 0.01170079 max resid 0.03160638
## Run 359 stress 0.07176084
## ... Procrustes: rmse 0.01167652 max resid 0.03171693
## Run 360 stress 0.07393039
## Run 361 stress 0.0830172
## Run 362 stress 0.07160265
## ... Procrustes: rmse 1.406332e-05 max resid 3.564954e-05
## ... Similar to previous best
## Run 363 stress 0.07176078
## ... Procrustes: rmse 0.01169954 max resid 0.03160635
## Run 364 stress 0.07160269
## ... Procrustes: rmse 0.0001062124 max resid 0.0002549635
## ... Similar to previous best
## Run 365 stress 0.07176075
## ... Procrustes: rmse 0.01169679 max resid 0.03162555
## Run 366 stress 0.07160265
## ... Procrustes: rmse 2.323365e-05 max resid 5.115137e-05
## ... Similar to previous best
## Run 367 stress 0.07393039
## Run 368 stress 0.07160265
## ... Procrustes: rmse 2.758179e-05 max resid 5.313371e-05
## ... Similar to previous best
## Run 369 stress 0.07160279
## ... Procrustes: rmse 0.0002028691 max resid 0.0004857328
## ... Similar to previous best
## Run 370 stress 0.07160266
## ... Procrustes: rmse 6.679579e-05 max resid 0.000159827
## ... Similar to previous best
## Run 371 stress 0.07393039
## Run 372 stress 0.0739304
## Run 373 stress 0.07160273
## ... Procrustes: rmse 0.0001235399 max resid 0.000292988
## ... Similar to previous best
## Run 374 stress 0.07393042
## Run 375 stress 0.0739304
## Run 376 stress 0.07160265
## ... Procrustes: rmse 1.002629e-05 max resid 2.534257e-05
## ... Similar to previous best
## Run 377 stress 0.07160265
## ... Procrustes: rmse 2.522499e-05 max resid 5.89477e-05
## ... Similar to previous best
## Run 378 stress 0.07176085
## ... Procrustes: rmse 0.01170663 max resid 0.03157305
## Run 379 stress 0.07393038
## Run 380 stress 0.07176078
## ... Procrustes: rmse 0.01168175 max resid 0.03168955
## Run 381 stress 0.07160265
## ... Procrustes: rmse 4.04705e-05 max resid 9.290628e-05
## ... Similar to previous best
## Run 382 stress 0.07393039
## Run 383 stress 0.07160266
## ... Procrustes: rmse 6.375144e-05 max resid 0.0001484358
## ... Similar to previous best
## Run 384 stress 0.07176075
## ... Procrustes: rmse 0.0116936 max resid 0.0316379
## Run 385 stress 0.07393039
## Run 386 stress 0.07160266
## ... Procrustes: rmse 6.46173e-05 max resid 0.0001542888
## ... Similar to previous best
## Run 387 stress 0.07160265
## ... Procrustes: rmse 4.257604e-05 max resid 0.0001019448
## ... Similar to previous best
## Run 388 stress 0.08301712
## Run 389 stress 0.07160266
## ... Procrustes: rmse 3.66681e-05 max resid 8.309405e-05
## ... Similar to previous best
## Run 390 stress 0.07160265
## ... Procrustes: rmse 9.151617e-06 max resid 2.213402e-05
## ... Similar to previous best
## Run 391 stress 0.07393038
## Run 392 stress 0.07393039
## Run 393 stress 0.08301711
## Run 394 stress 0.07393039
## Run 395 stress 0.07160265
## ... New best solution
## ... Procrustes: rmse 4.213234e-06 max resid 9.371887e-06
## ... Similar to previous best
## Run 396 stress 0.07393039
## Run 397 stress 0.07160265
## ... Procrustes: rmse 2.664635e-05 max resid 6.399464e-05
## ... Similar to previous best
## Run 398 stress 0.07160265
## ... Procrustes: rmse 4.032816e-05 max resid 9.618113e-05
## ... Similar to previous best
## Run 399 stress 0.07160266
## ... Procrustes: rmse 1.800675e-05 max resid 3.112381e-05
## ... Similar to previous best
## Run 400 stress 0.07176076
## ... Procrustes: rmse 0.01169688 max resid 0.03160804
## Run 401 stress 0.07393039
## Run 402 stress 0.07160266
## ... Procrustes: rmse 6.760711e-05 max resid 0.0001535445
## ... Similar to previous best
## Run 403 stress 0.07176075
## ... Procrustes: rmse 0.01168677 max resid 0.03165372
## Run 404 stress 0.07393039
## Run 405 stress 0.07176082
## ... Procrustes: rmse 0.01167599 max resid 0.03170565
## Run 406 stress 0.07160267
## ... Procrustes: rmse 7.717793e-05 max resid 0.0001819043
## ... Similar to previous best
## Run 407 stress 0.07160266
## ... Procrustes: rmse 4.857014e-05 max resid 0.0001139877
## ... Similar to previous best
## Run 408 stress 0.07160273
## ... Procrustes: rmse 0.000152721 max resid 0.0003613956
## ... Similar to previous best
## Run 409 stress 0.07176075
## ... Procrustes: rmse 0.01169374 max resid 0.03162158
## Run 410 stress 0.07160265
## ... Procrustes: rmse 3.353481e-05 max resid 7.981185e-05
## ... Similar to previous best
## Run 411 stress 0.07160265
## ... Procrustes: rmse 4.183819e-05 max resid 9.356302e-05
## ... Similar to previous best
## Run 412 stress 0.07160267
## ... Procrustes: rmse 7.980532e-05 max resid 0.0001854679
## ... Similar to previous best
## Run 413 stress 0.0716027
## ... Procrustes: rmse 9.9921e-05 max resid 0.0002319291
## ... Similar to previous best
## Run 414 stress 0.07393039
## Run 415 stress 0.07393039
## Run 416 stress 0.07393039
## Run 417 stress 0.07393039
## Run 418 stress 0.07176075
## ... Procrustes: rmse 0.01168542 max resid 0.03164128
## Run 419 stress 0.07393039
## Run 420 stress 0.07393039
## Run 421 stress 0.07393038
## Run 422 stress 0.07160266
## ... Procrustes: rmse 1.242734e-05 max resid 2.539914e-05
## ... Similar to previous best
## Run 423 stress 0.07393039
## Run 424 stress 0.07393039
## Run 425 stress 0.08301716
## Run 426 stress 0.07393041
## Run 427 stress 0.07393038
## Run 428 stress 0.07176075
## ... Procrustes: rmse 0.01168496 max resid 0.03165762
## Run 429 stress 0.07160266
## ... Procrustes: rmse 5.338398e-05 max resid 0.0001245813
## ... Similar to previous best
## Run 430 stress 0.0739304
## Run 431 stress 0.07160266
## ... Procrustes: rmse 6.007132e-05 max resid 0.0001411722
## ... Similar to previous best
## Run 432 stress 0.07176074
## ... Procrustes: rmse 0.01169049 max resid 0.03163662
## Run 433 stress 0.07160274
## ... Procrustes: rmse 0.0001382404 max resid 0.0003309339
## ... Similar to previous best
## Run 434 stress 0.0739304
## Run 435 stress 0.07393039
## Run 436 stress 0.07160269
## ... Procrustes: rmse 0.0001001862 max resid 0.0002266394
## ... Similar to previous best
## Run 437 stress 0.07160268
## ... Procrustes: rmse 9.920468e-05 max resid 0.0002340457
## ... Similar to previous best
## Run 438 stress 0.07176074
## ... Procrustes: rmse 0.0116873 max resid 0.03163734
## Run 439 stress 0.07160268
## ... Procrustes: rmse 8.532214e-05 max resid 0.0001948804
## ... Similar to previous best
## Run 440 stress 0.07393039
## Run 441 stress 0.07393039
## Run 442 stress 0.07160265
## ... Procrustes: rmse 1.911395e-05 max resid 4.466838e-05
## ... Similar to previous best
## Run 443 stress 0.07176078
## ... Procrustes: rmse 0.01168057 max resid 0.03168366
## Run 444 stress 0.0830171
## Run 445 stress 0.07160265
## ... Procrustes: rmse 1.318534e-05 max resid 2.980726e-05
## ... Similar to previous best
## Run 446 stress 0.07393038
## Run 447 stress 0.07176075
## ... Procrustes: rmse 0.01168547 max resid 0.03165225
## Run 448 stress 0.07160265
## ... Procrustes: rmse 2.395998e-05 max resid 5.637104e-05
## ... Similar to previous best
## Run 449 stress 0.08301712
## Run 450 stress 0.07176079
## ... Procrustes: rmse 0.01167891 max resid 0.031688
## Run 451 stress 0.07393039
## Run 452 stress 0.07393039
## Run 453 stress 0.07160265
## ... Procrustes: rmse 4.279763e-05 max resid 0.0001013768
## ... Similar to previous best
## Run 454 stress 0.07160267
## ... Procrustes: rmse 4.284634e-05 max resid 8.890966e-05
## ... Similar to previous best
## Run 455 stress 0.07393039
## Run 456 stress 0.07393039
## Run 457 stress 0.07160265
## ... Procrustes: rmse 3.922074e-05 max resid 9.250508e-05
## ... Similar to previous best
## Run 458 stress 0.0716027
## ... Procrustes: rmse 0.0001240823 max resid 0.0002929073
## ... Similar to previous best
## Run 459 stress 0.07160265
## ... Procrustes: rmse 3.751872e-05 max resid 9.103421e-05
## ... Similar to previous best
## Run 460 stress 0.07176075
## ... Procrustes: rmse 0.01169355 max resid 0.03162227
## Run 461 stress 0.0716027
## ... Procrustes: rmse 0.0001005091 max resid 0.0002287388
## ... Similar to previous best
## Run 462 stress 0.07176077
## ... Procrustes: rmse 0.01170114 max resid 0.03161104
## Run 463 stress 0.07160266
## ... Procrustes: rmse 6.546889e-05 max resid 0.0001530005
## ... Similar to previous best
## Run 464 stress 0.07393044
## Run 465 stress 0.07160275
## ... Procrustes: rmse 0.0001713588 max resid 0.0004068394
## ... Similar to previous best
## Run 466 stress 0.07393039
## Run 467 stress 0.07176079
## ... Procrustes: rmse 0.01167887 max resid 0.0316879
## Run 468 stress 0.07160265
## ... Procrustes: rmse 1.524358e-05 max resid 3.625046e-05
## ... Similar to previous best
## Run 469 stress 0.07160269
## ... Procrustes: rmse 0.0001102651 max resid 0.0002610989
## ... Similar to previous best
## Run 470 stress 0.07393039
## Run 471 stress 0.2850167
## Run 472 stress 0.07160274
## ... Procrustes: rmse 0.0001584783 max resid 0.0003768968
## ... Similar to previous best
## Run 473 stress 0.07393039
## Run 474 stress 0.07160267
## ... Procrustes: rmse 8.705302e-05 max resid 0.0002000483
## ... Similar to previous best
## Run 475 stress 0.07393039
## Run 476 stress 0.07176074
## ... Procrustes: rmse 0.01168824 max resid 0.03164733
## Run 477 stress 0.08301722
## Run 478 stress 0.0739304
## Run 479 stress 0.0716027
## ... Procrustes: rmse 0.0001156114 max resid 0.0002720852
## ... Similar to previous best
## Run 480 stress 0.07393039
## Run 481 stress 0.07393038
## Run 482 stress 0.07160267
## ... Procrustes: rmse 7.843495e-05 max resid 0.0001839565
## ... Similar to previous best
## Run 483 stress 0.07160273
## ... Procrustes: rmse 0.000145645 max resid 0.0003383665
## ... Similar to previous best
## Run 484 stress 0.0739304
## Run 485 stress 0.07160269
## ... Procrustes: rmse 9.673296e-05 max resid 0.0002303918
## ... Similar to previous best
## Run 486 stress 0.08301709
## Run 487 stress 0.07176076
## ... Procrustes: rmse 0.01169745 max resid 0.03161311
## Run 488 stress 0.07176078
## ... Procrustes: rmse 0.01169942 max resid 0.03159948
## Run 489 stress 0.2891852
## Run 490 stress 0.07176075
## ... Procrustes: rmse 0.01168737 max resid 0.03165538
## Run 491 stress 0.07393041
## Run 492 stress 0.07393042
## Run 493 stress 0.07160276
## ... Procrustes: rmse 0.0001786477 max resid 0.0004252466
## ... Similar to previous best
## Run 494 stress 0.07160272
## ... Procrustes: rmse 0.0001442652 max resid 0.0003442261
## ... Similar to previous best
## Run 495 stress 0.07393039
## Run 496 stress 0.07160274
## ... Procrustes: rmse 0.0001589061 max resid 0.0003764392
## ... Similar to previous best
## Run 497 stress 0.07160265
## ... Procrustes: rmse 2.063884e-05 max resid 4.443058e-05
## ... Similar to previous best
## Run 498 stress 0.07176084
## ... Procrustes: rmse 0.01170345 max resid 0.03157463
## Run 499 stress 0.07160265
## ... Procrustes: rmse 2.551855e-05 max resid 6.084865e-05
## ... Similar to previous best
## Run 500 stress 0.0739304
## *** Best solution repeated 43 times# Stratified lakes and ocean sites
jpresso_NMDS <- metaMDS(jpresso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08013059
## Run 1 stress 0.08028807
## ... Procrustes: rmse 0.1216285 max resid 0.2678846
## Run 2 stress 0.07081971
## ... New best solution
## ... Procrustes: rmse 0.1001676 max resid 0.2610658
## Run 3 stress 0.08433843
## Run 4 stress 0.07263935
## Run 5 stress 0.08028806
## Run 6 stress 0.08013059
## Run 7 stress 0.07063383
## ... New best solution
## ... Procrustes: rmse 0.01443576 max resid 0.03159548
## Run 8 stress 0.07081969
## ... Procrustes: rmse 0.0144179 max resid 0.03131807
## Run 9 stress 0.07081962
## ... Procrustes: rmse 0.0143127 max resid 0.03120675
## Run 10 stress 0.08199754
## Run 11 stress 0.08013059
## Run 12 stress 0.08679567
## Run 13 stress 0.08433841
## Run 14 stress 0.08679564
## Run 15 stress 0.07263931
## Run 16 stress 0.08013059
## Run 17 stress 0.08028807
## Run 18 stress 0.08013059
## Run 19 stress 0.09109119
## Run 20 stress 0.08028806
## Run 21 stress 0.08199753
## Run 22 stress 0.08013059
## Run 23 stress 0.07081966
## ... Procrustes: rmse 0.01426384 max resid 0.03115427
## Run 24 stress 0.08679567
## Run 25 stress 0.08013059
## Run 26 stress 0.07263931
## Run 27 stress 0.08199752
## Run 28 stress 0.08433838
## Run 29 stress 0.08028806
## Run 30 stress 0.0726393
## Run 31 stress 0.08013062
## Run 32 stress 0.07081962
## ... Procrustes: rmse 0.01431307 max resid 0.03120972
## Run 33 stress 0.08199752
## Run 34 stress 0.08679566
## Run 35 stress 0.09109113
## Run 36 stress 0.07063382
## ... New best solution
## ... Procrustes: rmse 2.318977e-05 max resid 6.328976e-05
## ... Similar to previous best
## Run 37 stress 0.09576455
## Run 38 stress 0.08679567
## Run 39 stress 0.07081964
## ... Procrustes: rmse 0.0142692 max resid 0.0311568
## Run 40 stress 0.08013059
## Run 41 stress 0.07263931
## Run 42 stress 0.08013059
## Run 43 stress 0.07081969
## ... Procrustes: rmse 0.01423113 max resid 0.03111497
## Run 44 stress 0.08028807
## Run 45 stress 0.08679565
## Run 46 stress 0.07081965
## ... Procrustes: rmse 0.01438359 max resid 0.03127992
## Run 47 stress 0.08199752
## Run 48 stress 0.09109115
## Run 49 stress 0.08199752
## Run 50 stress 0.08433838
## Run 51 stress 0.08679564
## Run 52 stress 0.08199752
## Run 53 stress 0.07263932
## Run 54 stress 0.08433843
## Run 55 stress 0.07081966
## ... Procrustes: rmse 0.01424951 max resid 0.03113409
## Run 56 stress 0.07063384
## ... Procrustes: rmse 4.210222e-05 max resid 0.0001148369
## ... Similar to previous best
## Run 57 stress 0.07263931
## Run 58 stress 0.08028806
## Run 59 stress 0.07063391
## ... Procrustes: rmse 3.807215e-05 max resid 0.0001089132
## ... Similar to previous best
## Run 60 stress 0.07263929
## Run 61 stress 0.07063384
## ... Procrustes: rmse 2.744859e-05 max resid 7.461871e-05
## ... Similar to previous best
## Run 62 stress 0.07063393
## ... Procrustes: rmse 0.000257402 max resid 0.0007037748
## ... Similar to previous best
## Run 63 stress 0.07081963
## ... Procrustes: rmse 0.01427655 max resid 0.0311619
## Run 64 stress 0.0726393
## Run 65 stress 0.08679564
## Run 66 stress 0.09109113
## Run 67 stress 0.08013059
## Run 68 stress 0.08679566
## Run 69 stress 0.09109113
## Run 70 stress 0.08028807
## Run 71 stress 0.07263929
## Run 72 stress 0.07081962
## ... Procrustes: rmse 0.01428206 max resid 0.03117121
## Run 73 stress 0.08679564
## Run 74 stress 0.07063394
## ... Procrustes: rmse 0.0001359501 max resid 0.0003751992
## ... Similar to previous best
## Run 75 stress 0.07263929
## Run 76 stress 0.08028807
## Run 77 stress 0.07081967
## ... Procrustes: rmse 0.01424623 max resid 0.03113205
## Run 78 stress 0.08433842
## Run 79 stress 0.08679564
## Run 80 stress 0.08013059
## Run 81 stress 0.08028808
## Run 82 stress 0.08028806
## Run 83 stress 0.07263933
## Run 84 stress 0.08679564
## Run 85 stress 0.07081967
## ... Procrustes: rmse 0.01434797 max resid 0.03124707
## Run 86 stress 0.08679564
## Run 87 stress 0.08028807
## Run 88 stress 0.0910912
## Run 89 stress 0.08028806
## Run 90 stress 0.08013059
## Run 91 stress 0.08679567
## Run 92 stress 0.08013061
## Run 93 stress 0.09241952
## Run 94 stress 0.0726393
## Run 95 stress 0.08199752
## Run 96 stress 0.07063387
## ... Procrustes: rmse 0.0002045743 max resid 0.000560473
## ... Similar to previous best
## Run 97 stress 0.0726393
## Run 98 stress 0.08679564
## Run 99 stress 0.07081967
## ... Procrustes: rmse 0.0143923 max resid 0.03128843
## Run 100 stress 0.07081977
## ... Procrustes: rmse 0.01420212 max resid 0.03108497
## Run 101 stress 0.08028806
## Run 102 stress 0.08013059
## Run 103 stress 0.09109113
## Run 104 stress 0.07263931
## Run 105 stress 0.08028806
## Run 106 stress 0.0726393
## Run 107 stress 0.08028807
## Run 108 stress 0.07081963
## ... Procrustes: rmse 0.01436952 max resid 0.03126489
## Run 109 stress 0.09109117
## Run 110 stress 0.07081968
## ... Procrustes: rmse 0.01424317 max resid 0.03112682
## Run 111 stress 0.07063386
## ... Procrustes: rmse 0.0001697422 max resid 0.0004616871
## ... Similar to previous best
## Run 112 stress 0.0706339
## ... Procrustes: rmse 0.000229468 max resid 0.0006295248
## ... Similar to previous best
## Run 113 stress 0.08199752
## Run 114 stress 0.08013059
## Run 115 stress 0.09576455
## Run 116 stress 0.08679566
## Run 117 stress 0.07263929
## Run 118 stress 0.08028808
## Run 119 stress 0.07081973
## ... Procrustes: rmse 0.01421667 max resid 0.03109745
## Run 120 stress 0.07263931
## Run 121 stress 0.07263931
## Run 122 stress 0.07063381
## ... New best solution
## ... Procrustes: rmse 7.491991e-05 max resid 0.0002060166
## ... Similar to previous best
## Run 123 stress 0.07081963
## ... Procrustes: rmse 0.01432281 max resid 0.03120457
## Run 124 stress 0.0726393
## Run 125 stress 0.08013059
## Run 126 stress 0.08433841
## Run 127 stress 0.08199752
## Run 128 stress 0.07081971
## ... Procrustes: rmse 0.01417925 max resid 0.03104776
## Run 129 stress 0.07081962
## ... Procrustes: rmse 0.01424351 max resid 0.03111737
## Run 130 stress 0.08679565
## Run 131 stress 0.07263929
## Run 132 stress 0.08199753
## Run 133 stress 0.08679564
## Run 134 stress 0.07063381
## ... Procrustes: rmse 8.293638e-06 max resid 2.018006e-05
## ... Similar to previous best
## Run 135 stress 0.07081962
## ... Procrustes: rmse 0.01430539 max resid 0.03118485
## Run 136 stress 0.08679564
## Run 137 stress 0.08028806
## Run 138 stress 0.08679568
## Run 139 stress 0.07081964
## ... Procrustes: rmse 0.0142234 max resid 0.03109691
## Run 140 stress 0.08679564
## Run 141 stress 0.08028807
## Run 142 stress 0.09109114
## Run 143 stress 0.08679566
## Run 144 stress 0.08028807
## Run 145 stress 0.07063387
## ... Procrustes: rmse 0.0001234836 max resid 0.0003358288
## ... Similar to previous best
## Run 146 stress 0.08679565
## Run 147 stress 0.07263929
## Run 148 stress 0.07081975
## ... Procrustes: rmse 0.01416247 max resid 0.03102757
## Run 149 stress 0.08028806
## Run 150 stress 0.08013059
## Run 151 stress 0.07263929
## Run 152 stress 0.08028806
## Run 153 stress 0.0867957
## Run 154 stress 0.08028807
## Run 155 stress 0.08013059
## Run 156 stress 0.0843384
## Run 157 stress 0.07263929
## Run 158 stress 0.08028807
## Run 159 stress 0.08199753
## Run 160 stress 0.08433841
## Run 161 stress 0.08433841
## Run 162 stress 0.0708198
## ... Procrustes: rmse 0.01415669 max resid 0.03102616
## Run 163 stress 0.07063384
## ... Procrustes: rmse 4.61451e-05 max resid 0.0001282268
## ... Similar to previous best
## Run 164 stress 0.08028807
## Run 165 stress 0.07063386
## ... Procrustes: rmse 0.0001119732 max resid 0.0003062556
## ... Similar to previous best
## Run 166 stress 0.08013059
## Run 167 stress 0.08199752
## Run 168 stress 0.08028807
## Run 169 stress 0.08028807
## Run 170 stress 0.07263931
## Run 171 stress 0.07081964
## ... Procrustes: rmse 0.01432929 max resid 0.03121159
## Run 172 stress 0.07263931
## Run 173 stress 0.08028806
## Run 174 stress 0.0708197
## ... Procrustes: rmse 0.01437033 max resid 0.03125562
## Run 175 stress 0.07063382
## ... Procrustes: rmse 5.194083e-05 max resid 0.0001437884
## ... Similar to previous best
## Run 176 stress 0.07081978
## ... Procrustes: rmse 0.01415582 max resid 0.03101882
## Run 177 stress 0.07081972
## ... Procrustes: rmse 0.01437865 max resid 0.03126263
## Run 178 stress 0.07263931
## Run 179 stress 0.07263929
## Run 180 stress 0.07263929
## Run 181 stress 0.0726393
## Run 182 stress 0.0726393
## Run 183 stress 0.07263929
## Run 184 stress 0.07081965
## ... Procrustes: rmse 0.01421543 max resid 0.03108858
## Run 185 stress 0.08028807
## Run 186 stress 0.08679564
## Run 187 stress 0.08433841
## Run 188 stress 0.08199752
## Run 189 stress 0.08028807
## Run 190 stress 0.07263932
## Run 191 stress 0.08199754
## Run 192 stress 0.08433847
## Run 193 stress 0.08199752
## Run 194 stress 0.09109121
## Run 195 stress 0.08199754
## Run 196 stress 0.08679567
## Run 197 stress 0.08433838
## Run 198 stress 0.08199752
## Run 199 stress 0.07081977
## ... Procrustes: rmse 0.014362 max resid 0.0312397
## Run 200 stress 0.08679564
## Run 201 stress 0.07263931
## Run 202 stress 0.07063382
## ... Procrustes: rmse 1.565205e-05 max resid 4.082808e-05
## ... Similar to previous best
## Run 203 stress 0.08028807
## Run 204 stress 0.0706339
## ... Procrustes: rmse 0.0001589728 max resid 0.0004340755
## ... Similar to previous best
## Run 205 stress 0.09242
## Run 206 stress 0.0726393
## Run 207 stress 0.08199752
## Run 208 stress 0.07063388
## ... Procrustes: rmse 9.225283e-05 max resid 0.000260233
## ... Similar to previous best
## Run 209 stress 0.0726393
## Run 210 stress 0.08028807
## Run 211 stress 0.09109113
## Run 212 stress 0.08013059
## Run 213 stress 0.08028807
## Run 214 stress 0.08013059
## Run 215 stress 0.08199753
## Run 216 stress 0.08028806
## Run 217 stress 0.08679564
## Run 218 stress 0.07063381
## ... Procrustes: rmse 1.905988e-05 max resid 4.240456e-05
## ... Similar to previous best
## Run 219 stress 0.08433842
## Run 220 stress 0.0706339
## ... Procrustes: rmse 0.000137526 max resid 0.0003791538
## ... Similar to previous best
## Run 221 stress 0.07081973
## ... Procrustes: rmse 0.01417386 max resid 0.03103612
## Run 222 stress 0.07081972
## ... Procrustes: rmse 0.0141959 max resid 0.03106134
## Run 223 stress 0.08028806
## Run 224 stress 0.08028806
## Run 225 stress 0.08013059
## Run 226 stress 0.08433851
## Run 227 stress 0.0843384
## Run 228 stress 0.08013059
## Run 229 stress 0.09576463
## Run 230 stress 0.09109113
## Run 231 stress 0.08028806
## Run 232 stress 0.07081968
## ... Procrustes: rmse 0.01435547 max resid 0.03124037
## Run 233 stress 0.07063391
## ... Procrustes: rmse 0.0001631198 max resid 0.0004430532
## ... Similar to previous best
## Run 234 stress 0.07081962
## ... Procrustes: rmse 0.01424779 max resid 0.03112254
## Run 235 stress 0.0726393
## Run 236 stress 0.08028806
## Run 237 stress 0.07081972
## ... Procrustes: rmse 0.01417303 max resid 0.0310397
## Run 238 stress 0.07063381
## ... Procrustes: rmse 3.685894e-05 max resid 0.0001021626
## ... Similar to previous best
## Run 239 stress 0.07081976
## ... Procrustes: rmse 0.01415897 max resid 0.03102542
## Run 240 stress 0.07081968
## ... Procrustes: rmse 0.01419667 max resid 0.03106598
## Run 241 stress 0.08679565
## Run 242 stress 0.08199752
## Run 243 stress 0.08679564
## Run 244 stress 0.07081963
## ... Procrustes: rmse 0.0142373 max resid 0.03111248
## Run 245 stress 0.08679565
## Run 246 stress 0.07063383
## ... Procrustes: rmse 6.054426e-05 max resid 0.0001638785
## ... Similar to previous best
## Run 247 stress 0.07063389
## ... Procrustes: rmse 0.0001481602 max resid 0.0004045704
## ... Similar to previous best
## Run 248 stress 0.07263934
## Run 249 stress 0.07081964
## ... Procrustes: rmse 0.01422054 max resid 0.03109192
## Run 250 stress 0.07063387
## ... Procrustes: rmse 0.0001231391 max resid 0.0003363398
## ... Similar to previous best
## Run 251 stress 0.07263929
## Run 252 stress 0.07081968
## ... Procrustes: rmse 0.01435536 max resid 0.03124041
## Run 253 stress 0.0726393
## Run 254 stress 0.07263929
## Run 255 stress 0.07063385
## ... Procrustes: rmse 0.0001250359 max resid 0.0003427402
## ... Similar to previous best
## Run 256 stress 0.08013059
## Run 257 stress 0.08433839
## Run 258 stress 0.07081975
## ... Procrustes: rmse 0.01416352 max resid 0.03102879
## Run 259 stress 0.08433838
## Run 260 stress 0.08013059
## Run 261 stress 0.0706339
## ... Procrustes: rmse 0.0001544939 max resid 0.0004220551
## ... Similar to previous best
## Run 262 stress 0.08433839
## Run 263 stress 0.07263929
## Run 264 stress 0.07081961
## ... Procrustes: rmse 0.01429716 max resid 0.03117674
## Run 265 stress 0.07081963
## ... Procrustes: rmse 0.01423785 max resid 0.03111301
## Run 266 stress 0.07081966
## ... Procrustes: rmse 0.01420623 max resid 0.03107616
## Run 267 stress 0.07081961
## ... Procrustes: rmse 0.01425147 max resid 0.03112684
## Run 268 stress 0.0843384
## Run 269 stress 0.07263929
## Run 270 stress 0.07063389
## ... Procrustes: rmse 0.0001444612 max resid 0.000393727
## ... Similar to previous best
## Run 271 stress 0.08028809
## Run 272 stress 0.08199755
## Run 273 stress 0.0843384
## Run 274 stress 0.08028806
## Run 275 stress 0.08433839
## Run 276 stress 0.0726393
## Run 277 stress 0.08013059
## Run 278 stress 0.07081971
## ... Procrustes: rmse 0.01437453 max resid 0.03125882
## Run 279 stress 0.07063382
## ... Procrustes: rmse 3.725692e-05 max resid 0.0001003705
## ... Similar to previous best
## Run 280 stress 0.07263929
## Run 281 stress 0.08028807
## Run 282 stress 0.07081967
## ... Procrustes: rmse 0.01419952 max resid 0.03107017
## Run 283 stress 0.07063385
## ... Procrustes: rmse 9.748924e-05 max resid 0.0002654394
## ... Similar to previous best
## Run 284 stress 0.07063393
## ... Procrustes: rmse 0.0001832369 max resid 0.0004992474
## ... Similar to previous best
## Run 285 stress 0.08013059
## Run 286 stress 0.0801306
## Run 287 stress 0.08199752
## Run 288 stress 0.09109114
## Run 289 stress 0.07081977
## ... Procrustes: rmse 0.0143922 max resid 0.03128143
## Run 290 stress 0.0726393
## Run 291 stress 0.08433849
## Run 292 stress 0.09241892
## Run 293 stress 0.08013059
## Run 294 stress 0.0843384
## Run 295 stress 0.08013059
## Run 296 stress 0.08433851
## Run 297 stress 0.09576488
## Run 298 stress 0.08199752
## Run 299 stress 0.09109117
## Run 300 stress 0.07081969
## ... Procrustes: rmse 0.01419183 max resid 0.03106275
## Run 301 stress 0.07063394
## ... Procrustes: rmse 0.0001915591 max resid 0.0005228065
## ... Similar to previous best
## Run 302 stress 0.07263929
## Run 303 stress 0.08199752
## Run 304 stress 0.07263929
## Run 305 stress 0.07063386
## ... Procrustes: rmse 0.0001265361 max resid 0.0003497044
## ... Similar to previous best
## Run 306 stress 0.08028809
## Run 307 stress 0.08199753
## Run 308 stress 0.07063391
## ... Procrustes: rmse 0.0001672684 max resid 0.0004547721
## ... Similar to previous best
## Run 309 stress 0.07063391
## ... Procrustes: rmse 0.0001660329 max resid 0.0004528498
## ... Similar to previous best
## Run 310 stress 0.07063392
## ... Procrustes: rmse 0.0001731746 max resid 0.0004747149
## ... Similar to previous best
## Run 311 stress 0.08028807
## Run 312 stress 0.08028806
## Run 313 stress 0.08013059
## Run 314 stress 0.08679564
## Run 315 stress 0.08199752
## Run 316 stress 0.08679566
## Run 317 stress 0.07263929
## Run 318 stress 0.08199753
## Run 319 stress 0.07263931
## Run 320 stress 0.08433847
## Run 321 stress 0.08679566
## Run 322 stress 0.09590084
## Run 323 stress 0.0726393
## Run 324 stress 0.08028806
## Run 325 stress 0.07263929
## Run 326 stress 0.07263929
## Run 327 stress 0.08199752
## Run 328 stress 0.07263929
## Run 329 stress 0.07081962
## ... Procrustes: rmse 0.01424028 max resid 0.03111447
## Run 330 stress 0.07063387
## ... Procrustes: rmse 0.0001229211 max resid 0.0003330599
## ... Similar to previous best
## Run 331 stress 0.09109115
## Run 332 stress 0.07081962
## ... Procrustes: rmse 0.01431621 max resid 0.03119674
## Run 333 stress 0.08679564
## Run 334 stress 0.09109113
## Run 335 stress 0.08028806
## Run 336 stress 0.07081969
## ... Procrustes: rmse 0.01419127 max resid 0.0310618
## Run 337 stress 0.08028806
## Run 338 stress 0.07081963
## ... Procrustes: rmse 0.01423519 max resid 0.03110864
## Run 339 stress 0.08679564
## Run 340 stress 0.07081965
## ... Procrustes: rmse 0.01421457 max resid 0.03108594
## Run 341 stress 0.07263929
## Run 342 stress 0.07263929
## Run 343 stress 0.07063383
## ... Procrustes: rmse 4.111841e-05 max resid 9.99429e-05
## ... Similar to previous best
## Run 344 stress 0.07081964
## ... Procrustes: rmse 0.01433429 max resid 0.03121663
## Run 345 stress 0.07263929
## Run 346 stress 0.07081964
## ... Procrustes: rmse 0.01422002 max resid 0.03109123
## Run 347 stress 0.08028806
## Run 348 stress 0.0726393
## Run 349 stress 0.08028806
## Run 350 stress 0.08199752
## Run 351 stress 0.09109114
## Run 352 stress 0.08013059
## Run 353 stress 0.07081963
## ... Procrustes: rmse 0.01432109 max resid 0.03120263
## Run 354 stress 0.0706339
## ... Procrustes: rmse 0.0001584617 max resid 0.0004331344
## ... Similar to previous best
## Run 355 stress 0.08028807
## Run 356 stress 0.07263929
## Run 357 stress 0.09109115
## Run 358 stress 0.07263932
## Run 359 stress 0.07081981
## ... Procrustes: rmse 0.01415222 max resid 0.03102117
## Run 360 stress 0.08028807
## Run 361 stress 0.08028808
## Run 362 stress 0.07081964
## ... Procrustes: rmse 0.01422519 max resid 0.03109797
## Run 363 stress 0.09109113
## Run 364 stress 0.07081962
## ... Procrustes: rmse 0.01431309 max resid 0.03119285
## Run 365 stress 0.08028807
## Run 366 stress 0.07063382
## ... Procrustes: rmse 3.922416e-05 max resid 0.000106394
## ... Similar to previous best
## Run 367 stress 0.09590071
## Run 368 stress 0.08199752
## Run 369 stress 0.08679564
## Run 370 stress 0.08199753
## Run 371 stress 0.0801306
## Run 372 stress 0.08679567
## Run 373 stress 0.07081962
## ... Procrustes: rmse 0.01424769 max resid 0.03112282
## Run 374 stress 0.08028806
## Run 375 stress 0.0801306
## Run 376 stress 0.07081966
## ... Procrustes: rmse 0.01434833 max resid 0.03123231
## Run 377 stress 0.08013059
## Run 378 stress 0.08433842
## Run 379 stress 0.08679565
## Run 380 stress 0.07063385
## ... Procrustes: rmse 0.0001029723 max resid 0.0002813082
## ... Similar to previous best
## Run 381 stress 0.07063388
## ... Procrustes: rmse 0.0001601978 max resid 0.000439475
## ... Similar to previous best
## Run 382 stress 0.08433841
## Run 383 stress 0.07081968
## ... Procrustes: rmse 0.01435879 max resid 0.03124303
## Run 384 stress 0.07063389
## ... Procrustes: rmse 0.000150545 max resid 0.0004111405
## ... Similar to previous best
## Run 385 stress 0.09109113
## Run 386 stress 0.07263929
## Run 387 stress 0.08679567
## Run 388 stress 0.07263932
## Run 389 stress 0.07081969
## ... Procrustes: rmse 0.01418944 max resid 0.03105906
## Run 390 stress 0.07081964
## ... Procrustes: rmse 0.01422456 max resid 0.03109868
## Run 391 stress 0.0726393
## Run 392 stress 0.08199752
## Run 393 stress 0.08199752
## Run 394 stress 0.08013062
## Run 395 stress 0.09109113
## Run 396 stress 0.08028808
## Run 397 stress 0.08679565
## Run 398 stress 0.08013059
## Run 399 stress 0.08013062
## Run 400 stress 0.08028806
## Run 401 stress 0.07081962
## ... Procrustes: rmse 0.01428769 max resid 0.03116433
## Run 402 stress 0.07063392
## ... Procrustes: rmse 0.0001975098 max resid 0.0005397572
## ... Similar to previous best
## Run 403 stress 0.09109119
## Run 404 stress 0.07263931
## Run 405 stress 0.08028806
## Run 406 stress 0.08013062
## Run 407 stress 0.07063382
## ... Procrustes: rmse 1.33013e-05 max resid 3.767129e-05
## ... Similar to previous best
## Run 408 stress 0.0726393
## Run 409 stress 0.08013059
## Run 410 stress 0.08013059
## Run 411 stress 0.07063391
## ... Procrustes: rmse 0.0001588287 max resid 0.0004357718
## ... Similar to previous best
## Run 412 stress 0.08028807
## Run 413 stress 0.08199753
## Run 414 stress 0.07263929
## Run 415 stress 0.08679566
## Run 416 stress 0.08013059
## Run 417 stress 0.07063381
## ... New best solution
## ... Procrustes: rmse 2.659776e-05 max resid 7.390187e-05
## ... Similar to previous best
## Run 418 stress 0.07081966
## ... Procrustes: rmse 0.01422062 max resid 0.03109723
## Run 419 stress 0.08028806
## Run 420 stress 0.0867957
## Run 421 stress 0.08433839
## Run 422 stress 0.09109117
## Run 423 stress 0.08199753
## Run 424 stress 0.0726393
## Run 425 stress 0.07063392
## ... Procrustes: rmse 0.0002001956 max resid 0.0005491038
## ... Similar to previous best
## Run 426 stress 0.07081967
## ... Procrustes: rmse 0.01437028 max resid 0.03125975
## Run 427 stress 0.09109113
## Run 428 stress 0.08679565
## Run 429 stress 0.07081974
## ... Procrustes: rmse 0.01440516 max resid 0.03129647
## Run 430 stress 0.08028809
## Run 431 stress 0.07081965
## ... Procrustes: rmse 0.01435578 max resid 0.03124286
## Run 432 stress 0.07081964
## ... Procrustes: rmse 0.01434256 max resid 0.03123018
## Run 433 stress 0.07081971
## ... Procrustes: rmse 0.01419422 max resid 0.0310665
## Run 434 stress 0.08028806
## Run 435 stress 0.07081962
## ... Procrustes: rmse 0.01425882 max resid 0.03113845
## Run 436 stress 0.09109117
## Run 437 stress 0.09576453
## Run 438 stress 0.08433843
## Run 439 stress 0.08028807
## Run 440 stress 0.09109113
## Run 441 stress 0.0726393
## Run 442 stress 0.08679565
## Run 443 stress 0.08013059
## Run 444 stress 0.07081965
## ... Procrustes: rmse 0.01423693 max resid 0.03111294
## Run 445 stress 0.08679565
## Run 446 stress 0.07063385
## ... Procrustes: rmse 0.0001234666 max resid 0.000336591
## ... Similar to previous best
## Run 447 stress 0.07063389
## ... Procrustes: rmse 0.0001747839 max resid 0.0004764441
## ... Similar to previous best
## Run 448 stress 0.08679565
## Run 449 stress 0.07081964
## ... Procrustes: rmse 0.01423654 max resid 0.03111505
## Run 450 stress 0.08028806
## Run 451 stress 0.07063383
## ... Procrustes: rmse 6.630155e-05 max resid 0.0001815948
## ... Similar to previous best
## Run 452 stress 0.07081969
## ... Procrustes: rmse 0.01438021 max resid 0.03127042
## Run 453 stress 0.08679565
## Run 454 stress 0.08028807
## Run 455 stress 0.08028807
## Run 456 stress 0.08028806
## Run 457 stress 0.09241906
## Run 458 stress 0.0726393
## Run 459 stress 0.08679565
## Run 460 stress 0.09109118
## Run 461 stress 0.0726393
## Run 462 stress 0.08013059
## Run 463 stress 0.08013059
## Run 464 stress 0.07081965
## ... Procrustes: rmse 0.01435009 max resid 0.03123549
## Run 465 stress 0.08013059
## Run 466 stress 0.09109113
## Run 467 stress 0.0726393
## Run 468 stress 0.07263929
## Run 469 stress 0.07081964
## ... Procrustes: rmse 0.0143492 max resid 0.0312364
## Run 470 stress 0.07081968
## ... Procrustes: rmse 0.014213 max resid 0.03108923
## Run 471 stress 0.07081981
## ... Procrustes: rmse 0.01440827 max resid 0.03129392
## Run 472 stress 0.08679568
## Run 473 stress 0.08028807
## Run 474 stress 0.08028807
## Run 475 stress 0.08679564
## Run 476 stress 0.07081976
## ... Procrustes: rmse 0.01417434 max resid 0.03104625
## Run 477 stress 0.07063385
## ... Procrustes: rmse 0.0001246857 max resid 0.0003425226
## ... Similar to previous best
## Run 478 stress 0.08028806
## Run 479 stress 0.07063385
## ... Procrustes: rmse 0.0001328676 max resid 0.0003630609
## ... Similar to previous best
## Run 480 stress 0.07063386
## ... Procrustes: rmse 0.0001036634 max resid 0.000285938
## ... Similar to previous best
## Run 481 stress 0.08013059
## Run 482 stress 0.08028806
## Run 483 stress 0.08199753
## Run 484 stress 0.0843384
## Run 485 stress 0.08028806
## Run 486 stress 0.0726393
## Run 487 stress 0.09109116
## Run 488 stress 0.07263929
## Run 489 stress 0.08013059
## Run 490 stress 0.0726393
## Run 491 stress 0.07081962
## ... Procrustes: rmse 0.01425657 max resid 0.0311346
## Run 492 stress 0.08028807
## Run 493 stress 0.08199752
## Run 494 stress 0.07063389
## ... Procrustes: rmse 0.0001699104 max resid 0.0004658144
## ... Similar to previous best
## Run 495 stress 0.0708197
## ... Procrustes: rmse 0.01438502 max resid 0.03127579
## Run 496 stress 0.08028807
## Run 497 stress 0.08679564
## Run 498 stress 0.07063384
## ... Procrustes: rmse 3.061603e-05 max resid 5.890532e-05
## ... Similar to previous best
## Run 499 stress 0.07081973
## ... Procrustes: rmse 0.01440084 max resid 0.03129044
## Run 500 stress 0.08028806
## *** Best solution repeated 10 times# Stratified lakes
jpress_NMDS <- metaMDS(jpress_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.1410449
## Run 1 stress 0.1407298
## ... New best solution
## ... Procrustes: rmse 0.2343121 max resid 0.3976002
## Run 2 stress 0.1572668
## Run 3 stress 0.1383681
## ... New best solution
## ... Procrustes: rmse 0.2805275 max resid 0.3935151
## Run 4 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 0.1766043 max resid 0.3636667
## Run 5 stress 0.2496381
## Run 6 stress 0.1551863
## Run 7 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 1.212111e-06 max resid 2.451647e-06
## ... Similar to previous best
## Run 8 stress 0.2008162
## Run 9 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 9.645984e-07 max resid 1.755329e-06
## ... Similar to previous best
## Run 10 stress 0.1598154
## Run 11 stress 0.1407209
## Run 12 stress 0.1572668
## Run 13 stress 0.1410448
## Run 14 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 1.690806e-07 max resid 2.307319e-07
## ... Similar to previous best
## Run 15 stress 0.141045
## Run 16 stress 0.1581642
## Run 17 stress 0.1445811
## Run 18 stress 0.1383681
## Run 19 stress 0.1415299
## Run 20 stress 0.284852
## Run 21 stress 0.1796864
## Run 22 stress 0.1415299
## Run 23 stress 0.1551863
## Run 24 stress 0.1415299
## Run 25 stress 0.1320258
## ... Procrustes: rmse 1.494942e-06 max resid 2.949999e-06
## ... Similar to previous best
## Run 26 stress 0.1415299
## Run 27 stress 0.1320258
## ... Procrustes: rmse 1.102812e-06 max resid 2.172594e-06
## ... Similar to previous best
## Run 28 stress 0.1551863
## Run 29 stress 0.1320258
## ... Procrustes: rmse 2.26123e-06 max resid 4.648488e-06
## ... Similar to previous best
## Run 30 stress 0.2422667
## Run 31 stress 0.2373121
## Run 32 stress 0.1572668
## Run 33 stress 0.1551863
## Run 34 stress 0.1320258
## ... Procrustes: rmse 4.93063e-07 max resid 9.694798e-07
## ... Similar to previous best
## Run 35 stress 0.1320258
## ... Procrustes: rmse 3.176985e-06 max resid 6.568006e-06
## ... Similar to previous best
## Run 36 stress 0.1320258
## ... Procrustes: rmse 5.625312e-07 max resid 1.113762e-06
## ... Similar to previous best
## Run 37 stress 0.249638
## Run 38 stress 0.1796864
## Run 39 stress 0.1407298
## Run 40 stress 0.1693717
## Run 41 stress 0.1587623
## Run 42 stress 0.1410452
## Run 43 stress 0.1572668
## Run 44 stress 0.1693717
## Run 45 stress 0.1410448
## Run 46 stress 0.1407298
## Run 47 stress 0.1551863
## Run 48 stress 0.1320258
## ... Procrustes: rmse 1.348874e-06 max resid 2.658946e-06
## ... Similar to previous best
## Run 49 stress 0.1415299
## Run 50 stress 0.1320258
## ... Procrustes: rmse 1.882757e-06 max resid 3.915235e-06
## ... Similar to previous best
## Run 51 stress 0.1320258
## ... Procrustes: rmse 4.898262e-06 max resid 1.0339e-05
## ... Similar to previous best
## Run 52 stress 0.1383681
## Run 53 stress 0.2085297
## Run 54 stress 0.1407298
## Run 55 stress 0.1628606
## Run 56 stress 0.1445811
## Run 57 stress 0.1771966
## Run 58 stress 0.1383681
## Run 59 stress 0.1407298
## Run 60 stress 0.1320258
## ... Procrustes: rmse 1.714694e-06 max resid 2.992819e-06
## ... Similar to previous best
## Run 61 stress 0.1771966
## Run 62 stress 0.1796865
## Run 63 stress 0.1320258
## ... Procrustes: rmse 1.844639e-06 max resid 3.796318e-06
## ... Similar to previous best
## Run 64 stress 0.1962476
## Run 65 stress 0.1383682
## Run 66 stress 0.1693717
## Run 67 stress 0.1415299
## Run 68 stress 0.1572668
## Run 69 stress 0.2848515
## Run 70 stress 0.1407298
## Run 71 stress 0.2550044
## Run 72 stress 0.141045
## Run 73 stress 0.1320258
## ... Procrustes: rmse 1.745568e-06 max resid 3.575095e-06
## ... Similar to previous best
## Run 74 stress 0.1383681
## Run 75 stress 0.1407206
## Run 76 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 1.409864e-06 max resid 2.892145e-06
## ... Similar to previous best
## Run 77 stress 0.1970303
## Run 78 stress 0.1693717
## Run 79 stress 0.2600627
## Run 80 stress 0.1445811
## Run 81 stress 0.1551863
## Run 82 stress 0.1410448
## Run 83 stress 0.1693717
## Run 84 stress 0.2373121
## Run 85 stress 0.1581642
## Run 86 stress 0.2085297
## Run 87 stress 0.1407208
## Run 88 stress 0.1929519
## Run 89 stress 0.1802588
## Run 90 stress 0.1410452
## Run 91 stress 0.1551863
## Run 92 stress 0.1415299
## Run 93 stress 0.1583016
## Run 94 stress 0.1407298
## Run 95 stress 0.1320258
## ... Procrustes: rmse 3.066572e-06 max resid 6.204811e-06
## ... Similar to previous best
## Run 96 stress 0.1771969
## Run 97 stress 0.1581642
## Run 98 stress 0.1320258
## ... Procrustes: rmse 2.210111e-06 max resid 4.602265e-06
## ... Similar to previous best
## Run 99 stress 0.1445811
## Run 100 stress 0.1551863
## Run 101 stress 0.1771966
## Run 102 stress 0.1415299
## Run 103 stress 0.1320258
## ... Procrustes: rmse 6.443352e-07 max resid 1.208888e-06
## ... Similar to previous best
## Run 104 stress 0.2085297
## Run 105 stress 0.1796865
## Run 106 stress 0.1551863
## Run 107 stress 0.1407298
## Run 108 stress 0.1410452
## Run 109 stress 0.1415299
## Run 110 stress 0.1693717
## Run 111 stress 0.1693717
## Run 112 stress 0.1407207
## Run 113 stress 0.1383682
## Run 114 stress 0.1320258
## ... Procrustes: rmse 9.346545e-07 max resid 1.885336e-06
## ... Similar to previous best
## Run 115 stress 0.2015531
## Run 116 stress 0.1383682
## Run 117 stress 0.1383681
## Run 118 stress 0.141045
## Run 119 stress 0.1407298
## Run 120 stress 0.1407298
## Run 121 stress 0.1320258
## ... Procrustes: rmse 3.487731e-06 max resid 7.216815e-06
## ... Similar to previous best
## Run 122 stress 0.1551863
## Run 123 stress 0.1551863
## Run 124 stress 0.2456775
## Run 125 stress 0.2373121
## Run 126 stress 0.1434197
## Run 127 stress 0.1320258
## ... Procrustes: rmse 1.72077e-06 max resid 3.594897e-06
## ... Similar to previous best
## Run 128 stress 0.1410451
## Run 129 stress 0.1587623
## Run 130 stress 0.1771969
## Run 131 stress 0.1551863
## Run 132 stress 0.1551863
## Run 133 stress 0.1320258
## ... Procrustes: rmse 1.537665e-06 max resid 3.085233e-06
## ... Similar to previous best
## Run 134 stress 0.1581642
## Run 135 stress 0.2373121
## Run 136 stress 0.1407298
## Run 137 stress 0.1551863
## Run 138 stress 0.2005461
## Run 139 stress 0.2224298
## Run 140 stress 0.1383681
## Run 141 stress 0.1663544
## Run 142 stress 0.2073091
## Run 143 stress 0.141045
## Run 144 stress 0.2852212
## Run 145 stress 0.2711187
## Run 146 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 3.491454e-07 max resid 6.24115e-07
## ... Similar to previous best
## Run 147 stress 0.2854403
## Run 148 stress 0.1320258
## ... Procrustes: rmse 6.075413e-06 max resid 1.096462e-05
## ... Similar to previous best
## Run 149 stress 0.1407298
## Run 150 stress 0.1383682
## Run 151 stress 0.1410449
## Run 152 stress 0.1407298
## Run 153 stress 0.1320258
## ... Procrustes: rmse 2.860557e-06 max resid 5.887377e-06
## ... Similar to previous best
## Run 154 stress 0.3035573
## Run 155 stress 0.1796865
## Run 156 stress 0.1407207
## Run 157 stress 0.1693717
## Run 158 stress 0.1410449
## Run 159 stress 0.1415299
## Run 160 stress 0.1415299
## Run 161 stress 0.1415299
## Run 162 stress 0.1383681
## Run 163 stress 0.3083098
## Run 164 stress 0.1445811
## Run 165 stress 0.1771969
## Run 166 stress 0.1434197
## Run 167 stress 0.1551863
## Run 168 stress 0.1407298
## Run 169 stress 0.1796865
## Run 170 stress 0.2118437
## Run 171 stress 0.1776793
## Run 172 stress 0.1551863
## Run 173 stress 0.1415299
## Run 174 stress 0.1320258
## ... Procrustes: rmse 1.733241e-06 max resid 3.566185e-06
## ... Similar to previous best
## Run 175 stress 0.1320258
## ... Procrustes: rmse 1.060275e-06 max resid 2.194319e-06
## ... Similar to previous best
## Run 176 stress 0.1693717
## Run 177 stress 0.1320258
## ... Procrustes: rmse 1.861087e-06 max resid 3.781106e-06
## ... Similar to previous best
## Run 178 stress 0.1771969
## Run 179 stress 0.1572668
## Run 180 stress 0.1415299
## Run 181 stress 0.1320258
## ... Procrustes: rmse 8.271655e-07 max resid 1.003771e-06
## ... Similar to previous best
## Run 182 stress 0.1320258
## ... Procrustes: rmse 7.293011e-07 max resid 1.131321e-06
## ... Similar to previous best
## Run 183 stress 0.1320258
## ... Procrustes: rmse 1.009561e-06 max resid 2.069319e-06
## ... Similar to previous best
## Run 184 stress 0.1551863
## Run 185 stress 0.1583016
## Run 186 stress 0.2842805
## Run 187 stress 0.2691259
## Run 188 stress 0.1415299
## Run 189 stress 0.1628606
## Run 190 stress 0.1693717
## Run 191 stress 0.1383681
## Run 192 stress 0.1415299
## Run 193 stress 0.1583016
## Run 194 stress 0.1320258
## ... Procrustes: rmse 2.041785e-06 max resid 4.265685e-06
## ... Similar to previous best
## Run 195 stress 0.1663544
## Run 196 stress 0.1410454
## Run 197 stress 0.1771969
## Run 198 stress 0.1410451
## Run 199 stress 0.1320258
## ... Procrustes: rmse 8.447296e-07 max resid 1.462162e-06
## ... Similar to previous best
## Run 200 stress 0.2224298
## Run 201 stress 0.1434197
## Run 202 stress 0.1415299
## Run 203 stress 0.2015531
## Run 204 stress 0.1383682
## Run 205 stress 0.1410449
## Run 206 stress 0.1628606
## Run 207 stress 0.1415299
## Run 208 stress 0.1693717
## Run 209 stress 0.141045
## Run 210 stress 0.1410455
## Run 211 stress 0.2456775
## Run 212 stress 0.1383682
## Run 213 stress 0.1320258
## ... Procrustes: rmse 1.552691e-06 max resid 3.248409e-06
## ... Similar to previous best
## Run 214 stress 0.1830332
## Run 215 stress 0.1320258
## ... Procrustes: rmse 7.436971e-07 max resid 1.213331e-06
## ... Similar to previous best
## Run 216 stress 0.1407298
## Run 217 stress 0.1628606
## Run 218 stress 0.1572668
## Run 219 stress 0.1572668
## Run 220 stress 0.1445811
## Run 221 stress 0.1383681
## Run 222 stress 0.1693717
## Run 223 stress 0.1383682
## Run 224 stress 0.1415299
## Run 225 stress 0.1320258
## ... Procrustes: rmse 1.975985e-06 max resid 4.055571e-06
## ... Similar to previous best
## Run 226 stress 0.1693717
## Run 227 stress 0.2496389
## Run 228 stress 0.1320258
## ... Procrustes: rmse 1.432509e-06 max resid 3.007556e-06
## ... Similar to previous best
## Run 229 stress 0.1320258
## ... Procrustes: rmse 1.666833e-07 max resid 3.318891e-07
## ... Similar to previous best
## Run 230 stress 0.1771966
## Run 231 stress 0.2422742
## Run 232 stress 0.1434197
## Run 233 stress 0.2385029
## Run 234 stress 0.2842805
## Run 235 stress 0.1551863
## Run 236 stress 0.1551863
## Run 237 stress 0.1415299
## Run 238 stress 0.1383682
## Run 239 stress 0.1410448
## Run 240 stress 0.1776793
## Run 241 stress 0.1970303
## Run 242 stress 0.1320258
## ... Procrustes: rmse 1.538549e-06 max resid 3.190734e-06
## ... Similar to previous best
## Run 243 stress 0.1383682
## Run 244 stress 0.1434197
## Run 245 stress 0.1802587
## Run 246 stress 0.1598154
## Run 247 stress 0.1410448
## Run 248 stress 0.1383682
## Run 249 stress 0.1771969
## Run 250 stress 0.1410449
## Run 251 stress 0.1551863
## Run 252 stress 0.1407298
## Run 253 stress 0.1410453
## Run 254 stress 0.1663544
## Run 255 stress 0.1415299
## Run 256 stress 0.2456775
## Run 257 stress 0.1410452
## Run 258 stress 0.1320258
## ... Procrustes: rmse 1.742441e-06 max resid 3.547865e-06
## ... Similar to previous best
## Run 259 stress 0.1407298
## Run 260 stress 0.1407298
## Run 261 stress 0.1410453
## Run 262 stress 0.1415299
## Run 263 stress 0.1771966
## Run 264 stress 0.1693717
## Run 265 stress 0.2852157
## Run 266 stress 0.1962476
## Run 267 stress 0.2456775
## Run 268 stress 0.1776793
## Run 269 stress 0.2711712
## Run 270 stress 0.141045
## Run 271 stress 0.1383682
## Run 272 stress 0.1551863
## Run 273 stress 0.2074935
## Run 274 stress 0.2775525
## Run 275 stress 0.2015531
## Run 276 stress 0.1410448
## Run 277 stress 0.1434197
## Run 278 stress 0.1929519
## Run 279 stress 0.3006869
## Run 280 stress 0.1583016
## Run 281 stress 0.1383681
## Run 282 stress 0.1415299
## Run 283 stress 0.1830332
## Run 284 stress 0.2562346
## Run 285 stress 0.1551863
## Run 286 stress 0.1830332
## Run 287 stress 0.1998955
## Run 288 stress 0.1583016
## Run 289 stress 0.2951814
## Run 290 stress 0.1572668
## Run 291 stress 0.2005461
## Run 292 stress 0.1415299
## Run 293 stress 0.1581642
## Run 294 stress 0.1415299
## Run 295 stress 0.1693717
## Run 296 stress 0.1434197
## Run 297 stress 0.1445811
## Run 298 stress 0.1320258
## ... Procrustes: rmse 4.190172e-06 max resid 8.791318e-06
## ... Similar to previous best
## Run 299 stress 0.1962476
## Run 300 stress 0.2520602
## Run 301 stress 0.1410451
## Run 302 stress 0.1320258
## ... Procrustes: rmse 1.749634e-06 max resid 3.692617e-06
## ... Similar to previous best
## Run 303 stress 0.1572668
## Run 304 stress 0.1830332
## Run 305 stress 0.2385029
## Run 306 stress 0.2842805
## Run 307 stress 0.1407298
## Run 308 stress 0.1407207
## Run 309 stress 0.1415299
## Run 310 stress 0.1383681
## Run 311 stress 0.1415299
## Run 312 stress 0.1407206
## Run 313 stress 0.1693717
## Run 314 stress 0.2385029
## Run 315 stress 0.1410448
## Run 316 stress 0.1962476
## Run 317 stress 0.1407298
## Run 318 stress 0.1830332
## Run 319 stress 0.1383681
## Run 320 stress 0.1693717
## Run 321 stress 0.1383681
## Run 322 stress 0.1572668
## Run 323 stress 0.2510079
## Run 324 stress 0.1320258
## ... Procrustes: rmse 8.690872e-07 max resid 1.654074e-06
## ... Similar to previous best
## Run 325 stress 0.1802752
## Run 326 stress 0.1830332
## Run 327 stress 0.141045
## Run 328 stress 0.1970303
## Run 329 stress 0.1551863
## Run 330 stress 0.1410448
## Run 331 stress 0.1693717
## Run 332 stress 0.1434197
## Run 333 stress 0.1415299
## Run 334 stress 0.1383681
## Run 335 stress 0.1320258
## ... Procrustes: rmse 1.952088e-06 max resid 3.87212e-06
## ... Similar to previous best
## Run 336 stress 0.1583016
## Run 337 stress 0.1407207
## Run 338 stress 0.1572668
## Run 339 stress 0.1572668
## Run 340 stress 0.1962476
## Run 341 stress 0.1383682
## Run 342 stress 0.1320258
## ... Procrustes: rmse 2.172946e-06 max resid 4.340704e-06
## ... Similar to previous best
## Run 343 stress 0.1410449
## Run 344 stress 0.1628606
## Run 345 stress 0.1410449
## Run 346 stress 0.1410449
## Run 347 stress 0.1410448
## Run 348 stress 0.1802752
## Run 349 stress 0.1320258
## ... Procrustes: rmse 1.020362e-06 max resid 2.013482e-06
## ... Similar to previous best
## Run 350 stress 0.1581642
## Run 351 stress 0.1320258
## ... Procrustes: rmse 1.555022e-06 max resid 3.110007e-06
## ... Similar to previous best
## Run 352 stress 0.2501063
## Run 353 stress 0.1551863
## Run 354 stress 0.1572668
## Run 355 stress 0.1410449
## Run 356 stress 0.1407298
## Run 357 stress 0.1572668
## Run 358 stress 0.1320258
## ... Procrustes: rmse 4.30396e-07 max resid 8.29372e-07
## ... Similar to previous best
## Run 359 stress 0.1320258
## ... Procrustes: rmse 2.659659e-06 max resid 5.453057e-06
## ... Similar to previous best
## Run 360 stress 0.1407208
## Run 361 stress 0.2514078
## Run 362 stress 0.1410452
## Run 363 stress 0.1383681
## Run 364 stress 0.1693717
## Run 365 stress 0.1410448
## Run 366 stress 0.1383681
## Run 367 stress 0.2550047
## Run 368 stress 0.1383682
## Run 369 stress 0.1320258
## ... Procrustes: rmse 1.794825e-06 max resid 3.688082e-06
## ... Similar to previous best
## Run 370 stress 0.1407298
## Run 371 stress 0.1551863
## Run 372 stress 0.2422742
## Run 373 stress 0.1693717
## Run 374 stress 0.1998955
## Run 375 stress 0.1663544
## Run 376 stress 0.1415299
## Run 377 stress 0.1771969
## Run 378 stress 0.3083098
## Run 379 stress 0.2227527
## Run 380 stress 0.1551863
## Run 381 stress 0.1320258
## ... Procrustes: rmse 9.685182e-07 max resid 1.981182e-06
## ... Similar to previous best
## Run 382 stress 0.2775539
## Run 383 stress 0.1320258
## ... Procrustes: rmse 7.005725e-07 max resid 1.383107e-06
## ... Similar to previous best
## Run 384 stress 0.1551863
## Run 385 stress 0.1628606
## Run 386 stress 0.1320258
## ... Procrustes: rmse 6.190038e-07 max resid 9.547497e-07
## ... Similar to previous best
## Run 387 stress 0.1320258
## ... Procrustes: rmse 5.354578e-07 max resid 1.060919e-06
## ... Similar to previous best
## Run 388 stress 0.1802752
## Run 389 stress 0.2562346
## Run 390 stress 0.1320258
## ... Procrustes: rmse 2.914011e-06 max resid 5.999083e-06
## ... Similar to previous best
## Run 391 stress 0.1320258
## ... Procrustes: rmse 2.188709e-06 max resid 4.498843e-06
## ... Similar to previous best
## Run 392 stress 0.1415299
## Run 393 stress 0.1583016
## Run 394 stress 0.1320258
## ... Procrustes: rmse 6.901546e-07 max resid 1.379601e-06
## ... Similar to previous best
## Run 395 stress 0.1320258
## ... Procrustes: rmse 2.477668e-06 max resid 5.099946e-06
## ... Similar to previous best
## Run 396 stress 0.1320258
## ... New best solution
## ... Procrustes: rmse 3.419159e-07 max resid 7.062685e-07
## ... Similar to previous best
## Run 397 stress 0.1383681
## Run 398 stress 0.1572668
## Run 399 stress 0.1771969
## Run 400 stress 0.1776793
## Run 401 stress 0.2562346
## Run 402 stress 0.1407298
## Run 403 stress 0.1628606
## Run 404 stress 0.1410448
## Run 405 stress 0.1320258
## ... Procrustes: rmse 8.336497e-07 max resid 1.339729e-06
## ... Similar to previous best
## Run 406 stress 0.1434197
## Run 407 stress 0.1410449
## Run 408 stress 0.1383681
## Run 409 stress 0.141045
## Run 410 stress 0.1410453
## Run 411 stress 0.1583016
## Run 412 stress 0.1771969
## Run 413 stress 0.2578647
## Run 414 stress 0.1970303
## Run 415 stress 0.1383681
## Run 416 stress 0.1693717
## Run 417 stress 0.1320258
## ... Procrustes: rmse 1.334601e-06 max resid 2.726652e-06
## ... Similar to previous best
## Run 418 stress 0.1410448
## Run 419 stress 0.1383681
## Run 420 stress 0.1383681
## Run 421 stress 0.1415299
## Run 422 stress 0.2385029
## Run 423 stress 0.2578643
## Run 424 stress 0.1962476
## Run 425 stress 0.1410448
## Run 426 stress 0.1320258
## ... Procrustes: rmse 2.624149e-07 max resid 4.70297e-07
## ... Similar to previous best
## Run 427 stress 0.2612821
## Run 428 stress 0.2384387
## Run 429 stress 0.1572668
## Run 430 stress 0.1383681
## Run 431 stress 0.1776793
## Run 432 stress 0.1383681
## Run 433 stress 0.1415299
## Run 434 stress 0.1407298
## Run 435 stress 0.141045
## Run 436 stress 0.1410448
## Run 437 stress 0.2008163
## Run 438 stress 0.1693717
## Run 439 stress 0.1410449
## Run 440 stress 0.1410452
## Run 441 stress 0.1383681
## Run 442 stress 0.1383681
## Run 443 stress 0.1551863
## Run 444 stress 0.1551863
## Run 445 stress 0.2385029
## Run 446 stress 0.1383681
## Run 447 stress 0.1583016
## Run 448 stress 0.1320258
## ... Procrustes: rmse 1.277128e-06 max resid 2.422119e-06
## ... Similar to previous best
## Run 449 stress 0.1962476
## Run 450 stress 0.1407206
## Run 451 stress 0.1771969
## Run 452 stress 0.1320258
## ... Procrustes: rmse 2.0833e-06 max resid 4.385743e-06
## ... Similar to previous best
## Run 453 stress 0.1410453
## Run 454 stress 0.1410451
## Run 455 stress 0.1572668
## Run 456 stress 0.1796865
## Run 457 stress 0.1796864
## Run 458 stress 0.1415299
## Run 459 stress 0.1383682
## Run 460 stress 0.1407208
## Run 461 stress 0.1415299
## Run 462 stress 0.1407298
## Run 463 stress 0.2695314
## Run 464 stress 0.1410449
## Run 465 stress 0.1383681
## Run 466 stress 0.1320258
## ... Procrustes: rmse 1.653391e-06 max resid 3.320569e-06
## ... Similar to previous best
## Run 467 stress 0.1407298
## Run 468 stress 0.1551863
## Run 469 stress 0.2008163
## Run 470 stress 0.1383682
## Run 471 stress 0.1383681
## Run 472 stress 0.1407298
## Run 473 stress 0.1415299
## Run 474 stress 0.1551863
## Run 475 stress 0.141045
## Run 476 stress 0.1383682
## Run 477 stress 0.1693717
## Run 478 stress 0.1796865
## Run 479 stress 0.1551863
## Run 480 stress 0.1415299
## Run 481 stress 0.1410452
## Run 482 stress 0.2842805
## Run 483 stress 0.1320258
## ... Procrustes: rmse 1.902489e-06 max resid 3.932492e-06
## ... Similar to previous best
## Run 484 stress 0.2385029
## Run 485 stress 0.1410448
## Run 486 stress 0.1830332
## Run 487 stress 0.2615852
## Run 488 stress 0.1415299
## Run 489 stress 0.3067624
## Run 490 stress 0.1598154
## Run 491 stress 0.1407207
## Run 492 stress 0.1598154
## Run 493 stress 0.1383681
## Run 494 stress 0.1581642
## Run 495 stress 0.1320258
## ... Procrustes: rmse 1.13266e-06 max resid 2.345678e-06
## ... Similar to previous best
## Run 496 stress 0.1383681
## Run 497 stress 0.2015531
## Run 498 stress 0.1320258
## ... Procrustes: rmse 1.43965e-06 max resid 2.921547e-06
## ... Similar to previous best
## Run 499 stress 0.1320258
## ... Procrustes: rmse 2.710614e-06 max resid 5.592526e-06
## ... Similar to previous best
## Run 500 stress 0.1320258
## ... Procrustes: rmse 2.102021e-06 max resid 4.303612e-06
## ... Similar to previous best
## *** Best solution repeated 12 times## Dice-Sørensen
# All sites
spres_NMDS <- metaMDS(spres_dist, try = 1000, parallel = 4)## Run 0 stress 0.09059979
## Run 1 stress 0.09042048
## ... New best solution
## ... Procrustes: rmse 0.04404963 max resid 0.1176603
## Run 2 stress 0.09634398
## Run 3 stress 0.09229282
## Run 4 stress 0.0902272
## ... New best solution
## ... Procrustes: rmse 0.03702241 max resid 0.1199092
## Run 5 stress 0.09056104
## ... Procrustes: rmse 0.0373467 max resid 0.1197193
## Run 6 stress 0.09042045
## ... Procrustes: rmse 0.03700912 max resid 0.1189916
## Run 7 stress 0.09089992
## Run 8 stress 0.09090427
## Run 9 stress 0.095995
## Run 10 stress 0.1051254
## Run 11 stress 0.08976357
## ... New best solution
## ... Procrustes: rmse 0.01098212 max resid 0.04065768
## Run 12 stress 0.09056096
## Run 13 stress 0.09056095
## Run 14 stress 0.1077495
## Run 15 stress 0.09172719
## Run 16 stress 0.105125
## Run 17 stress 0.09066135
## Run 18 stress 0.09317779
## Run 19 stress 0.1060173
## Run 20 stress 0.09599488
## *** Best solution was not repeated -- monoMDS stopping criteria:
## 20: stress ratio > sratmax# Mixed and stratified lakes
spresms_NMDS <- metaMDS(spresms_dist, try = 1000, parallel = 4)## Run 0 stress 0.08503579
## Run 1 stress 0.09159087
## Run 2 stress 0.09337262
## Run 3 stress 0.09168933
## Run 4 stress 0.09381849
## Run 5 stress 0.09030393
## Run 6 stress 0.09030416
## Run 7 stress 0.09417769
## Run 8 stress 0.08503464
## ... New best solution
## ... Procrustes: rmse 0.001346346 max resid 0.003457318
## ... Similar to previous best
## Run 9 stress 0.085035
## ... Procrustes: rmse 0.0003217801 max resid 0.0006382604
## ... Similar to previous best
## Run 10 stress 0.2547728
## Run 11 stress 0.0997
## Run 12 stress 0.09168949
## Run 13 stress 0.09168958
## Run 14 stress 0.2574363
## Run 15 stress 0.09286086
## Run 16 stress 0.09407999
## Run 17 stress 0.09168947
## Run 18 stress 0.09969978
## Run 19 stress 0.09030399
## Run 20 stress 0.0850347
## ... Procrustes: rmse 9.25553e-05 max resid 0.0001917534
## ... Similar to previous best
## *** Best solution repeated 3 times# Ocean sites and mixed lakes
spresom_NMDS <- metaMDS(spresom_dist, try = 1000, parallel = 4)## Run 0 stress 0.07160265
## Run 1 stress 0.07393039
## Run 2 stress 0.07176077
## ... Procrustes: rmse 0.01169069 max resid 0.03162913
## Run 3 stress 0.07176077
## ... Procrustes: rmse 0.01169892 max resid 0.03161839
## Run 4 stress 0.07393041
## Run 5 stress 0.07160268
## ... Procrustes: rmse 5.355886e-05 max resid 0.0001253463
## ... Similar to previous best
## Run 6 stress 0.07160273
## ... Procrustes: rmse 0.0001192013 max resid 0.0002838091
## ... Similar to previous best
## Run 7 stress 0.2917866
## Run 8 stress 0.07160271
## ... Procrustes: rmse 0.0001094368 max resid 0.0002599732
## ... Similar to previous best
## Run 9 stress 0.07393039
## Run 10 stress 0.07160267
## ... Procrustes: rmse 5.349811e-05 max resid 0.0001252844
## ... Similar to previous best
## Run 11 stress 0.07160265
## ... New best solution
## ... Procrustes: rmse 2.837296e-05 max resid 6.446706e-05
## ... Similar to previous best
## Run 12 stress 0.07160266
## ... Procrustes: rmse 5.171492e-05 max resid 0.0001234575
## ... Similar to previous best
## Run 13 stress 0.07921479
## Run 14 stress 0.07176076
## ... Procrustes: rmse 0.01169529 max resid 0.03161481
## Run 15 stress 0.07393039
## Run 16 stress 0.07160272
## ... Procrustes: rmse 0.0001299539 max resid 0.0002989544
## ... Similar to previous best
## Run 17 stress 0.07237217
## Run 18 stress 0.07393039
## Run 19 stress 0.07160267
## ... Procrustes: rmse 6.91039e-05 max resid 0.0001593399
## ... Similar to previous best
## Run 20 stress 0.07393039
## *** Best solution repeated 4 times# Stratified lakes and ocean sites
spresso_NMDS <- metaMDS(spresso_dist, try = 1000, parallel = 4)## Run 0 stress 0.08013059
## Run 1 stress 0.07063396
## ... New best solution
## ... Procrustes: rmse 0.1049003 max resid 0.2672709
## Run 2 stress 0.08433843
## Run 3 stress 0.07081961
## ... Procrustes: rmse 0.01417331 max resid 0.03100685
## Run 4 stress 0.0726393
## Run 5 stress 0.07081976
## ... Procrustes: rmse 0.01403765 max resid 0.03085506
## Run 6 stress 0.07063383
## ... New best solution
## ... Procrustes: rmse 0.0001520059 max resid 0.0004150572
## ... Similar to previous best
## Run 7 stress 0.09109113
## Run 8 stress 0.08433846
## Run 9 stress 0.07081966
## ... Procrustes: rmse 0.01431369 max resid 0.03118491
## Run 10 stress 0.0706339
## ... Procrustes: rmse 0.0001053492 max resid 0.0002868593
## ... Similar to previous best
## Run 11 stress 0.08679564
## Run 12 stress 0.09576453
## Run 13 stress 0.0726393
## Run 14 stress 0.07063381
## ... New best solution
## ... Procrustes: rmse 7.4805e-05 max resid 0.0002044265
## ... Similar to previous best
## Run 15 stress 0.08013059
## Run 16 stress 0.07063382
## ... Procrustes: rmse 1.246057e-05 max resid 3.471175e-05
## ... Similar to previous best
## Run 17 stress 0.0726393
## Run 18 stress 0.08199752
## Run 19 stress 0.07081968
## ... Procrustes: rmse 0.01420632 max resid 0.03108175
## Run 20 stress 0.08199752
## *** Best solution repeated 2 times### Environmental
## Jaccard
# All sites
jprese_NMDS <- metaMDS(jprese_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.07669149
## Run 1 stress 0.07669156
## ... Procrustes: rmse 0.0001655366 max resid 0.000291146
## ... Similar to previous best
## Run 2 stress 0.08443197
## Run 3 stress 0.08362753
## Run 4 stress 0.07960657
## Run 5 stress 0.08175695
## Run 6 stress 0.08527041
## Run 7 stress 0.08317339
## Run 8 stress 0.08337137
## Run 9 stress 0.07669154
## ... Procrustes: rmse 0.0001166801 max resid 0.0001970816
## ... Similar to previous best
## Run 10 stress 0.08250194
## Run 11 stress 0.083055
## Run 12 stress 0.08063934
## Run 13 stress 0.08175698
## Run 14 stress 0.08362753
## Run 15 stress 0.0821735
## Run 16 stress 0.08182112
## Run 17 stress 0.08104886
## Run 18 stress 0.08175696
## Run 19 stress 0.07960661
## Run 20 stress 0.07669155
## ... Procrustes: rmse 0.000131207 max resid 0.0002669387
## ... Similar to previous best
## Run 21 stress 0.08250187
## Run 22 stress 0.08957518
## Run 23 stress 0.07669159
## ... Procrustes: rmse 0.0001975152 max resid 0.0003420702
## ... Similar to previous best
## Run 24 stress 0.08317321
## Run 25 stress 0.08274906
## Run 26 stress 0.08012969
## Run 27 stress 0.08104894
## Run 28 stress 0.08305238
## Run 29 stress 0.08374671
## Run 30 stress 0.0827491
## Run 31 stress 0.08241481
## Run 32 stress 0.08175716
## Run 33 stress 0.08305323
## Run 34 stress 0.08189392
## Run 35 stress 0.08003203
## Run 36 stress 0.07868332
## Run 37 stress 0.0821734
## Run 38 stress 0.08433701
## Run 39 stress 0.0766917
## ... Procrustes: rmse 0.0002645492 max resid 0.0004627334
## ... Similar to previous best
## Run 40 stress 0.07868339
## Run 41 stress 0.08175696
## Run 42 stress 0.08305444
## Run 43 stress 0.08104888
## Run 44 stress 0.08104883
## Run 45 stress 0.08218534
## Run 46 stress 0.08317317
## Run 47 stress 0.08459623
## Run 48 stress 0.08175698
## Run 49 stress 0.08249597
## Run 50 stress 0.07868354
## Run 51 stress 0.08182112
## Run 52 stress 0.08375707
## Run 53 stress 0.08514175
## Run 54 stress 0.07949011
## Run 55 stress 0.08337197
## Run 56 stress 0.08265405
## Run 57 stress 0.08175715
## Run 58 stress 0.08684152
## Run 59 stress 0.07669157
## ... Procrustes: rmse 0.0001758288 max resid 0.0003094307
## ... Similar to previous best
## Run 60 stress 0.08175702
## Run 61 stress 0.08097759
## Run 62 stress 0.08842031
## Run 63 stress 0.08470963
## Run 64 stress 0.08012952
## Run 65 stress 0.09036741
## Run 66 stress 0.08243383
## Run 67 stress 0.08477421
## Run 68 stress 0.08249615
## Run 69 stress 0.08360269
## Run 70 stress 0.08003172
## Run 71 stress 0.07731512
## Run 72 stress 0.08012987
## Run 73 stress 0.08265386
## Run 74 stress 0.07669153
## ... Procrustes: rmse 9.45236e-05 max resid 0.0001891484
## ... Similar to previous best
## Run 75 stress 0.0826532
## Run 76 stress 0.0928291
## Run 77 stress 0.08241503
## Run 78 stress 0.07669151
## ... Procrustes: rmse 6.034291e-05 max resid 0.0001095689
## ... Similar to previous best
## Run 79 stress 0.08175691
## Run 80 stress 0.08217345
## Run 81 stress 0.08210351
## Run 82 stress 0.08233291
## Run 83 stress 0.08362779
## Run 84 stress 0.07949021
## Run 85 stress 0.08252147
## Run 86 stress 0.08459666
## Run 87 stress 0.08421022
## Run 88 stress 0.0800319
## Run 89 stress 0.07669151
## ... Procrustes: rmse 7.095621e-05 max resid 0.0001453257
## ... Similar to previous best
## Run 90 stress 0.07868343
## Run 91 stress 0.08957554
## Run 92 stress 0.08305349
## Run 93 stress 0.08249621
## Run 94 stress 0.09091581
## Run 95 stress 0.08459574
## Run 96 stress 0.08104887
## Run 97 stress 0.08252155
## Run 98 stress 0.0818211
## Run 99 stress 0.07951481
## Run 100 stress 0.08433691
## Run 101 stress 0.08305347
## Run 102 stress 0.07669159
## ... Procrustes: rmse 0.0001896704 max resid 0.0003302809
## ... Similar to previous best
## Run 103 stress 0.08305304
## Run 104 stress 0.08144884
## Run 105 stress 0.07949009
## Run 106 stress 0.08453226
## Run 107 stress 0.08104925
## Run 108 stress 0.08175692
## Run 109 stress 0.08104921
## Run 110 stress 0.08553074
## Run 111 stress 0.09120166
## Run 112 stress 0.08477427
## Run 113 stress 0.08339573
## Run 114 stress 0.07943331
## Run 115 stress 0.08968613
## Run 116 stress 0.09026388
## Run 117 stress 0.08835157
## Run 118 stress 0.08493126
## Run 119 stress 0.08835197
## Run 120 stress 0.08175694
## Run 121 stress 0.07669171
## ... Procrustes: rmse 0.0002683883 max resid 0.0004927777
## ... Similar to previous best
## Run 122 stress 0.08104884
## Run 123 stress 0.08616032
## Run 124 stress 0.08265352
## Run 125 stress 0.08175709
## Run 126 stress 0.08527026
## Run 127 stress 0.08265345
## Run 128 stress 0.08175706
## Run 129 stress 0.08305415
## Run 130 stress 0.08013003
## Run 131 stress 0.08433697
## Run 132 stress 0.08003192
## Run 133 stress 0.07960677
## Run 134 stress 0.08684102
## Run 135 stress 0.08265445
## Run 136 stress 0.08182125
## Run 137 stress 0.08217341
## Run 138 stress 0.07960666
## Run 139 stress 0.0835586
## Run 140 stress 0.08717131
## Run 141 stress 0.0868264
## Run 142 stress 0.07948984
## Run 143 stress 0.08104886
## Run 144 stress 0.08175691
## Run 145 stress 0.07731513
## Run 146 stress 0.07669154
## ... Procrustes: rmse 2.949805e-05 max resid 7.00045e-05
## ... Similar to previous best
## Run 147 stress 0.08249615
## Run 148 stress 0.08957574
## Run 149 stress 0.07871773
## Run 150 stress 0.08355841
## Run 151 stress 0.0773153
## Run 152 stress 0.07868347
## Run 153 stress 0.07949042
## Run 154 stress 0.08097752
## Run 155 stress 0.0827499
## Run 156 stress 0.08360259
## Run 157 stress 0.08265444
## Run 158 stress 0.0796068
## Run 159 stress 0.08250124
## Run 160 stress 0.08265359
## Run 161 stress 0.0810492
## Run 162 stress 0.08250111
## Run 163 stress 0.08443293
## Run 164 stress 0.08182114
## Run 165 stress 0.08283551
## Run 166 stress 0.08314416
## Run 167 stress 0.08144912
## Run 168 stress 0.08317345
## Run 169 stress 0.08104883
## Run 170 stress 0.08835173
## Run 171 stress 0.07960659
## Run 172 stress 0.07669151
## ... Procrustes: rmse 8.227299e-05 max resid 0.0001457511
## ... Similar to previous best
## Run 173 stress 0.0852703
## Run 174 stress 0.0806394
## Run 175 stress 0.0826535
## Run 176 stress 0.08433706
## Run 177 stress 0.08464764
## Run 178 stress 0.08144819
## Run 179 stress 0.07951476
## Run 180 stress 0.08433705
## Run 181 stress 0.08063928
## Run 182 stress 0.07669154
## ... Procrustes: rmse 0.0001021604 max resid 0.0001798692
## ... Similar to previous best
## Run 183 stress 0.0801297
## Run 184 stress 0.08175697
## Run 185 stress 0.08175695
## Run 186 stress 0.08242385
## Run 187 stress 0.08249596
## Run 188 stress 0.07669157
## ... Procrustes: rmse 0.000157579 max resid 0.0002881126
## ... Similar to previous best
## Run 189 stress 0.08249604
## Run 190 stress 0.08249613
## Run 191 stress 0.08013012
## Run 192 stress 0.08175693
## Run 193 stress 0.08283544
## Run 194 stress 0.08433695
## Run 195 stress 0.08175692
## Run 196 stress 0.08375754
## Run 197 stress 0.07871761
## Run 198 stress 0.08421007
## Run 199 stress 0.08471588
## Run 200 stress 0.08485156
## Run 201 stress 0.08362758
## Run 202 stress 0.081757
## Run 203 stress 0.0831439
## Run 204 stress 0.08265399
## Run 205 stress 0.0817569
## Run 206 stress 0.07868355
## Run 207 stress 0.08375709
## Run 208 stress 0.08370356
## Run 209 stress 0.08317321
## Run 210 stress 0.08243381
## Run 211 stress 0.08835162
## Run 212 stress 0.08182111
## Run 213 stress 0.08175694
## Run 214 stress 0.0831443
## Run 215 stress 0.07943377
## Run 216 stress 0.08252158
## Run 217 stress 0.08418578
## Run 218 stress 0.08477426
## Run 219 stress 0.0836028
## Run 220 stress 0.07871725
## Run 221 stress 0.08249606
## Run 222 stress 0.08175694
## Run 223 stress 0.08927472
## Run 224 stress 0.08355858
## Run 225 stress 0.08003187
## Run 226 stress 0.08250153
## Run 227 stress 0.07868337
## Run 228 stress 0.08317377
## Run 229 stress 0.08375712
## Run 230 stress 0.08217351
## Run 231 stress 0.08530153
## Run 232 stress 0.08337131
## Run 233 stress 0.08097758
## Run 234 stress 0.08249617
## Run 235 stress 0.08305375
## Run 236 stress 0.08175703
## Run 237 stress 0.08379892
## Run 238 stress 0.08835132
## Run 239 stress 0.08012966
## Run 240 stress 0.07960674
## Run 241 stress 0.08182126
## Run 242 stress 0.08144906
## Run 243 stress 0.08421011
## Run 244 stress 0.08175706
## Run 245 stress 0.08835149
## Run 246 stress 0.08360271
## Run 247 stress 0.08684108
## Run 248 stress 0.08233216
## Run 249 stress 0.08217359
## Run 250 stress 0.08175724
## Run 251 stress 0.08243394
## Run 252 stress 0.08477463
## Run 253 stress 0.08097743
## Run 254 stress 0.08012947
## Run 255 stress 0.09063352
## Run 256 stress 0.07951466
## Run 257 stress 0.08265475
## Run 258 stress 0.08097745
## Run 259 stress 0.08012962
## Run 260 stress 0.07868346
## Run 261 stress 0.08003197
## Run 262 stress 0.08337155
## Run 263 stress 0.08252135
## Run 264 stress 0.08175691
## Run 265 stress 0.07960663
## Run 266 stress 0.08527042
## Run 267 stress 0.08616034
## Run 268 stress 0.08182121
## Run 269 stress 0.09091558
## Run 270 stress 0.0817571
## Run 271 stress 0.08317326
## Run 272 stress 0.07948979
## Run 273 stress 0.0824339
## Run 274 stress 0.08104914
## Run 275 stress 0.07731522
## Run 276 stress 0.08433702
## Run 277 stress 0.08012944
## Run 278 stress 0.08210361
## Run 279 stress 0.07731522
## Run 280 stress 0.08317325
## Run 281 stress 0.08317325
## Run 282 stress 0.07960661
## Run 283 stress 0.08252119
## Run 284 stress 0.08104909
## Run 285 stress 0.07669169
## ... Procrustes: rmse 0.0002721835 max resid 0.0004735134
## ... Similar to previous best
## Run 286 stress 0.08012999
## Run 287 stress 0.08360266
## Run 288 stress 0.08175689
## Run 289 stress 0.08097759
## Run 290 stress 0.08375708
## Run 291 stress 0.08471588
## Run 292 stress 0.08249597
## Run 293 stress 0.0766917
## ... Procrustes: rmse 0.0002553485 max resid 0.000437247
## ... Similar to previous best
## Run 294 stress 0.07868362
## Run 295 stress 0.08252117
## Run 296 stress 0.08305464
## Run 297 stress 0.08477447
## Run 298 stress 0.08360265
## Run 299 stress 0.08175689
## Run 300 stress 0.08265372
## Run 301 stress 0.08217347
## Run 302 stress 0.08362753
## Run 303 stress 0.08252792
## Run 304 stress 0.08252801
## Run 305 stress 0.08530174
## Run 306 stress 0.07669165
## ... Procrustes: rmse 0.0002193324 max resid 0.0003810647
## ... Similar to previous best
## Run 307 stress 0.08375714
## Run 308 stress 0.08189383
## Run 309 stress 0.08265437
## Run 310 stress 0.08370311
## Run 311 stress 0.08375723
## Run 312 stress 0.0825214
## Run 313 stress 0.08433699
## Run 314 stress 0.08182123
## Run 315 stress 0.08012969
## Run 316 stress 0.08097755
## Run 317 stress 0.08433687
## Run 318 stress 0.08252122
## Run 319 stress 0.07669174
## ... Procrustes: rmse 0.0002979431 max resid 0.0005192628
## ... Similar to previous best
## Run 320 stress 0.0836276
## Run 321 stress 0.08360272
## Run 322 stress 0.07669163
## ... Procrustes: rmse 0.0001754755 max resid 0.0003800497
## ... Similar to previous best
## Run 323 stress 0.08283545
## Run 324 stress 0.08218537
## Run 325 stress 0.0837468
## Run 326 stress 0.08097741
## Run 327 stress 0.08477411
## Run 328 stress 0.08337184
## Run 329 stress 0.079434
## Run 330 stress 0.08433694
## Run 331 stress 0.08433693
## Run 332 stress 0.08329757
## Run 333 stress 0.08252133
## Run 334 stress 0.07868379
## Run 335 stress 0.08265435
## Run 336 stress 0.08335413
## Run 337 stress 0.08104914
## Run 338 stress 0.07669178
## ... Procrustes: rmse 0.0003296265 max resid 0.0005730505
## ... Similar to previous best
## Run 339 stress 0.08485136
## Run 340 stress 0.08252142
## Run 341 stress 0.08003192
## Run 342 stress 0.08459602
## Run 343 stress 0.07948958
## Run 344 stress 0.08283575
## Run 345 stress 0.08097762
## Run 346 stress 0.08375713
## Run 347 stress 0.07943358
## Run 348 stress 0.08252124
## Run 349 stress 0.07951468
## Run 350 stress 0.08556564
## Run 351 stress 0.09022662
## Run 352 stress 0.08265416
## Run 353 stress 0.07669157
## ... Procrustes: rmse 0.0001064941 max resid 0.0001840508
## ... Similar to previous best
## Run 354 stress 0.08317355
## Run 355 stress 0.08097774
## Run 356 stress 0.08305491
## Run 357 stress 0.08144925
## Run 358 stress 0.08012969
## Run 359 stress 0.09028543
## Run 360 stress 0.08355806
## Run 361 stress 0.08682648
## Run 362 stress 0.08243365
## Run 363 stress 0.07949007
## Run 364 stress 0.0786835
## Run 365 stress 0.08375716
## Run 366 stress 0.07669151
## ... Procrustes: rmse 5.470458e-05 max resid 0.0001252378
## ... Similar to previous best
## Run 367 stress 0.0786838
## Run 368 stress 0.08305544
## Run 369 stress 0.08283543
## Run 370 stress 0.08265484
## Run 371 stress 0.07868369
## Run 372 stress 0.08252126
## Run 373 stress 0.08012994
## Run 374 stress 0.08249625
## Run 375 stress 0.08003181
## Run 376 stress 0.08477424
## Run 377 stress 0.09070288
## Run 378 stress 0.08097762
## Run 379 stress 0.08012951
## Run 380 stress 0.07731535
## Run 381 stress 0.08182112
## Run 382 stress 0.08682653
## Run 383 stress 0.08175693
## Run 384 stress 0.08233253
## Run 385 stress 0.0766915
## ... Procrustes: rmse 1.981859e-05 max resid 3.829279e-05
## ... Similar to previous best
## Run 386 stress 0.08182108
## Run 387 stress 0.08375708
## Run 388 stress 0.08182116
## Run 389 stress 0.08003185
## Run 390 stress 0.08097751
## Run 391 stress 0.08233196
## Run 392 stress 0.08218523
## Run 393 stress 0.07960662
## Run 394 stress 0.08485141
## Run 395 stress 0.07871746
## Run 396 stress 0.08360257
## Run 397 stress 0.07669157
## ... Procrustes: rmse 0.0001722046 max resid 0.0002992506
## ... Similar to previous best
## Run 398 stress 0.08097764
## Run 399 stress 0.07669158
## ... Procrustes: rmse 0.0001778122 max resid 0.0003429679
## ... Similar to previous best
## Run 400 stress 0.08249608
## Run 401 stress 0.0825019
## Run 402 stress 0.08241785
## Run 403 stress 0.08182127
## Run 404 stress 0.08175691
## Run 405 stress 0.08250151
## Run 406 stress 0.08175709
## Run 407 stress 0.08433704
## Run 408 stress 0.08370295
## Run 409 stress 0.08582934
## Run 410 stress 0.07669171
## ... Procrustes: rmse 0.0002657692 max resid 0.0004550416
## ... Similar to previous best
## Run 411 stress 0.08530184
## Run 412 stress 0.07948979
## Run 413 stress 0.07960687
## Run 414 stress 0.08097775
## Run 415 stress 0.08553063
## Run 416 stress 0.08305442
## Run 417 stress 0.08421029
## Run 418 stress 0.07960681
## Run 419 stress 0.08337118
## Run 420 stress 0.08370335
## Run 421 stress 0.082496
## Run 422 stress 0.08433687
## Run 423 stress 0.08553058
## Run 424 stress 0.0796066
## Run 425 stress 0.07731531
## Run 426 stress 0.08104884
## Run 427 stress 0.08104935
## Run 428 stress 0.08182117
## Run 429 stress 0.0854826
## Run 430 stress 0.07669186
## ... Procrustes: rmse 0.0003542539 max resid 0.0006036823
## ... Similar to previous best
## Run 431 stress 0.08375712
## Run 432 stress 0.08175689
## Run 433 stress 0.09063299
## Run 434 stress 0.08887988
## Run 435 stress 0.08527035
## Run 436 stress 0.08097754
## Run 437 stress 0.08217343
## Run 438 stress 0.08362753
## Run 439 stress 0.08175709
## Run 440 stress 0.08375761
## Run 441 stress 0.08314378
## Run 442 stress 0.08250115
## Run 443 stress 0.07868363
## Run 444 stress 0.08182119
## Run 445 stress 0.07669163
## ... Procrustes: rmse 0.0002276879 max resid 0.0003947814
## ... Similar to previous best
## Run 446 stress 0.08692112
## Run 447 stress 0.08337155
## Run 448 stress 0.08464777
## Run 449 stress 0.07871752
## Run 450 stress 0.08243385
## Run 451 stress 0.07949006
## Run 452 stress 0.08684139
## Run 453 stress 0.07948989
## Run 454 stress 0.08657654
## Run 455 stress 0.08314404
## Run 456 stress 0.08337113
## Run 457 stress 0.08835149
## Run 458 stress 0.08317378
## Run 459 stress 0.08355816
## Run 460 stress 0.07871725
## Run 461 stress 0.07669174
## ... Procrustes: rmse 0.0003068139 max resid 0.000536659
## ... Similar to previous best
## Run 462 stress 0.08104884
## Run 463 stress 0.08175691
## Run 464 stress 0.08583981
## Run 465 stress 0.08314431
## Run 466 stress 0.08339629
## Run 467 stress 0.08175692
## Run 468 stress 0.0892906
## Run 469 stress 0.08453187
## Run 470 stress 0.08003194
## Run 471 stress 0.0842272
## Run 472 stress 0.08464822
## Run 473 stress 0.08175711
## Run 474 stress 0.08104885
## Run 475 stress 0.08433687
## Run 476 stress 0.08379855
## Run 477 stress 0.08003178
## Run 478 stress 0.08217365
## Run 479 stress 0.08464825
## Run 480 stress 0.08175699
## Run 481 stress 0.0836026
## Run 482 stress 0.08243391
## Run 483 stress 0.08249604
## Run 484 stress 0.08464778
## Run 485 stress 0.08957605
## Run 486 stress 0.07948989
## Run 487 stress 0.08433692
## Run 488 stress 0.07948996
## Run 489 stress 0.08433696
## Run 490 stress 0.07731512
## Run 491 stress 0.08265473
## Run 492 stress 0.0817571
## Run 493 stress 0.07731523
## Run 494 stress 0.08317354
## Run 495 stress 0.08097757
## Run 496 stress 0.08097768
## Run 497 stress 0.08422734
## Run 498 stress 0.07669161
## ... Procrustes: rmse 0.0002168708 max resid 0.0003761869
## ... Similar to previous best
## Run 499 stress 0.07948971
## Run 500 stress 0.08175689
## *** Best solution repeated 31 times# Mixed and stratified lakes
jpresems_NMDS <- metaMDS(jpresems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08503614
## Run 1 stress 0.08440255
## ... New best solution
## ... Procrustes: rmse 0.01442995 max resid 0.04296885
## Run 2 stress 0.09465904
## Run 3 stress 0.09400524
## Run 4 stress 0.09286084
## Run 5 stress 0.08440253
## ... New best solution
## ... Procrustes: rmse 3.768082e-05 max resid 6.908018e-05
## ... Similar to previous best
## Run 6 stress 0.09030404
## Run 7 stress 0.09030404
## Run 8 stress 0.09268388
## Run 9 stress 0.09321398
## Run 10 stress 0.09286086
## Run 11 stress 0.09030399
## Run 12 stress 0.09465905
## Run 13 stress 0.09539197
## Run 14 stress 0.0937426
## Run 15 stress 0.09286085
## Run 16 stress 0.09308955
## Run 17 stress 0.09168942
## Run 18 stress 0.09408014
## Run 19 stress 0.0850356
## Run 20 stress 0.08773476
## Run 21 stress 0.09337301
## Run 22 stress 0.08503501
## Run 23 stress 0.09030396
## Run 24 stress 0.09286083
## Run 25 stress 0.08773467
## Run 26 stress 0.09465904
## Run 27 stress 0.08973886
## Run 28 stress 0.09407984
## Run 29 stress 0.0844026
## ... Procrustes: rmse 0.0001034805 max resid 0.0002109211
## ... Similar to previous best
## Run 30 stress 0.09539194
## Run 31 stress 0.08503467
## Run 32 stress 0.08503605
## Run 33 stress 0.09159085
## Run 34 stress 0.09168956
## Run 35 stress 0.09286087
## Run 36 stress 0.09407971
## Run 37 stress 0.2347241
## Run 38 stress 0.09030406
## Run 39 stress 0.09030404
## Run 40 stress 0.08773467
## Run 41 stress 0.08973864
## Run 42 stress 0.09374218
## Run 43 stress 0.09416144
## Run 44 stress 0.09030397
## Run 45 stress 0.1026215
## Run 46 stress 0.09168954
## Run 47 stress 0.09145321
## Run 48 stress 0.08503525
## Run 49 stress 0.1038041
## Run 50 stress 0.09030408
## Run 51 stress 0.08973879
## Run 52 stress 0.09159083
## Run 53 stress 0.09590868
## Run 54 stress 0.09416131
## Run 55 stress 0.09168947
## Run 56 stress 0.09308962
## Run 57 stress 0.08503635
## Run 58 stress 0.08503684
## Run 59 stress 0.2725525
## Run 60 stress 0.09030402
## Run 61 stress 0.09380577
## Run 62 stress 0.0932175
## Run 63 stress 0.09268404
## Run 64 stress 0.09145321
## Run 65 stress 0.08773489
## Run 66 stress 0.0914533
## Run 67 stress 0.100461
## Run 68 stress 0.08973863
## Run 69 stress 0.09969991
## Run 70 stress 0.09145324
## Run 71 stress 0.08503545
## Run 72 stress 0.09030408
## Run 73 stress 0.105285
## Run 74 stress 0.09403423
## Run 75 stress 0.08503506
## Run 76 stress 0.09407972
## Run 77 stress 0.09308975
## Run 78 stress 0.08440256
## ... Procrustes: rmse 4.582874e-05 max resid 0.0001031636
## ... Similar to previous best
## Run 79 stress 0.09539197
## Run 80 stress 0.09977534
## Run 81 stress 0.09321851
## Run 82 stress 0.09159098
## Run 83 stress 0.09407984
## Run 84 stress 0.0940798
## Run 85 stress 0.09159085
## Run 86 stress 0.08503495
## Run 87 stress 0.09721204
## Run 88 stress 0.0946591
## Run 89 stress 0.09145332
## Run 90 stress 0.09268403
## Run 91 stress 0.08440263
## ... Procrustes: rmse 0.0001223883 max resid 0.0002515246
## ... Similar to previous best
## Run 92 stress 0.09535491
## Run 93 stress 0.1038049
## Run 94 stress 0.09286084
## Run 95 stress 0.09145323
## Run 96 stress 0.09030401
## Run 97 stress 0.0897387
## Run 98 stress 0.09590846
## Run 99 stress 0.09539194
## Run 100 stress 0.09969972
## Run 101 stress 0.08773468
## Run 102 stress 0.09268362
## Run 103 stress 0.09445479
## Run 104 stress 0.08440252
## ... New best solution
## ... Procrustes: rmse 4.532211e-05 max resid 0.0001458128
## ... Similar to previous best
## Run 105 stress 0.09407981
## Run 106 stress 0.0903041
## Run 107 stress 0.08973878
## Run 108 stress 0.09969968
## Run 109 stress 0.09465908
## Run 110 stress 0.09145321
## Run 111 stress 0.0930898
## Run 112 stress 0.09145326
## Run 113 stress 0.09030397
## Run 114 stress 0.09465907
## Run 115 stress 0.08773466
## Run 116 stress 0.09308969
## Run 117 stress 0.09416147
## Run 118 stress 0.09030395
## Run 119 stress 0.08503461
## Run 120 stress 0.09539196
## Run 121 stress 0.09337232
## Run 122 stress 0.08503658
## Run 123 stress 0.08440251
## ... New best solution
## ... Procrustes: rmse 5.416084e-05 max resid 0.0001082743
## ... Similar to previous best
## Run 124 stress 0.09268356
## Run 125 stress 0.08973876
## Run 126 stress 0.08503514
## Run 127 stress 0.0930895
## Run 128 stress 0.09321753
## Run 129 stress 0.08503648
## Run 130 stress 0.09268336
## Run 131 stress 0.09308947
## Run 132 stress 0.09268408
## Run 133 stress 0.09286084
## Run 134 stress 0.08973893
## Run 135 stress 0.09030413
## Run 136 stress 0.08440258
## ... Procrustes: rmse 0.0001772799 max resid 0.0003472425
## ... Similar to previous best
## Run 137 stress 0.09407391
## Run 138 stress 0.09407987
## Run 139 stress 0.08440263
## ... Procrustes: rmse 0.0001980797 max resid 0.0003700055
## ... Similar to previous best
## Run 140 stress 0.09159085
## Run 141 stress 0.08503506
## Run 142 stress 0.09400541
## Run 143 stress 0.09168951
## Run 144 stress 0.09030394
## Run 145 stress 0.08503502
## Run 146 stress 0.09268367
## Run 147 stress 0.09159105
## Run 148 stress 0.08503669
## Run 149 stress 0.08973889
## Run 150 stress 0.09268355
## Run 151 stress 0.09337259
## Run 152 stress 0.08503623
## Run 153 stress 0.08973864
## Run 154 stress 0.0926841
## Run 155 stress 0.1019597
## Run 156 stress 0.0940798
## Run 157 stress 0.1038041
## Run 158 stress 0.09400521
## Run 159 stress 0.09286084
## Run 160 stress 0.08440257
## ... Procrustes: rmse 0.0001285099 max resid 0.0002385532
## ... Similar to previous best
## Run 161 stress 0.09374177
## Run 162 stress 0.09030398
## Run 163 stress 0.09286083
## Run 164 stress 0.09407966
## Run 165 stress 0.0944548
## Run 166 stress 0.0903041
## Run 167 stress 0.08440265
## ... Procrustes: rmse 0.0001931355 max resid 0.0003542269
## ... Similar to previous best
## Run 168 stress 0.09969973
## Run 169 stress 0.09308948
## Run 170 stress 0.08773487
## Run 171 stress 0.08440256
## ... Procrustes: rmse 0.000124144 max resid 0.0002322219
## ... Similar to previous best
## Run 172 stress 0.08973876
## Run 173 stress 0.09030394
## Run 174 stress 0.090304
## Run 175 stress 0.08773467
## Run 176 stress 0.09286085
## Run 177 stress 0.08440263
## ... Procrustes: rmse 0.0001934751 max resid 0.0003562264
## ... Similar to previous best
## Run 178 stress 0.08973865
## Run 179 stress 0.09465908
## Run 180 stress 0.09380599
## Run 181 stress 0.09407999
## Run 182 stress 0.09465909
## Run 183 stress 0.09465906
## Run 184 stress 0.08973874
## Run 185 stress 0.09030407
## Run 186 stress 0.09400523
## Run 187 stress 0.09416144
## Run 188 stress 0.09145326
## Run 189 stress 0.09416131
## Run 190 stress 0.08773473
## Run 191 stress 0.09030393
## Run 192 stress 0.09268372
## Run 193 stress 0.09159084
## Run 194 stress 0.09407993
## Run 195 stress 0.09721202
## Run 196 stress 0.09539194
## Run 197 stress 0.09145325
## Run 198 stress 0.08503459
## Run 199 stress 0.08973865
## Run 200 stress 0.09447299
## Run 201 stress 0.0850346
## Run 202 stress 0.09590916
## Run 203 stress 0.0946443
## Run 204 stress 0.09168928
## Run 205 stress 0.08773466
## Run 206 stress 0.09145334
## Run 207 stress 0.09030406
## Run 208 stress 0.09465904
## Run 209 stress 0.08973865
## Run 210 stress 0.08773478
## Run 211 stress 0.09465908
## Run 212 stress 0.08440253
## ... Procrustes: rmse 7.561595e-05 max resid 0.0001436028
## ... Similar to previous best
## Run 213 stress 0.09337256
## Run 214 stress 0.09145331
## Run 215 stress 0.08973862
## Run 216 stress 0.09374278
## Run 217 stress 0.09407967
## Run 218 stress 0.09030406
## Run 219 stress 0.09760832
## Run 220 stress 0.0940436
## Run 221 stress 0.08973867
## Run 222 stress 0.09400521
## Run 223 stress 0.09969978
## Run 224 stress 0.09380578
## Run 225 stress 0.09168946
## Run 226 stress 0.09464501
## Run 227 stress 0.09145322
## Run 228 stress 0.08973881
## Run 229 stress 0.09408015
## Run 230 stress 0.08503514
## Run 231 stress 0.09403411
## Run 232 stress 0.09404378
## Run 233 stress 0.09590484
## Run 234 stress 0.09400543
## Run 235 stress 0.09445481
## Run 236 stress 0.08440252
## ... Procrustes: rmse 5.564186e-05 max resid 0.000128289
## ... Similar to previous best
## Run 237 stress 0.09308958
## Run 238 stress 0.09286094
## Run 239 stress 0.09168953
## Run 240 stress 0.0940801
## Run 241 stress 0.09408004
## Run 242 stress 0.08440251
## ... Procrustes: rmse 4.72309e-05 max resid 8.84036e-05
## ... Similar to previous best
## Run 243 stress 0.09308951
## Run 244 stress 0.09590499
## Run 245 stress 0.09465906
## Run 246 stress 0.08440253
## ... Procrustes: rmse 8.55754e-05 max resid 0.0001681259
## ... Similar to previous best
## Run 247 stress 0.09159095
## Run 248 stress 0.09374308
## Run 249 stress 0.09407965
## Run 250 stress 0.09168935
## Run 251 stress 0.09145328
## Run 252 stress 0.08973862
## Run 253 stress 0.09380576
## Run 254 stress 0.09286083
## Run 255 stress 0.09337274
## Run 256 stress 0.09159087
## Run 257 stress 0.09464493
## Run 258 stress 0.09268374
## Run 259 stress 0.09145332
## Run 260 stress 0.09969992
## Run 261 stress 0.08503513
## Run 262 stress 0.09535514
## Run 263 stress 0.09416146
## Run 264 stress 0.09030401
## Run 265 stress 0.09539192
## Run 266 stress 0.2572343
## Run 267 stress 0.09381844
## Run 268 stress 0.09445472
## Run 269 stress 0.09445469
## Run 270 stress 0.08973891
## Run 271 stress 0.09159086
## Run 272 stress 0.103804
## Run 273 stress 0.08503485
## Run 274 stress 0.08773476
## Run 275 stress 0.09400527
## Run 276 stress 0.09030393
## Run 277 stress 0.1038045
## Run 278 stress 0.09168962
## Run 279 stress 0.09268381
## Run 280 stress 0.09969967
## Run 281 stress 0.09145322
## Run 282 stress 0.08503657
## Run 283 stress 0.08503487
## Run 284 stress 0.09465905
## Run 285 stress 0.0940797
## Run 286 stress 0.09168947
## Run 287 stress 0.08503498
## Run 288 stress 0.09447301
## Run 289 stress 0.09760815
## Run 290 stress 0.09159088
## Run 291 stress 0.08773477
## Run 292 stress 0.09286083
## Run 293 stress 0.09030396
## Run 294 stress 0.09159087
## Run 295 stress 0.09403416
## Run 296 stress 0.09407975
## Run 297 stress 0.0850366
## Run 298 stress 0.08503483
## Run 299 stress 0.08440253
## ... Procrustes: rmse 7.684902e-05 max resid 0.0001409014
## ... Similar to previous best
## Run 300 stress 0.08973869
## Run 301 stress 0.08973862
## Run 302 stress 0.09760836
## Run 303 stress 0.09286085
## Run 304 stress 0.09721196
## Run 305 stress 0.08440252
## ... Procrustes: rmse 4.179412e-05 max resid 7.872746e-05
## ... Similar to previous best
## Run 306 stress 0.08973863
## Run 307 stress 0.09030406
## Run 308 stress 0.08440259
## ... Procrustes: rmse 0.0001596529 max resid 0.0003152628
## ... Similar to previous best
## Run 309 stress 0.08773489
## Run 310 stress 0.09308973
## Run 311 stress 0.08773484
## Run 312 stress 0.08773483
## Run 313 stress 0.09159086
## Run 314 stress 0.0933723
## Run 315 stress 0.09416144
## Run 316 stress 0.09465908
## Run 317 stress 0.09030394
## Run 318 stress 0.09407988
## Run 319 stress 0.09030403
## Run 320 stress 0.0959061
## Run 321 stress 0.0940801
## Run 322 stress 0.1038036
## Run 323 stress 0.09465904
## Run 324 stress 0.09337233
## Run 325 stress 0.1052849
## Run 326 stress 0.09407995
## Run 327 stress 0.08503468
## Run 328 stress 0.09669899
## Run 329 stress 0.09403399
## Run 330 stress 0.09030393
## Run 331 stress 0.0926838
## Run 332 stress 0.08773476
## Run 333 stress 0.09374341
## Run 334 stress 0.09168928
## Run 335 stress 0.08503611
## Run 336 stress 0.2767929
## Run 337 stress 0.09417902
## Run 338 stress 0.08503609
## Run 339 stress 0.09400522
## Run 340 stress 0.09380577
## Run 341 stress 0.08440253
## ... Procrustes: rmse 0.0001120124 max resid 0.0002136385
## ... Similar to previous best
## Run 342 stress 0.08503502
## Run 343 stress 0.09168933
## Run 344 stress 0.09308953
## Run 345 stress 0.09381851
## Run 346 stress 0.1038042
## Run 347 stress 0.09669857
## Run 348 stress 0.09535455
## Run 349 stress 0.09380581
## Run 350 stress 0.09407991
## Run 351 stress 0.09760822
## Run 352 stress 0.09407132
## Run 353 stress 0.09308962
## Run 354 stress 0.09407966
## Run 355 stress 0.08503632
## Run 356 stress 0.09286087
## Run 357 stress 0.08440253
## ... Procrustes: rmse 8.052322e-05 max resid 0.0001549755
## ... Similar to previous best
## Run 358 stress 0.08440254
## ... Procrustes: rmse 7.599119e-05 max resid 0.0001516282
## ... Similar to previous best
## Run 359 stress 0.09407982
## Run 360 stress 0.09374262
## Run 361 stress 0.09286094
## Run 362 stress 0.08503511
## Run 363 stress 0.08773473
## Run 364 stress 0.0940797
## Run 365 stress 0.08440251
## ... Procrustes: rmse 3.314749e-05 max resid 6.205514e-05
## ... Similar to previous best
## Run 366 stress 0.0915909
## Run 367 stress 0.2793244
## Run 368 stress 0.09416142
## Run 369 stress 0.09268345
## Run 370 stress 0.09308946
## Run 371 stress 0.09168961
## Run 372 stress 0.09407986
## Run 373 stress 0.09030395
## Run 374 stress 0.0937432
## Run 375 stress 0.09030393
## Run 376 stress 0.09969983
## Run 377 stress 0.09268423
## Run 378 stress 0.09030399
## Run 379 stress 0.08503636
## Run 380 stress 0.09337272
## Run 381 stress 0.09268363
## Run 382 stress 0.08973871
## Run 383 stress 0.0930895
## Run 384 stress 0.09145336
## Run 385 stress 0.2531478
## Run 386 stress 0.09030402
## Run 387 stress 0.08503488
## Run 388 stress 0.08973891
## Run 389 stress 0.08773468
## Run 390 stress 0.09407977
## Run 391 stress 0.09159088
## Run 392 stress 0.09407392
## Run 393 stress 0.09381845
## Run 394 stress 0.09400519
## Run 395 stress 0.09374325
## Run 396 stress 0.08503614
## Run 397 stress 0.09590904
## Run 398 stress 0.09969967
## Run 399 stress 0.0933728
## Run 400 stress 0.08503511
## Run 401 stress 0.0938185
## Run 402 stress 0.09969961
## Run 403 stress 0.09374276
## Run 404 stress 0.1084719
## Run 405 stress 0.09268344
## Run 406 stress 0.08503456
## Run 407 stress 0.08440257
## ... Procrustes: rmse 0.0001357901 max resid 0.0002865257
## ... Similar to previous best
## Run 408 stress 0.09407471
## Run 409 stress 0.09407971
## Run 410 stress 0.08773471
## Run 411 stress 0.09308977
## Run 412 stress 0.09445474
## Run 413 stress 0.08440251
## ... Procrustes: rmse 3.274066e-05 max resid 6.186778e-05
## ... Similar to previous best
## Run 414 stress 0.1072865
## Run 415 stress 0.09416143
## Run 416 stress 0.08973863
## Run 417 stress 0.09268418
## Run 418 stress 0.08973882
## Run 419 stress 0.09407991
## Run 420 stress 0.09407977
## Run 421 stress 0.09539211
## Run 422 stress 0.08973879
## Run 423 stress 0.09539194
## Run 424 stress 0.09374348
## Run 425 stress 0.08973865
## Run 426 stress 0.09400528
## Run 427 stress 0.09590908
## Run 428 stress 0.09159085
## Run 429 stress 0.0953921
## Run 430 stress 0.09447306
## Run 431 stress 0.09969983
## Run 432 stress 0.09159093
## Run 433 stress 0.09030402
## Run 434 stress 0.09407964
## Run 435 stress 0.09030398
## Run 436 stress 0.09465906
## Run 437 stress 0.094644
## Run 438 stress 0.09030393
## Run 439 stress 0.08503516
## Run 440 stress 0.0933726
## Run 441 stress 0.08503479
## Run 442 stress 0.09159095
## Run 443 stress 0.09268389
## Run 444 stress 0.09408016
## Run 445 stress 0.08440251
## ... Procrustes: rmse 3.869244e-05 max resid 7.587639e-05
## ... Similar to previous best
## Run 446 stress 0.09168927
## Run 447 stress 0.09159085
## Run 448 stress 0.09030409
## Run 449 stress 0.09407995
## Run 450 stress 0.09539192
## Run 451 stress 0.0877347
## Run 452 stress 0.09374208
## Run 453 stress 0.08440259
## ... Procrustes: rmse 0.0001577305 max resid 0.0002956304
## ... Similar to previous best
## Run 454 stress 0.08973886
## Run 455 stress 0.09030396
## Run 456 stress 0.08440257
## ... Procrustes: rmse 0.0001242551 max resid 0.000232674
## ... Similar to previous best
## Run 457 stress 0.09407975
## Run 458 stress 0.09969986
## Run 459 stress 0.08973864
## Run 460 stress 0.09286087
## Run 461 stress 0.09030393
## Run 462 stress 0.09268354
## Run 463 stress 0.09159084
## Run 464 stress 0.09407985
## Run 465 stress 0.08773477
## Run 466 stress 0.09030393
## Run 467 stress 0.09030395
## Run 468 stress 0.08440251
## ... Procrustes: rmse 1.885136e-05 max resid 3.269474e-05
## ... Similar to previous best
## Run 469 stress 0.08973882
## Run 470 stress 0.08773466
## Run 471 stress 0.09407972
## Run 472 stress 0.09308987
## Run 473 stress 0.08440255
## ... Procrustes: rmse 0.0001125257 max resid 0.0002353935
## ... Similar to previous best
## Run 474 stress 0.1006349
## Run 475 stress 0.0933731
## Run 476 stress 0.09380575
## Run 477 stress 0.09416149
## Run 478 stress 0.09374331
## Run 479 stress 0.08973868
## Run 480 stress 0.09539193
## Run 481 stress 0.08503479
## Run 482 stress 0.08503563
## Run 483 stress 0.08503515
## Run 484 stress 0.09447298
## Run 485 stress 0.08973882
## Run 486 stress 0.09159083
## Run 487 stress 0.09168958
## Run 488 stress 0.1038037
## Run 489 stress 0.08773476
## Run 490 stress 0.09030393
## Run 491 stress 0.09168951
## Run 492 stress 0.08440254
## ... Procrustes: rmse 0.0001198362 max resid 0.0002357284
## ... Similar to previous best
## Run 493 stress 0.08503471
## Run 494 stress 0.08503482
## Run 495 stress 0.09969977
## Run 496 stress 0.09030399
## Run 497 stress 0.09590566
## Run 498 stress 0.09760814
## Run 499 stress 0.09403397
## Run 500 stress 0.09168939
## *** Best solution repeated 26 times# Ocean sites and mixed lakes
jpreseom_NMDS <- metaMDS(jpreseom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.06623458
## Run 1 stress 0.06477886
## ... New best solution
## ... Procrustes: rmse 0.151836 max resid 0.2644403
## Run 2 stress 0.07411943
## Run 3 stress 0.07411938
## Run 4 stress 0.07411945
## Run 5 stress 0.08226183
## Run 6 stress 0.07166978
## Run 7 stress 0.06477849
## ... New best solution
## ... Procrustes: rmse 0.0003058698 max resid 0.0005139809
## ... Similar to previous best
## Run 8 stress 0.07166968
## Run 9 stress 0.06623457
## Run 10 stress 0.06477889
## ... Procrustes: rmse 0.001699702 max resid 0.002864461
## ... Similar to previous best
## Run 11 stress 0.06477851
## ... Procrustes: rmse 2.311417e-05 max resid 3.863836e-05
## ... Similar to previous best
## Run 12 stress 0.06623461
## Run 13 stress 0.06123361
## ... New best solution
## ... Procrustes: rmse 0.08982586 max resid 0.2166894
## Run 14 stress 0.06124505
## ... Procrustes: rmse 0.0151004 max resid 0.04181963
## Run 15 stress 0.06623457
## Run 16 stress 0.07411938
## Run 17 stress 0.3271654
## Run 18 stress 0.0741194
## Run 19 stress 0.07411939
## Run 20 stress 0.08226156
## Run 21 stress 0.0612449
## ... Procrustes: rmse 0.01493943 max resid 0.04138632
## Run 22 stress 0.07166968
## Run 23 stress 0.07411952
## Run 24 stress 0.06623457
## Run 25 stress 0.06124486
## ... Procrustes: rmse 0.01478484 max resid 0.04096909
## Run 26 stress 0.0716697
## Run 27 stress 0.07411948
## Run 28 stress 0.0662346
## Run 29 stress 0.06124515
## ... Procrustes: rmse 0.01516737 max resid 0.04199926
## Run 30 stress 0.09093895
## Run 31 stress 0.06623459
## Run 32 stress 0.07411939
## Run 33 stress 0.06124523
## ... Procrustes: rmse 0.01522385 max resid 0.04215056
## Run 34 stress 0.2345379
## Run 35 stress 0.06123362
## ... Procrustes: rmse 6.407176e-05 max resid 7.827092e-05
## ... Similar to previous best
## Run 36 stress 0.06477858
## Run 37 stress 0.3013217
## Run 38 stress 0.06124509
## ... Procrustes: rmse 0.01516025 max resid 0.0419771
## Run 39 stress 0.06477979
## Run 40 stress 0.06124497
## ... Procrustes: rmse 0.01504938 max resid 0.04168094
## Run 41 stress 0.06124497
## ... Procrustes: rmse 0.01504566 max resid 0.0416703
## Run 42 stress 0.06477916
## Run 43 stress 0.06124515
## ... Procrustes: rmse 0.01513569 max resid 0.04190823
## Run 44 stress 0.06478017
## Run 45 stress 0.0647787
## Run 46 stress 0.06477947
## Run 47 stress 0.06123361
## ... Procrustes: rmse 5.246123e-05 max resid 6.504729e-05
## ... Similar to previous best
## Run 48 stress 0.07166968
## Run 49 stress 0.07166979
## Run 50 stress 0.07166989
## Run 51 stress 0.06623457
## Run 52 stress 0.07166978
## Run 53 stress 0.06623459
## Run 54 stress 0.07166964
## Run 55 stress 0.06477842
## Run 56 stress 0.06623459
## Run 57 stress 0.06124501
## ... Procrustes: rmse 0.01508659 max resid 0.0417797
## Run 58 stress 0.07166983
## Run 59 stress 0.06123364
## ... Procrustes: rmse 9.770767e-05 max resid 0.0001365167
## ... Similar to previous best
## Run 60 stress 0.06623457
## Run 61 stress 0.3271668
## Run 62 stress 0.07411942
## Run 63 stress 0.06477961
## Run 64 stress 0.06477879
## Run 65 stress 0.07411938
## Run 66 stress 0.08226162
## Run 67 stress 0.07411949
## Run 68 stress 0.3275394
## Run 69 stress 0.07166971
## Run 70 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 9.170066e-06 max resid 1.881024e-05
## ... Similar to previous best
## Run 71 stress 0.06623463
## Run 72 stress 0.06123361
## ... Procrustes: rmse 1.014284e-05 max resid 2.321901e-05
## ... Similar to previous best
## Run 73 stress 0.06623461
## Run 74 stress 0.07411943
## Run 75 stress 0.06623459
## Run 76 stress 0.07166968
## Run 77 stress 0.07411939
## Run 78 stress 0.08226171
## Run 79 stress 0.06124494
## ... Procrustes: rmse 0.01453098 max resid 0.04029075
## Run 80 stress 0.07411945
## Run 81 stress 0.0662346
## Run 82 stress 0.06124492
## ... Procrustes: rmse 0.01497043 max resid 0.04146975
## Run 83 stress 0.07411944
## Run 84 stress 0.06623458
## Run 85 stress 0.2629205
## Run 86 stress 0.2362366
## Run 87 stress 0.06477865
## Run 88 stress 0.07166964
## Run 89 stress 0.07411941
## Run 90 stress 0.06477837
## Run 91 stress 0.0716697
## Run 92 stress 0.07166975
## Run 93 stress 0.07411945
## Run 94 stress 0.06623461
## Run 95 stress 0.08226163
## Run 96 stress 0.06124486
## ... Procrustes: rmse 0.01474263 max resid 0.04085883
## Run 97 stress 0.07411939
## Run 98 stress 0.06124529
## ... Procrustes: rmse 0.01528903 max resid 0.04232235
## Run 99 stress 0.06124522
## ... Procrustes: rmse 0.01427872 max resid 0.03961298
## Run 100 stress 0.06477954
## Run 101 stress 0.06124489
## ... Procrustes: rmse 0.01491644 max resid 0.04132468
## Run 102 stress 0.07411943
## Run 103 stress 0.07411941
## Run 104 stress 0.07166969
## Run 105 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 1.694264e-05 max resid 2.838339e-05
## ... Similar to previous best
## Run 106 stress 0.06623461
## Run 107 stress 0.06623459
## Run 108 stress 0.08226159
## Run 109 stress 0.07411952
## Run 110 stress 0.0741195
## Run 111 stress 0.07166982
## Run 112 stress 0.06124509
## ... Procrustes: rmse 0.01516347 max resid 0.04198589
## Run 113 stress 0.06623457
## Run 114 stress 0.06477955
## Run 115 stress 0.06124501
## ... Procrustes: rmse 0.01509515 max resid 0.04180273
## Run 116 stress 0.06124509
## ... Procrustes: rmse 0.01516867 max resid 0.04199885
## Run 117 stress 0.0612336
## ... Procrustes: rmse 9.698205e-06 max resid 2.165148e-05
## ... Similar to previous best
## Run 118 stress 0.06124496
## ... Procrustes: rmse 0.01503891 max resid 0.04165235
## Run 119 stress 0.06477931
## Run 120 stress 0.06124503
## ... Procrustes: rmse 0.01511676 max resid 0.04185999
## Run 121 stress 0.07411944
## Run 122 stress 0.07166966
## Run 123 stress 0.2362366
## Run 124 stress 0.061245
## ... Procrustes: rmse 0.01505682 max resid 0.04170148
## Run 125 stress 0.0662346
## Run 126 stress 0.06124488
## ... Procrustes: rmse 0.01490415 max resid 0.04129076
## Run 127 stress 0.08226162
## Run 128 stress 0.06623463
## Run 129 stress 0.07166982
## Run 130 stress 0.07411947
## Run 131 stress 0.06123361
## ... Procrustes: rmse 1.845302e-05 max resid 4.330387e-05
## ... Similar to previous best
## Run 132 stress 0.06477828
## Run 133 stress 0.07166966
## Run 134 stress 0.07411951
## Run 135 stress 0.06623459
## Run 136 stress 0.06623467
## Run 137 stress 0.07411944
## Run 138 stress 0.06124521
## ... Procrustes: rmse 0.01521607 max resid 0.0421287
## Run 139 stress 0.06623462
## Run 140 stress 0.06124508
## ... Procrustes: rmse 0.01515924 max resid 0.04197416
## Run 141 stress 0.06124486
## ... Procrustes: rmse 0.01471664 max resid 0.04078824
## Run 142 stress 0.06124489
## ... Procrustes: rmse 0.01485957 max resid 0.04117143
## Run 143 stress 0.08226167
## Run 144 stress 0.06623461
## Run 145 stress 0.06124503
## ... Procrustes: rmse 0.01510798 max resid 0.04183772
## Run 146 stress 0.07166994
## Run 147 stress 0.07166987
## Run 148 stress 0.06477871
## Run 149 stress 0.06124504
## ... Procrustes: rmse 0.01510422 max resid 0.0418251
## Run 150 stress 0.06623459
## Run 151 stress 0.07411943
## Run 152 stress 0.0662346
## Run 153 stress 0.06623459
## Run 154 stress 0.07166978
## Run 155 stress 0.07166992
## Run 156 stress 0.07166968
## Run 157 stress 0.2361811
## Run 158 stress 0.07411945
## Run 159 stress 0.06124486
## ... Procrustes: rmse 0.01481311 max resid 0.04104717
## Run 160 stress 0.06477891
## Run 161 stress 0.2381016
## Run 162 stress 0.06477905
## Run 163 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 1.139241e-05 max resid 2.370824e-05
## ... Similar to previous best
## Run 164 stress 0.06623459
## Run 165 stress 0.06124508
## ... Procrustes: rmse 0.01514748 max resid 0.04194248
## Run 166 stress 0.3407335
## Run 167 stress 0.07411942
## Run 168 stress 0.325193
## Run 169 stress 0.07411944
## Run 170 stress 0.305436
## Run 171 stress 0.07411949
## Run 172 stress 0.07411954
## Run 173 stress 0.0741194
## Run 174 stress 0.06623457
## Run 175 stress 0.07411938
## Run 176 stress 0.06477878
## Run 177 stress 0.06477903
## Run 178 stress 0.06124491
## ... Procrustes: rmse 0.01496181 max resid 0.04144591
## Run 179 stress 0.0662346
## Run 180 stress 0.06623458
## Run 181 stress 0.06623463
## Run 182 stress 0.08226156
## Run 183 stress 0.07411941
## Run 184 stress 0.08226169
## Run 185 stress 0.0741195
## Run 186 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 4.270022e-06 max resid 9.569375e-06
## ... Similar to previous best
## Run 187 stress 0.0612449
## ... Procrustes: rmse 0.0149344 max resid 0.04137225
## Run 188 stress 0.06124503
## ... Procrustes: rmse 0.01510985 max resid 0.04184222
## Run 189 stress 0.06124531
## ... Procrustes: rmse 0.01423045 max resid 0.03948118
## Run 190 stress 0.06477889
## Run 191 stress 0.06477939
## Run 192 stress 0.07166965
## Run 193 stress 0.06477834
## Run 194 stress 0.07411952
## Run 195 stress 0.07166968
## Run 196 stress 0.07411942
## Run 197 stress 0.06623465
## Run 198 stress 0.06477909
## Run 199 stress 0.300852
## Run 200 stress 0.07166965
## Run 201 stress 0.06124504
## ... Procrustes: rmse 0.01506322 max resid 0.04171434
## Run 202 stress 0.07166965
## Run 203 stress 0.06623457
## Run 204 stress 0.2593351
## Run 205 stress 0.06623457
## Run 206 stress 0.07411942
## Run 207 stress 0.07166977
## Run 208 stress 0.06477954
## Run 209 stress 0.07411943
## Run 210 stress 0.06623462
## Run 211 stress 0.06623459
## Run 212 stress 0.07411947
## Run 213 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 2.380441e-06 max resid 5.694634e-06
## ... Similar to previous best
## Run 214 stress 0.0741194
## Run 215 stress 0.0662346
## Run 216 stress 0.07411938
## Run 217 stress 0.07411942
## Run 218 stress 0.07411939
## Run 219 stress 0.0741194
## Run 220 stress 0.08226177
## Run 221 stress 0.06477848
## Run 222 stress 0.07166968
## Run 223 stress 0.06477901
## Run 224 stress 0.3407342
## Run 225 stress 0.06623457
## Run 226 stress 0.06124502
## ... Procrustes: rmse 0.01509739 max resid 0.04180906
## Run 227 stress 0.06124496
## ... Procrustes: rmse 0.01503212 max resid 0.04163408
## Run 228 stress 0.06623457
## Run 229 stress 0.06477847
## Run 230 stress 0.06477969
## Run 231 stress 0.07166973
## Run 232 stress 0.06623462
## Run 233 stress 0.06477832
## Run 234 stress 0.06124521
## ... Procrustes: rmse 0.01525076 max resid 0.04221925
## Run 235 stress 0.06623457
## Run 236 stress 0.3407335
## Run 237 stress 0.0612451
## ... Procrustes: rmse 0.01511016 max resid 0.04183942
## Run 238 stress 0.06124496
## ... Procrustes: rmse 0.0145231 max resid 0.04026837
## Run 239 stress 0.06124535
## ... Procrustes: rmse 0.01424462 max resid 0.03951732
## Run 240 stress 0.06623465
## Run 241 stress 0.2520055
## Run 242 stress 0.2362366
## Run 243 stress 0.06124494
## ... Procrustes: rmse 0.01500796 max resid 0.04156914
## Run 244 stress 0.2345379
## Run 245 stress 0.07166973
## Run 246 stress 0.08226158
## Run 247 stress 0.07411942
## Run 248 stress 0.07166969
## Run 249 stress 0.07411949
## Run 250 stress 0.06623468
## Run 251 stress 0.06477871
## Run 252 stress 0.0612451
## ... Procrustes: rmse 0.01516893 max resid 0.04199967
## Run 253 stress 0.2570202
## Run 254 stress 0.06124492
## ... Procrustes: rmse 0.01497526 max resid 0.04148157
## Run 255 stress 0.07166975
## Run 256 stress 0.06623459
## Run 257 stress 0.0741195
## Run 258 stress 0.06623463
## Run 259 stress 0.07166968
## Run 260 stress 0.08226157
## Run 261 stress 0.08226159
## Run 262 stress 0.0612336
## ... Procrustes: rmse 6.393697e-06 max resid 1.672268e-05
## ... Similar to previous best
## Run 263 stress 0.06124528
## ... Procrustes: rmse 0.015285 max resid 0.04230905
## Run 264 stress 0.0716698
## Run 265 stress 0.06124496
## ... Procrustes: rmse 0.01503185 max resid 0.04163268
## Run 266 stress 0.07411948
## Run 267 stress 0.07411943
## Run 268 stress 0.07166981
## Run 269 stress 0.06124501
## ... Procrustes: rmse 0.01508981 max resid 0.04178873
## Run 270 stress 0.07411948
## Run 271 stress 0.06477971
## Run 272 stress 0.06123362
## ... Procrustes: rmse 5.250669e-05 max resid 0.0001203502
## ... Similar to previous best
## Run 273 stress 0.06477837
## Run 274 stress 0.07166981
## Run 275 stress 0.07166964
## Run 276 stress 0.07411944
## Run 277 stress 0.07411938
## Run 278 stress 0.0741194
## Run 279 stress 0.06623457
## Run 280 stress 0.07411946
## Run 281 stress 0.06477863
## Run 282 stress 0.06623462
## Run 283 stress 0.08226162
## Run 284 stress 0.06477858
## Run 285 stress 0.08226158
## Run 286 stress 0.07411945
## Run 287 stress 0.06477931
## Run 288 stress 0.07166972
## Run 289 stress 0.07411944
## Run 290 stress 0.06623459
## Run 291 stress 0.07411949
## Run 292 stress 0.07411951
## Run 293 stress 0.06124498
## ... Procrustes: rmse 0.01504502 max resid 0.04166935
## Run 294 stress 0.06477866
## Run 295 stress 0.0612336
## ... Procrustes: rmse 1.175404e-05 max resid 1.534816e-05
## ... Similar to previous best
## Run 296 stress 0.07411957
## Run 297 stress 0.06124492
## ... Procrustes: rmse 0.01497184 max resid 0.0414726
## Run 298 stress 0.06477919
## Run 299 stress 0.06124522
## ... Procrustes: rmse 0.01525572 max resid 0.04223188
## Run 300 stress 0.0647785
## Run 301 stress 0.07411956
## Run 302 stress 0.06477827
## Run 303 stress 0.06623462
## Run 304 stress 0.06124513
## ... Procrustes: rmse 0.01515855 max resid 0.04197463
## Run 305 stress 0.06477846
## Run 306 stress 0.0612336
## ... Procrustes: rmse 7.660537e-06 max resid 1.208136e-05
## ... Similar to previous best
## Run 307 stress 0.2593351
## Run 308 stress 0.07411939
## Run 309 stress 0.0741194
## Run 310 stress 0.07166973
## Run 311 stress 0.07411939
## Run 312 stress 0.08226158
## Run 313 stress 0.07166966
## Run 314 stress 0.06477862
## Run 315 stress 0.06124514
## ... Procrustes: rmse 0.0151579 max resid 0.0419676
## Run 316 stress 0.07166981
## Run 317 stress 0.06124502
## ... Procrustes: rmse 0.01509454 max resid 0.04180062
## Run 318 stress 0.0716697
## Run 319 stress 0.07411938
## Run 320 stress 0.07411947
## Run 321 stress 0.07411945
## Run 322 stress 0.07411938
## Run 323 stress 0.06623459
## Run 324 stress 0.06623458
## Run 325 stress 0.07411946
## Run 326 stress 0.0741194
## Run 327 stress 0.06623461
## Run 328 stress 0.06623457
## Run 329 stress 0.06124513
## ... Procrustes: rmse 0.01519453 max resid 0.04206785
## Run 330 stress 0.06123361
## ... Procrustes: rmse 2.511771e-05 max resid 3.402395e-05
## ... Similar to previous best
## Run 331 stress 0.0612336
## ... Procrustes: rmse 9.775366e-06 max resid 1.986939e-05
## ... Similar to previous best
## Run 332 stress 0.08226156
## Run 333 stress 0.06623457
## Run 334 stress 0.06477935
## Run 335 stress 0.07166976
## Run 336 stress 0.07411942
## Run 337 stress 0.061245
## ... Procrustes: rmse 0.01507634 max resid 0.04175168
## Run 338 stress 0.07411942
## Run 339 stress 0.06477828
## Run 340 stress 0.06124522
## ... Procrustes: rmse 0.01525588 max resid 0.04223291
## Run 341 stress 0.07411939
## Run 342 stress 0.06623461
## Run 343 stress 0.07411944
## Run 344 stress 0.06477953
## Run 345 stress 0.07166983
## Run 346 stress 0.06623463
## Run 347 stress 0.0647796
## Run 348 stress 0.06477874
## Run 349 stress 0.07411939
## Run 350 stress 0.311412
## Run 351 stress 0.06623457
## Run 352 stress 0.06124536
## ... Procrustes: rmse 0.01529888 max resid 0.04234416
## Run 353 stress 0.07411949
## Run 354 stress 0.2518588
## Run 355 stress 0.07411942
## Run 356 stress 0.0741194
## Run 357 stress 0.06123363
## ... Procrustes: rmse 7.777242e-05 max resid 0.0001021457
## ... Similar to previous best
## Run 358 stress 0.06623459
## Run 359 stress 0.0741194
## Run 360 stress 0.06623469
## Run 361 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 2.873554e-06 max resid 6.602872e-06
## ... Similar to previous best
## Run 362 stress 0.06477879
## Run 363 stress 0.06477879
## Run 364 stress 0.0647792
## Run 365 stress 0.06123362
## ... Procrustes: rmse 6.032999e-05 max resid 7.612762e-05
## ... Similar to previous best
## Run 366 stress 0.06124492
## ... Procrustes: rmse 0.01458546 max resid 0.04043679
## Run 367 stress 0.06477946
## Run 368 stress 0.06623466
## Run 369 stress 0.0647796
## Run 370 stress 0.07411945
## Run 371 stress 0.07411941
## Run 372 stress 0.08226162
## Run 373 stress 0.0741194
## Run 374 stress 0.07411941
## Run 375 stress 0.07411948
## Run 376 stress 0.06623458
## Run 377 stress 0.06477883
## Run 378 stress 0.06477888
## Run 379 stress 0.07411938
## Run 380 stress 0.06623458
## Run 381 stress 0.06124501
## ... Procrustes: rmse 0.01507633 max resid 0.04175036
## Run 382 stress 0.2381016
## Run 383 stress 0.07411938
## Run 384 stress 0.06623461
## Run 385 stress 0.0741194
## Run 386 stress 0.06623459
## Run 387 stress 0.06623466
## Run 388 stress 0.07166978
## Run 389 stress 0.06124507
## ... Procrustes: rmse 0.0150412 max resid 0.04166146
## Run 390 stress 0.07411939
## Run 391 stress 0.07411944
## Run 392 stress 0.06124503
## ... Procrustes: rmse 0.01511349 max resid 0.04185177
## Run 393 stress 0.06477828
## Run 394 stress 0.06623458
## Run 395 stress 0.06477852
## Run 396 stress 0.07411946
## Run 397 stress 0.0741194
## Run 398 stress 0.06124509
## ... Procrustes: rmse 0.01516529 max resid 0.04198969
## Run 399 stress 0.0822616
## Run 400 stress 0.07411941
## Run 401 stress 0.06477899
## Run 402 stress 0.06623463
## Run 403 stress 0.06477881
## Run 404 stress 0.08226163
## Run 405 stress 0.0822616
## Run 406 stress 0.06623457
## Run 407 stress 0.06623465
## Run 408 stress 0.0662346
## Run 409 stress 0.2629205
## Run 410 stress 0.3269891
## Run 411 stress 0.06623458
## Run 412 stress 0.06623472
## Run 413 stress 0.06623458
## Run 414 stress 0.08226155
## Run 415 stress 0.08226162
## Run 416 stress 0.07411939
## Run 417 stress 0.06477907
## Run 418 stress 0.06623457
## Run 419 stress 0.0612451
## ... Procrustes: rmse 0.01517443 max resid 0.04201453
## Run 420 stress 0.07411939
## Run 421 stress 0.06123361
## ... Procrustes: rmse 1.843663e-05 max resid 4.242721e-05
## ... Similar to previous best
## Run 422 stress 0.06477873
## Run 423 stress 0.06477849
## Run 424 stress 0.06124509
## ... Procrustes: rmse 0.0151483 max resid 0.0419461
## Run 425 stress 0.07166979
## Run 426 stress 0.07166977
## Run 427 stress 0.06623459
## Run 428 stress 0.07411938
## Run 429 stress 0.07411951
## Run 430 stress 0.3403703
## Run 431 stress 0.07411949
## Run 432 stress 0.07411947
## Run 433 stress 0.09093964
## Run 434 stress 0.07411952
## Run 435 stress 0.06124501
## ... Procrustes: rmse 0.01508006 max resid 0.04176321
## Run 436 stress 0.07411938
## Run 437 stress 0.08226165
## Run 438 stress 0.0612336
## ... Procrustes: rmse 7.630716e-06 max resid 9.428456e-06
## ... Similar to previous best
## Run 439 stress 0.07411946
## Run 440 stress 0.3157867
## Run 441 stress 0.0662346
## Run 442 stress 0.08226165
## Run 443 stress 0.06623458
## Run 444 stress 0.06623469
## Run 445 stress 0.06477979
## Run 446 stress 0.07411946
## Run 447 stress 0.08226167
## Run 448 stress 0.06124512
## ... Procrustes: rmse 0.01518546 max resid 0.04204463
## Run 449 stress 0.07166964
## Run 450 stress 0.3252882
## Run 451 stress 0.06123361
## ... Procrustes: rmse 1.307703e-05 max resid 1.973796e-05
## ... Similar to previous best
## Run 452 stress 0.06124496
## ... Procrustes: rmse 0.01503582 max resid 0.0416436
## Run 453 stress 0.06623457
## Run 454 stress 0.06623458
## Run 455 stress 0.0612336
## ... Procrustes: rmse 1.064345e-05 max resid 2.485523e-05
## ... Similar to previous best
## Run 456 stress 0.07411941
## Run 457 stress 0.2345379
## Run 458 stress 0.06477889
## Run 459 stress 0.06124512
## ... Procrustes: rmse 0.01517089 max resid 0.04200678
## Run 460 stress 0.2570191
## Run 461 stress 0.06124508
## ... Procrustes: rmse 0.01515641 max resid 0.04196615
## Run 462 stress 0.07411939
## Run 463 stress 0.0612336
## ... Procrustes: rmse 1.019825e-05 max resid 2.204993e-05
## ... Similar to previous best
## Run 464 stress 0.06477925
## Run 465 stress 0.06477826
## Run 466 stress 0.3407338
## Run 467 stress 0.08226169
## Run 468 stress 0.06123361
## ... Procrustes: rmse 2.743046e-05 max resid 6.429227e-05
## ... Similar to previous best
## Run 469 stress 0.06623458
## Run 470 stress 0.0612452
## ... Procrustes: rmse 0.01524406 max resid 0.0422011
## Run 471 stress 0.06623458
## Run 472 stress 0.06623466
## Run 473 stress 0.07411946
## Run 474 stress 0.07411943
## Run 475 stress 0.07166971
## Run 476 stress 0.06477892
## Run 477 stress 0.06477844
## Run 478 stress 0.06124488
## ... Procrustes: rmse 0.01490081 max resid 0.04128201
## Run 479 stress 0.08226157
## Run 480 stress 0.2548128
## Run 481 stress 0.06124505
## ... Procrustes: rmse 0.0151068 max resid 0.04183177
## Run 482 stress 0.0716698
## Run 483 stress 0.06477844
## Run 484 stress 0.3266727
## Run 485 stress 0.07411952
## Run 486 stress 0.06477878
## Run 487 stress 0.06124492
## ... Procrustes: rmse 0.01497704 max resid 0.041486
## Run 488 stress 0.06124517
## ... Procrustes: rmse 0.01522314 max resid 0.04214519
## Run 489 stress 0.07166971
## Run 490 stress 0.07411938
## Run 491 stress 0.06623468
## Run 492 stress 0.06124493
## ... Procrustes: rmse 0.01456431 max resid 0.04037918
## Run 493 stress 0.06124508
## ... Procrustes: rmse 0.01515175 max resid 0.0419541
## Run 494 stress 0.06124501
## ... Procrustes: rmse 0.01508851 max resid 0.04178431
## Run 495 stress 0.08226171
## Run 496 stress 0.06477934
## Run 497 stress 0.06477941
## Run 498 stress 0.0741194
## Run 499 stress 0.07166983
## Run 500 stress 0.06623459
## *** Best solution repeated 8 times# Stratified lakes and ocean sites
jpreseso_NMDS <- metaMDS(jpreseso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 9.59483e-05
## Run 1 stress 9.472853e-05
## ... New best solution
## ... Procrustes: rmse 6.410754e-05 max resid 0.0001483241
## ... Similar to previous best
## Run 2 stress 9.235246e-05
## ... New best solution
## ... Procrustes: rmse 0.0001627853 max resid 0.0003795381
## ... Similar to previous best
## Run 3 stress 9.566894e-05
## ... Procrustes: rmse 0.0001822457 max resid 0.0003903129
## ... Similar to previous best
## Run 4 stress 9.751814e-05
## ... Procrustes: rmse 4.00838e-05 max resid 0.0001000457
## ... Similar to previous best
## Run 5 stress 8.74836e-05
## ... New best solution
## ... Procrustes: rmse 0.000159803 max resid 0.0002788223
## ... Similar to previous best
## Run 6 stress 9.960134e-05
## ... Procrustes: rmse 8.498542e-05 max resid 0.0001964046
## ... Similar to previous best
## Run 7 stress 9.731831e-05
## ... Procrustes: rmse 0.0001574507 max resid 0.0002559306
## ... Similar to previous best
## Run 8 stress 9.217079e-05
## ... Procrustes: rmse 0.0001783147 max resid 0.0003006826
## ... Similar to previous best
## Run 9 stress 8.130857e-05
## ... New best solution
## ... Procrustes: rmse 0.0001116355 max resid 0.0002425482
## ... Similar to previous best
## Run 10 stress 9.507079e-05
## ... Procrustes: rmse 0.0001844149 max resid 0.0003039696
## ... Similar to previous best
## Run 11 stress 9.188973e-05
## ... Procrustes: rmse 0.000186963 max resid 0.000297401
## ... Similar to previous best
## Run 12 stress 9.296862e-05
## ... Procrustes: rmse 0.0001466515 max resid 0.0002524603
## ... Similar to previous best
## Run 13 stress 9.160853e-05
## ... Procrustes: rmse 9.073004e-05 max resid 0.0001740409
## ... Similar to previous best
## Run 14 stress 8.570971e-05
## ... Procrustes: rmse 0.0001285523 max resid 0.0002992416
## ... Similar to previous best
## Run 15 stress 9.268619e-05
## ... Procrustes: rmse 0.000160145 max resid 0.0002605717
## ... Similar to previous best
## Run 16 stress 9.1126e-05
## ... Procrustes: rmse 0.0001460265 max resid 0.0002230246
## ... Similar to previous best
## Run 17 stress 9.209561e-05
## ... Procrustes: rmse 0.0001426953 max resid 0.0002177961
## ... Similar to previous best
## Run 18 stress 9.598348e-05
## ... Procrustes: rmse 0.0001655659 max resid 0.0002837245
## ... Similar to previous best
## Run 19 stress 9.335202e-05
## ... Procrustes: rmse 0.0001499447 max resid 0.000262054
## ... Similar to previous best
## Run 20 stress 9.802253e-05
## ... Procrustes: rmse 0.0001493903 max resid 0.0002612456
## ... Similar to previous best
## Run 21 stress 8.231371e-05
## ... Procrustes: rmse 0.0001362094 max resid 0.0002063267
## ... Similar to previous best
## Run 22 stress 9.814228e-05
## ... Procrustes: rmse 0.0001405211 max resid 0.0002668665
## ... Similar to previous best
## Run 23 stress 9.983722e-05
## ... Procrustes: rmse 0.0001933951 max resid 0.0004021422
## ... Similar to previous best
## Run 24 stress 8.137694e-05
## ... Procrustes: rmse 7.900875e-05 max resid 0.0001681562
## ... Similar to previous best
## Run 25 stress 9.613402e-05
## ... Procrustes: rmse 0.0001954079 max resid 0.0003084112
## ... Similar to previous best
## Run 26 stress 9.751477e-05
## ... Procrustes: rmse 0.0001782074 max resid 0.0002726834
## ... Similar to previous best
## Run 27 stress 9.941753e-05
## ... Procrustes: rmse 0.0001815002 max resid 0.000274535
## ... Similar to previous best
## Run 28 stress 9.712703e-05
## ... Procrustes: rmse 0.0001909755 max resid 0.0003001171
## ... Similar to previous best
## Run 29 stress 9.598096e-05
## ... Procrustes: rmse 0.000168478 max resid 0.0002800472
## ... Similar to previous best
## Run 30 stress 8.919522e-05
## ... Procrustes: rmse 0.0001493558 max resid 0.0002599304
## ... Similar to previous best
## Run 31 stress 9.788033e-05
## ... Procrustes: rmse 0.0002163842 max resid 0.0003144053
## ... Similar to previous best
## Run 32 stress 9.781457e-05
## ... Procrustes: rmse 0.0001655937 max resid 0.0002846934
## ... Similar to previous best
## Run 33 stress 9.705978e-05
## ... Procrustes: rmse 0.0001914816 max resid 0.0003124464
## ... Similar to previous best
## Run 34 stress 9.74657e-05
## ... Procrustes: rmse 0.0001952112 max resid 0.0004031115
## ... Similar to previous best
## Run 35 stress 8.495111e-05
## ... Procrustes: rmse 0.0001549849 max resid 0.0002481814
## ... Similar to previous best
## Run 36 stress 9.599517e-05
## ... Procrustes: rmse 0.0001497556 max resid 0.0002625024
## ... Similar to previous best
## Run 37 stress 8.047476e-05
## ... New best solution
## ... Procrustes: rmse 0.0001316529 max resid 0.0003171344
## ... Similar to previous best
## Run 38 stress 9.931704e-05
## ... Procrustes: rmse 0.0001786729 max resid 0.0003410153
## ... Similar to previous best
## Run 39 stress 9.457163e-05
## ... Procrustes: rmse 0.000176875 max resid 0.0003870977
## ... Similar to previous best
## Run 40 stress 9.9266e-05
## ... Procrustes: rmse 0.0002074735 max resid 0.000394718
## ... Similar to previous best
## Run 41 stress 9.980356e-05
## ... Procrustes: rmse 0.0002205637 max resid 0.0004146662
## ... Similar to previous best
## Run 42 stress 9.852857e-05
## ... Procrustes: rmse 0.0001865672 max resid 0.0003469429
## ... Similar to previous best
## Run 43 stress 9.881635e-05
## ... Procrustes: rmse 0.0001138065 max resid 0.0001915559
## ... Similar to previous best
## Run 44 stress 9.521463e-05
## ... Procrustes: rmse 0.0001653009 max resid 0.0002942017
## ... Similar to previous best
## Run 45 stress 8.881287e-05
## ... Procrustes: rmse 0.0001528444 max resid 0.0002836054
## ... Similar to previous best
## Run 46 stress 9.355816e-05
## ... Procrustes: rmse 0.0001308011 max resid 0.0002599294
## ... Similar to previous best
## Run 47 stress 9.588184e-05
## ... Procrustes: rmse 0.0001993539 max resid 0.0003899248
## ... Similar to previous best
## Run 48 stress 9.698567e-05
## ... Procrustes: rmse 0.0002090978 max resid 0.0004048869
## ... Similar to previous best
## Run 49 stress 8.49283e-05
## ... Procrustes: rmse 0.0001227485 max resid 0.0002621081
## ... Similar to previous best
## Run 50 stress 9.528076e-05
## ... Procrustes: rmse 0.0001865091 max resid 0.0003563759
## ... Similar to previous best
## Run 51 stress 9.50318e-05
## ... Procrustes: rmse 0.000214693 max resid 0.0003097155
## ... Similar to previous best
## Run 52 stress 9.864957e-05
## ... Procrustes: rmse 7.852421e-05 max resid 0.0001643219
## ... Similar to previous best
## Run 53 stress 9.658313e-05
## ... Procrustes: rmse 0.0001749757 max resid 0.0002944841
## ... Similar to previous best
## Run 54 stress 9.699716e-05
## ... Procrustes: rmse 0.0001507418 max resid 0.0002807991
## ... Similar to previous best
## Run 55 stress 9.32581e-05
## ... Procrustes: rmse 0.0001313621 max resid 0.0002872956
## ... Similar to previous best
## Run 56 stress 9.80536e-05
## ... Procrustes: rmse 0.0001382728 max resid 0.0002475549
## ... Similar to previous best
## Run 57 stress 9.497487e-05
## ... Procrustes: rmse 0.0001467458 max resid 0.000281073
## ... Similar to previous best
## Run 58 stress 9.956962e-05
## ... Procrustes: rmse 0.0001677289 max resid 0.0003576907
## ... Similar to previous best
## Run 59 stress 9.456578e-05
## ... Procrustes: rmse 0.0002024997 max resid 0.0003943128
## ... Similar to previous best
## Run 60 stress 9.532828e-05
## ... Procrustes: rmse 0.0001906505 max resid 0.0003540351
## ... Similar to previous best
## Run 61 stress 9.288692e-05
## ... Procrustes: rmse 0.0002142741 max resid 0.0003086579
## ... Similar to previous best
## Run 62 stress 9.365513e-05
## ... Procrustes: rmse 9.629852e-05 max resid 0.0001999456
## ... Similar to previous best
## Run 63 stress 8.604398e-05
## ... Procrustes: rmse 0.0001899444 max resid 0.0003659412
## ... Similar to previous best
## Run 64 stress 8.930571e-05
## ... Procrustes: rmse 9.75541e-05 max resid 0.0001737136
## ... Similar to previous best
## Run 65 stress 9.450652e-05
## ... Procrustes: rmse 0.000197548 max resid 0.0003996987
## ... Similar to previous best
## Run 66 stress 8.899475e-05
## ... Procrustes: rmse 0.0001683803 max resid 0.0003397223
## ... Similar to previous best
## Run 67 stress 9.576681e-05
## ... Procrustes: rmse 0.0001867573 max resid 0.000309956
## ... Similar to previous best
## Run 68 stress 9.760111e-05
## ... Procrustes: rmse 0.0002164877 max resid 0.000410266
## ... Similar to previous best
## Run 69 stress 9.299233e-05
## ... Procrustes: rmse 0.0001614377 max resid 0.000294574
## ... Similar to previous best
## Run 70 stress 9.57717e-05
## ... Procrustes: rmse 6.499181e-05 max resid 0.0001593769
## ... Similar to previous best
## Run 71 stress 8.511255e-05
## ... Procrustes: rmse 0.0001835057 max resid 0.0003761058
## ... Similar to previous best
## Run 72 stress 9.852994e-05
## ... Procrustes: rmse 0.000114133 max resid 0.000188846
## ... Similar to previous best
## Run 73 stress 9.636598e-05
## ... Procrustes: rmse 0.0001846873 max resid 0.0003569318
## ... Similar to previous best
## Run 74 stress 9.43718e-05
## ... Procrustes: rmse 0.0002037909 max resid 0.0003968819
## ... Similar to previous best
## Run 75 stress 9.621628e-05
## ... Procrustes: rmse 0.0002201752 max resid 0.0003413753
## ... Similar to previous best
## Run 76 stress 8.924168e-05
## ... Procrustes: rmse 0.0001728758 max resid 0.0003380219
## ... Similar to previous best
## Run 77 stress 9.920342e-05
## ... Procrustes: rmse 0.0002147125 max resid 0.0004113574
## ... Similar to previous best
## Run 78 stress 8.700294e-05
## ... Procrustes: rmse 0.0002034663 max resid 0.0002979376
## ... Similar to previous best
## Run 79 stress 9.896758e-05
## ... Procrustes: rmse 0.0002144522 max resid 0.0004051056
## ... Similar to previous best
## Run 80 stress 9.317783e-05
## ... Procrustes: rmse 0.0001102257 max resid 0.0001844143
## ... Similar to previous best
## Run 81 stress 8.85321e-05
## ... Procrustes: rmse 0.0001274794 max resid 0.0002683305
## ... Similar to previous best
## Run 82 stress 9.60468e-05
## ... Procrustes: rmse 0.0001161546 max resid 0.0001887846
## ... Similar to previous best
## Run 83 stress 9.289036e-05
## ... Procrustes: rmse 9.971872e-05 max resid 0.0001762291
## ... Similar to previous best
## Run 84 stress 9.143646e-05
## ... Procrustes: rmse 0.0001994652 max resid 0.0003918693
## ... Similar to previous best
## Run 85 stress 9.399379e-05
## ... Procrustes: rmse 0.000174663 max resid 0.0003733766
## ... Similar to previous best
## Run 86 stress 9.859214e-05
## ... Procrustes: rmse 0.0001653936 max resid 0.0002913269
## ... Similar to previous best
## Run 87 stress 9.355423e-05
## ... Procrustes: rmse 0.000208297 max resid 0.0004020388
## ... Similar to previous best
## Run 88 stress 9.88448e-05
## ... Procrustes: rmse 0.0002115594 max resid 0.0004077042
## ... Similar to previous best
## Run 89 stress 9.311898e-05
## ... Procrustes: rmse 0.0001403462 max resid 0.0002966942
## ... Similar to previous best
## Run 90 stress 9.739987e-05
## ... Procrustes: rmse 0.0001814549 max resid 0.0003377949
## ... Similar to previous best
## Run 91 stress 9.810593e-05
## ... Procrustes: rmse 0.0001394223 max resid 0.000265711
## ... Similar to previous best
## Run 92 stress 9.838217e-05
## ... Procrustes: rmse 0.0001738172 max resid 0.0002932993
## ... Similar to previous best
## Run 93 stress 9.093251e-05
## ... Procrustes: rmse 0.0001590226 max resid 0.0002378459
## ... Similar to previous best
## Run 94 stress 9.797408e-05
## ... Procrustes: rmse 0.0002141483 max resid 0.0004052919
## ... Similar to previous best
## Run 95 stress 9.624738e-05
## ... Procrustes: rmse 0.0001726529 max resid 0.0003693958
## ... Similar to previous best
## Run 96 stress 8.736752e-05
## ... Procrustes: rmse 0.0001260944 max resid 0.0002669327
## ... Similar to previous best
## Run 97 stress 9.913115e-05
## ... Procrustes: rmse 0.0001717984 max resid 0.000303429
## ... Similar to previous best
## Run 98 stress 8.356296e-05
## ... Procrustes: rmse 9.935563e-05 max resid 0.0002171429
## ... Similar to previous best
## Run 99 stress 9.847301e-05
## ... Procrustes: rmse 0.0002157581 max resid 0.0004135892
## ... Similar to previous best
## Run 100 stress 9.997845e-05
## ... Procrustes: rmse 0.0002128409 max resid 0.0004037051
## ... Similar to previous best
## Run 101 stress 9.411409e-05
## ... Procrustes: rmse 0.0001771123 max resid 0.0003019474
## ... Similar to previous best
## Run 102 stress 9.278171e-05
## ... Procrustes: rmse 0.0001329356 max resid 0.0002732758
## ... Similar to previous best
## Run 103 stress 9.819705e-05
## ... Procrustes: rmse 0.0002332526 max resid 0.0004260052
## ... Similar to previous best
## Run 104 stress 9.764851e-05
## ... Procrustes: rmse 0.0001683509 max resid 0.0003000656
## ... Similar to previous best
## Run 105 stress 9.702199e-05
## ... Procrustes: rmse 0.0002112348 max resid 0.000391549
## ... Similar to previous best
## Run 106 stress 9.857292e-05
## ... Procrustes: rmse 0.0001712508 max resid 0.0003046404
## ... Similar to previous best
## Run 107 stress 9.043771e-05
## ... Procrustes: rmse 0.000103053 max resid 0.0001739029
## ... Similar to previous best
## Run 108 stress 9.716275e-05
## ... Procrustes: rmse 0.000209391 max resid 0.0004019824
## ... Similar to previous best
## Run 109 stress 9.662108e-05
## ... Procrustes: rmse 0.0001169391 max resid 0.0001913872
## ... Similar to previous best
## Run 110 stress 9.705841e-05
## ... Procrustes: rmse 0.0002010646 max resid 0.0003867611
## ... Similar to previous best
## Run 111 stress 9.967559e-05
## ... Procrustes: rmse 0.0002177259 max resid 0.0004102581
## ... Similar to previous best
## Run 112 stress 9.819769e-05
## ... Procrustes: rmse 0.0001712365 max resid 0.0003015962
## ... Similar to previous best
## Run 113 stress 8.315298e-05
## ... Procrustes: rmse 0.0001881227 max resid 0.000372244
## ... Similar to previous best
## Run 114 stress 9.42395e-05
## ... Procrustes: rmse 0.0001824735 max resid 0.0003496531
## ... Similar to previous best
## Run 115 stress 9.730022e-05
## ... Procrustes: rmse 0.0002216518 max resid 0.0003169278
## ... Similar to previous best
## Run 116 stress 9.634058e-05
## ... Procrustes: rmse 0.0002059541 max resid 0.0003870336
## ... Similar to previous best
## Run 117 stress 9.734319e-05
## ... Procrustes: rmse 0.0001625889 max resid 0.0002748984
## ... Similar to previous best
## Run 118 stress 7.133892e-05
## ... New best solution
## ... Procrustes: rmse 0.0001065925 max resid 0.0002546197
## ... Similar to previous best
## Run 119 stress 9.7916e-05
## ... Procrustes: rmse 0.0001938948 max resid 0.0003064627
## ... Similar to previous best
## Run 120 stress 9.422314e-05
## ... Procrustes: rmse 0.00018419 max resid 0.0003001541
## ... Similar to previous best
## Run 121 stress 9.388915e-05
## ... Procrustes: rmse 0.0001712055 max resid 0.000292639
## ... Similar to previous best
## Run 122 stress 9.778155e-05
## ... Procrustes: rmse 0.0001516088 max resid 0.0002551109
## ... Similar to previous best
## Run 123 stress 9.605624e-05
## ... Procrustes: rmse 0.0001726771 max resid 0.0002660099
## ... Similar to previous best
## Run 124 stress 9.924771e-05
## ... Procrustes: rmse 0.0001445872 max resid 0.000253415
## ... Similar to previous best
## Run 125 stress 8.438688e-05
## ... Procrustes: rmse 0.0001507556 max resid 0.0002693028
## ... Similar to previous best
## Run 126 stress 9.406553e-05
## ... Procrustes: rmse 0.0001159355 max resid 0.0002246903
## ... Similar to previous best
## Run 127 stress 9.719069e-05
## ... Procrustes: rmse 0.0001502066 max resid 0.0002230682
## ... Similar to previous best
## Run 128 stress 9.958222e-05
## ... Procrustes: rmse 9.175313e-05 max resid 0.0002163784
## ... Similar to previous best
## Run 129 stress 9.443625e-05
## ... Procrustes: rmse 0.0001636795 max resid 0.0003128253
## ... Similar to previous best
## Run 130 stress 9.718798e-05
## ... Procrustes: rmse 0.0001747132 max resid 0.0002992996
## ... Similar to previous best
## Run 131 stress 7.49201e-05
## ... Procrustes: rmse 0.0001087371 max resid 0.0002198579
## ... Similar to previous best
## Run 132 stress 9.673698e-05
## ... Procrustes: rmse 0.0001366153 max resid 0.000240198
## ... Similar to previous best
## Run 133 stress 9.247814e-05
## ... Procrustes: rmse 0.0002009961 max resid 0.0003066986
## ... Similar to previous best
## Run 134 stress 9.900477e-05
## ... Procrustes: rmse 0.0001447377 max resid 0.0002585225
## ... Similar to previous best
## Run 135 stress 9.770068e-05
## ... Procrustes: rmse 0.0001522042 max resid 0.0002550112
## ... Similar to previous best
## Run 136 stress 9.741872e-05
## ... Procrustes: rmse 0.0001781989 max resid 0.0003003425
## ... Similar to previous best
## Run 137 stress 9.56598e-05
## ... Procrustes: rmse 0.0001332902 max resid 0.0001927633
## ... Similar to previous best
## Run 138 stress 9.947022e-05
## ... Procrustes: rmse 0.0001444916 max resid 0.0002559937
## ... Similar to previous best
## Run 139 stress 9.434095e-05
## ... Procrustes: rmse 0.0001360573 max resid 0.0002471295
## ... Similar to previous best
## Run 140 stress 9.066083e-05
## ... Procrustes: rmse 0.0001676857 max resid 0.0002897838
## ... Similar to previous best
## Run 141 stress 9.48704e-05
## ... Procrustes: rmse 0.0001449238 max resid 0.0003360067
## ... Similar to previous best
## Run 142 stress 9.376319e-05
## ... Procrustes: rmse 0.0001985386 max resid 0.0003099228
## ... Similar to previous best
## Run 143 stress 9.716387e-05
## ... Procrustes: rmse 0.0001520133 max resid 0.0002542088
## ... Similar to previous best
## Run 144 stress 6.478295e-05
## ... New best solution
## ... Procrustes: rmse 0.0001004449 max resid 0.0001669617
## ... Similar to previous best
## Run 145 stress 9.569718e-05
## ... Procrustes: rmse 0.0001751201 max resid 0.0002625806
## ... Similar to previous best
## Run 146 stress 9.856185e-05
## ... Procrustes: rmse 0.000209856 max resid 0.0002990097
## ... Similar to previous best
## Run 147 stress 9.633713e-05
## ... Procrustes: rmse 0.000181604 max resid 0.0002708795
## ... Similar to previous best
## Run 148 stress 9.5619e-05
## ... Procrustes: rmse 0.000173298 max resid 0.0002393971
## ... Similar to previous best
## Run 149 stress 9.439623e-05
## ... Procrustes: rmse 0.0001644833 max resid 0.0002687246
## ... Similar to previous best
## Run 150 stress 9.943952e-05
## ... Procrustes: rmse 0.000167542 max resid 0.000309174
## ... Similar to previous best
## Run 151 stress 9.433921e-05
## ... Procrustes: rmse 0.0001708988 max resid 0.0003093583
## ... Similar to previous best
## Run 152 stress 9.95194e-05
## ... Procrustes: rmse 0.0001825381 max resid 0.0003240506
## ... Similar to previous best
## Run 153 stress 9.971397e-05
## ... Procrustes: rmse 0.0001890655 max resid 0.0002812172
## ... Similar to previous best
## Run 154 stress 9.815245e-05
## ... Procrustes: rmse 0.0001649722 max resid 0.000287431
## ... Similar to previous best
## Run 155 stress 9.426072e-05
## ... Procrustes: rmse 0.0001255423 max resid 0.0002221185
## ... Similar to previous best
## Run 156 stress 9.47884e-05
## ... Procrustes: rmse 0.0001712848 max resid 0.0003075444
## ... Similar to previous best
## Run 157 stress 9.608849e-05
## ... Procrustes: rmse 0.0001752976 max resid 0.0003138597
## ... Similar to previous best
## Run 158 stress 9.922737e-05
## ... Procrustes: rmse 0.0001899112 max resid 0.0002787135
## ... Similar to previous best
## Run 159 stress 9.543445e-05
## ... Procrustes: rmse 0.0001660207 max resid 0.000266285
## ... Similar to previous best
## Run 160 stress 9.767552e-05
## ... Procrustes: rmse 0.0001698036 max resid 0.0002362495
## ... Similar to previous best
## Run 161 stress 9.691756e-05
## ... Procrustes: rmse 0.0001741159 max resid 0.0003143254
## ... Similar to previous best
## Run 162 stress 9.540591e-05
## ... Procrustes: rmse 0.000177177 max resid 0.0002813876
## ... Similar to previous best
## Run 163 stress 9.609043e-05
## ... Procrustes: rmse 0.0001314587 max resid 0.0002091217
## ... Similar to previous best
## Run 164 stress 6.093316e-05
## ... New best solution
## ... Procrustes: rmse 0.0001099607 max resid 0.0002440023
## ... Similar to previous best
## Run 165 stress 9.577316e-05
## ... Procrustes: rmse 0.0001056195 max resid 0.0002133546
## ... Similar to previous best
## Run 166 stress 9.858735e-05
## ... Procrustes: rmse 0.00018138 max resid 0.0003164366
## ... Similar to previous best
## Run 167 stress 9.412705e-05
## ... Procrustes: rmse 0.0001759338 max resid 0.0003490775
## ... Similar to previous best
## Run 168 stress 9.249174e-05
## ... Procrustes: rmse 5.440871e-05 max resid 8.189154e-05
## ... Similar to previous best
## Run 169 stress 9.575889e-05
## ... Procrustes: rmse 0.0001900534 max resid 0.0003238485
## ... Similar to previous best
## Run 170 stress 7.029048e-05
## ... Procrustes: rmse 0.0001351741 max resid 0.0002840152
## ... Similar to previous best
## Run 171 stress 9.520087e-05
## ... Procrustes: rmse 0.0001850973 max resid 0.0002635348
## ... Similar to previous best
## Run 172 stress 9.785101e-05
## ... Procrustes: rmse 0.000181222 max resid 0.0003202555
## ... Similar to previous best
## Run 173 stress 9.916433e-05
## ... Procrustes: rmse 0.0001771678 max resid 0.000383521
## ... Similar to previous best
## Run 174 stress 9.301833e-05
## ... Procrustes: rmse 0.0001513406 max resid 0.0002880673
## ... Similar to previous best
## Run 175 stress 9.023926e-05
## ... Procrustes: rmse 7.221175e-05 max resid 0.0001086768
## ... Similar to previous best
## Run 176 stress 7.335725e-05
## ... Procrustes: rmse 0.0001388631 max resid 0.0002861311
## ... Similar to previous best
## Run 177 stress 9.994893e-05
## ... Procrustes: rmse 0.0001793952 max resid 0.0003819191
## ... Similar to previous best
## Run 178 stress 9.052671e-05
## ... Procrustes: rmse 9.684777e-05 max resid 0.000176965
## ... Similar to previous best
## Run 179 stress 9.585914e-05
## ... Procrustes: rmse 0.000208479 max resid 0.0004082683
## ... Similar to previous best
## Run 180 stress 8.586177e-05
## ... Procrustes: rmse 0.0001541002 max resid 0.0003360505
## ... Similar to previous best
## Run 181 stress 9.903843e-05
## ... Procrustes: rmse 8.555554e-05 max resid 0.0001271458
## ... Similar to previous best
## Run 182 stress 9.26823e-05
## ... Procrustes: rmse 0.0001316093 max resid 0.00027914
## ... Similar to previous best
## Run 183 stress 9.766883e-05
## ... Procrustes: rmse 0.0001930098 max resid 0.0003070835
## ... Similar to previous best
## Run 184 stress 8.827494e-05
## ... Procrustes: rmse 6.766997e-05 max resid 0.0001020943
## ... Similar to previous best
## Run 185 stress 9.145722e-05
## ... Procrustes: rmse 0.0001812097 max resid 0.0002954259
## ... Similar to previous best
## Run 186 stress 9.631833e-05
## ... Procrustes: rmse 0.0001638116 max resid 0.000366214
## ... Similar to previous best
## Run 187 stress 9.982316e-05
## ... Procrustes: rmse 0.0002050489 max resid 0.0003175541
## ... Similar to previous best
## Run 188 stress 9.255161e-05
## ... Procrustes: rmse 0.0001056699 max resid 0.0001813904
## ... Similar to previous best
## Run 189 stress 9.065116e-05
## ... Procrustes: rmse 0.0001606798 max resid 0.0003700162
## ... Similar to previous best
## Run 190 stress 9.984915e-05
## ... Procrustes: rmse 0.0001501954 max resid 0.0003488
## ... Similar to previous best
## Run 191 stress 9.95301e-05
## ... Procrustes: rmse 8.233034e-05 max resid 0.0001343575
## ... Similar to previous best
## Run 192 stress 9.674278e-05
## ... Procrustes: rmse 0.0002097614 max resid 0.0004083638
## ... Similar to previous best
## Run 193 stress 9.909697e-05
## ... Procrustes: rmse 7.801798e-05 max resid 0.0001040613
## ... Similar to previous best
## Run 194 stress 9.989604e-05
## ... Procrustes: rmse 0.0002166092 max resid 0.0004181489
## ... Similar to previous best
## Run 195 stress 9.414406e-05
## ... Procrustes: rmse 0.0001700203 max resid 0.0002562637
## ... Similar to previous best
## Run 196 stress 9.810494e-05
## ... Procrustes: rmse 8.933915e-05 max resid 0.0001335992
## ... Similar to previous best
## Run 197 stress 9.683159e-05
## ... Procrustes: rmse 0.0002102965 max resid 0.0004093869
## ... Similar to previous best
## Run 198 stress 8.542887e-05
## ... Procrustes: rmse 0.0001377556 max resid 0.0002705948
## ... Similar to previous best
## Run 199 stress 9.471475e-05
## ... Procrustes: rmse 0.0001395959 max resid 0.0002876721
## ... Similar to previous best
## Run 200 stress 9.639319e-05
## ... Procrustes: rmse 0.0001902961 max resid 0.0003238857
## ... Similar to previous best
## Run 201 stress 9.848791e-05
## ... Procrustes: rmse 0.0001862624 max resid 0.0003602308
## ... Similar to previous best
## Run 202 stress 9.786057e-05
## ... Procrustes: rmse 0.0001383271 max resid 0.0002841842
## ... Similar to previous best
## Run 203 stress 9.702185e-05
## ... Procrustes: rmse 0.0001476373 max resid 0.0003035513
## ... Similar to previous best
## Run 204 stress 9.45466e-05
## ... Procrustes: rmse 0.0001692246 max resid 0.0003707369
## ... Similar to previous best
## Run 205 stress 9.815412e-05
## ... Procrustes: rmse 0.0002122656 max resid 0.0004135663
## ... Similar to previous best
## Run 206 stress 9.137484e-05
## ... Procrustes: rmse 0.0001340686 max resid 0.0002831459
## ... Similar to previous best
## Run 207 stress 9.864898e-05
## ... Procrustes: rmse 0.0001445976 max resid 0.0002211948
## ... Similar to previous best
## Run 208 stress 9.732649e-05
## ... Procrustes: rmse 0.0001452494 max resid 0.0002785138
## ... Similar to previous best
## Run 209 stress 9.808537e-05
## ... Procrustes: rmse 0.00017807 max resid 0.0003144552
## ... Similar to previous best
## Run 210 stress 9.616264e-05
## ... Procrustes: rmse 0.0001731616 max resid 0.0002612108
## ... Similar to previous best
## Run 211 stress 9.994617e-05
## ... Procrustes: rmse 0.0001806136 max resid 0.0002700119
## ... Similar to previous best
## Run 212 stress 9.491968e-05
## ... Procrustes: rmse 0.0001364872 max resid 0.0002705228
## ... Similar to previous best
## Run 213 stress 9.690367e-05
## ... Procrustes: rmse 8.713039e-05 max resid 0.0001363943
## ... Similar to previous best
## Run 214 stress 9.204142e-05
## ... Procrustes: rmse 0.0001641414 max resid 0.0003639153
## ... Similar to previous best
## Run 215 stress 9.94686e-05
## ... Procrustes: rmse 0.0001575648 max resid 0.0002917066
## ... Similar to previous best
## Run 216 stress 9.761042e-05
## ... Procrustes: rmse 0.0001630186 max resid 0.0002407886
## ... Similar to previous best
## Run 217 stress 9.935223e-05
## ... Procrustes: rmse 0.0002132202 max resid 0.0004125369
## ... Similar to previous best
## Run 218 stress 8.852838e-05
## ... Procrustes: rmse 6.266862e-05 max resid 9.376996e-05
## ... Similar to previous best
## Run 219 stress 9.563368e-05
## ... Procrustes: rmse 0.0001862794 max resid 0.0003480467
## ... Similar to previous best
## Run 220 stress 9.665134e-05
## ... Procrustes: rmse 8.976841e-05 max resid 0.0001482775
## ... Similar to previous best
## Run 221 stress 9.030292e-05
## ... Procrustes: rmse 0.0001062251 max resid 0.0001882333
## ... Similar to previous best
## Run 222 stress 9.617672e-05
## ... Procrustes: rmse 8.527839e-05 max resid 0.0001166376
## ... Similar to previous best
## Run 223 stress 9.337265e-05
## ... Procrustes: rmse 0.0001640342 max resid 0.0003703393
## ... Similar to previous best
## Run 224 stress 9.897746e-05
## ... Procrustes: rmse 0.0001378459 max resid 0.0002055762
## ... Similar to previous best
## Run 225 stress 9.721428e-05
## ... Procrustes: rmse 0.0001383548 max resid 0.0002614615
## ... Similar to previous best
## Run 226 stress 9.519014e-05
## ... Procrustes: rmse 0.000167638 max resid 0.0003549047
## ... Similar to previous best
## Run 227 stress 9.217048e-05
## ... Procrustes: rmse 0.0001939666 max resid 0.0002979776
## ... Similar to previous best
## Run 228 stress 9.316262e-05
## ... Procrustes: rmse 0.0001958077 max resid 0.0003009132
## ... Similar to previous best
## Run 229 stress 9.727566e-05
## ... Procrustes: rmse 7.711844e-05 max resid 0.0001126741
## ... Similar to previous best
## Run 230 stress 9.906234e-05
## ... Procrustes: rmse 0.0001776073 max resid 0.000382303
## ... Similar to previous best
## Run 231 stress 8.919357e-05
## ... Procrustes: rmse 0.0001301059 max resid 0.0002766554
## ... Similar to previous best
## Run 232 stress 9.845351e-05
## ... Procrustes: rmse 0.0002075692 max resid 0.0003123867
## ... Similar to previous best
## Run 233 stress 9.842938e-05
## ... Procrustes: rmse 0.0001351059 max resid 0.0002829482
## ... Similar to previous best
## Run 234 stress 8.908371e-05
## ... Procrustes: rmse 0.0001441568 max resid 0.0002784204
## ... Similar to previous best
## Run 235 stress 8.789872e-05
## ... Procrustes: rmse 7.29729e-05 max resid 0.0001453527
## ... Similar to previous best
## Run 236 stress 9.066367e-05
## ... Procrustes: rmse 0.0001027613 max resid 0.0001884808
## ... Similar to previous best
## Run 237 stress 8.815407e-05
## ... Procrustes: rmse 0.0001613188 max resid 0.0002937716
## ... Similar to previous best
## Run 238 stress 8.232904e-05
## ... Procrustes: rmse 0.0001600724 max resid 0.0003474257
## ... Similar to previous best
## Run 239 stress 9.643298e-05
## ... Procrustes: rmse 8.505089e-05 max resid 0.0001272131
## ... Similar to previous best
## Run 240 stress 7.725777e-05
## ... Procrustes: rmse 0.0001343733 max resid 0.0002104874
## ... Similar to previous best
## Run 241 stress 9.884858e-05
## ... Procrustes: rmse 0.0001792229 max resid 0.0002684442
## ... Similar to previous best
## Run 242 stress 9.110857e-05
## ... Procrustes: rmse 0.0001580052 max resid 0.0002379016
## ... Similar to previous best
## Run 243 stress 9.65178e-05
## ... Procrustes: rmse 0.0001340793 max resid 0.0002824655
## ... Similar to previous best
## Run 244 stress 9.824745e-05
## ... Procrustes: rmse 0.0001242476 max resid 0.0002720648
## ... Similar to previous best
## Run 245 stress 9.555113e-05
## ... Procrustes: rmse 0.0001559708 max resid 0.0002880642
## ... Similar to previous best
## Run 246 stress 9.692951e-05
## ... Procrustes: rmse 0.0001950653 max resid 0.0003000802
## ... Similar to previous best
## Run 247 stress 9.369871e-05
## ... Procrustes: rmse 0.0001125955 max resid 0.0002546192
## ... Similar to previous best
## Run 248 stress 9.95776e-05
## ... Procrustes: rmse 0.000211441 max resid 0.0004119085
## ... Similar to previous best
## Run 249 stress 9.978512e-05
## ... Procrustes: rmse 0.0001789701 max resid 0.0003472866
## ... Similar to previous best
## Run 250 stress 9.742484e-05
## ... Procrustes: rmse 0.0001067469 max resid 0.000215352
## ... Similar to previous best
## Run 251 stress 9.70934e-05
## ... Procrustes: rmse 0.0001745242 max resid 0.0003758538
## ... Similar to previous best
## Run 252 stress 9.953681e-05
## ... Procrustes: rmse 0.0002020915 max resid 0.0003144697
## ... Similar to previous best
## Run 253 stress 9.978806e-05
## ... Procrustes: rmse 8.636001e-05 max resid 0.0001211818
## ... Similar to previous best
## Run 254 stress 9.715337e-05
## ... Procrustes: rmse 0.0001642705 max resid 0.0002436541
## ... Similar to previous best
## Run 255 stress 9.0613e-05
## ... Procrustes: rmse 0.0001913884 max resid 0.0002965831
## ... Similar to previous best
## Run 256 stress 9.023775e-05
## ... Procrustes: rmse 0.0001846691 max resid 0.0002972936
## ... Similar to previous best
## Run 257 stress 9.548876e-05
## ... Procrustes: rmse 8.439369e-05 max resid 0.0001261588
## ... Similar to previous best
## Run 258 stress 9.452489e-05
## ... Procrustes: rmse 0.0001853848 max resid 0.0003785733
## ... Similar to previous best
## Run 259 stress 8.930189e-05
## ... Procrustes: rmse 0.0001223704 max resid 0.0002720851
## ... Similar to previous best
## Run 260 stress 9.938373e-05
## ... Procrustes: rmse 0.0001394141 max resid 0.000282937
## ... Similar to previous best
## Run 261 stress 9.859782e-05
## ... Procrustes: rmse 0.0001983744 max resid 0.0003110604
## ... Similar to previous best
## Run 262 stress 9.682683e-05
## ... Procrustes: rmse 0.0001737424 max resid 0.0003760314
## ... Similar to previous best
## Run 263 stress 9.850561e-05
## ... Procrustes: rmse 9.151926e-05 max resid 0.0001336777
## ... Similar to previous best
## Run 264 stress 9.593446e-05
## ... Procrustes: rmse 0.0001186417 max resid 0.0002026338
## ... Similar to previous best
## Run 265 stress 8.805893e-05
## ... Procrustes: rmse 0.0001779271 max resid 0.0003638781
## ... Similar to previous best
## Run 266 stress 8.95924e-05
## ... Procrustes: rmse 6.864765e-05 max resid 0.0001045407
## ... Similar to previous best
## Run 267 stress 9.99078e-05
## ... Procrustes: rmse 0.0002027203 max resid 0.000348209
## ... Similar to previous best
## Run 268 stress 8.868821e-05
## ... Procrustes: rmse 0.000107469 max resid 0.0002904491
## ... Similar to previous best
## Run 269 stress 9.826966e-05
## ... Procrustes: rmse 0.0001939581 max resid 0.0003076688
## ... Similar to previous best
## Run 270 stress 9.695433e-05
## ... Procrustes: rmse 0.0001783977 max resid 0.0003162576
## ... Similar to previous best
## Run 271 stress 9.382642e-05
## ... Procrustes: rmse 0.0001596477 max resid 0.0003121032
## ... Similar to previous best
## Run 272 stress 9.250347e-05
## ... Procrustes: rmse 7.498992e-05 max resid 0.0001133578
## ... Similar to previous best
## Run 273 stress 9.867757e-05
## ... Procrustes: rmse 0.0001826593 max resid 0.0002857437
## ... Similar to previous best
## Run 274 stress 9.892953e-05
## ... Procrustes: rmse 0.0002022377 max resid 0.0003074436
## ... Similar to previous best
## Run 275 stress 9.894395e-05
## ... Procrustes: rmse 9.119997e-05 max resid 0.0001310863
## ... Similar to previous best
## Run 276 stress 9.272054e-05
## ... Procrustes: rmse 0.0001842438 max resid 0.0003443769
## ... Similar to previous best
## Run 277 stress 9.32195e-05
## ... Procrustes: rmse 0.0001971618 max resid 0.0003949427
## ... Similar to previous best
## Run 278 stress 7.857267e-05
## ... Procrustes: rmse 0.0001524939 max resid 0.0002954467
## ... Similar to previous best
## Run 279 stress 8.856891e-05
## ... Procrustes: rmse 0.0001580514 max resid 0.00036899
## ... Similar to previous best
## Run 280 stress 9.761354e-05
## ... Procrustes: rmse 0.0001740187 max resid 0.0003752507
## ... Similar to previous best
## Run 281 stress 9.649101e-05
## ... Procrustes: rmse 0.0001501365 max resid 0.0002816904
## ... Similar to previous best
## Run 282 stress 9.782469e-05
## ... Procrustes: rmse 0.0001753778 max resid 0.0002631359
## ... Similar to previous best
## Run 283 stress 9.761624e-05
## ... Procrustes: rmse 0.0001612246 max resid 0.0002658206
## ... Similar to previous best
## Run 284 stress 9.76436e-05
## ... Procrustes: rmse 0.0001696016 max resid 0.0003676179
## ... Similar to previous best
## Run 285 stress 9.017158e-05
## ... Procrustes: rmse 0.0001018902 max resid 0.0001660503
## ... Similar to previous best
## Run 286 stress 9.425042e-05
## ... Procrustes: rmse 8.07338e-05 max resid 0.0001209334
## ... Similar to previous best
## Run 287 stress 9.237203e-05
## ... Procrustes: rmse 0.0001350523 max resid 0.0002782397
## ... Similar to previous best
## Run 288 stress 7.399322e-05
## ... Procrustes: rmse 0.0001112353 max resid 0.0002295932
## ... Similar to previous best
## Run 289 stress 9.302562e-05
## ... Procrustes: rmse 0.0001245062 max resid 0.0002358014
## ... Similar to previous best
## Run 290 stress 9.19289e-05
## ... Procrustes: rmse 0.0001658632 max resid 0.0002519101
## ... Similar to previous best
## Run 291 stress 9.948126e-05
## ... Procrustes: rmse 0.0001096748 max resid 0.0002187481
## ... Similar to previous best
## Run 292 stress 0.2413829
## Run 293 stress 9.106325e-05
## ... Procrustes: rmse 0.0001585332 max resid 0.0003417617
## ... Similar to previous best
## Run 294 stress 0.2362213
## Run 295 stress 8.776582e-05
## ... Procrustes: rmse 0.0001554692 max resid 0.0002358077
## ... Similar to previous best
## Run 296 stress 9.971179e-05
## ... Procrustes: rmse 0.000194608 max resid 0.0003822728
## ... Similar to previous best
## Run 297 stress 8.8684e-05
## ... Procrustes: rmse 0.0001202957 max resid 0.0002665758
## ... Similar to previous best
## Run 298 stress 9.844289e-05
## ... Procrustes: rmse 0.0002076218 max resid 0.0003123815
## ... Similar to previous best
## Run 299 stress 9.527591e-05
## ... Procrustes: rmse 7.683521e-05 max resid 0.0001306921
## ... Similar to previous best
## Run 300 stress 9.635964e-05
## ... Procrustes: rmse 8.392412e-05 max resid 0.0001370699
## ... Similar to previous best
## Run 301 stress 8.788193e-05
## ... Procrustes: rmse 0.0001783962 max resid 0.000291938
## ... Similar to previous best
## Run 302 stress 9.389951e-05
## ... Procrustes: rmse 0.0001669844 max resid 0.0003484226
## ... Similar to previous best
## Run 303 stress 9.564134e-05
## ... Procrustes: rmse 0.0001864473 max resid 0.0003017745
## ... Similar to previous best
## Run 304 stress 9.353528e-05
## ... Procrustes: rmse 0.0001863876 max resid 0.0003475942
## ... Similar to previous best
## Run 305 stress 9.587573e-05
## ... Procrustes: rmse 0.0001608784 max resid 0.0002387535
## ... Similar to previous best
## Run 306 stress 9.842397e-05
## ... Procrustes: rmse 9.059614e-05 max resid 0.0001388117
## ... Similar to previous best
## Run 307 stress 9.834342e-05
## ... Procrustes: rmse 0.0001594874 max resid 0.0002947556
## ... Similar to previous best
## Run 308 stress 7.710227e-05
## ... Procrustes: rmse 0.0001103883 max resid 0.0002270064
## ... Similar to previous best
## Run 309 stress 9.10632e-05
## ... Procrustes: rmse 0.0001493198 max resid 0.0003222154
## ... Similar to previous best
## Run 310 stress 9.347536e-05
## ... Procrustes: rmse 0.0001978099 max resid 0.0003027538
## ... Similar to previous best
## Run 311 stress 9.653533e-05
## ... Procrustes: rmse 0.0002098494 max resid 0.0004095037
## ... Similar to previous best
## Run 312 stress 9.252941e-05
## ... Procrustes: rmse 0.0001752791 max resid 0.0003446363
## ... Similar to previous best
## Run 313 stress 9.550312e-05
## ... Procrustes: rmse 0.0001939011 max resid 0.0003076178
## ... Similar to previous best
## Run 314 stress 9.757537e-05
## ... Procrustes: rmse 0.0001068062 max resid 0.0002151611
## ... Similar to previous best
## Run 315 stress 0.2413829
## Run 316 stress 9.37239e-05
## ... Procrustes: rmse 0.0001436658 max resid 0.0002644796
## ... Similar to previous best
## Run 317 stress 9.764131e-05
## ... Procrustes: rmse 0.0001508454 max resid 0.0002363167
## ... Similar to previous best
## Run 318 stress 9.693641e-05
## ... Procrustes: rmse 0.0001493377 max resid 0.0002363617
## ... Similar to previous best
## Run 319 stress 9.788739e-05
## ... Procrustes: rmse 0.0001726819 max resid 0.0003756632
## ... Similar to previous best
## Run 320 stress 9.506552e-05
## ... Procrustes: rmse 0.0001474888 max resid 0.0002693228
## ... Similar to previous best
## Run 321 stress 8.565255e-05
## ... Procrustes: rmse 0.0001588115 max resid 0.0003009284
## ... Similar to previous best
## Run 322 stress 0.258082
## Run 323 stress 7.43926e-05
## ... Procrustes: rmse 0.0001168565 max resid 0.0002376107
## ... Similar to previous best
## Run 324 stress 9.909087e-05
## ... Procrustes: rmse 0.0001791767 max resid 0.0002698163
## ... Similar to previous best
## Run 325 stress 9.608e-05
## ... Procrustes: rmse 0.0001419138 max resid 0.0002893174
## ... Similar to previous best
## Run 326 stress 9.659751e-05
## ... Procrustes: rmse 0.0001940931 max resid 0.0003583606
## ... Similar to previous best
## Run 327 stress 7.832844e-05
## ... Procrustes: rmse 0.0001577321 max resid 0.0002699558
## ... Similar to previous best
## Run 328 stress 9.748012e-05
## ... Procrustes: rmse 0.0001956473 max resid 0.0003596681
## ... Similar to previous best
## Run 329 stress 8.980489e-05
## ... Procrustes: rmse 0.0001272191 max resid 0.0002573897
## ... Similar to previous best
## Run 330 stress 9.18488e-05
## ... Procrustes: rmse 7.208095e-05 max resid 0.000109712
## ... Similar to previous best
## Run 331 stress 9.74839e-05
## ... Procrustes: rmse 8.815276e-05 max resid 0.0001268098
## ... Similar to previous best
## Run 332 stress 9.504634e-05
## ... Procrustes: rmse 0.0001493556 max resid 0.0002763198
## ... Similar to previous best
## Run 333 stress 7.93571e-05
## ... Procrustes: rmse 0.0001415663 max resid 0.0003014607
## ... Similar to previous best
## Run 334 stress 9.332341e-05
## ... Procrustes: rmse 0.0001376883 max resid 0.0002866662
## ... Similar to previous best
## Run 335 stress 0.2412264
## Run 336 stress 9.928861e-05
## ... Procrustes: rmse 0.0001894097 max resid 0.0003495319
## ... Similar to previous best
## Run 337 stress 9.900622e-05
## ... Procrustes: rmse 0.0001964591 max resid 0.0003111688
## ... Similar to previous best
## Run 338 stress 8.77415e-05
## ... Procrustes: rmse 0.0001112715 max resid 0.0002596486
## ... Similar to previous best
## Run 339 stress 8.839874e-05
## ... Procrustes: rmse 0.0001277391 max resid 0.0002743786
## ... Similar to previous best
## Run 340 stress 9.70334e-05
## ... Procrustes: rmse 0.0002090475 max resid 0.000407888
## ... Similar to previous best
## Run 341 stress 9.540678e-05
## ... Procrustes: rmse 0.000159957 max resid 0.0002369689
## ... Similar to previous best
## Run 342 stress 9.069802e-05
## ... Procrustes: rmse 0.0001579568 max resid 0.0002980757
## ... Similar to previous best
## Run 343 stress 9.287998e-05
## ... Procrustes: rmse 0.0001398183 max resid 0.0002611743
## ... Similar to previous best
## Run 344 stress 9.951363e-05
## ... Procrustes: rmse 0.0002040346 max resid 0.0003165005
## ... Similar to previous best
## Run 345 stress 9.025349e-05
## ... Procrustes: rmse 9.348131e-05 max resid 0.0001955362
## ... Similar to previous best
## Run 346 stress 9.928692e-05
## ... Procrustes: rmse 7.43263e-05 max resid 0.0001283727
## ... Similar to previous best
## Run 347 stress 8.732146e-05
## ... Procrustes: rmse 0.0001528013 max resid 0.0003335451
## ... Similar to previous best
## Run 348 stress 9.957084e-05
## ... Procrustes: rmse 0.0001981413 max resid 0.0003590846
## ... Similar to previous best
## Run 349 stress 9.649598e-05
## ... Procrustes: rmse 0.0002085979 max resid 0.0004073659
## ... Similar to previous best
## Run 350 stress 9.977386e-05
## ... Procrustes: rmse 0.0001132444 max resid 0.0002238605
## ... Similar to previous best
## Run 351 stress 9.610045e-05
## ... Procrustes: rmse 0.0001608522 max resid 0.0003344869
## ... Similar to previous best
## Run 352 stress 9.486938e-05
## ... Procrustes: rmse 0.000140083 max resid 0.0002893732
## ... Similar to previous best
## Run 353 stress 9.573963e-05
## ... Procrustes: rmse 8.543312e-05 max resid 0.0001266222
## ... Similar to previous best
## Run 354 stress 9.949364e-05
## ... Procrustes: rmse 8.648967e-05 max resid 0.0001389411
## ... Similar to previous best
## Run 355 stress 9.629904e-05
## ... Procrustes: rmse 0.0001560609 max resid 0.0002909989
## ... Similar to previous best
## Run 356 stress 9.56336e-05
## ... Procrustes: rmse 0.0001709685 max resid 0.0003742257
## ... Similar to previous best
## Run 357 stress 9.334532e-05
## ... Procrustes: rmse 0.0001371416 max resid 0.0002840583
## ... Similar to previous best
## Run 358 stress 9.515809e-05
## ... Procrustes: rmse 0.0001895862 max resid 0.0003777044
## ... Similar to previous best
## Run 359 stress 9.5863e-05
## ... Procrustes: rmse 8.528372e-05 max resid 0.0001236875
## ... Similar to previous best
## Run 360 stress 9.70855e-05
## ... Procrustes: rmse 0.0001035508 max resid 0.0002093415
## ... Similar to previous best
## Run 361 stress 9.569624e-05
## ... Procrustes: rmse 0.0001396848 max resid 0.0002890094
## ... Similar to previous best
## Run 362 stress 9.974058e-05
## ... Procrustes: rmse 0.0001809849 max resid 0.0002708522
## ... Similar to previous best
## Run 363 stress 9.017594e-05
## ... Procrustes: rmse 0.0001321715 max resid 0.0002826553
## ... Similar to previous best
## Run 364 stress 7.919841e-05
## ... Procrustes: rmse 0.0001684874 max resid 0.0003461837
## ... Similar to previous best
## Run 365 stress 8.44418e-05
## ... Procrustes: rmse 0.0001149457 max resid 0.0002590914
## ... Similar to previous best
## Run 366 stress 9.203162e-05
## ... Procrustes: rmse 8.113982e-05 max resid 0.0001418447
## ... Similar to previous best
## Run 367 stress 8.791133e-05
## ... Procrustes: rmse 6.707957e-05 max resid 9.78424e-05
## ... Similar to previous best
## Run 368 stress 9.272559e-05
## ... Procrustes: rmse 0.000188919 max resid 0.0003020368
## ... Similar to previous best
## Run 369 stress 9.989945e-05
## ... Procrustes: rmse 0.0001225069 max resid 0.0002437479
## ... Similar to previous best
## Run 370 stress 9.528139e-05
## ... Procrustes: rmse 0.0001046894 max resid 0.0002126933
## ... Similar to previous best
## Run 371 stress 9.870351e-05
## ... Procrustes: rmse 0.0001995858 max resid 0.0003889363
## ... Similar to previous best
## Run 372 stress 9.603891e-05
## ... Procrustes: rmse 0.0001567495 max resid 0.0002923423
## ... Similar to previous best
## Run 373 stress 9.800347e-05
## ... Procrustes: rmse 0.0002124219 max resid 0.0004131861
## ... Similar to previous best
## Run 374 stress 9.748779e-05
## ... Procrustes: rmse 0.00015903 max resid 0.0002463016
## ... Similar to previous best
## Run 375 stress 9.023961e-05
## ... Procrustes: rmse 0.0001135154 max resid 0.0002255979
## ... Similar to previous best
## Run 376 stress 7.874856e-05
## ... Procrustes: rmse 0.0001277825 max resid 0.0002376711
## ... Similar to previous best
## Run 377 stress 8.430723e-05
## ... Procrustes: rmse 0.000119852 max resid 0.0002543975
## ... Similar to previous best
## Run 378 stress 9.436495e-05
## ... Procrustes: rmse 0.0001380622 max resid 0.0002863275
## ... Similar to previous best
## Run 379 stress 9.877504e-05
## ... Procrustes: rmse 0.0001576397 max resid 0.0002970647
## ... Similar to previous best
## Run 380 stress 0.206342
## Run 381 stress 7.526447e-05
## ... Procrustes: rmse 0.0001476714 max resid 0.0002589541
## ... Similar to previous best
## Run 382 stress 9.402078e-05
## ... Procrustes: rmse 0.0001358064 max resid 0.0002709644
## ... Similar to previous best
## Run 383 stress 9.772209e-05
## ... Procrustes: rmse 0.0001923718 max resid 0.0003067239
## ... Similar to previous best
## Run 384 stress 9.138139e-05
## ... Procrustes: rmse 0.000132066 max resid 0.0002477604
## ... Similar to previous best
## Run 385 stress 9.466599e-05
## ... Procrustes: rmse 0.0002048771 max resid 0.0004012658
## ... Similar to previous best
## Run 386 stress 9.438219e-05
## ... Procrustes: rmse 0.0001386446 max resid 0.0002863135
## ... Similar to previous best
## Run 387 stress 9.278885e-05
## ... Procrustes: rmse 0.0001116347 max resid 0.0001894896
## ... Similar to previous best
## Run 388 stress 9.45473e-05
## ... Procrustes: rmse 0.0001688906 max resid 0.0003695458
## ... Similar to previous best
## Run 389 stress 9.564803e-05
## ... Procrustes: rmse 0.0001483931 max resid 0.000273127
## ... Similar to previous best
## Run 390 stress 9.883374e-05
## ... Procrustes: rmse 0.0002142241 max resid 0.0004146502
## ... Similar to previous best
## Run 391 stress 9.818496e-05
## ... Procrustes: rmse 0.0001587761 max resid 0.0002923233
## ... Similar to previous best
## Run 392 stress 9.934253e-05
## ... Procrustes: rmse 0.0002009591 max resid 0.0003912733
## ... Similar to previous best
## Run 393 stress 9.697622e-05
## ... Procrustes: rmse 0.0001902268 max resid 0.0003821275
## ... Similar to previous best
## Run 394 stress 9.796724e-05
## ... Procrustes: rmse 0.0002108531 max resid 0.0004098341
## ... Similar to previous best
## Run 395 stress 8.598815e-05
## ... Procrustes: rmse 0.0001674818 max resid 0.0002834006
## ... Similar to previous best
## Run 396 stress 9.419196e-05
## ... Procrustes: rmse 0.0001661135 max resid 0.0003654934
## ... Similar to previous best
## Run 397 stress 9.108324e-05
## ... Procrustes: rmse 0.0001881479 max resid 0.000292385
## ... Similar to previous best
## Run 398 stress 9.95533e-05
## ... Procrustes: rmse 9.057585e-05 max resid 0.0001349164
## ... Similar to previous best
## Run 399 stress 9.907032e-05
## ... Procrustes: rmse 8.741693e-05 max resid 0.0001506989
## ... Similar to previous best
## Run 400 stress 8.805184e-05
## ... Procrustes: rmse 9.154609e-05 max resid 0.00019498
## ... Similar to previous best
## Run 401 stress 9.251812e-05
## ... Procrustes: rmse 0.0001604374 max resid 0.0003453267
## ... Similar to previous best
## Run 402 stress 8.91042e-05
## ... Procrustes: rmse 0.0001330699 max resid 0.0002532575
## ... Similar to previous best
## Run 403 stress 9.737128e-05
## ... Procrustes: rmse 8.907709e-05 max resid 0.0001301345
## ... Similar to previous best
## Run 404 stress 9.986849e-05
## ... Procrustes: rmse 0.0001814541 max resid 0.0002714225
## ... Similar to previous best
## Run 405 stress 9.53488e-05
## ... Procrustes: rmse 0.0001522064 max resid 0.0002822472
## ... Similar to previous best
## Run 406 stress 9.70838e-05
## ... Procrustes: rmse 6.822639e-05 max resid 8.961092e-05
## ... Similar to previous best
## Run 407 stress 9.936733e-05
## ... Procrustes: rmse 8.852937e-05 max resid 0.0001485033
## ... Similar to previous best
## Run 408 stress 8.546814e-05
## ... Procrustes: rmse 0.0001696525 max resid 0.0003148595
## ... Similar to previous best
## Run 409 stress 9.843027e-05
## ... Procrustes: rmse 0.0001471219 max resid 0.0002964483
## ... Similar to previous best
## Run 410 stress 9.411025e-05
## ... Procrustes: rmse 0.0001682213 max resid 0.0003393898
## ... Similar to previous best
## Run 411 stress 7.255365e-05
## ... Procrustes: rmse 0.0001119342 max resid 0.0002323318
## ... Similar to previous best
## Run 412 stress 9.662773e-05
## ... Procrustes: rmse 0.0001488503 max resid 0.0002332396
## ... Similar to previous best
## Run 413 stress 9.953934e-05
## ... Procrustes: rmse 0.0001796876 max resid 0.0002685796
## ... Similar to previous best
## Run 414 stress 9.184751e-05
## ... Procrustes: rmse 0.0001303774 max resid 0.0002810625
## ... Similar to previous best
## Run 415 stress 9.606244e-05
## ... Procrustes: rmse 0.000162431 max resid 0.0002429907
## ... Similar to previous best
## Run 416 stress 9.628232e-05
## ... Procrustes: rmse 0.0001964965 max resid 0.0003094334
## ... Similar to previous best
## Run 417 stress 9.272941e-05
## ... Procrustes: rmse 7.830785e-05 max resid 0.0001152184
## ... Similar to previous best
## Run 418 stress 9.660613e-05
## ... Procrustes: rmse 0.0001548436 max resid 0.0003478644
## ... Similar to previous best
## Run 419 stress 9.465681e-05
## ... Procrustes: rmse 0.0001640027 max resid 0.0003607148
## ... Similar to previous best
## Run 420 stress 0.2362213
## Run 421 stress 9.892164e-05
## ... Procrustes: rmse 0.0002133294 max resid 0.0004132873
## ... Similar to previous best
## Run 422 stress 9.858307e-05
## ... Procrustes: rmse 0.0001771978 max resid 0.0003789752
## ... Similar to previous best
## Run 423 stress 9.90203e-05
## ... Procrustes: rmse 0.0001669308 max resid 0.0002463802
## ... Similar to previous best
## Run 424 stress 9.9235e-05
## ... Procrustes: rmse 0.0002064352 max resid 0.0003127633
## ... Similar to previous best
## Run 425 stress 9.067423e-05
## ... Procrustes: rmse 7.28319e-05 max resid 0.0001064099
## ... Similar to previous best
## Run 426 stress 8.844744e-05
## ... Procrustes: rmse 0.0001675131 max resid 0.0003545425
## ... Similar to previous best
## Run 427 stress 9.206051e-05
## ... Procrustes: rmse 0.0001525924 max resid 0.0002256992
## ... Similar to previous best
## Run 428 stress 8.416029e-05
## ... Procrustes: rmse 5.86763e-05 max resid 8.608442e-05
## ... Similar to previous best
## Run 429 stress 9.7742e-05
## ... Procrustes: rmse 0.0001768964 max resid 0.0002667296
## ... Similar to previous best
## Run 430 stress 9.994344e-05
## ... Procrustes: rmse 9.282862e-05 max resid 0.0001334016
## ... Similar to previous best
## Run 431 stress 8.306354e-05
## ... Procrustes: rmse 7.739677e-05 max resid 0.0001723671
## ... Similar to previous best
## Run 432 stress 9.432957e-05
## ... Procrustes: rmse 0.0001332386 max resid 0.0002172018
## ... Similar to previous best
## Run 433 stress 8.91477e-05
## ... Procrustes: rmse 0.0001946172 max resid 0.0003895407
## ... Similar to previous best
## Run 434 stress 8.876677e-05
## ... Procrustes: rmse 0.0001736806 max resid 0.0003166373
## ... Similar to previous best
## Run 435 stress 9.582496e-05
## ... Procrustes: rmse 0.0001431394 max resid 0.0002781267
## ... Similar to previous best
## Run 436 stress 9.575671e-05
## ... Procrustes: rmse 0.0001948126 max resid 0.0003095726
## ... Similar to previous best
## Run 437 stress 9.677415e-05
## ... Procrustes: rmse 0.0001640362 max resid 0.000243465
## ... Similar to previous best
## Run 438 stress 9.622442e-05
## ... Procrustes: rmse 0.0002084545 max resid 0.0004085293
## ... Similar to previous best
## Run 439 stress 9.795657e-05
## ... Procrustes: rmse 0.0001697194 max resid 0.0003574807
## ... Similar to previous best
## Run 440 stress 9.645007e-05
## ... Procrustes: rmse 0.0001704963 max resid 0.0003706851
## ... Similar to previous best
## Run 441 stress 9.829303e-05
## ... Procrustes: rmse 9.14681e-05 max resid 0.0001342685
## ... Similar to previous best
## Run 442 stress 9.51572e-05
## ... Procrustes: rmse 0.0001520497 max resid 0.0002861823
## ... Similar to previous best
## Run 443 stress 9.733995e-05
## ... Procrustes: rmse 0.000125576 max resid 0.0002716273
## ... Similar to previous best
## Run 444 stress 9.80168e-05
## ... Procrustes: rmse 8.839063e-05 max resid 0.0001229152
## ... Similar to previous best
## Run 445 stress 9.742132e-05
## ... Procrustes: rmse 0.0001084492 max resid 0.0002175801
## ... Similar to previous best
## Run 446 stress 9.228873e-05
## ... Procrustes: rmse 7.629165e-05 max resid 0.0001115447
## ... Similar to previous best
## Run 447 stress 9.712864e-05
## ... Procrustes: rmse 0.0001733898 max resid 0.0003906985
## ... Similar to previous best
## Run 448 stress 9.722248e-05
## ... Procrustes: rmse 0.0001564026 max resid 0.0002495142
## ... Similar to previous best
## Run 449 stress 9.827365e-05
## ... Procrustes: rmse 0.0001623636 max resid 0.0002987496
## ... Similar to previous best
## Run 450 stress 9.878593e-05
## ... Procrustes: rmse 0.0001742075 max resid 0.0003909751
## ... Similar to previous best
## Run 451 stress 9.565911e-05
## ... Procrustes: rmse 0.0001926431 max resid 0.000358538
## ... Similar to previous best
## Run 452 stress 9.649035e-05
## ... Procrustes: rmse 0.0001932307 max resid 0.0003548411
## ... Similar to previous best
## Run 453 stress 9.56517e-05
## ... Procrustes: rmse 0.000141805 max resid 0.0002923333
## ... Similar to previous best
## Run 454 stress 9.853842e-05
## ... Procrustes: rmse 7.921936e-05 max resid 0.000111707
## ... Similar to previous best
## Run 455 stress 9.454624e-05
## ... Procrustes: rmse 9.38783e-05 max resid 0.000170782
## ... Similar to previous best
## Run 456 stress 9.554215e-05
## ... Procrustes: rmse 0.0001696539 max resid 0.0003694819
## ... Similar to previous best
## Run 457 stress 9.220582e-05
## ... Procrustes: rmse 0.0001467506 max resid 0.0002812787
## ... Similar to previous best
## Run 458 stress 9.774267e-05
## ... Procrustes: rmse 0.0001503274 max resid 0.0002317597
## ... Similar to previous best
## Run 459 stress 9.565204e-05
## ... Procrustes: rmse 0.0002069876 max resid 0.0004059171
## ... Similar to previous best
## Run 460 stress 9.957229e-05
## ... Procrustes: rmse 9.261815e-05 max resid 0.0001376866
## ... Similar to previous best
## Run 461 stress 9.659137e-05
## ... Procrustes: rmse 0.0001843862 max resid 0.000361496
## ... Similar to previous best
## Run 462 stress 9.552301e-05
## ... Procrustes: rmse 0.0001714996 max resid 0.0003736441
## ... Similar to previous best
## Run 463 stress 9.054493e-05
## ... Procrustes: rmse 9.609535e-05 max resid 0.0002013467
## ... Similar to previous best
## Run 464 stress 9.562909e-05
## ... Procrustes: rmse 0.0001029734 max resid 0.0002070872
## ... Similar to previous best
## Run 465 stress 9.663014e-05
## ... Procrustes: rmse 0.0002096859 max resid 0.0004093251
## ... Similar to previous best
## Run 466 stress 9.68083e-05
## ... Procrustes: rmse 0.0001367625 max resid 0.0002810355
## ... Similar to previous best
## Run 467 stress 9.246838e-05
## ... Procrustes: rmse 0.0001422745 max resid 0.0002656499
## ... Similar to previous best
## Run 468 stress 9.664999e-05
## ... Procrustes: rmse 9.352999e-05 max resid 0.0001646234
## ... Similar to previous best
## Run 469 stress 9.523562e-05
## ... Procrustes: rmse 0.0001938598 max resid 0.000306185
## ... Similar to previous best
## Run 470 stress 9.683772e-05
## ... Procrustes: rmse 8.221572e-05 max resid 0.000126062
## ... Similar to previous best
## Run 471 stress 8.302796e-05
## ... Procrustes: rmse 0.0001362743 max resid 0.0002527815
## ... Similar to previous best
## Run 472 stress 9.537129e-05
## ... Procrustes: rmse 0.0001926332 max resid 0.0003066222
## ... Similar to previous best
## Run 473 stress 9.738347e-05
## ... Procrustes: rmse 8.589593e-05 max resid 0.0001192907
## ... Similar to previous best
## Run 474 stress 9.522971e-05
## ... Procrustes: rmse 0.000153471 max resid 0.0002912599
## ... Similar to previous best
## Run 475 stress 9.280134e-05
## ... Procrustes: rmse 0.0001608106 max resid 0.0003566979
## ... Similar to previous best
## Run 476 stress 9.093503e-05
## ... Procrustes: rmse 0.0001570231 max resid 0.0003187335
## ... Similar to previous best
## Run 477 stress 9.628882e-05
## ... Procrustes: rmse 6.68909e-05 max resid 0.0001057053
## ... Similar to previous best
## Run 478 stress 9.494782e-05
## ... Procrustes: rmse 0.000127635 max resid 0.0002788122
## ... Similar to previous best
## Run 479 stress 9.575296e-05
## ... Procrustes: rmse 0.0001729794 max resid 0.0002609475
## ... Similar to previous best
## Run 480 stress 9.471887e-05
## ... Procrustes: rmse 0.0001796459 max resid 0.0003516203
## ... Similar to previous best
## Run 481 stress 9.355922e-05
## ... Procrustes: rmse 0.000196569 max resid 0.0003029581
## ... Similar to previous best
## Run 482 stress 8.653435e-05
## ... Procrustes: rmse 0.0001563891 max resid 0.0003111384
## ... Similar to previous best
## Run 483 stress 8.909799e-05
## ... Procrustes: rmse 0.00019381 max resid 0.0003891483
## ... Similar to previous best
## Run 484 stress 9.121985e-05
## ... Procrustes: rmse 0.0001928804 max resid 0.0002989936
## ... Similar to previous best
## Run 485 stress 9.428498e-05
## ... Procrustes: rmse 0.0001810923 max resid 0.0002607777
## ... Similar to previous best
## Run 486 stress 9.590099e-05
## ... Procrustes: rmse 0.0002079875 max resid 0.0004066051
## ... Similar to previous best
## Run 487 stress 9.343984e-05
## ... Procrustes: rmse 7.770277e-05 max resid 0.0001182121
## ... Similar to previous best
## Run 488 stress 9.648016e-05
## ... Procrustes: rmse 0.0001122054 max resid 0.0001966543
## ... Similar to previous best
## Run 489 stress 9.873841e-05
## ... Procrustes: rmse 0.0001629969 max resid 0.000365217
## ... Similar to previous best
## Run 490 stress 9.261642e-05
## ... Procrustes: rmse 9.940558e-05 max resid 0.0002071701
## ... Similar to previous best
## Run 491 stress 8.891161e-05
## ... Procrustes: rmse 0.0001295243 max resid 0.0002802229
## ... Similar to previous best
## Run 492 stress 9.774807e-05
## ... Procrustes: rmse 0.0001454649 max resid 0.0002919783
## ... Similar to previous best
## Run 493 stress 9.915556e-05
## ... Procrustes: rmse 9.222463e-05 max resid 0.0001646676
## ... Similar to previous best
## Run 494 stress 9.353164e-05
## ... Procrustes: rmse 0.000165515 max resid 0.0003480661
## ... Similar to previous best
## Run 495 stress 9.820541e-05
## ... Procrustes: rmse 0.0001951882 max resid 0.0003609844
## ... Similar to previous best
## Run 496 stress 9.614086e-05
## ... Procrustes: rmse 0.0001344973 max resid 0.0002817428
## ... Similar to previous best
## Run 497 stress 9.002489e-05
## ... Procrustes: rmse 9.30283e-05 max resid 0.0001973882
## ... Similar to previous best
## Run 498 stress 9.987271e-05
## ... Procrustes: rmse 0.0001729222 max resid 0.0003651593
## ... Similar to previous best
## Run 499 stress 9.513502e-05
## ... Procrustes: rmse 0.0001689931 max resid 0.0003045042
## ... Similar to previous best
## Run 500 stress 9.866027e-05
## ... Procrustes: rmse 0.0002073255 max resid 0.0004044378
## ... Similar to previous best
## *** Best solution repeated 330 times## Warning in metaMDS(jpreseso_dist, try = 1000, parallel = 4, previous.best, :
## stress is (nearly) zero: you may have insufficient data## Dice-Sørensen
# All sites
sprese_NMDS <- metaMDS(sprese_dist, try = 1000, parallel = 4)## Run 0 stress 0.08144919
## Run 1 stress 0.08265366
## Run 2 stress 0.08189388
## ... Procrustes: rmse 0.07166969 max resid 0.1938115
## Run 3 stress 0.07948983
## ... New best solution
## ... Procrustes: rmse 0.01588629 max resid 0.04491025
## Run 4 stress 0.08182117
## Run 5 stress 0.08485117
## Run 6 stress 0.08443448
## Run 7 stress 0.08252799
## Run 8 stress 0.082502
## Run 9 stress 0.081757
## Run 10 stress 0.08433703
## Run 11 stress 0.08217345
## Run 12 stress 0.09103944
## Run 13 stress 0.08097762
## Run 14 stress 0.0800318
## Run 15 stress 0.08471604
## Run 16 stress 0.08459589
## Run 17 stress 0.08530166
## Run 18 stress 0.09063323
## Run 19 stress 0.08265437
## Run 20 stress 0.08957589
## *** Best solution was not repeated -- monoMDS stopping criteria:
## 20: stress ratio > sratmax# Mixed and stratified lakes
spresems_NMDS <- metaMDS(spresems_dist, try = 1000, parallel = 4)## Run 0 stress 0.08503579
## Run 1 stress 0.09268391
## Run 2 stress 0.09374328
## Run 3 stress 0.09669866
## Run 4 stress 0.09286084
## Run 5 stress 0.09535434
## Run 6 stress 0.09407979
## Run 7 stress 0.09030397
## Run 8 stress 0.08503513
## ... New best solution
## ... Procrustes: rmse 0.0004036477 max resid 0.001140587
## ... Similar to previous best
## Run 9 stress 0.08440254
## ... New best solution
## ... Procrustes: rmse 0.01430485 max resid 0.04275519
## Run 10 stress 0.09407974
## Run 11 stress 0.08503621
## Run 12 stress 0.09380583
## Run 13 stress 0.09465906
## Run 14 stress 0.09268338
## Run 15 stress 0.09030408
## Run 16 stress 0.1026215
## Run 17 stress 0.09337274
## Run 18 stress 0.085037
## Run 19 stress 0.09030396
## Run 20 stress 0.08503487
## *** Best solution was not repeated -- monoMDS stopping criteria:
## 20: stress ratio > sratmax# Ocean sites and mixed lakes
spreseom_NMDS <- metaMDS(spreseom_dist, try = 1000, parallel = 4)## Run 0 stress 0.06623465
## Run 1 stress 0.07411955
## Run 2 stress 0.06124496
## ... New best solution
## ... Procrustes: rmse 0.1389504 max resid 0.2532802
## Run 3 stress 0.07411951
## Run 4 stress 0.0741194
## Run 5 stress 0.06623461
## Run 6 stress 0.08226162
## Run 7 stress 0.06477929
## Run 8 stress 0.06623457
## Run 9 stress 0.0612336
## ... New best solution
## ... Procrustes: rmse 0.01451356 max resid 0.04041493
## Run 10 stress 0.06477881
## Run 11 stress 0.2548126
## Run 12 stress 0.0716697
## Run 13 stress 0.2887255
## Run 14 stress 0.06623459
## Run 15 stress 0.06124493
## ... Procrustes: rmse 0.01499279 max resid 0.04152836
## Run 16 stress 0.0741195
## Run 17 stress 0.06477967
## Run 18 stress 0.06623459
## Run 19 stress 0.06623458
## Run 20 stress 0.06477887
## *** Best solution was not repeated -- monoMDS stopping criteria:
## 19: stress ratio > sratmax
## 1: scale factor of the gradient < sfgrmin# Stratified lakes and ocean sites
spreseso_NMDS <- metaMDS(spreseso_dist, try = 1000, parallel = 4)## Run 0 stress 9.120921e-05
## Run 1 stress 8.988777e-05
## ... New best solution
## ... Procrustes: rmse 0.0001908834 max resid 0.0003487929
## ... Similar to previous best
## Run 2 stress 0.2413829
## Run 3 stress 9.87493e-05
## ... Procrustes: rmse 0.0001882507 max resid 0.00035701
## ... Similar to previous best
## Run 4 stress 9.505239e-05
## ... Procrustes: rmse 0.0001254943 max resid 0.0002498878
## ... Similar to previous best
## Run 5 stress 8.842979e-05
## ... New best solution
## ... Procrustes: rmse 0.0001800877 max resid 0.0003365766
## ... Similar to previous best
## Run 6 stress 9.664653e-05
## ... Procrustes: rmse 0.0001841995 max resid 0.0004296358
## ... Similar to previous best
## Run 7 stress 9.753874e-05
## ... Procrustes: rmse 0.0002298436 max resid 0.0004665612
## ... Similar to previous best
## Run 8 stress 9.599941e-05
## ... Procrustes: rmse 0.0001788471 max resid 0.0003310474
## ... Similar to previous best
## Run 9 stress 9.376373e-05
## ... Procrustes: rmse 0.00017492 max resid 0.0003224698
## ... Similar to previous best
## Run 10 stress 9.762915e-05
## ... Procrustes: rmse 0.0001317214 max resid 0.0002844036
## ... Similar to previous best
## Run 11 stress 8.458922e-05
## ... New best solution
## ... Procrustes: rmse 0.0002356651 max resid 0.0004325938
## ... Similar to previous best
## Run 12 stress 9.633549e-05
## ... Procrustes: rmse 0.0001697501 max resid 0.0002836809
## ... Similar to previous best
## Run 13 stress 9.895871e-05
## ... Procrustes: rmse 0.0001290125 max resid 0.000296876
## ... Similar to previous best
## Run 14 stress 9.913057e-05
## ... Procrustes: rmse 0.0002327374 max resid 0.0004048325
## ... Similar to previous best
## Run 15 stress 9.966467e-05
## ... Procrustes: rmse 0.0002136448 max resid 0.0003117524
## ... Similar to previous best
## Run 16 stress 9.528411e-05
## ... Procrustes: rmse 0.000172575 max resid 0.0004073891
## ... Similar to previous best
## Run 17 stress 9.615783e-05
## ... Procrustes: rmse 0.0001822469 max resid 0.0003446949
## ... Similar to previous best
## Run 18 stress 0.2391425
## Run 19 stress 9.384909e-05
## ... Procrustes: rmse 0.0001817118 max resid 0.0003432172
## ... Similar to previous best
## Run 20 stress 9.49004e-05
## ... Procrustes: rmse 0.0002144172 max resid 0.0003669832
## ... Similar to previous best
## *** Best solution repeated 9 times## Warning in metaMDS(spreseso_dist, try = 1000, parallel = 4): stress is (nearly)
## zero: you may have insufficient data### Biogeographic
## Jaccard
# All sites
jpresb_NMDS <- metaMDS(jpresb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.090746
## Run 1 stress 0.0923613
## Run 2 stress 0.09148455
## Run 3 stress 0.09087538
## ... Procrustes: rmse 0.02928647 max resid 0.09283843
## Run 4 stress 0.09236132
## Run 5 stress 0.09646675
## Run 6 stress 0.0907461
## ... Procrustes: rmse 0.0001475972 max resid 0.0002487037
## ... Similar to previous best
## Run 7 stress 0.09160271
## Run 8 stress 0.1072735
## Run 9 stress 0.1074332
## Run 10 stress 0.09160263
## Run 11 stress 0.1071955
## Run 12 stress 0.09160268
## Run 13 stress 0.1076547
## Run 14 stress 0.1073654
## Run 15 stress 0.1076701
## Run 16 stress 0.09236125
## Run 17 stress 0.09702934
## Run 18 stress 0.09299747
## Run 19 stress 0.1070509
## Run 20 stress 0.1071953
## Run 21 stress 0.09072306
## ... New best solution
## ... Procrustes: rmse 0.02826535 max resid 0.09367669
## Run 22 stress 0.09160262
## Run 23 stress 0.1071481
## Run 24 stress 0.09123427
## Run 25 stress 0.1071481
## Run 26 stress 0.1077817
## Run 27 stress 0.1076824
## Run 28 stress 0.09160265
## Run 29 stress 0.0907461
## ... Procrustes: rmse 0.02822845 max resid 0.09419437
## Run 30 stress 0.1068691
## Run 31 stress 0.09702954
## Run 32 stress 0.107273
## Run 33 stress 0.09161034
## Run 34 stress 0.1087015
## Run 35 stress 0.09646616
## Run 36 stress 0.09160268
## Run 37 stress 0.1077822
## Run 38 stress 0.09172709
## Run 39 stress 0.0964663
## Run 40 stress 0.1104974
## Run 41 stress 0.09012996
## ... New best solution
## ... Procrustes: rmse 0.01519781 max resid 0.0411981
## Run 42 stress 0.0916028
## Run 43 stress 0.09012993
## ... New best solution
## ... Procrustes: rmse 4.023064e-05 max resid 7.926606e-05
## ... Similar to previous best
## Run 44 stress 0.09161031
## Run 45 stress 0.107432
## Run 46 stress 0.09161028
## Run 47 stress 0.1076282
## Run 48 stress 0.1071476
## Run 49 stress 0.09123413
## Run 50 stress 0.1087012
## Run 51 stress 0.1076542
## Run 52 stress 0.107051
## Run 53 stress 0.09335816
## Run 54 stress 0.1087661
## Run 55 stress 0.09140394
## Run 56 stress 0.1115199
## Run 57 stress 0.090746
## Run 58 stress 0.1096251
## Run 59 stress 0.09236137
## Run 60 stress 0.09072327
## Run 61 stress 0.09140394
## Run 62 stress 0.09161036
## Run 63 stress 0.09160265
## Run 64 stress 0.1072735
## Run 65 stress 0.0916103
## Run 66 stress 0.1076283
## Run 67 stress 0.09160264
## Run 68 stress 0.1068699
## Run 69 stress 0.1065864
## Run 70 stress 0.1077996
## Run 71 stress 0.1115197
## Run 72 stress 0.0923612
## Run 73 stress 0.09161035
## Run 74 stress 0.09236121
## Run 75 stress 0.09702978
## Run 76 stress 0.09286508
## Run 77 stress 0.09072304
## Run 78 stress 0.0916026
## Run 79 stress 0.09646659
## Run 80 stress 0.1068695
## Run 81 stress 0.09236129
## Run 82 stress 0.1071484
## Run 83 stress 0.09087543
## Run 84 stress 0.09123408
## Run 85 stress 0.1067344
## Run 86 stress 0.09161033
## Run 87 stress 0.1087016
## Run 88 stress 0.09162889
## Run 89 stress 0.090746
## Run 90 stress 0.09646762
## Run 91 stress 0.09677547
## Run 92 stress 0.1073658
## Run 93 stress 0.09161028
## Run 94 stress 0.09335798
## Run 95 stress 0.1077202
## Run 96 stress 0.1102834
## Run 97 stress 0.09161035
## Run 98 stress 0.090746
## Run 99 stress 0.1076822
## Run 100 stress 0.1076701
## Run 101 stress 0.09301382
## Run 102 stress 0.09246731
## Run 103 stress 0.1133904
## Run 104 stress 0.09008902
## ... New best solution
## ... Procrustes: rmse 0.009025347 max resid 0.0308572
## Run 105 stress 0.1067466
## Run 106 stress 0.107051
## Run 107 stress 0.09140383
## Run 108 stress 0.107273
## Run 109 stress 0.09286503
## Run 110 stress 0.09677703
## Run 111 stress 0.09160275
## Run 112 stress 0.1073655
## Run 113 stress 0.0964664
## Run 114 stress 0.1099469
## Run 115 stress 0.09072306
## Run 116 stress 0.1109104
## Run 117 stress 0.09161036
## Run 118 stress 0.09646618
## Run 119 stress 0.1070509
## Run 120 stress 0.09013008
## ... Procrustes: rmse 0.009030306 max resid 0.03099909
## Run 121 stress 0.09161038
## Run 122 stress 0.09072305
## Run 123 stress 0.09087551
## Run 124 stress 0.09161027
## Run 125 stress 0.09072306
## Run 126 stress 0.0907231
## Run 127 stress 0.1072734
## Run 128 stress 0.1074324
## Run 129 stress 0.09246743
## Run 130 stress 0.09162895
## Run 131 stress 0.09072313
## Run 132 stress 0.1067343
## Run 133 stress 0.09162892
## Run 134 stress 0.1087018
## Run 135 stress 0.09236118
## Run 136 stress 0.1088838
## Run 137 stress 0.09072318
## Run 138 stress 0.09161035
## Run 139 stress 0.09161035
## Run 140 stress 0.1090357
## Run 141 stress 0.1067338
## Run 142 stress 0.106734
## Run 143 stress 0.09072316
## Run 144 stress 0.09813095
## Run 145 stress 0.1076824
## Run 146 stress 0.09074603
## Run 147 stress 0.09161044
## Run 148 stress 0.09301386
## Run 149 stress 0.09286529
## Run 150 stress 0.09396281
## Run 151 stress 0.1072732
## Run 152 stress 0.1070513
## Run 153 stress 0.1072864
## Run 154 stress 0.09813102
## Run 155 stress 0.090089
## ... New best solution
## ... Procrustes: rmse 6.418934e-05 max resid 0.0001067422
## ... Similar to previous best
## Run 156 stress 0.1104973
## Run 157 stress 0.09161028
## Run 158 stress 0.09206441
## Run 159 stress 0.1087653
## Run 160 stress 0.09072304
## Run 161 stress 0.09072312
## Run 162 stress 0.09286517
## Run 163 stress 0.09677743
## Run 164 stress 0.09206448
## Run 165 stress 0.09236122
## Run 166 stress 0.090746
## Run 167 stress 0.1070509
## Run 168 stress 0.09161034
## Run 169 stress 0.09161029
## Run 170 stress 0.107273
## Run 171 stress 0.09301399
## Run 172 stress 0.0920645
## Run 173 stress 0.09160276
## Run 174 stress 0.09161028
## Run 175 stress 0.1077999
## Run 176 stress 0.09012989
## ... Procrustes: rmse 0.009027026 max resid 0.03094068
## Run 177 stress 0.09140394
## Run 178 stress 0.1074317
## Run 179 stress 0.09301406
## Run 180 stress 0.107273
## Run 181 stress 0.1087657
## Run 182 stress 0.1101712
## Run 183 stress 0.09286513
## Run 184 stress 0.09702955
## Run 185 stress 0.09008913
## ... Procrustes: rmse 0.0001408665 max resid 0.0002382693
## ... Similar to previous best
## Run 186 stress 0.090746
## Run 187 stress 0.09813132
## Run 188 stress 0.09236118
## Run 189 stress 0.09236124
## Run 190 stress 0.110171
## Run 191 stress 0.1065862
## Run 192 stress 0.09160267
## Run 193 stress 0.0916026
## Run 194 stress 0.1077996
## Run 195 stress 0.1118503
## Run 196 stress 0.09236118
## Run 197 stress 0.09072547
## Run 198 stress 0.0916027
## Run 199 stress 0.1067327
## Run 200 stress 0.1073654
## Run 201 stress 0.09236118
## Run 202 stress 0.09646604
## Run 203 stress 0.1102834
## Run 204 stress 0.1077992
## Run 205 stress 0.1090356
## Run 206 stress 0.09246745
## Run 207 stress 0.1104964
## Run 208 stress 0.09161042
## Run 209 stress 0.09702963
## Run 210 stress 0.1076701
## Run 211 stress 0.09335818
## Run 212 stress 0.1081605
## Run 213 stress 0.1073654
## Run 214 stress 0.09161028
## Run 215 stress 0.1087012
## Run 216 stress 0.1071478
## Run 217 stress 0.09072543
## Run 218 stress 0.09087538
## Run 219 stress 0.09301421
## Run 220 stress 0.1065863
## Run 221 stress 0.09162896
## Run 222 stress 0.09161027
## Run 223 stress 0.09160271
## Run 224 stress 0.1073654
## Run 225 stress 0.09160262
## Run 226 stress 0.1071956
## Run 227 stress 0.09161028
## Run 228 stress 0.09646698
## Run 229 stress 0.1119477
## Run 230 stress 0.1087014
## Run 231 stress 0.09172706
## Run 232 stress 0.09161028
## Run 233 stress 0.106869
## Run 234 stress 0.1099466
## Run 235 stress 0.09206451
## Run 236 stress 0.09072311
## Run 237 stress 0.0916103
## Run 238 stress 0.09161044
## Run 239 stress 0.1108945
## Run 240 stress 0.09160281
## Run 241 stress 0.09072552
## Run 242 stress 0.09702933
## Run 243 stress 0.1070509
## Run 244 stress 0.09161037
## Run 245 stress 0.09677533
## Run 246 stress 0.09160268
## Run 247 stress 0.09008904
## ... Procrustes: rmse 9.296883e-05 max resid 0.0001545219
## ... Similar to previous best
## Run 248 stress 0.090089
## ... Procrustes: rmse 1.19634e-05 max resid 2.098958e-05
## ... Similar to previous best
## Run 249 stress 0.090746
## Run 250 stress 0.09206452
## Run 251 stress 0.09161031
## Run 252 stress 0.1067348
## Run 253 stress 0.1073655
## Run 254 stress 0.09123416
## Run 255 stress 0.09161036
## Run 256 stress 0.0916104
## Run 257 stress 0.09336453
## Run 258 stress 0.09160266
## Run 259 stress 0.09072318
## Run 260 stress 0.09140399
## Run 261 stress 0.090746
## Run 262 stress 0.1076822
## Run 263 stress 0.1071482
## Run 264 stress 0.1087658
## Run 265 stress 0.1067347
## Run 266 stress 0.1074328
## Run 267 stress 0.09012991
## ... Procrustes: rmse 0.009022426 max resid 0.03085437
## Run 268 stress 0.1067469
## Run 269 stress 0.090089
## ... Procrustes: rmse 2.882278e-05 max resid 4.634513e-05
## ... Similar to previous best
## Run 270 stress 0.1077997
## Run 271 stress 0.108255
## Run 272 stress 0.09172709
## Run 273 stress 0.09087541
## Run 274 stress 0.09072312
## Run 275 stress 0.09301407
## Run 276 stress 0.1101718
## Run 277 stress 0.09161029
## Run 278 stress 0.09299756
## Run 279 stress 0.1108945
## Run 280 stress 0.09236125
## Run 281 stress 0.09072543
## Run 282 stress 0.1072732
## Run 283 stress 0.09072543
## Run 284 stress 0.1077996
## Run 285 stress 0.09206445
## Run 286 stress 0.1076282
## Run 287 stress 0.09072304
## Run 288 stress 0.09702969
## Run 289 stress 0.107799
## Run 290 stress 0.09072317
## Run 291 stress 0.09172701
## Run 292 stress 0.1077992
## Run 293 stress 0.09160263
## Run 294 stress 0.09646742
## Run 295 stress 0.0920645
## Run 296 stress 0.09856353
## Run 297 stress 0.1072735
## Run 298 stress 0.1067472
## Run 299 stress 0.09148473
## Run 300 stress 0.1073654
## Run 301 stress 0.09074601
## Run 302 stress 0.09206443
## Run 303 stress 0.09162887
## Run 304 stress 0.09123416
## Run 305 stress 0.1090352
## Run 306 stress 0.09140409
## Run 307 stress 0.09087553
## Run 308 stress 0.09646747
## Run 309 stress 0.1087012
## Run 310 stress 0.09236134
## Run 311 stress 0.09161029
## Run 312 stress 0.09206452
## Run 313 stress 0.1087656
## Run 314 stress 0.1101716
## Run 315 stress 0.111521
## Run 316 stress 0.1076819
## Run 317 stress 0.09072553
## Run 318 stress 0.1087016
## Run 319 stress 0.1073654
## Run 320 stress 0.1118777
## Run 321 stress 0.1067337
## Run 322 stress 0.09161052
## Run 323 stress 0.09072306
## Run 324 stress 0.09677532
## Run 325 stress 0.1074349
## Run 326 stress 0.09072551
## Run 327 stress 0.09012989
## ... Procrustes: rmse 0.009028531 max resid 0.03096213
## Run 328 stress 0.09335813
## Run 329 stress 0.1090352
## Run 330 stress 0.09160259
## Run 331 stress 0.09161028
## Run 332 stress 0.09008909
## ... Procrustes: rmse 0.0001458147 max resid 0.0002421131
## ... Similar to previous best
## Run 333 stress 0.1065863
## Run 334 stress 0.0912342
## Run 335 stress 0.09236118
## Run 336 stress 0.09161031
## Run 337 stress 0.1076283
## Run 338 stress 0.1067349
## Run 339 stress 0.1108357
## Run 340 stress 0.09646693
## Run 341 stress 0.09160267
## Run 342 stress 0.09072312
## Run 343 stress 0.09087543
## Run 344 stress 0.09161038
## Run 345 stress 0.09161027
## Run 346 stress 0.09286499
## Run 347 stress 0.09162891
## Run 348 stress 0.09160262
## Run 349 stress 0.09072308
## Run 350 stress 0.09087538
## Run 351 stress 0.1072732
## Run 352 stress 0.09172701
## Run 353 stress 0.09161028
## Run 354 stress 0.09072316
## Run 355 stress 0.1093937
## Run 356 stress 0.09087538
## Run 357 stress 0.1082559
## Run 358 stress 0.090746
## Run 359 stress 0.09236118
## Run 360 stress 0.1077996
## Run 361 stress 0.0912341
## Run 362 stress 0.1115212
## Run 363 stress 0.09702927
## Run 364 stress 0.09072543
## Run 365 stress 0.1090355
## Run 366 stress 0.09161035
## Run 367 stress 0.09123421
## Run 368 stress 0.09286507
## Run 369 stress 0.1109105
## Run 370 stress 0.1072732
## Run 371 stress 0.09160262
## Run 372 stress 0.0908754
## Run 373 stress 0.09012991
## ... Procrustes: rmse 0.009022922 max resid 0.03085711
## Run 374 stress 0.09646609
## Run 375 stress 0.09072308
## Run 376 stress 0.09299749
## Run 377 stress 0.09160294
## Run 378 stress 0.09813078
## Run 379 stress 0.09286522
## Run 380 stress 0.09236118
## Run 381 stress 0.09160273
## Run 382 stress 0.09008909
## ... Procrustes: rmse 0.0001498225 max resid 0.0002496078
## ... Similar to previous best
## Run 383 stress 0.09008903
## ... Procrustes: rmse 8.171955e-05 max resid 0.0001370667
## ... Similar to previous best
## Run 384 stress 0.107273
## Run 385 stress 0.1072097
## Run 386 stress 0.09335826
## Run 387 stress 0.1077992
## Run 388 stress 0.09072305
## Run 389 stress 0.096466
## Run 390 stress 0.1070509
## Run 391 stress 0.09160261
## Run 392 stress 0.09160267
## Run 393 stress 0.107051
## Run 394 stress 0.1077997
## Run 395 stress 0.1073655
## Run 396 stress 0.1108355
## Run 397 stress 0.09396266
## Run 398 stress 0.1073655
## Run 399 stress 0.09140374
## Run 400 stress 0.09161027
## Run 401 stress 0.09012991
## ... Procrustes: rmse 0.009033266 max resid 0.03105521
## Run 402 stress 0.09646669
## Run 403 stress 0.09160277
## Run 404 stress 0.1067338
## Run 405 stress 0.09008901
## ... Procrustes: rmse 4.585965e-05 max resid 7.391204e-05
## ... Similar to previous best
## Run 406 stress 0.1074334
## Run 407 stress 0.1065864
## Run 408 stress 0.1067348
## Run 409 stress 0.1102836
## Run 410 stress 0.09012997
## ... Procrustes: rmse 0.009018083 max resid 0.03075464
## Run 411 stress 0.09677532
## Run 412 stress 0.09702979
## Run 413 stress 0.09236118
## Run 414 stress 0.1068692
## Run 415 stress 0.09162887
## Run 416 stress 0.1072731
## Run 417 stress 0.1108358
## Run 418 stress 0.1108356
## Run 419 stress 0.09236127
## Run 420 stress 0.0923612
## Run 421 stress 0.1072731
## Run 422 stress 0.1090355
## Run 423 stress 0.09813087
## Run 424 stress 0.09140402
## Run 425 stress 0.09072304
## Run 426 stress 0.09301417
## Run 427 stress 0.09702949
## Run 428 stress 0.09072309
## Run 429 stress 0.1067335
## Run 430 stress 0.09161032
## Run 431 stress 0.1076702
## Run 432 stress 0.09301391
## Run 433 stress 0.09140373
## Run 434 stress 0.09646542
## Run 435 stress 0.09160266
## Run 436 stress 0.09206454
## Run 437 stress 0.09160265
## Run 438 stress 0.1077996
## Run 439 stress 0.1068696
## Run 440 stress 0.1087657
## Run 441 stress 0.09677631
## Run 442 stress 0.09206442
## Run 443 stress 0.09072308
## Run 444 stress 0.0916026
## Run 445 stress 0.09161029
## Run 446 stress 0.09012993
## ... Procrustes: rmse 0.0090208 max resid 0.03081244
## Run 447 stress 0.09140376
## Run 448 stress 0.1076819
## Run 449 stress 0.09206459
## Run 450 stress 0.09702953
## Run 451 stress 0.09161027
## Run 452 stress 0.09646707
## Run 453 stress 0.1074326
## Run 454 stress 0.1090353
## Run 455 stress 0.1068693
## Run 456 stress 0.1071476
## Run 457 stress 0.09236118
## Run 458 stress 0.1073654
## Run 459 stress 0.1074342
## Run 460 stress 0.1099466
## Run 461 stress 0.09236125
## Run 462 stress 0.090746
## Run 463 stress 0.1072735
## Run 464 stress 0.0912341
## Run 465 stress 0.09161036
## Run 466 stress 0.09286669
## Run 467 stress 0.09072543
## Run 468 stress 0.1102833
## Run 469 stress 0.09161035
## Run 470 stress 0.09396275
## Run 471 stress 0.1076283
## Run 472 stress 0.0964682
## Run 473 stress 0.1077818
## Run 474 stress 0.0923612
## Run 475 stress 0.1093945
## Run 476 stress 0.09008904
## ... Procrustes: rmse 9.592848e-05 max resid 0.0001594017
## ... Similar to previous best
## Run 477 stress 0.09160259
## Run 478 stress 0.09162889
## Run 479 stress 0.09160263
## Run 480 stress 0.09161032
## Run 481 stress 0.1071962
## Run 482 stress 0.09286503
## Run 483 stress 0.1067465
## Run 484 stress 0.09162889
## Run 485 stress 0.1102831
## Run 486 stress 0.1074327
## Run 487 stress 0.1096258
## Run 488 stress 0.1067339
## Run 489 stress 0.09677534
## Run 490 stress 0.09162887
## Run 491 stress 0.1073654
## Run 492 stress 0.1072731
## Run 493 stress 0.0908754
## Run 494 stress 0.1072731
## Run 495 stress 0.1067338
## Run 496 stress 0.1072731
## Run 497 stress 0.09160265
## Run 498 stress 0.09286503
## Run 499 stress 0.09087543
## Run 500 stress 0.0923613
## *** Best solution repeated 10 times# Mixed and stratified lakes
jpresbms_NMDS <- metaMDS(jpresbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08659673
## Run 1 stress 0.09847317
## Run 2 stress 0.1017606
## Run 3 stress 0.1084403
## Run 4 stress 0.1055395
## Run 5 stress 0.09820575
## Run 6 stress 0.1055395
## Run 7 stress 0.09669148
## Run 8 stress 0.1009084
## Run 9 stress 0.08709978
## Run 10 stress 0.0870998
## Run 11 stress 0.09678125
## Run 12 stress 0.1001416
## Run 13 stress 0.09770037
## Run 14 stress 0.09659294
## Run 15 stress 0.0993334
## Run 16 stress 0.09610472
## Run 17 stress 0.1017605
## Run 18 stress 0.09610458
## Run 19 stress 0.09820576
## Run 20 stress 0.09669197
## Run 21 stress 0.08659679
## ... Procrustes: rmse 0.0001209689 max resid 0.0002641472
## ... Similar to previous best
## Run 22 stress 0.09610473
## Run 23 stress 0.09610471
## Run 24 stress 0.0971931
## Run 25 stress 0.09669148
## Run 26 stress 0.09770003
## Run 27 stress 0.09669153
## Run 28 stress 0.08659682
## ... Procrustes: rmse 0.0001157269 max resid 0.0002402509
## ... Similar to previous best
## Run 29 stress 0.09610464
## Run 30 stress 0.3023335
## Run 31 stress 0.0870998
## Run 32 stress 0.1084404
## Run 33 stress 0.1083834
## Run 34 stress 0.08709978
## Run 35 stress 0.09933326
## Run 36 stress 0.1001416
## Run 37 stress 0.08659674
## ... Procrustes: rmse 4.134831e-05 max resid 8.633737e-05
## ... Similar to previous best
## Run 38 stress 0.09926886
## Run 39 stress 0.09719301
## Run 40 stress 0.08709991
## Run 41 stress 0.1001415
## Run 42 stress 0.09634639
## Run 43 stress 0.09847322
## Run 44 stress 0.08709985
## Run 45 stress 0.08709979
## Run 46 stress 0.0967811
## Run 47 stress 0.09770022
## Run 48 stress 0.08709978
## Run 49 stress 0.08659675
## ... Procrustes: rmse 5.458297e-05 max resid 0.0001151017
## ... Similar to previous best
## Run 50 stress 0.1009079
## Run 51 stress 0.1055801
## Run 52 stress 0.09639143
## Run 53 stress 0.0870998
## Run 54 stress 0.08709999
## Run 55 stress 0.1009081
## Run 56 stress 0.09639148
## Run 57 stress 0.09639141
## Run 58 stress 0.08659678
## ... Procrustes: rmse 0.0001117348 max resid 0.0002439218
## ... Similar to previous best
## Run 59 stress 0.09610454
## Run 60 stress 0.09639148
## Run 61 stress 0.09610461
## Run 62 stress 0.09781864
## Run 63 stress 0.09678131
## Run 64 stress 0.09610471
## Run 65 stress 0.09899169
## Run 66 stress 0.0963914
## Run 67 stress 0.08709987
## Run 68 stress 0.08709992
## Run 69 stress 0.08709988
## Run 70 stress 0.2519918
## Run 71 stress 0.0961045
## Run 72 stress 0.09634629
## Run 73 stress 0.09769993
## Run 74 stress 0.1084403
## Run 75 stress 0.1009079
## Run 76 stress 0.09610455
## Run 77 stress 0.10558
## Run 78 stress 0.09610483
## Run 79 stress 0.09610469
## Run 80 stress 0.09899095
## Run 81 stress 0.09719298
## Run 82 stress 0.08659677
## ... Procrustes: rmse 5.171293e-05 max resid 9.894633e-05
## ... Similar to previous best
## Run 83 stress 0.09610488
## Run 84 stress 0.09820575
## Run 85 stress 0.09820572
## Run 86 stress 0.09610468
## Run 87 stress 0.09926832
## Run 88 stress 0.1001416
## Run 89 stress 0.09678116
## Run 90 stress 0.1001416
## Run 91 stress 0.0870998
## Run 92 stress 0.09933331
## Run 93 stress 0.09639163
## Run 94 stress 0.1001415
## Run 95 stress 0.08659673
## ... Procrustes: rmse 6.537481e-06 max resid 1.406847e-05
## ... Similar to previous best
## Run 96 stress 0.09610454
## Run 97 stress 0.09669147
## Run 98 stress 0.1001415
## Run 99 stress 0.08709986
## Run 100 stress 0.08659681
## ... Procrustes: rmse 0.0001397791 max resid 0.0003003544
## ... Similar to previous best
## Run 101 stress 0.09610464
## Run 102 stress 0.08709979
## Run 103 stress 0.09639152
## Run 104 stress 0.08709983
## Run 105 stress 0.08659676
## ... Procrustes: rmse 7.646863e-05 max resid 0.0001660115
## ... Similar to previous best
## Run 106 stress 0.08659673
## ... Procrustes: rmse 2.489345e-05 max resid 5.384034e-05
## ... Similar to previous best
## Run 107 stress 0.0961045
## Run 108 stress 0.09769936
## Run 109 stress 0.08709994
## Run 110 stress 0.0870998
## Run 111 stress 0.09820578
## Run 112 stress 0.0961045
## Run 113 stress 0.0963914
## Run 114 stress 0.09610477
## Run 115 stress 0.09769922
## Run 116 stress 0.1025582
## Run 117 stress 0.09634639
## Run 118 stress 0.08709983
## Run 119 stress 0.09659318
## Run 120 stress 0.09610455
## Run 121 stress 0.09610479
## Run 122 stress 0.08659678
## ... Procrustes: rmse 0.00010743 max resid 0.0002340695
## ... Similar to previous best
## Run 123 stress 0.09610486
## Run 124 stress 0.09639137
## Run 125 stress 0.09719309
## Run 126 stress 0.1001415
## Run 127 stress 0.1159873
## Run 128 stress 0.09610474
## Run 129 stress 0.08659672
## ... New best solution
## ... Procrustes: rmse 1.696284e-05 max resid 3.726246e-05
## ... Similar to previous best
## Run 130 stress 0.09974297
## Run 131 stress 0.08659672
## ... Procrustes: rmse 6.011089e-06 max resid 1.421746e-05
## ... Similar to previous best
## Run 132 stress 0.09610482
## Run 133 stress 0.09926921
## Run 134 stress 0.09639155
## Run 135 stress 0.0982058
## Run 136 stress 0.08659674
## ... Procrustes: rmse 6.244974e-05 max resid 0.0001357017
## ... Similar to previous best
## Run 137 stress 0.08659675
## ... Procrustes: rmse 8.594786e-05 max resid 0.0001998756
## ... Similar to previous best
## Run 138 stress 0.09678129
## Run 139 stress 0.1017605
## Run 140 stress 0.1001417
## Run 141 stress 0.08709978
## Run 142 stress 0.09820579
## Run 143 stress 0.09610451
## Run 144 stress 0.09659302
## Run 145 stress 0.09719302
## Run 146 stress 0.24998
## Run 147 stress 0.09770013
## Run 148 stress 0.09678118
## Run 149 stress 0.09639154
## Run 150 stress 0.1017608
## Run 151 stress 0.09926819
## Run 152 stress 0.1055395
## Run 153 stress 0.2668212
## Run 154 stress 0.1001417
## Run 155 stress 0.0870998
## Run 156 stress 0.09820571
## Run 157 stress 0.1017606
## Run 158 stress 0.25055
## Run 159 stress 0.09974303
## Run 160 stress 0.09669167
## Run 161 stress 0.1001415
## Run 162 stress 0.08709979
## Run 163 stress 0.09847326
## Run 164 stress 0.09847335
## Run 165 stress 0.1009083
## Run 166 stress 0.1017605
## Run 167 stress 0.10844
## Run 168 stress 0.1084403
## Run 169 stress 0.09669168
## Run 170 stress 0.1023119
## Run 171 stress 0.1001416
## Run 172 stress 0.1025583
## Run 173 stress 0.1001416
## Run 174 stress 0.0961048
## Run 175 stress 0.08709978
## Run 176 stress 0.09974306
## Run 177 stress 0.08659679
## ... Procrustes: rmse 0.000143358 max resid 0.0003108634
## ... Similar to previous best
## Run 178 stress 0.09639168
## Run 179 stress 0.09719298
## Run 180 stress 0.09899153
## Run 181 stress 0.09659287
## Run 182 stress 0.09933246
## Run 183 stress 0.09639145
## Run 184 stress 0.09659293
## Run 185 stress 0.09610489
## Run 186 stress 0.09610451
## Run 187 stress 0.09770049
## Run 188 stress 0.1083836
## Run 189 stress 0.09769969
## Run 190 stress 0.1009083
## Run 191 stress 0.09610458
## Run 192 stress 0.08709978
## Run 193 stress 0.09610456
## Run 194 stress 0.08709978
## Run 195 stress 0.09678129
## Run 196 stress 0.1055395
## Run 197 stress 0.0961045
## Run 198 stress 0.08709992
## Run 199 stress 0.09610457
## Run 200 stress 0.0870999
## Run 201 stress 0.09610466
## Run 202 stress 0.1015317
## Run 203 stress 0.0961045
## Run 204 stress 0.3373344
## Run 205 stress 0.1001416
## Run 206 stress 0.0870998
## Run 207 stress 0.09659299
## Run 208 stress 0.09639136
## Run 209 stress 0.09610452
## Run 210 stress 0.1009083
## Run 211 stress 0.0971931
## Run 212 stress 0.08659675
## ... Procrustes: rmse 8.671552e-05 max resid 0.0001881892
## ... Similar to previous best
## Run 213 stress 0.09669153
## Run 214 stress 0.1084399
## Run 215 stress 0.09610473
## Run 216 stress 0.09610474
## Run 217 stress 0.0865968
## ... Procrustes: rmse 0.0001326304 max resid 0.0002766035
## ... Similar to previous best
## Run 218 stress 0.09820577
## Run 219 stress 0.0870999
## Run 220 stress 0.08709978
## Run 221 stress 0.09847321
## Run 222 stress 0.08659674
## ... Procrustes: rmse 6.529878e-05 max resid 0.0001410278
## ... Similar to previous best
## Run 223 stress 0.08659687
## ... Procrustes: rmse 0.0002073137 max resid 0.0004472042
## ... Similar to previous best
## Run 224 stress 0.09669147
## Run 225 stress 0.09610459
## Run 226 stress 0.1088711
## Run 227 stress 0.09719303
## Run 228 stress 0.1084402
## Run 229 stress 0.09719297
## Run 230 stress 0.1055804
## Run 231 stress 0.1009082
## Run 232 stress 0.08659677
## ... Procrustes: rmse 0.000118279 max resid 0.0002552334
## ... Similar to previous best
## Run 233 stress 0.0963915
## Run 234 stress 0.08659673
## ... Procrustes: rmse 4.28518e-05 max resid 8.390445e-05
## ... Similar to previous best
## Run 235 stress 0.08709978
## Run 236 stress 0.09610469
## Run 237 stress 0.0865968
## ... Procrustes: rmse 0.0001574818 max resid 0.0003457644
## ... Similar to previous best
## Run 238 stress 0.1088712
## Run 239 stress 0.08659673
## ... Procrustes: rmse 3.312183e-05 max resid 7.19539e-05
## ... Similar to previous best
## Run 240 stress 0.08709987
## Run 241 stress 0.08709978
## Run 242 stress 0.08659673
## ... Procrustes: rmse 3.06464e-05 max resid 6.664712e-05
## ... Similar to previous best
## Run 243 stress 0.09639142
## Run 244 stress 0.09678117
## Run 245 stress 0.09610452
## Run 246 stress 0.08709981
## Run 247 stress 0.09659336
## Run 248 stress 0.0984733
## Run 249 stress 0.09847313
## Run 250 stress 0.1008328
## Run 251 stress 0.09669179
## Run 252 stress 0.10558
## Run 253 stress 0.09610479
## Run 254 stress 0.1023118
## Run 255 stress 0.08709986
## Run 256 stress 0.08659681
## ... Procrustes: rmse 0.0001572695 max resid 0.0003396277
## ... Similar to previous best
## Run 257 stress 0.09847322
## Run 258 stress 0.09610462
## Run 259 stress 0.09610462
## Run 260 stress 0.09610454
## Run 261 stress 0.1015317
## Run 262 stress 0.09610459
## Run 263 stress 0.08659672
## ... Procrustes: rmse 1.251336e-05 max resid 2.680724e-05
## ... Similar to previous best
## Run 264 stress 0.08709979
## Run 265 stress 0.08709984
## Run 266 stress 0.09820571
## Run 267 stress 0.08709978
## Run 268 stress 0.08709981
## Run 269 stress 0.09610469
## Run 270 stress 0.08709997
## Run 271 stress 0.09610475
## Run 272 stress 0.09610456
## Run 273 stress 0.0865968
## ... Procrustes: rmse 0.0001500299 max resid 0.0003248834
## ... Similar to previous best
## Run 274 stress 0.09926899
## Run 275 stress 0.09769922
## Run 276 stress 0.08709982
## Run 277 stress 0.08659675
## ... Procrustes: rmse 9.350295e-05 max resid 0.0002022585
## ... Similar to previous best
## Run 278 stress 0.1008329
## Run 279 stress 0.0870998
## Run 280 stress 0.09659322
## Run 281 stress 0.09820569
## Run 282 stress 0.0870998
## Run 283 stress 0.09820584
## Run 284 stress 0.09769941
## Run 285 stress 0.08709992
## Run 286 stress 0.1001416
## Run 287 stress 0.1017603
## Run 288 stress 0.08659676
## ... Procrustes: rmse 9.738969e-05 max resid 0.0002112982
## ... Similar to previous best
## Run 289 stress 0.09610485
## Run 290 stress 0.09781859
## Run 291 stress 0.09669148
## Run 292 stress 0.1017608
## Run 293 stress 0.09639158
## Run 294 stress 0.08659684
## ... Procrustes: rmse 0.000188347 max resid 0.0004062606
## ... Similar to previous best
## Run 295 stress 0.09820573
## Run 296 stress 0.09639136
## Run 297 stress 0.08709978
## Run 298 stress 0.1001416
## Run 299 stress 0.1084405
## Run 300 stress 0.08709978
## Run 301 stress 0.09669177
## Run 302 stress 0.09639146
## Run 303 stress 0.1009081
## Run 304 stress 0.3216672
## Run 305 stress 0.09634631
## Run 306 stress 0.09610463
## Run 307 stress 0.0961049
## Run 308 stress 0.09719302
## Run 309 stress 0.2492652
## Run 310 stress 0.09974299
## Run 311 stress 0.1017603
## Run 312 stress 0.1001415
## Run 313 stress 0.0870998
## Run 314 stress 0.1009084
## Run 315 stress 0.09974297
## Run 316 stress 0.09719303
## Run 317 stress 0.3073577
## Run 318 stress 0.08709978
## Run 319 stress 0.09610459
## Run 320 stress 0.09926851
## Run 321 stress 0.09820574
## Run 322 stress 0.08659674
## ... Procrustes: rmse 7.349805e-05 max resid 0.0001484167
## ... Similar to previous best
## Run 323 stress 0.08659672
## ... Procrustes: rmse 4.675175e-06 max resid 1.042245e-05
## ... Similar to previous best
## Run 324 stress 0.08709982
## Run 325 stress 0.09639149
## Run 326 stress 0.09639136
## Run 327 stress 0.08709983
## Run 328 stress 0.1023117
## Run 329 stress 0.09769977
## Run 330 stress 0.09610454
## Run 331 stress 0.08709981
## Run 332 stress 0.09610476
## Run 333 stress 0.09678126
## Run 334 stress 0.08709978
## Run 335 stress 0.08659689
## ... Procrustes: rmse 0.0001952877 max resid 0.0004233741
## ... Similar to previous best
## Run 336 stress 0.09610452
## Run 337 stress 0.2513325
## Run 338 stress 0.09610455
## Run 339 stress 0.08659673
## ... Procrustes: rmse 1.736097e-05 max resid 3.834582e-05
## ... Similar to previous best
## Run 340 stress 0.09610487
## Run 341 stress 0.09669147
## Run 342 stress 0.0961045
## Run 343 stress 0.08709994
## Run 344 stress 0.1001416
## Run 345 stress 0.1001416
## Run 346 stress 0.09678134
## Run 347 stress 0.08659676
## ... Procrustes: rmse 0.0001015713 max resid 0.0002205313
## ... Similar to previous best
## Run 348 stress 0.09610483
## Run 349 stress 0.0989915
## Run 350 stress 0.1055395
## Run 351 stress 0.08659673
## ... Procrustes: rmse 3.084376e-05 max resid 6.671217e-05
## ... Similar to previous best
## Run 352 stress 0.09926911
## Run 353 stress 0.08709984
## Run 354 stress 0.08659674
## ... Procrustes: rmse 5.459163e-05 max resid 0.0001158749
## ... Similar to previous best
## Run 355 stress 0.08709978
## Run 356 stress 0.09719308
## Run 357 stress 0.1001415
## Run 358 stress 0.09678117
## Run 359 stress 0.08659678
## ... Procrustes: rmse 0.000130959 max resid 0.0002729753
## ... Similar to previous best
## Run 360 stress 0.09639135
## Run 361 stress 0.1088714
## Run 362 stress 0.09610481
## Run 363 stress 0.09847317
## Run 364 stress 0.09933395
## Run 365 stress 0.09669146
## Run 366 stress 0.09847327
## Run 367 stress 0.08659679
## ... Procrustes: rmse 0.0001423034 max resid 0.0003062278
## ... Similar to previous best
## Run 368 stress 0.08709982
## Run 369 stress 0.09678113
## Run 370 stress 0.08709992
## Run 371 stress 0.1083842
## Run 372 stress 0.09820572
## Run 373 stress 0.09770052
## Run 374 stress 0.09847324
## Run 375 stress 0.0967813
## Run 376 stress 0.09974297
## Run 377 stress 0.2492113
## Run 378 stress 0.0961047
## Run 379 stress 0.1055397
## Run 380 stress 0.100908
## Run 381 stress 0.0870998
## Run 382 stress 0.1001417
## Run 383 stress 0.09769969
## Run 384 stress 0.08659677
## ... Procrustes: rmse 0.0001250945 max resid 0.000270698
## ... Similar to previous best
## Run 385 stress 0.1008328
## Run 386 stress 0.09769984
## Run 387 stress 0.09770036
## Run 388 stress 0.09847316
## Run 389 stress 0.0870998
## Run 390 stress 0.08709981
## Run 391 stress 0.08709978
## Run 392 stress 0.09639143
## Run 393 stress 0.113574
## Run 394 stress 0.09669146
## Run 395 stress 0.09719313
## Run 396 stress 0.0984732
## Run 397 stress 0.09669154
## Run 398 stress 0.08709999
## Run 399 stress 0.09659299
## Run 400 stress 0.09669152
## Run 401 stress 0.09669148
## Run 402 stress 0.08659673
## ... Procrustes: rmse 4.974727e-05 max resid 0.0001089761
## ... Similar to previous best
## Run 403 stress 0.09847323
## Run 404 stress 0.1017606
## Run 405 stress 0.09719312
## Run 406 stress 0.0977003
## Run 407 stress 0.3089594
## Run 408 stress 0.09847322
## Run 409 stress 0.1017604
## Run 410 stress 0.09974303
## Run 411 stress 0.09719305
## Run 412 stress 0.09610467
## Run 413 stress 0.08709984
## Run 414 stress 0.1017603
## Run 415 stress 0.09610451
## Run 416 stress 0.08709978
## Run 417 stress 0.09847341
## Run 418 stress 0.09926822
## Run 419 stress 0.09669148
## Run 420 stress 0.08709979
## Run 421 stress 0.09659303
## Run 422 stress 0.09770004
## Run 423 stress 0.09639145
## Run 424 stress 0.09678122
## Run 425 stress 0.100908
## Run 426 stress 0.09678127
## Run 427 stress 0.08659681
## ... Procrustes: rmse 0.0001249824 max resid 0.0002645202
## ... Similar to previous best
## Run 428 stress 0.2513324
## Run 429 stress 0.0963914
## Run 430 stress 0.09610452
## Run 431 stress 0.100908
## Run 432 stress 0.09974302
## Run 433 stress 0.09678112
## Run 434 stress 0.08709984
## Run 435 stress 0.09639137
## Run 436 stress 0.0961045
## Run 437 stress 0.1009081
## Run 438 stress 0.08659673
## ... Procrustes: rmse 2.1377e-05 max resid 5.044906e-05
## ... Similar to previous best
## Run 439 stress 0.09639143
## Run 440 stress 0.09847336
## Run 441 stress 0.09669157
## Run 442 stress 0.3242894
## Run 443 stress 0.08709985
## Run 444 stress 0.08709988
## Run 445 stress 0.09770051
## Run 446 stress 0.09669154
## Run 447 stress 0.1055395
## Run 448 stress 0.08709978
## Run 449 stress 0.08659677
## ... Procrustes: rmse 6.223809e-05 max resid 0.0001249404
## ... Similar to previous best
## Run 450 stress 0.09926891
## Run 451 stress 0.1001415
## Run 452 stress 0.09669171
## Run 453 stress 0.08709989
## Run 454 stress 0.09610455
## Run 455 stress 0.08709981
## Run 456 stress 0.1017605
## Run 457 stress 0.3066246
## Run 458 stress 0.09678112
## Run 459 stress 0.1017603
## Run 460 stress 0.09678121
## Run 461 stress 0.09678139
## Run 462 stress 0.09926946
## Run 463 stress 0.1001415
## Run 464 stress 0.08709983
## Run 465 stress 0.1001417
## Run 466 stress 0.1008328
## Run 467 stress 0.10844
## Run 468 stress 0.09610466
## Run 469 stress 0.09639143
## Run 470 stress 0.08709979
## Run 471 stress 0.108384
## Run 472 stress 0.09639135
## Run 473 stress 0.1001416
## Run 474 stress 0.09669178
## Run 475 stress 0.25055
## Run 476 stress 0.09781865
## Run 477 stress 0.09719312
## Run 478 stress 0.0997432
## Run 479 stress 0.0961045
## Run 480 stress 0.09659288
## Run 481 stress 0.1001415
## Run 482 stress 0.09639147
## Run 483 stress 0.09719302
## Run 484 stress 0.08659674
## ... Procrustes: rmse 5.862388e-05 max resid 0.0001269699
## ... Similar to previous best
## Run 485 stress 0.09933324
## Run 486 stress 0.0982057
## Run 487 stress 0.09899127
## Run 488 stress 0.09610469
## Run 489 stress 0.08659682
## ... Procrustes: rmse 0.0001585878 max resid 0.0003443529
## ... Similar to previous best
## Run 490 stress 0.09678122
## Run 491 stress 0.09820572
## Run 492 stress 0.1001415
## Run 493 stress 0.08659673
## ... Procrustes: rmse 3.885074e-05 max resid 8.373421e-05
## ... Similar to previous best
## Run 494 stress 0.09847314
## Run 495 stress 0.1008329
## Run 496 stress 0.09719298
## Run 497 stress 0.09770001
## Run 498 stress 0.100908
## Run 499 stress 0.0865968
## ... Procrustes: rmse 0.0001514924 max resid 0.0003268317
## ... Similar to previous best
## Run 500 stress 0.1055397
## *** Best solution repeated 38 times# Ocean sites and mixed lakes
jpresbom_NMDS <- metaMDS(jpresbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.06881667
## Run 1 stress 0.06973634
## Run 2 stress 0.06881668
## ... Procrustes: rmse 3.707229e-05 max resid 8.685551e-05
## ... Similar to previous best
## Run 3 stress 0.06951346
## Run 4 stress 0.06961751
## Run 5 stress 0.06961823
## Run 6 stress 0.06881668
## ... Procrustes: rmse 3.718527e-05 max resid 8.666343e-05
## ... Similar to previous best
## Run 7 stress 0.06961734
## Run 8 stress 0.06961744
## Run 9 stress 0.06951321
## Run 10 stress 0.06973612
## Run 11 stress 0.06961701
## Run 12 stress 0.06881668
## ... Procrustes: rmse 5.49246e-05 max resid 0.0001298111
## ... Similar to previous best
## Run 13 stress 0.06881667
## ... Procrustes: rmse 1.122488e-05 max resid 2.642735e-05
## ... Similar to previous best
## Run 14 stress 0.06881667
## ... Procrustes: rmse 2.163379e-05 max resid 5.124693e-05
## ... Similar to previous best
## Run 15 stress 0.0738991
## Run 16 stress 0.07611923
## Run 17 stress 0.06881668
## ... Procrustes: rmse 3.265855e-05 max resid 7.483887e-05
## ... Similar to previous best
## Run 18 stress 0.06961862
## Run 19 stress 0.06961702
## Run 20 stress 0.07332519
## Run 21 stress 0.06951374
## Run 22 stress 0.07332524
## Run 23 stress 0.07611899
## Run 24 stress 0.0688167
## ... Procrustes: rmse 0.0001056499 max resid 0.0002459036
## ... Similar to previous best
## Run 25 stress 0.06951381
## Run 26 stress 0.07611934
## Run 27 stress 0.07332518
## Run 28 stress 0.06881667
## ... New best solution
## ... Procrustes: rmse 2.486788e-05 max resid 5.891223e-05
## ... Similar to previous best
## Run 29 stress 0.0695139
## Run 30 stress 0.06881669
## ... Procrustes: rmse 4.147499e-05 max resid 8.03705e-05
## ... Similar to previous best
## Run 31 stress 0.06881672
## ... Procrustes: rmse 0.0001253721 max resid 0.0002946389
## ... Similar to previous best
## Run 32 stress 0.06881685
## ... Procrustes: rmse 0.000237467 max resid 0.0005478976
## ... Similar to previous best
## Run 33 stress 0.076119
## Run 34 stress 0.06961743
## Run 35 stress 0.0741111
## Run 36 stress 0.06961883
## Run 37 stress 0.06973625
## Run 38 stress 0.07332512
## Run 39 stress 0.06961691
## Run 40 stress 0.06881688
## ... Procrustes: rmse 0.0002634591 max resid 0.0006133985
## ... Similar to previous best
## Run 41 stress 0.06961788
## Run 42 stress 0.06973619
## Run 43 stress 0.3124325
## Run 44 stress 0.06961812
## Run 45 stress 0.06881683
## ... Procrustes: rmse 0.0002038737 max resid 0.0004666732
## ... Similar to previous best
## Run 46 stress 0.06881671
## ... Procrustes: rmse 8.296776e-05 max resid 0.0001907189
## ... Similar to previous best
## Run 47 stress 0.06961773
## Run 48 stress 0.06881667
## ... Procrustes: rmse 3.142671e-05 max resid 6.69443e-05
## ... Similar to previous best
## Run 49 stress 0.06961867
## Run 50 stress 0.06961814
## Run 51 stress 0.06961816
## Run 52 stress 0.06961735
## Run 53 stress 0.06961748
## Run 54 stress 0.06881674
## ... Procrustes: rmse 0.0001538689 max resid 0.0003612142
## ... Similar to previous best
## Run 55 stress 0.06961752
## Run 56 stress 0.0688167
## ... Procrustes: rmse 0.0001029672 max resid 0.0002429018
## ... Similar to previous best
## Run 57 stress 0.06961723
## Run 58 stress 0.06961766
## Run 59 stress 0.3432081
## Run 60 stress 0.06961804
## Run 61 stress 0.0688167
## ... Procrustes: rmse 9.39904e-05 max resid 0.0002167171
## ... Similar to previous best
## Run 62 stress 0.07332523
## Run 63 stress 0.06961727
## Run 64 stress 0.06961769
## Run 65 stress 0.06961762
## Run 66 stress 0.06973607
## Run 67 stress 0.07411109
## Run 68 stress 0.06961736
## Run 69 stress 0.07411123
## Run 70 stress 0.06961833
## Run 71 stress 0.0695133
## Run 72 stress 0.07611905
## Run 73 stress 0.06961798
## Run 74 stress 0.06973621
## Run 75 stress 0.06961801
## Run 76 stress 0.06973614
## Run 77 stress 0.0697363
## Run 78 stress 0.07611919
## Run 79 stress 0.06881681
## ... Procrustes: rmse 0.0002107055 max resid 0.0004924381
## ... Similar to previous best
## Run 80 stress 0.06973624
## Run 81 stress 0.3432093
## Run 82 stress 0.06961809
## Run 83 stress 0.07611911
## Run 84 stress 0.06881685
## ... Procrustes: rmse 0.0002446261 max resid 0.000567317
## ... Similar to previous best
## Run 85 stress 0.06961706
## Run 86 stress 0.06961771
## Run 87 stress 0.06961694
## Run 88 stress 0.073325
## Run 89 stress 0.06881668
## ... Procrustes: rmse 4.799859e-05 max resid 0.000110303
## ... Similar to previous best
## Run 90 stress 0.06881667
## ... Procrustes: rmse 2.914904e-05 max resid 6.998451e-05
## ... Similar to previous best
## Run 91 stress 0.06881668
## ... Procrustes: rmse 6.490534e-05 max resid 0.0001570939
## ... Similar to previous best
## Run 92 stress 0.07611896
## Run 93 stress 0.06881667
## ... Procrustes: rmse 2.230581e-05 max resid 4.980879e-05
## ... Similar to previous best
## Run 94 stress 0.0688167
## ... Procrustes: rmse 0.0001025603 max resid 0.0002419988
## ... Similar to previous best
## Run 95 stress 0.06881667
## ... Procrustes: rmse 2.455969e-05 max resid 4.808855e-05
## ... Similar to previous best
## Run 96 stress 0.07611933
## Run 97 stress 0.07411105
## Run 98 stress 0.06951335
## Run 99 stress 0.3432088
## Run 100 stress 0.06973614
## Run 101 stress 0.06951388
## Run 102 stress 0.06881667
## ... Procrustes: rmse 2.239789e-05 max resid 5.178439e-05
## ... Similar to previous best
## Run 103 stress 0.06881667
## ... Procrustes: rmse 3.672415e-05 max resid 8.231821e-05
## ... Similar to previous best
## Run 104 stress 0.06881669
## ... Procrustes: rmse 6.727337e-05 max resid 0.0001618009
## ... Similar to previous best
## Run 105 stress 0.06973615
## Run 106 stress 0.06881667
## ... Procrustes: rmse 3.671674e-05 max resid 8.900947e-05
## ... Similar to previous best
## Run 107 stress 0.06961818
## Run 108 stress 0.06973604
## Run 109 stress 0.06961747
## Run 110 stress 0.0741111
## Run 111 stress 0.06973605
## Run 112 stress 0.0696173
## Run 113 stress 0.06961721
## Run 114 stress 0.06961787
## Run 115 stress 0.06961717
## Run 116 stress 0.06881667
## ... Procrustes: rmse 5.170671e-05 max resid 0.0001243318
## ... Similar to previous best
## Run 117 stress 0.06881668
## ... Procrustes: rmse 5.585912e-05 max resid 0.000125363
## ... Similar to previous best
## Run 118 stress 0.06881669
## ... Procrustes: rmse 6.397942e-05 max resid 0.0001448112
## ... Similar to previous best
## Run 119 stress 0.06961873
## Run 120 stress 0.06973645
## Run 121 stress 0.06961845
## Run 122 stress 0.06973619
## Run 123 stress 0.06961842
## Run 124 stress 0.07611893
## Run 125 stress 0.07411127
## Run 126 stress 0.06961778
## Run 127 stress 0.06961736
## Run 128 stress 0.07332518
## Run 129 stress 0.06951353
## Run 130 stress 0.06961885
## Run 131 stress 0.06881674
## ... Procrustes: rmse 0.0001536439 max resid 0.0003613783
## ... Similar to previous best
## Run 132 stress 0.2542395
## Run 133 stress 0.07332514
## Run 134 stress 0.07611891
## Run 135 stress 0.06881669
## ... Procrustes: rmse 8.162905e-05 max resid 0.0001911506
## ... Similar to previous best
## Run 136 stress 0.07611918
## Run 137 stress 0.0697363
## Run 138 stress 0.06881676
## ... Procrustes: rmse 7.572341e-05 max resid 0.0001470379
## ... Similar to previous best
## Run 139 stress 0.06951366
## Run 140 stress 0.06961742
## Run 141 stress 0.06881673
## ... Procrustes: rmse 0.0001224477 max resid 0.0002854185
## ... Similar to previous best
## Run 142 stress 0.3249489
## Run 143 stress 0.07389911
## Run 144 stress 0.06961815
## Run 145 stress 0.06881668
## ... Procrustes: rmse 6.654295e-05 max resid 0.0001592215
## ... Similar to previous best
## Run 146 stress 0.06951328
## Run 147 stress 0.06881667
## ... Procrustes: rmse 4.462024e-05 max resid 0.0001066635
## ... Similar to previous best
## Run 148 stress 0.0695139
## Run 149 stress 0.06881678
## ... Procrustes: rmse 0.0001897095 max resid 0.0004431387
## ... Similar to previous best
## Run 150 stress 0.06881668
## ... Procrustes: rmse 6.732049e-05 max resid 0.0001616825
## ... Similar to previous best
## Run 151 stress 0.07332538
## Run 152 stress 0.06973601
## Run 153 stress 0.06881667
## ... Procrustes: rmse 4.079071e-05 max resid 9.497156e-05
## ... Similar to previous best
## Run 154 stress 0.06881667
## ... Procrustes: rmse 3.396424e-05 max resid 7.986188e-05
## ... Similar to previous best
## Run 155 stress 0.06961706
## Run 156 stress 0.06973622
## Run 157 stress 0.06961737
## Run 158 stress 0.06973608
## Run 159 stress 0.06881669
## ... Procrustes: rmse 6.303449e-05 max resid 0.0001409866
## ... Similar to previous best
## Run 160 stress 0.06881667
## ... New best solution
## ... Procrustes: rmse 1.062642e-05 max resid 2.657931e-05
## ... Similar to previous best
## Run 161 stress 0.06961753
## Run 162 stress 0.06961698
## Run 163 stress 0.0761191
## Run 164 stress 0.06961787
## Run 165 stress 0.06951355
## Run 166 stress 0.0696172
## Run 167 stress 0.06961715
## Run 168 stress 0.06961811
## Run 169 stress 0.06973619
## Run 170 stress 0.06961727
## Run 171 stress 0.0741111
## Run 172 stress 0.06961756
## Run 173 stress 0.06973624
## Run 174 stress 0.06961751
## Run 175 stress 0.06881667
## ... Procrustes: rmse 2.920278e-05 max resid 5.962961e-05
## ... Similar to previous best
## Run 176 stress 0.06961863
## Run 177 stress 0.0688168
## ... Procrustes: rmse 0.0002019742 max resid 0.0004648162
## ... Similar to previous best
## Run 178 stress 0.06961842
## Run 179 stress 0.07611919
## Run 180 stress 0.06951344
## Run 181 stress 0.07411116
## Run 182 stress 0.06881672
## ... Procrustes: rmse 0.0001246117 max resid 0.0002900241
## ... Similar to previous best
## Run 183 stress 0.07332501
## Run 184 stress 0.06961796
## Run 185 stress 0.06961771
## Run 186 stress 0.06961823
## Run 187 stress 0.06961716
## Run 188 stress 0.06973612
## Run 189 stress 0.0696189
## Run 190 stress 0.06951366
## Run 191 stress 0.06951396
## Run 192 stress 0.069617
## Run 193 stress 0.06961795
## Run 194 stress 0.06973619
## Run 195 stress 0.3432096
## Run 196 stress 0.06881673
## ... Procrustes: rmse 0.0001376557 max resid 0.0003247543
## ... Similar to previous best
## Run 197 stress 0.2793271
## Run 198 stress 0.06961776
## Run 199 stress 0.0688167
## ... Procrustes: rmse 9.131292e-05 max resid 0.0002143166
## ... Similar to previous best
## Run 200 stress 0.06881667
## ... Procrustes: rmse 6.216862e-06 max resid 1.145681e-05
## ... Similar to previous best
## Run 201 stress 0.06951374
## Run 202 stress 0.07332531
## Run 203 stress 0.3116433
## Run 204 stress 0.06961772
## Run 205 stress 0.06961724
## Run 206 stress 0.06961832
## Run 207 stress 0.07611906
## Run 208 stress 0.06973625
## Run 209 stress 0.06961772
## Run 210 stress 0.06951389
## Run 211 stress 0.322285
## Run 212 stress 0.07332531
## Run 213 stress 0.07430909
## Run 214 stress 0.06961772
## Run 215 stress 0.06961813
## Run 216 stress 0.06961742
## Run 217 stress 0.0696184
## Run 218 stress 0.0696171
## Run 219 stress 0.07611929
## Run 220 stress 0.06881675
## ... Procrustes: rmse 0.0001311566 max resid 0.0002994971
## ... Similar to previous best
## Run 221 stress 0.06961788
## Run 222 stress 0.06973621
## Run 223 stress 0.06961699
## Run 224 stress 0.0695137
## Run 225 stress 0.06973627
## Run 226 stress 0.07430884
## Run 227 stress 0.07389906
## Run 228 stress 0.06881678
## ... Procrustes: rmse 0.0001771603 max resid 0.0004105285
## ... Similar to previous best
## Run 229 stress 0.0696173
## Run 230 stress 0.06961842
## Run 231 stress 0.06961758
## Run 232 stress 0.07611913
## Run 233 stress 0.06973638
## Run 234 stress 0.06973603
## Run 235 stress 0.07332526
## Run 236 stress 0.06961777
## Run 237 stress 0.06961872
## Run 238 stress 0.06961721
## Run 239 stress 0.06881668
## ... Procrustes: rmse 3.875343e-05 max resid 9.174295e-05
## ... Similar to previous best
## Run 240 stress 0.06881672
## ... Procrustes: rmse 0.0001286492 max resid 0.0003037984
## ... Similar to previous best
## Run 241 stress 0.06961737
## Run 242 stress 0.06881668
## ... Procrustes: rmse 5.653926e-05 max resid 0.0001332248
## ... Similar to previous best
## Run 243 stress 0.06961749
## Run 244 stress 0.07611907
## Run 245 stress 0.06973626
## Run 246 stress 0.06881669
## ... Procrustes: rmse 7.377438e-05 max resid 0.0001715535
## ... Similar to previous best
## Run 247 stress 0.07332538
## Run 248 stress 0.07332507
## Run 249 stress 0.06961722
## Run 250 stress 0.06881667
## ... Procrustes: rmse 1.457206e-05 max resid 3.214191e-05
## ... Similar to previous best
## Run 251 stress 0.07332513
## Run 252 stress 0.06881668
## ... Procrustes: rmse 6.712545e-05 max resid 0.000157953
## ... Similar to previous best
## Run 253 stress 0.06973623
## Run 254 stress 0.06961698
## Run 255 stress 0.06961712
## Run 256 stress 0.06961851
## Run 257 stress 0.0688167
## ... Procrustes: rmse 9.605922e-05 max resid 0.0002271885
## ... Similar to previous best
## Run 258 stress 0.0688167
## ... Procrustes: rmse 8.0601e-05 max resid 0.0001841793
## ... Similar to previous best
## Run 259 stress 0.06961733
## Run 260 stress 0.06973609
## Run 261 stress 0.0696178
## Run 262 stress 0.06881668
## ... Procrustes: rmse 7.391761e-05 max resid 0.0001741232
## ... Similar to previous best
## Run 263 stress 0.06961838
## Run 264 stress 0.07431072
## Run 265 stress 0.06961694
## Run 266 stress 0.07332501
## Run 267 stress 0.07411117
## Run 268 stress 0.06961698
## Run 269 stress 0.06951384
## Run 270 stress 0.06973607
## Run 271 stress 0.06961695
## Run 272 stress 0.07411115
## Run 273 stress 0.06881669
## ... Procrustes: rmse 8.565396e-05 max resid 0.0002033401
## ... Similar to previous best
## Run 274 stress 0.06961819
## Run 275 stress 0.06973612
## Run 276 stress 0.06881667
## ... Procrustes: rmse 1.833015e-05 max resid 4.159761e-05
## ... Similar to previous best
## Run 277 stress 0.06961824
## Run 278 stress 0.06951382
## Run 279 stress 0.06961785
## Run 280 stress 0.07611894
## Run 281 stress 0.0688168
## ... Procrustes: rmse 9.484586e-05 max resid 0.0002023772
## ... Similar to previous best
## Run 282 stress 0.06881672
## ... Procrustes: rmse 0.0001219237 max resid 0.0002862884
## ... Similar to previous best
## Run 283 stress 0.06881667
## ... Procrustes: rmse 3.945523e-05 max resid 9.149684e-05
## ... Similar to previous best
## Run 284 stress 0.06961809
## Run 285 stress 0.06881692
## ... Procrustes: rmse 0.0002854084 max resid 0.0006584032
## ... Similar to previous best
## Run 286 stress 0.06961767
## Run 287 stress 0.06973605
## Run 288 stress 0.06961722
## Run 289 stress 0.06961759
## Run 290 stress 0.06973615
## Run 291 stress 0.0697362
## Run 292 stress 0.06961784
## Run 293 stress 0.06961881
## Run 294 stress 0.06951345
## Run 295 stress 0.0688167
## ... Procrustes: rmse 6.677542e-05 max resid 0.0001561436
## ... Similar to previous best
## Run 296 stress 0.07389915
## Run 297 stress 0.3330624
## Run 298 stress 0.06961833
## Run 299 stress 0.06973636
## Run 300 stress 0.06881671
## ... Procrustes: rmse 0.0001075233 max resid 0.0002564141
## ... Similar to previous best
## Run 301 stress 0.06961773
## Run 302 stress 0.06961764
## Run 303 stress 0.06881668
## ... Procrustes: rmse 3.166928e-05 max resid 6.546023e-05
## ... Similar to previous best
## Run 304 stress 0.07611917
## Run 305 stress 0.06881668
## ... Procrustes: rmse 4.754453e-05 max resid 0.000105712
## ... Similar to previous best
## Run 306 stress 0.06961799
## Run 307 stress 0.0696181
## Run 308 stress 0.07611924
## Run 309 stress 0.06881677
## ... Procrustes: rmse 0.0001702901 max resid 0.0003923022
## ... Similar to previous best
## Run 310 stress 0.06973612
## Run 311 stress 0.06881667
## ... Procrustes: rmse 1.381966e-05 max resid 2.303705e-05
## ... Similar to previous best
## Run 312 stress 0.06881667
## ... Procrustes: rmse 2.641154e-05 max resid 6.006672e-05
## ... Similar to previous best
## Run 313 stress 0.06881667
## ... Procrustes: rmse 3.903286e-05 max resid 9.09345e-05
## ... Similar to previous best
## Run 314 stress 0.06961748
## Run 315 stress 0.06973617
## Run 316 stress 0.06961786
## Run 317 stress 0.2802483
## Run 318 stress 0.06961805
## Run 319 stress 0.06973602
## Run 320 stress 0.06881667
## ... Procrustes: rmse 3.407971e-05 max resid 7.845105e-05
## ... Similar to previous best
## Run 321 stress 0.06881667
## ... Procrustes: rmse 2.292576e-05 max resid 5.45962e-05
## ... Similar to previous best
## Run 322 stress 0.06973608
## Run 323 stress 0.06961748
## Run 324 stress 0.06881667
## ... Procrustes: rmse 5.931542e-06 max resid 1.079518e-05
## ... Similar to previous best
## Run 325 stress 0.06881668
## ... Procrustes: rmse 4.959322e-05 max resid 0.0001188502
## ... Similar to previous best
## Run 326 stress 0.06961744
## Run 327 stress 0.07411103
## Run 328 stress 0.06881667
## ... Procrustes: rmse 5.784598e-06 max resid 9.563635e-06
## ... Similar to previous best
## Run 329 stress 0.069617
## Run 330 stress 0.06973606
## Run 331 stress 0.0696183
## Run 332 stress 0.06961858
## Run 333 stress 0.06881667
## ... Procrustes: rmse 1.704494e-05 max resid 3.859592e-05
## ... Similar to previous best
## Run 334 stress 0.06961746
## Run 335 stress 0.07411109
## Run 336 stress 0.06961738
## Run 337 stress 0.06961844
## Run 338 stress 0.06881668
## ... Procrustes: rmse 6.041828e-05 max resid 0.0001424437
## ... Similar to previous best
## Run 339 stress 0.0688167
## ... Procrustes: rmse 9.818361e-05 max resid 0.0002294232
## ... Similar to previous best
## Run 340 stress 0.06973605
## Run 341 stress 0.06961704
## Run 342 stress 0.06973612
## Run 343 stress 0.06973617
## Run 344 stress 0.06881667
## ... Procrustes: rmse 9.514107e-06 max resid 2.067301e-05
## ... Similar to previous best
## Run 345 stress 0.0688167
## ... Procrustes: rmse 9.346963e-05 max resid 0.000218901
## ... Similar to previous best
## Run 346 stress 0.07332522
## Run 347 stress 0.0688167
## ... Procrustes: rmse 0.0001005687 max resid 0.0002376711
## ... Similar to previous best
## Run 348 stress 0.06961853
## Run 349 stress 0.06961758
## Run 350 stress 0.06881683
## ... Procrustes: rmse 0.0002178543 max resid 0.0005038827
## ... Similar to previous best
## Run 351 stress 0.06961766
## Run 352 stress 0.06973627
## Run 353 stress 0.07332504
## Run 354 stress 0.06961706
## Run 355 stress 0.06961777
## Run 356 stress 0.06881669
## ... Procrustes: rmse 2.224248e-05 max resid 4.002077e-05
## ... Similar to previous best
## Run 357 stress 0.06881672
## ... Procrustes: rmse 7.36463e-05 max resid 0.0001636005
## ... Similar to previous best
## Run 358 stress 0.07332518
## Run 359 stress 0.07611888
## Run 360 stress 0.06951347
## Run 361 stress 0.0696175
## Run 362 stress 0.06961782
## Run 363 stress 0.3434698
## Run 364 stress 0.06961748
## Run 365 stress 0.06973632
## Run 366 stress 0.06961875
## Run 367 stress 0.06961875
## Run 368 stress 0.06961709
## Run 369 stress 0.07411112
## Run 370 stress 0.281914
## Run 371 stress 0.06961798
## Run 372 stress 0.06961767
## Run 373 stress 0.0696186
## Run 374 stress 0.06961796
## Run 375 stress 0.06951342
## Run 376 stress 0.06961834
## Run 377 stress 0.06961727
## Run 378 stress 0.06973608
## Run 379 stress 0.0697362
## Run 380 stress 0.07332513
## Run 381 stress 0.06961789
## Run 382 stress 0.06951371
## Run 383 stress 0.06881672
## ... Procrustes: rmse 0.000119083 max resid 0.0002760418
## ... Similar to previous best
## Run 384 stress 0.06951365
## Run 385 stress 0.06961768
## Run 386 stress 0.0688168
## ... Procrustes: rmse 0.0001974216 max resid 0.0004550445
## ... Similar to previous best
## Run 387 stress 0.06951352
## Run 388 stress 0.06961756
## Run 389 stress 0.07611917
## Run 390 stress 0.06961767
## Run 391 stress 0.06881669
## ... Procrustes: rmse 8.464747e-05 max resid 0.0002005005
## ... Similar to previous best
## Run 392 stress 0.06951374
## Run 393 stress 0.06961856
## Run 394 stress 0.06961792
## Run 395 stress 0.06973642
## Run 396 stress 0.06961795
## Run 397 stress 0.06973621
## Run 398 stress 0.06881667
## ... Procrustes: rmse 4.920403e-05 max resid 0.000112245
## ... Similar to previous best
## Run 399 stress 0.06881675
## ... Procrustes: rmse 0.0001521311 max resid 0.000359777
## ... Similar to previous best
## Run 400 stress 0.06961745
## Run 401 stress 0.06951322
## Run 402 stress 0.06881667
## ... Procrustes: rmse 4.140199e-05 max resid 9.628655e-05
## ... Similar to previous best
## Run 403 stress 0.06973619
## Run 404 stress 0.07611917
## Run 405 stress 0.06961862
## Run 406 stress 0.3239233
## Run 407 stress 0.06961823
## Run 408 stress 0.06961756
## Run 409 stress 0.07611909
## Run 410 stress 0.06961763
## Run 411 stress 0.06961844
## Run 412 stress 0.06973621
## Run 413 stress 0.06881667
## ... Procrustes: rmse 2.152617e-05 max resid 4.851486e-05
## ... Similar to previous best
## Run 414 stress 0.0696176
## Run 415 stress 0.06881677
## ... Procrustes: rmse 0.0001621184 max resid 0.0003711545
## ... Similar to previous best
## Run 416 stress 0.0733252
## Run 417 stress 0.06961752
## Run 418 stress 0.06961708
## Run 419 stress 0.06881671
## ... Procrustes: rmse 9.565065e-05 max resid 0.0002210306
## ... Similar to previous best
## Run 420 stress 0.06881669
## ... Procrustes: rmse 6.640822e-05 max resid 0.0001556615
## ... Similar to previous best
## Run 421 stress 0.06961748
## Run 422 stress 0.06973615
## Run 423 stress 0.06961771
## Run 424 stress 0.07611898
## Run 425 stress 0.06973601
## Run 426 stress 0.06881668
## ... Procrustes: rmse 4.487763e-05 max resid 0.0001030031
## ... Similar to previous best
## Run 427 stress 0.06881671
## ... Procrustes: rmse 0.0001088856 max resid 0.000253812
## ... Similar to previous best
## Run 428 stress 0.06951385
## Run 429 stress 0.07411118
## Run 430 stress 0.0695137
## Run 431 stress 0.07431141
## Run 432 stress 0.06961789
## Run 433 stress 0.06973629
## Run 434 stress 0.06961758
## Run 435 stress 0.06881667
## ... Procrustes: rmse 1.3746e-05 max resid 3.217639e-05
## ... Similar to previous best
## Run 436 stress 0.06973628
## Run 437 stress 0.06961756
## Run 438 stress 0.06881667
## ... Procrustes: rmse 3.097521e-05 max resid 7.33678e-05
## ... Similar to previous best
## Run 439 stress 0.06961856
## Run 440 stress 0.06881667
## ... Procrustes: rmse 6.478784e-06 max resid 1.472503e-05
## ... Similar to previous best
## Run 441 stress 0.06961846
## Run 442 stress 0.07332524
## Run 443 stress 0.07611901
## Run 444 stress 0.06951348
## Run 445 stress 0.06961836
## Run 446 stress 0.06961727
## Run 447 stress 0.07332517
## Run 448 stress 0.3531018
## Run 449 stress 0.07611915
## Run 450 stress 0.0761192
## Run 451 stress 0.07411107
## Run 452 stress 0.2802482
## Run 453 stress 0.0688167
## ... Procrustes: rmse 8.03064e-05 max resid 0.0001819785
## ... Similar to previous best
## Run 454 stress 0.06881669
## ... Procrustes: rmse 6.160637e-05 max resid 0.000139406
## ... Similar to previous best
## Run 455 stress 0.0695137
## Run 456 stress 0.06881668
## ... Procrustes: rmse 3.798151e-05 max resid 8.807224e-05
## ... Similar to previous best
## Run 457 stress 0.06961841
## Run 458 stress 0.06961729
## Run 459 stress 0.06961814
## Run 460 stress 0.06881667
## ... Procrustes: rmse 1.123307e-05 max resid 2.174909e-05
## ... Similar to previous best
## Run 461 stress 0.06881667
## ... Procrustes: rmse 1.183252e-05 max resid 2.461427e-05
## ... Similar to previous best
## Run 462 stress 0.06951392
## Run 463 stress 0.07411125
## Run 464 stress 0.0696173
## Run 465 stress 0.06961831
## Run 466 stress 0.06973635
## Run 467 stress 0.06961872
## Run 468 stress 0.06961697
## Run 469 stress 0.06951353
## Run 470 stress 0.06881667
## ... Procrustes: rmse 4.621615e-06 max resid 6.883946e-06
## ... Similar to previous best
## Run 471 stress 0.06973607
## Run 472 stress 0.06961819
## Run 473 stress 0.06961716
## Run 474 stress 0.06881668
## ... Procrustes: rmse 4.083709e-05 max resid 9.21307e-05
## ... Similar to previous best
## Run 475 stress 0.07332499
## Run 476 stress 0.06961822
## Run 477 stress 0.06973616
## Run 478 stress 0.06881679
## ... Procrustes: rmse 0.0001722213 max resid 0.0003941547
## ... Similar to previous best
## Run 479 stress 0.3330626
## Run 480 stress 0.06961842
## Run 481 stress 0.06961773
## Run 482 stress 0.06961696
## Run 483 stress 0.06881669
## ... Procrustes: rmse 8.115581e-05 max resid 0.0001871465
## ... Similar to previous best
## Run 484 stress 0.06881673
## ... Procrustes: rmse 0.0001374121 max resid 0.0003190196
## ... Similar to previous best
## Run 485 stress 0.06881668
## ... Procrustes: rmse 5.404837e-05 max resid 0.0001261247
## ... Similar to previous best
## Run 486 stress 0.06973603
## Run 487 stress 0.07332499
## Run 488 stress 0.06973631
## Run 489 stress 0.06881667
## ... Procrustes: rmse 1.894405e-05 max resid 4.506082e-05
## ... Similar to previous best
## Run 490 stress 0.06961806
## Run 491 stress 0.0688167
## ... Procrustes: rmse 8.525537e-05 max resid 0.0001959511
## ... Similar to previous best
## Run 492 stress 0.07411114
## Run 493 stress 0.0697362
## Run 494 stress 0.06973604
## Run 495 stress 0.06881672
## ... Procrustes: rmse 0.0001101126 max resid 0.0002628258
## ... Similar to previous best
## Run 496 stress 0.07332502
## Run 497 stress 0.06961752
## Run 498 stress 0.06973639
## Run 499 stress 0.0688167
## ... Procrustes: rmse 4.21932e-05 max resid 8.076432e-05
## ... Similar to previous best
## Run 500 stress 0.06961783
## *** Best solution repeated 76 times# Stratified lakes and ocean sites
jpresbso_NMDS <- metaMDS(jpresbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08013059
## Run 1 stress 0.07081974
## ... New best solution
## ... Procrustes: rmse 0.1001537 max resid 0.2610525
## Run 2 stress 0.07081979
## ... Procrustes: rmse 3.78897e-05 max resid 0.0001001369
## ... Similar to previous best
## Run 3 stress 0.08028808
## Run 4 stress 0.08013059
## Run 5 stress 0.08028806
## Run 6 stress 0.08679565
## Run 7 stress 0.08028807
## Run 8 stress 0.07081961
## ... New best solution
## ... Procrustes: rmse 0.0001890956 max resid 0.0005049454
## ... Similar to previous best
## Run 9 stress 0.0843384
## Run 10 stress 0.08028806
## Run 11 stress 0.09109115
## Run 12 stress 0.08013059
## Run 13 stress 0.08679567
## Run 14 stress 0.07081969
## ... Procrustes: rmse 0.0001550354 max resid 0.0004097534
## ... Similar to previous best
## Run 15 stress 0.08013059
## Run 16 stress 0.08679567
## Run 17 stress 0.08028806
## Run 18 stress 0.09109113
## Run 19 stress 0.07081961
## ... Procrustes: rmse 6.66682e-05 max resid 0.0001764658
## ... Similar to previous best
## Run 20 stress 0.0726393
## Run 21 stress 0.07081968
## ... Procrustes: rmse 0.0001827885 max resid 0.0004861563
## ... Similar to previous best
## Run 22 stress 0.07081978
## ... Procrustes: rmse 0.000262568 max resid 0.0006984798
## ... Similar to previous best
## Run 23 stress 0.08199752
## Run 24 stress 0.08433838
## Run 25 stress 0.08013059
## Run 26 stress 0.08679566
## Run 27 stress 0.08013059
## Run 28 stress 0.08433838
## Run 29 stress 0.07081971
## ... Procrustes: rmse 0.0001515071 max resid 0.0004054493
## ... Similar to previous best
## Run 30 stress 0.07263931
## Run 31 stress 0.07081961
## ... Procrustes: rmse 1.998855e-05 max resid 5.109347e-05
## ... Similar to previous best
## Run 32 stress 0.08013059
## Run 33 stress 0.07263932
## Run 34 stress 0.09109112
## Run 35 stress 0.07081961
## ... New best solution
## ... Procrustes: rmse 1.494918e-05 max resid 3.564356e-05
## ... Similar to previous best
## Run 36 stress 0.08679566
## Run 37 stress 0.0843384
## Run 38 stress 0.08028807
## Run 39 stress 0.07081965
## ... Procrustes: rmse 0.0001387879 max resid 0.0003704447
## ... Similar to previous best
## Run 40 stress 0.08013059
## Run 41 stress 0.08013059
## Run 42 stress 0.08013059
## Run 43 stress 0.08199752
## Run 44 stress 0.07081961
## ... Procrustes: rmse 3.279654e-05 max resid 8.728061e-05
## ... Similar to previous best
## Run 45 stress 0.08433843
## Run 46 stress 0.08028807
## Run 47 stress 0.08028808
## Run 48 stress 0.07081971
## ... Procrustes: rmse 0.0001929146 max resid 0.0005164706
## ... Similar to previous best
## Run 49 stress 0.08013059
## Run 50 stress 0.0801306
## Run 51 stress 0.08013059
## Run 52 stress 0.09109119
## Run 53 stress 0.07063383
## ... New best solution
## ... Procrustes: rmse 0.01424412 max resid 0.03135559
## Run 54 stress 0.08028807
## Run 55 stress 0.08433841
## Run 56 stress 0.08028807
## Run 57 stress 0.07081963
## ... Procrustes: rmse 0.01421975 max resid 0.031086
## Run 58 stress 0.08679565
## Run 59 stress 0.07263929
## Run 60 stress 0.08028806
## Run 61 stress 0.08028807
## Run 62 stress 0.07263929
## Run 63 stress 0.08679564
## Run 64 stress 0.07263929
## Run 65 stress 0.08679567
## Run 66 stress 0.08028806
## Run 67 stress 0.09109114
## Run 68 stress 0.08013059
## Run 69 stress 0.07081969
## ... Procrustes: rmse 0.01415311 max resid 0.03100573
## Run 70 stress 0.08679568
## Run 71 stress 0.07263929
## Run 72 stress 0.08028806
## Run 73 stress 0.08679565
## Run 74 stress 0.08679565
## Run 75 stress 0.08199752
## Run 76 stress 0.08028807
## Run 77 stress 0.08199752
## Run 78 stress 0.08199753
## Run 79 stress 0.08679564
## Run 80 stress 0.08028806
## Run 81 stress 0.07263929
## Run 82 stress 0.08028808
## Run 83 stress 0.09109114
## Run 84 stress 0.08028807
## Run 85 stress 0.07063381
## ... New best solution
## ... Procrustes: rmse 7.516114e-05 max resid 0.0002044182
## ... Similar to previous best
## Run 86 stress 0.07263932
## Run 87 stress 0.08013059
## Run 88 stress 0.08028806
## Run 89 stress 0.0843384
## Run 90 stress 0.07081961
## ... Procrustes: rmse 0.01429578 max resid 0.03117511
## Run 91 stress 0.09109118
## Run 92 stress 0.07263938
## Run 93 stress 0.08013059
## Run 94 stress 0.09109113
## Run 95 stress 0.08013059
## Run 96 stress 0.08013059
## Run 97 stress 0.07263929
## Run 98 stress 0.07263929
## Run 99 stress 0.08199752
## Run 100 stress 0.08013059
## Run 101 stress 0.07081965
## ... Procrustes: rmse 0.01422357 max resid 0.03109471
## Run 102 stress 0.08028807
## Run 103 stress 0.08028806
## Run 104 stress 0.07081967
## ... Procrustes: rmse 0.01420383 max resid 0.03107301
## Run 105 stress 0.08199753
## Run 106 stress 0.09109114
## Run 107 stress 0.08013059
## Run 108 stress 0.08028807
## Run 109 stress 0.08028806
## Run 110 stress 0.08013059
## Run 111 stress 0.08028806
## Run 112 stress 0.08433845
## Run 113 stress 0.08028807
## Run 114 stress 0.07263929
## Run 115 stress 0.07081965
## ... Procrustes: rmse 0.01422292 max resid 0.03109463
## Run 116 stress 0.08028806
## Run 117 stress 0.08679565
## Run 118 stress 0.07263929
## Run 119 stress 0.07063388
## ... Procrustes: rmse 0.000150382 max resid 0.0004115433
## ... Similar to previous best
## Run 120 stress 0.08199753
## Run 121 stress 0.07081962
## ... Procrustes: rmse 0.01430211 max resid 0.03118049
## Run 122 stress 0.07063387
## ... Procrustes: rmse 0.0001374305 max resid 0.0003763995
## ... Similar to previous best
## Run 123 stress 0.0726393
## Run 124 stress 0.07081967
## ... Procrustes: rmse 0.01435682 max resid 0.03123882
## Run 125 stress 0.08199752
## Run 126 stress 0.08679567
## Run 127 stress 0.07081968
## ... Procrustes: rmse 0.01436516 max resid 0.03124821
## Run 128 stress 0.08028807
## Run 129 stress 0.08679566
## Run 130 stress 0.08679568
## Run 131 stress 0.07063391
## ... Procrustes: rmse 0.0001768843 max resid 0.0004845858
## ... Similar to previous best
## Run 132 stress 0.07263929
## Run 133 stress 0.0726393
## Run 134 stress 0.08013059
## Run 135 stress 0.07081966
## ... Procrustes: rmse 0.01421589 max resid 0.03108847
## Run 136 stress 0.09109112
## Run 137 stress 0.07081975
## ... Procrustes: rmse 0.01416705 max resid 0.03103413
## Run 138 stress 0.08679564
## Run 139 stress 0.07263929
## Run 140 stress 0.08013059
## Run 141 stress 0.07081962
## ... Procrustes: rmse 0.01425034 max resid 0.03112416
## Run 142 stress 0.07081962
## ... Procrustes: rmse 0.01425371 max resid 0.03112897
## Run 143 stress 0.0959007
## Run 144 stress 0.0867957
## Run 145 stress 0.08028806
## Run 146 stress 0.08433841
## Run 147 stress 0.08199753
## Run 148 stress 0.07263929
## Run 149 stress 0.08028806
## Run 150 stress 0.07063383
## ... Procrustes: rmse 8.429331e-05 max resid 0.0002298083
## ... Similar to previous best
## Run 151 stress 0.08028806
## Run 152 stress 0.0726393
## Run 153 stress 0.08028806
## Run 154 stress 0.08013061
## Run 155 stress 0.07081961
## ... Procrustes: rmse 0.01429539 max resid 0.03117199
## Run 156 stress 0.08199752
## Run 157 stress 0.08028807
## Run 158 stress 0.07081973
## ... Procrustes: rmse 0.01417451 max resid 0.03104143
## Run 159 stress 0.08013059
## Run 160 stress 0.08199753
## Run 161 stress 0.07063383
## ... Procrustes: rmse 7.825174e-05 max resid 0.0002143279
## ... Similar to previous best
## Run 162 stress 0.08679565
## Run 163 stress 0.07081966
## ... Procrustes: rmse 0.01434689 max resid 0.03122701
## Run 164 stress 0.07081962
## ... Procrustes: rmse 0.01431822 max resid 0.03119753
## Run 165 stress 0.08013063
## Run 166 stress 0.07263931
## Run 167 stress 0.08028806
## Run 168 stress 0.07081961
## ... Procrustes: rmse 0.01430191 max resid 0.03118062
## Run 169 stress 0.08679565
## Run 170 stress 0.07063389
## ... Procrustes: rmse 0.0001317398 max resid 0.0003557566
## ... Similar to previous best
## Run 171 stress 0.07081968
## ... Procrustes: rmse 0.01420734 max resid 0.03107967
## Run 172 stress 0.08028806
## Run 173 stress 0.08199755
## Run 174 stress 0.08028807
## Run 175 stress 0.08199752
## Run 176 stress 0.07081962
## ... Procrustes: rmse 0.01425387 max resid 0.03112705
## Run 177 stress 0.07063381
## ... Procrustes: rmse 1.775484e-05 max resid 4.784436e-05
## ... Similar to previous best
## Run 178 stress 0.08199753
## Run 179 stress 0.08679565
## Run 180 stress 0.08199752
## Run 181 stress 0.08199752
## Run 182 stress 0.07081972
## ... Procrustes: rmse 0.01418382 max resid 0.03105275
## Run 183 stress 0.07263929
## Run 184 stress 0.0801306
## Run 185 stress 0.09109121
## Run 186 stress 0.07263934
## Run 187 stress 0.07081971
## ... Procrustes: rmse 0.01437116 max resid 0.031258
## Run 188 stress 0.08013059
## Run 189 stress 0.08679564
## Run 190 stress 0.07081969
## ... Procrustes: rmse 0.01436977 max resid 0.03125371
## Run 191 stress 0.07063388
## ... Procrustes: rmse 0.0001510932 max resid 0.000413399
## ... Similar to previous best
## Run 192 stress 0.08679565
## Run 193 stress 0.08679565
## Run 194 stress 0.07081971
## ... Procrustes: rmse 0.01438225 max resid 0.03126758
## Run 195 stress 0.07263929
## Run 196 stress 0.08028806
## Run 197 stress 0.07081961
## ... Procrustes: rmse 0.01428678 max resid 0.03116459
## Run 198 stress 0.07081961
## ... Procrustes: rmse 0.01428318 max resid 0.03116024
## Run 199 stress 0.08199754
## Run 200 stress 0.09590076
## Run 201 stress 0.08679565
## Run 202 stress 0.08679565
## Run 203 stress 0.07063381
## ... Procrustes: rmse 1.089782e-05 max resid 2.97928e-05
## ... Similar to previous best
## Run 204 stress 0.07081983
## ... Procrustes: rmse 0.01414056 max resid 0.03100407
## Run 205 stress 0.07263929
## Run 206 stress 0.0843384
## Run 207 stress 0.09576452
## Run 208 stress 0.0726393
## Run 209 stress 0.08433838
## Run 210 stress 0.08013059
## Run 211 stress 0.08199752
## Run 212 stress 0.08199757
## Run 213 stress 0.07081966
## ... Procrustes: rmse 0.01422222 max resid 0.03109105
## Run 214 stress 0.07063391
## ... Procrustes: rmse 0.0001496024 max resid 0.0004053477
## ... Similar to previous best
## Run 215 stress 0.07081961
## ... Procrustes: rmse 0.014263 max resid 0.03113844
## Run 216 stress 0.07081961
## ... Procrustes: rmse 0.01427665 max resid 0.03115588
## Run 217 stress 0.08679566
## Run 218 stress 0.07263929
## Run 219 stress 0.08028806
## Run 220 stress 0.07081963
## ... Procrustes: rmse 0.01423366 max resid 0.03110581
## Run 221 stress 0.08028807
## Run 222 stress 0.07081968
## ... Procrustes: rmse 0.01420332 max resid 0.03107296
## Run 223 stress 0.0726393
## Run 224 stress 0.07063383
## ... Procrustes: rmse 5.51975e-05 max resid 0.0001480196
## ... Similar to previous best
## Run 225 stress 0.09109113
## Run 226 stress 0.07063388
## ... Procrustes: rmse 0.0001410247 max resid 0.000383789
## ... Similar to previous best
## Run 227 stress 0.07081963
## ... Procrustes: rmse 0.01432474 max resid 0.03120498
## Run 228 stress 0.08199756
## Run 229 stress 0.08013059
## Run 230 stress 0.08679565
## Run 231 stress 0.0843384
## Run 232 stress 0.08028807
## Run 233 stress 0.08679564
## Run 234 stress 0.08679564
## Run 235 stress 0.0726393
## Run 236 stress 0.07063381
## ... Procrustes: rmse 3.382482e-05 max resid 9.358182e-05
## ... Similar to previous best
## Run 237 stress 0.07081961
## ... Procrustes: rmse 0.01427328 max resid 0.03115048
## Run 238 stress 0.08199753
## Run 239 stress 0.08199752
## Run 240 stress 0.09109113
## Run 241 stress 0.07081975
## ... Procrustes: rmse 0.01417027 max resid 0.03103504
## Run 242 stress 0.07081968
## ... Procrustes: rmse 0.0143641 max resid 0.0312477
## Run 243 stress 0.08028807
## Run 244 stress 0.07081974
## ... Procrustes: rmse 0.01439651 max resid 0.03128098
## Run 245 stress 0.08028806
## Run 246 stress 0.07081961
## ... Procrustes: rmse 0.01429791 max resid 0.03117556
## Run 247 stress 0.08679565
## Run 248 stress 0.07063386
## ... Procrustes: rmse 0.0001153285 max resid 0.000316423
## ... Similar to previous best
## Run 249 stress 0.0801306
## Run 250 stress 0.08013059
## Run 251 stress 0.08028806
## Run 252 stress 0.08433842
## Run 253 stress 0.07081968
## ... Procrustes: rmse 0.0142019 max resid 0.03107009
## Run 254 stress 0.07263932
## Run 255 stress 0.07081963
## ... Procrustes: rmse 0.01423339 max resid 0.03110617
## Run 256 stress 0.08013059
## Run 257 stress 0.07081961
## ... Procrustes: rmse 0.01429778 max resid 0.03117646
## Run 258 stress 0.08028807
## Run 259 stress 0.07063384
## ... Procrustes: rmse 8.345143e-05 max resid 0.0002253497
## ... Similar to previous best
## Run 260 stress 0.08013059
## Run 261 stress 0.07263931
## Run 262 stress 0.07263931
## Run 263 stress 0.07263931
## Run 264 stress 0.07081965
## ... Procrustes: rmse 0.01422525 max resid 0.03109904
## Run 265 stress 0.08028808
## Run 266 stress 0.08679564
## Run 267 stress 0.07081961
## ... Procrustes: rmse 0.0143 max resid 0.03117936
## Run 268 stress 0.08028809
## Run 269 stress 0.0726393
## Run 270 stress 0.09109115
## Run 271 stress 0.08679564
## Run 272 stress 0.08679564
## Run 273 stress 0.08013059
## Run 274 stress 0.0801306
## Run 275 stress 0.08028807
## Run 276 stress 0.07063384
## ... Procrustes: rmse 9.568844e-05 max resid 0.0002614002
## ... Similar to previous best
## Run 277 stress 0.08679568
## Run 278 stress 0.08199752
## Run 279 stress 0.08199752
## Run 280 stress 0.07081975
## ... Procrustes: rmse 0.01416876 max resid 0.03103664
## Run 281 stress 0.08433842
## Run 282 stress 0.07081967
## ... Procrustes: rmse 0.01421004 max resid 0.03107947
## Run 283 stress 0.09109116
## Run 284 stress 0.08013059
## Run 285 stress 0.08433843
## Run 286 stress 0.08013061
## Run 287 stress 0.07263929
## Run 288 stress 0.07081962
## ... Procrustes: rmse 0.01431869 max resid 0.03119823
## Run 289 stress 0.08199753
## Run 290 stress 0.07081961
## ... Procrustes: rmse 0.01428055 max resid 0.03116002
## Run 291 stress 0.09109119
## Run 292 stress 0.07063391
## ... Procrustes: rmse 0.0001621985 max resid 0.0004469252
## ... Similar to previous best
## Run 293 stress 0.08199752
## Run 294 stress 0.07263929
## Run 295 stress 0.0801306
## Run 296 stress 0.07063388
## ... Procrustes: rmse 0.0001310701 max resid 0.0003553815
## ... Similar to previous best
## Run 297 stress 0.08199753
## Run 298 stress 0.07081962
## ... Procrustes: rmse 0.01431736 max resid 0.03119724
## Run 299 stress 0.07263932
## Run 300 stress 0.08028807
## Run 301 stress 0.08013059
## Run 302 stress 0.07081972
## ... Procrustes: rmse 0.01417822 max resid 0.03104458
## Run 303 stress 0.08679567
## Run 304 stress 0.08028807
## Run 305 stress 0.0726393
## Run 306 stress 0.07081961
## ... Procrustes: rmse 0.01426856 max resid 0.03114448
## Run 307 stress 0.08028806
## Run 308 stress 0.08199756
## Run 309 stress 0.0801306
## Run 310 stress 0.07081971
## ... Procrustes: rmse 0.0141865 max resid 0.03105583
## Run 311 stress 0.08028806
## Run 312 stress 0.07063381
## ... Procrustes: rmse 2.300385e-05 max resid 6.265534e-05
## ... Similar to previous best
## Run 313 stress 0.08679575
## Run 314 stress 0.07263929
## Run 315 stress 0.08199752
## Run 316 stress 0.07081963
## ... Procrustes: rmse 0.01423643 max resid 0.03110854
## Run 317 stress 0.07063382
## ... Procrustes: rmse 4.470335e-05 max resid 0.0001214088
## ... Similar to previous best
## Run 318 stress 0.07081961
## ... Procrustes: rmse 0.0143001 max resid 0.03117852
## Run 319 stress 0.08028806
## Run 320 stress 0.08433838
## Run 321 stress 0.08013059
## Run 322 stress 0.07081969
## ... Procrustes: rmse 0.01419293 max resid 0.03106106
## Run 323 stress 0.0867957
## Run 324 stress 0.08013059
## Run 325 stress 0.07081961
## ... Procrustes: rmse 0.01425843 max resid 0.03113421
## Run 326 stress 0.0843384
## Run 327 stress 0.07063391
## ... Procrustes: rmse 0.0001636314 max resid 0.0004500007
## ... Similar to previous best
## Run 328 stress 0.07063383
## ... Procrustes: rmse 7.525411e-05 max resid 0.0002040844
## ... Similar to previous best
## Run 329 stress 0.07081965
## ... Procrustes: rmse 0.01434722 max resid 0.03122915
## Run 330 stress 0.07081961
## ... Procrustes: rmse 0.01427817 max resid 0.03115457
## Run 331 stress 0.07263929
## Run 332 stress 0.08013061
## Run 333 stress 0.08028808
## Run 334 stress 0.07263929
## Run 335 stress 0.07081961
## ... Procrustes: rmse 0.01430478 max resid 0.031184
## Run 336 stress 0.0726393
## Run 337 stress 0.08013059
## Run 338 stress 0.07263929
## Run 339 stress 0.08199753
## Run 340 stress 0.07263931
## Run 341 stress 0.08199753
## Run 342 stress 0.07263931
## Run 343 stress 0.07081962
## ... Procrustes: rmse 0.01431172 max resid 0.0311921
## Run 344 stress 0.0726393
## Run 345 stress 0.07081963
## ... Procrustes: rmse 0.01424253 max resid 0.03111449
## Run 346 stress 0.08028806
## Run 347 stress 0.08028806
## Run 348 stress 0.0843384
## Run 349 stress 0.07081963
## ... Procrustes: rmse 0.01423637 max resid 0.03111005
## Run 350 stress 0.08199752
## Run 351 stress 0.07263931
## Run 352 stress 0.07081961
## ... Procrustes: rmse 0.0142946 max resid 0.03117201
## Run 353 stress 0.07081981
## ... Procrustes: rmse 0.01414497 max resid 0.03100828
## Run 354 stress 0.07081975
## ... Procrustes: rmse 0.01438755 max resid 0.03126908
## Run 355 stress 0.07063383
## ... Procrustes: rmse 8.958965e-05 max resid 0.0002457189
## ... Similar to previous best
## Run 356 stress 0.08028807
## Run 357 stress 0.07081963
## ... Procrustes: rmse 0.01424504 max resid 0.03111978
## Run 358 stress 0.08199752
## Run 359 stress 0.07263929
## Run 360 stress 0.08013059
## Run 361 stress 0.07063383
## ... Procrustes: rmse 7.111712e-05 max resid 0.0001968363
## ... Similar to previous best
## Run 362 stress 0.08679565
## Run 363 stress 0.07263929
## Run 364 stress 0.08199752
## Run 365 stress 0.0843384
## Run 366 stress 0.07081963
## ... Procrustes: rmse 0.01423595 max resid 0.03110921
## Run 367 stress 0.08199752
## Run 368 stress 0.08013059
## Run 369 stress 0.07081962
## ... Procrustes: rmse 0.01424905 max resid 0.03112362
## Run 370 stress 0.08679565
## Run 371 stress 0.0726393
## Run 372 stress 0.08433848
## Run 373 stress 0.08028806
## Run 374 stress 0.07081969
## ... Procrustes: rmse 0.01436989 max resid 0.03125476
## Run 375 stress 0.07263929
## Run 376 stress 0.08028806
## Run 377 stress 0.08433845
## Run 378 stress 0.08199752
## Run 379 stress 0.0708197
## ... Procrustes: rmse 0.01418888 max resid 0.03105651
## Run 380 stress 0.07081974
## ... Procrustes: rmse 0.01439272 max resid 0.03127962
## Run 381 stress 0.08199753
## Run 382 stress 0.07063388
## ... Procrustes: rmse 0.0001530937 max resid 0.0004193015
## ... Similar to previous best
## Run 383 stress 0.08199752
## Run 384 stress 0.08013059
## Run 385 stress 0.08199752
## Run 386 stress 0.07263929
## Run 387 stress 0.08679568
## Run 388 stress 0.07081969
## ... Procrustes: rmse 0.01419712 max resid 0.03106547
## Run 389 stress 0.07263929
## Run 390 stress 0.07063389
## ... Procrustes: rmse 0.0001473167 max resid 0.0003999417
## ... Similar to previous best
## Run 391 stress 0.08679567
## Run 392 stress 0.08199752
## Run 393 stress 0.07063386
## ... Procrustes: rmse 0.0001186927 max resid 0.0003246023
## ... Similar to previous best
## Run 394 stress 0.07063383
## ... Procrustes: rmse 7.632437e-05 max resid 0.0002090965
## ... Similar to previous best
## Run 395 stress 0.08433849
## Run 396 stress 0.07081965
## ... Procrustes: rmse 0.01434319 max resid 0.03122356
## Run 397 stress 0.08028807
## Run 398 stress 0.08013059
## Run 399 stress 0.08679565
## Run 400 stress 0.2845319
## Run 401 stress 0.07081964
## ... Procrustes: rmse 0.01423058 max resid 0.03110431
## Run 402 stress 0.07081975
## ... Procrustes: rmse 0.01416635 max resid 0.03103212
## Run 403 stress 0.07081965
## ... Procrustes: rmse 0.0142214 max resid 0.03109254
## Run 404 stress 0.07081973
## ... Procrustes: rmse 0.01439163 max resid 0.03127558
## Run 405 stress 0.07263929
## Run 406 stress 0.08199752
## Run 407 stress 0.08679564
## Run 408 stress 0.08028807
## Run 409 stress 0.08199752
## Run 410 stress 0.0726393
## Run 411 stress 0.08028808
## Run 412 stress 0.07263929
## Run 413 stress 0.07263929
## Run 414 stress 0.08679568
## Run 415 stress 0.08013059
## Run 416 stress 0.0726393
## Run 417 stress 0.08028807
## Run 418 stress 0.08433843
## Run 419 stress 0.08199752
## Run 420 stress 0.08199752
## Run 421 stress 0.08028806
## Run 422 stress 0.07081972
## ... Procrustes: rmse 0.01418406 max resid 0.03105358
## Run 423 stress 0.08679564
## Run 424 stress 0.08013059
## Run 425 stress 0.07081964
## ... Procrustes: rmse 0.01422858 max resid 0.03110181
## Run 426 stress 0.07263931
## Run 427 stress 0.08199754
## Run 428 stress 0.08199752
## Run 429 stress 0.07081971
## ... Procrustes: rmse 0.01438133 max resid 0.03126661
## Run 430 stress 0.09241919
## Run 431 stress 0.0708197
## ... Procrustes: rmse 0.01437306 max resid 0.03125485
## Run 432 stress 0.0726393
## Run 433 stress 0.07063381
## ... Procrustes: rmse 2.124456e-05 max resid 4.228447e-05
## ... Similar to previous best
## Run 434 stress 0.08199752
## Run 435 stress 0.07263932
## Run 436 stress 0.08013059
## Run 437 stress 0.07063386
## ... Procrustes: rmse 0.0001015807 max resid 0.0002742963
## ... Similar to previous best
## Run 438 stress 0.0726393
## Run 439 stress 0.0726393
## Run 440 stress 0.08028806
## Run 441 stress 0.08013059
## Run 442 stress 0.08028806
## Run 443 stress 0.07263929
## Run 444 stress 0.07063382
## ... Procrustes: rmse 4.734342e-05 max resid 0.0001261375
## ... Similar to previous best
## Run 445 stress 0.07081969
## ... Procrustes: rmse 0.01437442 max resid 0.03125855
## Run 446 stress 0.07263929
## Run 447 stress 0.0801306
## Run 448 stress 0.08028806
## Run 449 stress 0.07081969
## ... Procrustes: rmse 0.01437089 max resid 0.03125551
## Run 450 stress 0.0843384
## Run 451 stress 0.07263929
## Run 452 stress 0.0726393
## Run 453 stress 0.09109114
## Run 454 stress 0.08013059
## Run 455 stress 0.08013059
## Run 456 stress 0.07081971
## ... Procrustes: rmse 0.01419009 max resid 0.03105597
## Run 457 stress 0.07263929
## Run 458 stress 0.07399338
## Run 459 stress 0.07263929
## Run 460 stress 0.08013059
## Run 461 stress 0.08028807
## Run 462 stress 0.09109113
## Run 463 stress 0.07263929
## Run 464 stress 0.09109115
## Run 465 stress 0.08679565
## Run 466 stress 0.0726393
## Run 467 stress 0.08028807
## Run 468 stress 0.08679565
## Run 469 stress 0.08028807
## Run 470 stress 0.07263929
## Run 471 stress 0.07081966
## ... Procrustes: rmse 0.01420969 max resid 0.03108027
## Run 472 stress 0.07263929
## Run 473 stress 0.07081962
## ... Procrustes: rmse 0.01431928 max resid 0.03119962
## Run 474 stress 0.07081962
## ... Procrustes: rmse 0.01424653 max resid 0.03111957
## Run 475 stress 0.08679566
## Run 476 stress 0.08028806
## Run 477 stress 0.07263929
## Run 478 stress 0.07263929
## Run 479 stress 0.08028808
## Run 480 stress 0.08199753
## Run 481 stress 0.08433843
## Run 482 stress 0.08028808
## Run 483 stress 0.08433839
## Run 484 stress 0.09242
## Run 485 stress 0.07263929
## Run 486 stress 0.07081968
## ... Procrustes: rmse 0.0143655 max resid 0.03124935
## Run 487 stress 0.09241948
## Run 488 stress 0.08013059
## Run 489 stress 0.07081978
## ... Procrustes: rmse 0.01415635 max resid 0.03101971
## Run 490 stress 0.08199752
## Run 491 stress 0.09109118
## Run 492 stress 0.07081961
## ... Procrustes: rmse 0.01428679 max resid 0.03116347
## Run 493 stress 0.08013059
## Run 494 stress 0.08013059
## Run 495 stress 0.09109113
## Run 496 stress 0.08028809
## Run 497 stress 0.08199752
## Run 498 stress 0.08028806
## Run 499 stress 0.09109116
## Run 500 stress 0.08199752
## *** Best solution repeated 32 times## Dice-Sørensen
# All sites
spresb_NMDS <- metaMDS(spresb_dist, try = 1000, parallel = 4)## Run 0 stress 0.09072551
## Run 1 stress 0.09012992
## ... New best solution
## ... Procrustes: rmse 0.02527372 max resid 0.08903269
## Run 2 stress 0.1068691
## Run 3 stress 0.09072308
## Run 4 stress 0.09677541
## Run 5 stress 0.09072311
## Run 6 stress 0.09072546
## Run 7 stress 0.09161036
## Run 8 stress 0.09172712
## Run 9 stress 0.09702959
## Run 10 stress 0.09161029
## Run 11 stress 0.1077951
## Run 12 stress 0.0907231
## Run 13 stress 0.0912341
## Run 14 stress 0.09646576
## Run 15 stress 0.1073656
## Run 16 stress 0.091629
## Run 17 stress 0.0964678
## Run 18 stress 0.09396303
## Run 19 stress 0.1093943
## Run 20 stress 0.1067328
## *** Best solution was not repeated -- monoMDS stopping criteria:
## 20: stress ratio > sratmax# Mixed and stratified lakes
spresbms_NMDS <- metaMDS(spresbms_dist, try = 1000, parallel = 4)## Run 0 stress 0.08659677
## Run 1 stress 0.09610452
## Run 2 stress 0.0961045
## Run 3 stress 0.0870998
## Run 4 stress 0.09974303
## Run 5 stress 0.09610472
## Run 6 stress 0.09769941
## Run 7 stress 0.08709981
## Run 8 stress 0.08709983
## Run 9 stress 0.08709978
## Run 10 stress 0.100908
## Run 11 stress 0.08709978
## Run 12 stress 0.09719298
## Run 13 stress 0.08659685
## ... Procrustes: rmse 7.952364e-05 max resid 0.0001672202
## ... Similar to previous best
## Run 14 stress 0.09610452
## Run 15 stress 0.08659679
## ... Procrustes: rmse 3.427132e-05 max resid 7.298812e-05
## ... Similar to previous best
## Run 16 stress 0.1017605
## Run 17 stress 0.09659296
## Run 18 stress 0.08709989
## Run 19 stress 0.09669161
## Run 20 stress 0.09847318
## *** Best solution repeated 2 times# Ocean sites and mixed lakes
spresbom_NMDS <- metaMDS(spresbom_dist, try = 1000, parallel = 4)## Run 0 stress 0.06881667
## Run 1 stress 0.06973604
## Run 2 stress 0.06961699
## Run 3 stress 0.07332545
## Run 4 stress 0.06881667
## ... Procrustes: rmse 1.992341e-05 max resid 4.655303e-05
## ... Similar to previous best
## Run 5 stress 0.06973603
## Run 6 stress 0.06961726
## Run 7 stress 0.06961768
## Run 8 stress 0.06881667
## ... New best solution
## ... Procrustes: rmse 1.946106e-05 max resid 4.394894e-05
## ... Similar to previous best
## Run 9 stress 0.07430898
## Run 10 stress 0.3106852
## Run 11 stress 0.06961776
## Run 12 stress 0.06881668
## ... Procrustes: rmse 3.330181e-05 max resid 7.009159e-05
## ... Similar to previous best
## Run 13 stress 0.07611897
## Run 14 stress 0.06881669
## ... Procrustes: rmse 9.876388e-05 max resid 0.0002317418
## ... Similar to previous best
## Run 15 stress 0.06881668
## ... Procrustes: rmse 2.642974e-05 max resid 5.741425e-05
## ... Similar to previous best
## Run 16 stress 0.06961866
## Run 17 stress 0.06951398
## Run 18 stress 0.06961794
## Run 19 stress 0.06881672
## ... Procrustes: rmse 0.0001389615 max resid 0.0003262665
## ... Similar to previous best
## Run 20 stress 0.06961849
## *** Best solution repeated 5 times# Stratified lakes and ocean sites
spresbso_NMDS <- metaMDS(spresbso_dist, try = 1000, parallel = 4)## Run 0 stress 0.08013059
## Run 1 stress 0.08679565
## Run 2 stress 0.07081966
## ... New best solution
## ... Procrustes: rmse 0.1003425 max resid 0.2612304
## Run 3 stress 0.08199754
## Run 4 stress 0.07063391
## ... New best solution
## ... Procrustes: rmse 0.01410921 max resid 0.03118583
## Run 5 stress 0.09109114
## Run 6 stress 0.08679565
## Run 7 stress 0.08679565
## Run 8 stress 0.07081965
## ... Procrustes: rmse 0.01411174 max resid 0.0309457
## Run 9 stress 0.08013059
## Run 10 stress 0.08028806
## Run 11 stress 0.08028806
## Run 12 stress 0.07063385
## ... New best solution
## ... Procrustes: rmse 7.728451e-05 max resid 0.0002102095
## ... Similar to previous best
## Run 13 stress 0.07081971
## ... Procrustes: rmse 0.01412376 max resid 0.03097022
## Run 14 stress 0.07063384
## ... New best solution
## ... Procrustes: rmse 9.440731e-06 max resid 2.551935e-05
## ... Similar to previous best
## Run 15 stress 0.08028807
## Run 16 stress 0.07063389
## ... Procrustes: rmse 6.04064e-05 max resid 0.0001639898
## ... Similar to previous best
## Run 17 stress 0.07081961
## ... Procrustes: rmse 0.01423503 max resid 0.03109732
## Run 18 stress 0.08013059
## Run 19 stress 0.07081979
## ... Procrustes: rmse 0.01409855 max resid 0.03094419
## Run 20 stress 0.08679569
## *** Best solution repeated 2 timesDetermine stratification homogeneity using incidences
We use betadisper to determine homogeneity of the presence absence data based on the stratification category. Is the dispersion of incidences similar between the different stratifications.
## Stratification
# Jaccard
stratification_group_jpres_bd <- betadisper(jpres_dist, stratification_group)
anova(stratification_group_jpres_bd)## Analysis of Variance Table
##
## Response: Distances
## Df Sum Sq Mean Sq F value Pr(>F)
## Groups 2 0.001495 0.0007473 0.1275 0.881
## Residuals 19 0.111356 0.0058609permutest(stratification_group_jpres_bd, pairwise = TRUE)##
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
##
## Response: Distances
## Df Sum Sq Mean Sq F N.Perm Pr(>F)
## Groups 2 0.001495 0.0007473 0.1275 999 0.885
## Residuals 19 0.111356 0.0058609
##
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
## Mixed Ocean Stratified
## Mixed 0.82800 0.393
## Ocean 0.83147 0.867
## Stratified 0.41321 0.85898(stratification_group_jpres_bd.HSD <- TukeyHSD(stratification_group_jpres_bd))## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## Ocean-Mixed 0.010393222 -0.09464200 0.1154284 0.9658276
## Stratified-Mixed 0.019315395 -0.07792832 0.1165591 0.8699882
## Stratified-Ocean 0.008922173 -0.09611305 0.1139574 0.9746887boxplot(stratification_group_jpres_bd)
# Dice-Sørensen
stratification_group_spres_bd <- betadisper(spres_dist, stratification_group)
anova(stratification_group_spres_bd)## Analysis of Variance Table
##
## Response: Distances
## Df Sum Sq Mean Sq F value Pr(>F)
## Groups 2 0.004075 0.0020373 0.1745 0.8412
## Residuals 19 0.221851 0.0116764permutest(stratification_group_spres_bd, pairwise = TRUE)##
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
##
## Response: Distances
## Df Sum Sq Mean Sq F N.Perm Pr(>F)
## Groups 2 0.004075 0.0020373 0.1745 999 0.847
## Residuals 19 0.221851 0.0116764
##
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
## Mixed Ocean Stratified
## Mixed 0.72500 0.374
## Ocean 0.71901 0.943
## Stratified 0.36777 0.93989(stratification_group_spres_bd.HSD <- TukeyHSD(stratification_group_spres_bd))## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## Ocean-Mixed 0.024910614 -0.1233440 0.1731653 0.9049381
## Stratified-Mixed 0.030232187 -0.1070249 0.1674893 0.8428610
## Stratified-Ocean 0.005321574 -0.1429331 0.1535762 0.9954271boxplot(stratification_group_spres_bd)
Determine stratification dissimilarity using incidences
We use adonis to determine if dissimilarities of species incidences by stratification categories are significant and how much of the variation is explained by incidence dissimilarities.
### Stratification
## Jaccard
# All sites
jpres_pms <- adonis2(jpres_dist ~ env[-20,19], permutations = 999)
jpres_pms## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
##
## adonis2(formula = jpres_dist ~ env[-20, 19], permutations = 999)
## Df SumOfSqs R2 F Pr(>F)
## env[-20, 19] 2 2.1042 0.25523 3.2556 0.001 ***
## Residual 19 6.1401 0.74477
## Total 21 8.2443 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# By stratifcation
jpres_pms_pair <- pairwise.adonis(jpres_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
jpres_pms_pair## pairs Df SumsOfSqs F.Model R2 p.value p.adjusted sig
## 1 Stratified vs Mixed 1 1.3139866 4.158150 0.2289964 0.001 0.003 *
## 2 Stratified vs Ocean 1 1.3049256 3.903468 0.2454476 0.001 0.003 *
## 3 Mixed vs Ocean 1 0.4999441 1.560433 0.1150725 0.056 0.168## Dice-Sørensen
# All sites
spres_pms <- adonis2(spres_dist ~ env[-20,19], permutations = 999)
spres_pms## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
##
## adonis2(formula = spres_dist ~ env[-20, 19], permutations = 999)
## Df SumOfSqs R2 F Pr(>F)
## env[-20, 19] 2 2.5015 0.3572 5.2792 0.001 ***
## Residual 19 4.5016 0.6428
## Total 21 7.0032 1.0000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# By stratifcation
spres_pms_pair <- pairwise.adonis(spres_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
spres_pms_pair## pairs Df SumsOfSqs F.Model R2 p.value p.adjusted sig
## 1 Stratified vs Mixed 1 1.6177889 7.163751 0.3384916 0.001 0.003 *
## 2 Stratified vs Ocean 1 1.6459069 6.509883 0.3516977 0.001 0.003 *
## 3 Mixed vs Ocean 1 0.4361964 1.864338 0.1344700 0.074 0.222Envfit environmental influence on incidences
We use envfit to determine significantly correlated environmental variables to our NMDS. We will use these results, if significant, in our figure.
### Environmental
## Jaccard
# All sites for figure
jprese_ef <- envfit(jprese_NMDS, env[-c(9,16,18,20),c(36)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jprese_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.94641 0.32296 0.8332 0.002997 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jprese_efp <- p.adjust.envfit(jprese_ef)## Adjustment of significance by bonferroni methodjprese_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.94641 0.32296 0.8332 0.002997 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
jpresea_ef <- envfit(jprese_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jpresea_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.48785 -0.87293 0.0586 0.837163
## salinity_median 0.99783 -0.06587 0.7388 0.038961 *
## oxygen_median 0.79309 0.60911 0.5361 0.810190
## pH_median 0.94641 0.32296 0.8332 0.002997 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresea_efp <- p.adjust.envfit(jpresea_ef)## Adjustment of significance by bonferroni methodjpresea_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.48785 -0.87293 0.0586 1.00000
## salinity_median 0.99783 -0.06587 0.7388 0.15584
## oxygen_median 0.79309 0.60911 0.5361 1.00000
## pH_median 0.94641 0.32296 0.8332 0.01199 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
jpresems_ef <- envfit(jpresems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(10)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jpresems_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.96335 0.26825 0.803 0.000999 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresems_efp <- p.adjust.envfit(jpresems_ef)## Adjustment of significance by bonferroni methodjpresems_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.96335 0.26825 0.803 0.000999 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
jpreseom_ef <- envfit(jpreseom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(6)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
jpreseom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.78732 -0.61655 0.7842 0.00999 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpreseom_efp <- p.adjust.envfit(jpreseom_ef)## Adjustment of significance by bonferroni methodjpreseom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.78732 -0.61655 0.7842 0.00999 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
jpreseso_ef <- envfit(jpreseso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(8)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
jpreseso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.0031273 1.0000000 0.7187 0.6893
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpreseso_efp <- p.adjust.envfit(jpreseso_ef)## Adjustment of significance by bonferroni methodjpreseso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.0031273 1.0000000 0.7187 0.6893
## Blocks: strata
## Permutation: free
## Number of permutations: 1000## Dice-Sørensen
# All sites
sprese_ef <- envfit(sprese_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
sprese_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.84743 -0.53091 0.0491 0.890110
## salinity_median 0.99772 -0.06748 0.7375 0.032967 *
## oxygen_median 0.80429 0.59423 0.5363 0.822178
## pH_median 0.95061 0.31039 0.8373 0.002997 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000sprese_efp <- p.adjust.envfit(sprese_ef)## Adjustment of significance by bonferroni methodsprese_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.84743 -0.53091 0.0491 1.00000
## salinity_median 0.99772 -0.06748 0.7375 0.13187
## oxygen_median 0.80429 0.59423 0.5363 1.00000
## pH_median 0.95061 0.31039 0.8373 0.01199 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
spresems_ef <- envfit(spresems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
spresems_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.56404 -0.82575 0.0779 0.817183
## salinity_median 0.99172 0.12839 0.7458 0.033966 *
## oxygen_median 0.94200 0.33563 0.3552 0.901099
## pH_median 0.96324 0.26866 0.8030 0.001998 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spresems_efp <- p.adjust.envfit(spresems_ef)## Adjustment of significance by bonferroni methodspresems_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.56404 -0.82575 0.0779 1.000000
## salinity_median 0.99172 0.12839 0.7458 0.135864
## oxygen_median 0.94200 0.33563 0.3552 1.000000
## pH_median 0.96324 0.26866 0.8030 0.007992 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
spreseom_ef <- envfit(spreseom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
spreseom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median 0.10614 0.99435 0.0705 0.69530
## salinity_median 0.78732 -0.61654 0.7842 0.01299 *
## oxygen_median 0.96712 0.25433 0.7188 0.05095 .
## pH_median 0.81135 0.58456 0.6420 0.02098 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spreseom_efp <- p.adjust.envfit(spreseom_ef)## Adjustment of significance by bonferroni methodspreseom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median 0.10614 0.99435 0.0705 1.00000
## salinity_median 0.78732 -0.61654 0.7842 0.05195 .
## oxygen_median 0.96712 0.25433 0.7188 0.20380
## pH_median 0.81135 0.58456 0.6420 0.08392 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
spreseso_ef <- envfit(spreseso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
spreseso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.00026795 -1.00000000 0.0980 0.45355
## salinity_median 0.00052976 1.00000000 0.7665 0.01399 *
## oxygen_median 0.00118659 -1.00000000 0.7948 0.12288
## pH_median 0.00220519 1.00000000 0.6909 0.48751
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spreseso_efp <- p.adjust.envfit(spreseso_ef)## Adjustment of significance by bonferroni methodspreseso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.00026795 -1.00000000 0.0980 1.00000
## salinity_median 0.00052976 1.00000000 0.7665 0.05594 .
## oxygen_median 0.00118659 -1.00000000 0.7948 0.49151
## pH_median 0.00220519 1.00000000 0.6909 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
jpress_ef <- envfit(jpress_NMDS, env[c(1:2,4,5,12,17,21:22),c(2,6,8,10,22:32)], permutations = 1000, na.rm = TRUE)
jpress_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.35881 -0.93341 0.1965 0.6014
## salinity_median -0.70036 0.71379 0.5991 0.1349
## oxygen_median 0.98543 -0.17006 0.5185 0.1678
## pH_median -0.98992 -0.14163 0.5058 0.1868
## volume_m3_w_chemocline -0.99942 -0.03420 0.1624 0.6933
## volume_m3 -0.44002 -0.89799 0.1263 0.6683
## surface_area_m2 -0.35025 -0.93666 0.2598 0.4695
## distance_to_ocean_min_m 0.63373 -0.77355 0.2151 0.5155
## distance_to_ocean_mean_m 0.01326 -0.99991 0.1726 0.5984
## distance_to_ocean_median_m -0.00456 -0.99999 0.2084 0.5544
## tidal_lag_time_minutes -0.95579 -0.29405 0.3022 0.3916
## tidal_efficiency 0.35277 0.93571 0.0640 0.8382
## perimeter_fromSat -0.28273 -0.95920 0.3722 0.3477
## max_depth -0.46293 -0.88640 0.0126 0.9640
## logArea -0.26513 -0.96421 0.2144 0.5624
## Permutation: free
## Number of permutations: 1000jpress_efp <- p.adjust.envfit(jpress_ef)## Adjustment of significance by bonferroni methodjpress_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.35881 -0.93341 0.1965 1
## salinity_median -0.70036 0.71379 0.5991 1
## oxygen_median 0.98543 -0.17006 0.5185 1
## pH_median -0.98992 -0.14163 0.5058 1
## volume_m3_w_chemocline -0.99942 -0.03420 0.1624 1
## volume_m3 -0.44002 -0.89799 0.1263 1
## surface_area_m2 -0.35025 -0.93666 0.2598 1
## distance_to_ocean_min_m 0.63373 -0.77355 0.2151 1
## distance_to_ocean_mean_m 0.01326 -0.99991 0.1726 1
## distance_to_ocean_median_m -0.00456 -0.99999 0.2084 1
## tidal_lag_time_minutes -0.95579 -0.29405 0.3022 1
## tidal_efficiency 0.35277 0.93571 0.0640 1
## perimeter_fromSat -0.28273 -0.95920 0.3722 1
## max_depth -0.46293 -0.88640 0.0126 1
## logArea -0.26513 -0.96421 0.2144 1
## Permutation: free
## Number of permutations: 1000### Biogeographic
## Jaccard
# All sites for figure
jpresb_ef <- envfit(jpresb_NMDS, env[-c(8,20),c(47)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
jpresb_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.20933 -0.97785 0.3086 0.05794 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresb_efp <- p.adjust.envfit(jpresb_ef)## Adjustment of significance by bonferroni methodjpresb_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.20933 -0.97785 0.3086 0.05794 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
jpresba_ef <- envfit(jpresb_NMDS, env[-c(8,20),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
jpresba_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.68420 -0.72929 0.1623 0.44855
## volume_m3 0.64631 -0.76307 0.1557 0.41359
## surface_area_m2 0.43195 -0.90190 0.2799 0.20380
## distance_to_ocean_min_m -0.98169 -0.19050 0.6466 0.11788
## distance_to_ocean_mean_m -0.95198 -0.30617 0.5726 0.54246
## distance_to_ocean_median_m -0.94460 -0.32822 0.5670 0.53447
## tidal_lag_time_minutes -0.99902 -0.04415 0.5908 0.69630
## tidal_efficiency 0.99868 0.05130 0.6114 0.43257
## perimeter_fromSat 0.53005 -0.84797 0.2175 0.37862
## max_depth -0.22622 -0.97408 0.1435 0.75125
## logArea 0.20933 -0.97785 0.3086 0.06094 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresba_efp <- p.adjust.envfit(jpresba_ef)## Adjustment of significance by bonferroni methodjpresba_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.68420 -0.72929 0.1623 1.0000
## volume_m3 0.64631 -0.76307 0.1557 1.0000
## surface_area_m2 0.43195 -0.90190 0.2799 1.0000
## distance_to_ocean_min_m -0.98169 -0.19050 0.6466 1.0000
## distance_to_ocean_mean_m -0.95198 -0.30617 0.5726 1.0000
## distance_to_ocean_median_m -0.94460 -0.32822 0.5670 1.0000
## tidal_lag_time_minutes -0.99902 -0.04415 0.5908 1.0000
## tidal_efficiency 0.99868 0.05130 0.6114 1.0000
## perimeter_fromSat 0.53005 -0.84797 0.2175 1.0000
## max_depth -0.22622 -0.97408 0.1435 1.0000
## logArea 0.20933 -0.97785 0.3086 0.6703
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
jpresbms_ef <- envfit(jpresbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
jpresbms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.35180 0.93608 0.0099 0.9730
## volume_m3 -0.68236 -0.73102 0.1272 0.9051
## surface_area_m2 -0.93217 0.36201 0.0832 0.9331
## distance_to_ocean_min_m -0.94998 0.31230 0.5323 0.1548
## distance_to_ocean_mean_m -0.85542 0.51793 0.4286 0.4915
## distance_to_ocean_median_m -0.81025 0.58609 0.4367 0.4426
## tidal_lag_time_minutes -0.74306 0.66923 0.4175 0.7193
## tidal_efficiency 0.58875 -0.80832 0.5328 0.1908
## perimeter_fromSat -0.25657 0.96653 0.0917 0.7103
## max_depth -0.35004 -0.93674 0.1947 0.7313
## logArea -0.88134 0.47249 0.0201 0.9760
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresbms_efp <- p.adjust.envfit(jpresbms_ef)## Adjustment of significance by bonferroni methodjpresbms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.35180 0.93608 0.0099 1
## volume_m3 -0.68236 -0.73102 0.1272 1
## surface_area_m2 -0.93217 0.36201 0.0832 1
## distance_to_ocean_min_m -0.94998 0.31230 0.5323 1
## distance_to_ocean_mean_m -0.85542 0.51793 0.4286 1
## distance_to_ocean_median_m -0.81025 0.58609 0.4367 1
## tidal_lag_time_minutes -0.74306 0.66923 0.4175 1
## tidal_efficiency 0.58875 -0.80832 0.5328 1
## perimeter_fromSat -0.25657 0.96653 0.0917 1
## max_depth -0.35004 -0.93674 0.1947 1
## logArea -0.88134 0.47249 0.0201 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
jpresbom_ef <- envfit(jpresbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(25)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
jpresbom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] -0.84334 0.53738 0.4301 0.03297 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresbom_efp <- p.adjust.envfit(jpresbom_ef)## Adjustment of significance by bonferroni methodjpresbom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] -0.84334 0.53738 0.4301 0.03297 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
jpresbso_ef <- envfit(jpresbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jpresbso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94207 0.33541 0.2252 0.7423
## volume_m3 0.95259 0.30424 0.2135 0.7592
## surface_area_m2 0.78571 -0.61859 0.3178 0.6923
## distance_to_ocean_min_m -0.88999 -0.45597 0.6701 0.2068
## distance_to_ocean_mean_m -0.89206 -0.45192 0.6471 0.5405
## distance_to_ocean_median_m -0.87780 -0.47904 0.6385 0.5425
## tidal_lag_time_minutes -0.98368 -0.17995 0.7191 0.9421
## tidal_efficiency 0.97293 0.23110 0.7970 0.5834
## perimeter_fromSat 0.99077 -0.13554 0.2877 0.7303
## max_depth -0.96970 -0.24432 0.0579 0.9630
## logArea 0.54157 -0.84066 0.2156 0.5584
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresbso_efp <- p.adjust.envfit(jpresbso_ef)## Adjustment of significance by bonferroni methodjpresbso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94207 0.33541 0.2252 1
## volume_m3 0.95259 0.30424 0.2135 1
## surface_area_m2 0.78571 -0.61859 0.3178 1
## distance_to_ocean_min_m -0.88999 -0.45597 0.6701 1
## distance_to_ocean_mean_m -0.89206 -0.45192 0.6471 1
## distance_to_ocean_median_m -0.87780 -0.47904 0.6385 1
## tidal_lag_time_minutes -0.98368 -0.17995 0.7191 1
## tidal_efficiency 0.97293 0.23110 0.7970 1
## perimeter_fromSat 0.99077 -0.13554 0.2877 1
## max_depth -0.96970 -0.24432 0.0579 1
## logArea 0.54157 -0.84066 0.2156 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000## Dice-Sørensen
# All sites
spresb_ef <- envfit(spresb_NMDS, env[-c(8,20),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
spresb_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.67431 -0.73845 0.1637 0.4356
## surface_area_m2 0.42687 -0.90432 0.2824 0.1928
## distance_to_ocean_mean_m -0.95486 -0.29707 0.5732 0.5325
## tidal_efficiency 0.99977 0.02152 0.6115 0.4296
## max_depth -0.23404 -0.97223 0.1373 0.8202
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spresb_efp <- p.adjust.envfit(spresb_ef)## Adjustment of significance by bonferroni methodspresb_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.67431 -0.73845 0.1637 1.000
## surface_area_m2 0.42687 -0.90432 0.2824 0.964
## distance_to_ocean_mean_m -0.95486 -0.29707 0.5732 1.000
## tidal_efficiency 0.99977 0.02152 0.6115 1.000
## max_depth -0.23404 -0.97223 0.1373 1.000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
spresbms_ef <- envfit(spresbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
spresbms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.35213 0.93595 0.0099 0.9720
## surface_area_m2 -0.93250 0.36117 0.0832 0.9401
## distance_to_ocean_mean_m -0.85545 0.51789 0.4285 0.4725
## tidal_efficiency 0.58881 -0.80827 0.5327 0.1838
## max_depth -0.35006 -0.93673 0.1948 0.7293
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spresbms_efp <- p.adjust.envfit(spresbms_ef)## Adjustment of significance by bonferroni methodspresbms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.35213 0.93595 0.0099 1.0000
## surface_area_m2 -0.93250 0.36117 0.0832 1.0000
## distance_to_ocean_mean_m -0.85545 0.51789 0.4285 1.0000
## tidal_efficiency 0.58881 -0.80827 0.5327 0.9191
## max_depth -0.35006 -0.93673 0.1948 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
spresbom_ef <- envfit(spresbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
spresbom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94021 0.34059 0.1657 0.55744
## surface_area_m2 0.73084 -0.68255 0.2650 0.53846
## distance_to_ocean_mean_m -0.72897 0.68455 0.2299 0.36264
## tidal_efficiency 0.76011 -0.64979 0.2206 0.26573
## max_depth 0.66523 0.74664 0.5244 0.04595 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spresbom_efp <- p.adjust.envfit(spresbom_ef)## Adjustment of significance by bonferroni methodspresbom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94021 0.34059 0.1657 1.0000
## surface_area_m2 0.73084 -0.68255 0.2650 1.0000
## distance_to_ocean_mean_m -0.72897 0.68455 0.2299 1.0000
## tidal_efficiency 0.76011 -0.64979 0.2206 1.0000
## max_depth 0.66523 0.74664 0.5244 0.2298
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
spresbso_ef <- envfit(spresbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22,24,26,29,31)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
spresbso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94236 0.33460 0.2252 0.7333
## surface_area_m2 0.78553 -0.61882 0.3179 0.6573
## distance_to_ocean_mean_m -0.89200 -0.45203 0.6470 0.5025
## tidal_efficiency 0.97296 0.23098 0.7970 0.5794
## max_depth -0.96932 -0.24581 0.0579 0.9650
## Blocks: strata
## Permutation: free
## Number of permutations: 1000spresbso_efp <- p.adjust.envfit(spresbso_ef)## Adjustment of significance by bonferroni methodspresbso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94236 0.33460 0.2252 1
## surface_area_m2 0.78553 -0.61882 0.3179 1
## distance_to_ocean_mean_m -0.89200 -0.45203 0.6470 1
## tidal_efficiency 0.97296 0.23098 0.7970 1
## max_depth -0.96932 -0.24581 0.0579 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000### Traits
# All sites for figure
jprest_ef <- envfit(jpres_NMDS, FD_total_env[-20,c(57:58,64)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
jprest_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## L 0.13030 0.99147 0.3305 0.004995 **
## T -0.97546 -0.22018 0.7008 0.008991 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## EC1b -1.0503 -0.5276
## EC2g -1.5644 0.0244
## EC3n 0.2905 0.0559
##
## Goodness of fit:
## r2 Pr(>r)
## EC 0.4777 0.01099 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jprest_efp <- p.adjust.envfit(jprest_ef)## Adjustment of significance by bonferroni methodjprest_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## L 0.13030 0.99147 0.3305 0.01499 *
## T -0.97546 -0.22018 0.7008 0.02697 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## EC1b -1.0503 -0.5276
## EC2g -1.5644 0.0244
## EC3n 0.2905 0.0559
##
## Goodness of fit:
## r2 Pr(>r)
## EC 0.4777 0.03297 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification 9:10,18:19
jpresta_ef <- envfit(jpres_NMDS, FD_total_env[-20,c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
jpresta_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.13030 0.99147 0.3305 0.008991 **
## Troph -0.97546 -0.22018 0.7008 0.010989 *
## DepthMin -0.47471 0.88014 0.0104 0.896104
## DepthMax 0.48869 0.87246 0.3001 0.063936 .
## TempPrefMin 0.53929 -0.84212 0.3079 0.155844
## TempPrefMax -0.06393 -0.99795 0.0801 0.164835
## Weight 0.01274 0.99992 0.1121 0.136863
## CaudalFinLength -0.13218 0.99123 0.1757 0.015984 *
## DorsalSpinesMean 0.99278 -0.11999 0.6012 0.023976 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.2929 -0.2733
## BodyShapeI3f 0.2803 0.1104
## BodyShapeI4e -1.2708 -0.2089
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.1634 -0.3024
## OperculumPresentyes 0.2585 0.0672
## FeedingPathb 0.1050 0.0528
## FeedingPathp -1.0503 -0.5276
## RepGuild11b -1.0503 -0.5276
## RepGuild12g -1.5644 0.0244
## RepGuild13n 0.2905 0.0559
## RepGuild22eb -1.1059 -0.4106
## RepGuild23n -1.5644 0.0244
## RepGuild26s 0.2229 0.0190
## ParentalCare3p -1.1202 -0.1985
## ParentalCare4n 0.4201 0.0744
## WaterPref1s 0.3596 0.0225
## WaterPref3a -1.2225 -0.0764
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4385 0.045954 *
## DemersPelag 0.0000 1.000000
## OperculumPresent 0.3654 0.098901 .
## FeedingPath 0.1572 0.364635
## RepGuild1 0.4777 0.007992 **
## RepGuild2 0.3744 0.011988 *
## ParentalCare 0.5523 0.080919 .
## WaterPref 0.5022 0.056943 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jpresta_efp <- p.adjust.envfit(jpresta_ef)## Adjustment of significance by bonferroni methodjpresta_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.13030 0.99147 0.3305 0.1528
## Troph -0.97546 -0.22018 0.7008 0.1868
## DepthMin -0.47471 0.88014 0.0104 1.0000
## DepthMax 0.48869 0.87246 0.3001 1.0000
## TempPrefMin 0.53929 -0.84212 0.3079 1.0000
## TempPrefMax -0.06393 -0.99795 0.0801 1.0000
## Weight 0.01274 0.99992 0.1121 1.0000
## CaudalFinLength -0.13218 0.99123 0.1757 0.2717
## DorsalSpinesMean 0.99278 -0.11999 0.6012 0.4076
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.2929 -0.2733
## BodyShapeI3f 0.2803 0.1104
## BodyShapeI4e -1.2708 -0.2089
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.1634 -0.3024
## OperculumPresentyes 0.2585 0.0672
## FeedingPathb 0.1050 0.0528
## FeedingPathp -1.0503 -0.5276
## RepGuild11b -1.0503 -0.5276
## RepGuild12g -1.5644 0.0244
## RepGuild13n 0.2905 0.0559
## RepGuild22eb -1.1059 -0.4106
## RepGuild23n -1.5644 0.0244
## RepGuild26s 0.2229 0.0190
## ParentalCare3p -1.1202 -0.1985
## ParentalCare4n 0.4201 0.0744
## WaterPref1s 0.3596 0.0225
## WaterPref3a -1.2225 -0.0764
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4385 0.7812
## DemersPelag 0.0000 1.0000
## OperculumPresent 0.3654 1.0000
## FeedingPath 0.1572 1.0000
## RepGuild1 0.4777 0.1359
## RepGuild2 0.3744 0.2038
## ParentalCare 0.5523 1.0000
## WaterPref 0.5022 0.9680
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes 12:14,18
jprestms_ef <- envfit(jpresms_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(12:14,18)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## DepthMax 0.37917 0.92533 0.5650 0.009990 **
## TempPrefMin 0.13433 -0.99094 0.7048 0.000999 ***
## TempPrefMax -0.04422 -0.99902 0.4378 0.004995 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.8545 -0.3481
## RepGuild12g -1.1597 0.1376
## RepGuild13n 0.3357 0.0351
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.5641 0.002997 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jprestms_efp <- p.adjust.envfit(jprestms_ef)## Adjustment of significance by bonferroni methodjprestms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## DepthMax 0.37917 0.92533 0.5650 0.039960 *
## TempPrefMin 0.13433 -0.99094 0.7048 0.003996 **
## TempPrefMax -0.04422 -0.99902 0.4378 0.019980 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.8545 -0.3481
## RepGuild12g -1.1597 0.1376
## RepGuild13n 0.3357 0.0351
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.5641 0.01199 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes 9:10
jprestom_ef <- envfit(jpresom_NMDS, FD_total_env[c(3,6:11,13:16,18:19,23),c(9:10)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
jprestom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL -0.99998 -0.00677 0.4907 0.014985 *
## Troph -0.66850 -0.74371 0.6816 0.001998 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jprestom_efp <- p.adjust.envfit(jprestom_ef)## Adjustment of significance by bonferroni methodjprestom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL -0.99998 -0.00677 0.4907 0.029970 *
## Troph -0.66850 -0.74371 0.6816 0.003996 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites 9:10,18:19
jprestso_ef <- envfit(jpresso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(9:10,18:19)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.10155 0.99483 0.3868 0.001998 **
## Troph -0.79699 -0.60400 0.8666 0.009990 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.6890 -0.3566
## RepGuild12g -1.0431 0.0618
## RepGuild13n 0.3464 0.0589
## RepGuild22eb -0.7281 -0.2733
## RepGuild23n -1.0431 0.0618
## RepGuild26s 0.2559 0.0136
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.4562 0.006993 **
## RepGuild2 0.3465 0.004995 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000jprestso_efp <- p.adjust.envfit(jprestso_ef)## Adjustment of significance by bonferroni methodjprestso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.10155 0.99483 0.3868 0.007992 **
## Troph -0.79699 -0.60400 0.8666 0.039960 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.6890 -0.3566
## RepGuild12g -1.0431 0.0618
## RepGuild13n 0.3464 0.0589
## RepGuild22eb -0.7281 -0.2733
## RepGuild23n -1.0431 0.0618
## RepGuild26s 0.2559 0.0136
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.4562 0.02797 *
## RepGuild2 0.3465 0.01998 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000### Traits
# All sites
sprest_ef <- envfit(spres_NMDS, FD_total_env[-20,c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
sprest_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.13029 0.99148 0.3305 0.000999 ***
## Troph -0.97544 -0.22027 0.7008 0.009990 **
## DepthMin -0.47449 0.88026 0.0104 0.908092
## DepthMax 0.48869 0.87246 0.3001 0.065934 .
## TempPrefMin 0.53929 -0.84212 0.3079 0.149850
## TempPrefMax -0.06391 -0.99796 0.0801 0.177822
## Weight 0.01274 0.99992 0.1121 0.118881
## CaudalFinLength -0.13218 0.99123 0.1756 0.013986 *
## DorsalSpinesMean 0.99277 -0.12003 0.6012 0.018981 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.3234 -0.3018
## BodyShapeI3f 0.3095 0.1219
## BodyShapeI4e -1.4031 -0.2307
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.2845 -0.3339
## OperculumPresentyes 0.2854 0.0742
## FeedingPathb 0.1160 0.0583
## FeedingPathp -1.1597 -0.5825
## RepGuild11b -1.1597 -0.5825
## RepGuild12g -1.7273 0.0270
## RepGuild13n 0.3208 0.0617
## RepGuild22eb -1.2211 -0.4533
## RepGuild23n -1.7273 0.0270
## RepGuild26s 0.2461 0.0210
## ParentalCare3p -1.2368 -0.2192
## ParentalCare4n 0.4638 0.0822
## WaterPref1s 0.3970 0.0248
## WaterPref3a -1.3498 -0.0843
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4385 0.034965 *
## DemersPelag 0.0000 1.000000
## OperculumPresent 0.3654 0.098901 .
## FeedingPath 0.1572 0.369630
## RepGuild1 0.4777 0.003996 **
## RepGuild2 0.3744 0.006993 **
## ParentalCare 0.5523 0.070929 .
## WaterPref 0.5021 0.047952 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000sprest_efp <- p.adjust.envfit(sprest_ef)## Adjustment of significance by bonferroni methodsprest_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.13029 0.99148 0.3305 0.01698 *
## Troph -0.97544 -0.22027 0.7008 0.16983
## DepthMin -0.47449 0.88026 0.0104 1.00000
## DepthMax 0.48869 0.87246 0.3001 1.00000
## TempPrefMin 0.53929 -0.84212 0.3079 1.00000
## TempPrefMax -0.06391 -0.99796 0.0801 1.00000
## Weight 0.01274 0.99992 0.1121 1.00000
## CaudalFinLength -0.13218 0.99123 0.1756 0.23776
## DorsalSpinesMean 0.99277 -0.12003 0.6012 0.32268
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.3234 -0.3018
## BodyShapeI3f 0.3095 0.1219
## BodyShapeI4e -1.4031 -0.2307
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.2845 -0.3339
## OperculumPresentyes 0.2854 0.0742
## FeedingPathb 0.1160 0.0583
## FeedingPathp -1.1597 -0.5825
## RepGuild11b -1.1597 -0.5825
## RepGuild12g -1.7273 0.0270
## RepGuild13n 0.3208 0.0617
## RepGuild22eb -1.2211 -0.4533
## RepGuild23n -1.7273 0.0270
## RepGuild26s 0.2461 0.0210
## ParentalCare3p -1.2368 -0.2192
## ParentalCare4n 0.4638 0.0822
## WaterPref1s 0.3970 0.0248
## WaterPref3a -1.3498 -0.0843
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4385 0.59441
## DemersPelag 0.0000 1.00000
## OperculumPresent 0.3654 1.00000
## FeedingPath 0.1572 1.00000
## RepGuild1 0.4777 0.06793 .
## RepGuild2 0.3744 0.11888
## ParentalCare 0.5523 1.00000
## WaterPref 0.5021 0.81518
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
sprestms_ef <- envfit(spresms_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
sprestms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.23348 0.97236 0.4657 0.023976 *
## Troph -0.99931 0.03701 0.5740 0.079920 .
## DepthMin -0.11931 0.99286 0.1167 0.302697
## DepthMax 0.38593 0.92253 0.5532 0.016983 *
## TempPrefMin 0.13455 -0.99091 0.7083 0.000999 ***
## TempPrefMax -0.04406 -0.99903 0.4488 0.008991 **
## Weight 0.13928 0.99025 0.3111 0.061938 .
## CaudalFinLength 0.03257 0.99947 0.2952 0.051948 .
## DorsalSpinesMean 0.96547 -0.26052 0.6133 0.028971 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -1.0217 -0.3206
## BodyShapeI3f 0.5233 0.0133
## BodyShapeI4e -1.1836 0.0436
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.0995 -0.1165
## OperculumPresentyes 0.3665 0.0388
## FeedingPathb 0.1480 0.0602
## FeedingPathp -1.0360 -0.4216
## RepGuild11b -1.0360 -0.4216
## RepGuild12g -1.4204 0.1607
## RepGuild13n 0.4094 0.0435
## RepGuild22eb -1.0217 -0.3206
## RepGuild23n -1.4204 0.1607
## RepGuild26s 0.2971 -0.0001
## ParentalCare3p -1.0016 0.0352
## ParentalCare4n 0.6010 -0.0211
## WaterPref1s 0.4802 -0.0074
## WaterPref3a -1.0564 0.0163
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.6408 0.018981 *
## DemersPelag 0.0000 1.000000
## OperculumPresent 0.4275 0.072927 .
## FeedingPath 0.1875 0.278721
## RepGuild1 0.5655 0.005994 **
## RepGuild2 0.4184 0.012987 *
## ParentalCare 0.6323 0.075924 .
## WaterPref 0.5323 0.078921 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000sprestms_efp <- p.adjust.envfit(sprestms_ef)## Adjustment of significance by bonferroni methodsprestms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.23348 0.97236 0.4657 0.40759
## Troph -0.99931 0.03701 0.5740 1.00000
## DepthMin -0.11931 0.99286 0.1167 1.00000
## DepthMax 0.38593 0.92253 0.5532 0.28871
## TempPrefMin 0.13455 -0.99091 0.7083 0.01698 *
## TempPrefMax -0.04406 -0.99903 0.4488 0.15285
## Weight 0.13928 0.99025 0.3111 1.00000
## CaudalFinLength 0.03257 0.99947 0.2952 0.88312
## DorsalSpinesMean 0.96547 -0.26052 0.6133 0.49251
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -1.0217 -0.3206
## BodyShapeI3f 0.5233 0.0133
## BodyShapeI4e -1.1836 0.0436
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.0995 -0.1165
## OperculumPresentyes 0.3665 0.0388
## FeedingPathb 0.1480 0.0602
## FeedingPathp -1.0360 -0.4216
## RepGuild11b -1.0360 -0.4216
## RepGuild12g -1.4204 0.1607
## RepGuild13n 0.4094 0.0435
## RepGuild22eb -1.0217 -0.3206
## RepGuild23n -1.4204 0.1607
## RepGuild26s 0.2971 -0.0001
## ParentalCare3p -1.0016 0.0352
## ParentalCare4n 0.6010 -0.0211
## WaterPref1s 0.4802 -0.0074
## WaterPref3a -1.0564 0.0163
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.6408 0.3227
## DemersPelag 0.0000 1.0000
## OperculumPresent 0.4275 1.0000
## FeedingPath 0.1875 1.0000
## RepGuild1 0.5655 0.1019
## RepGuild2 0.4184 0.2208
## ParentalCare 0.6323 1.0000
## WaterPref 0.5323 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
sprestom_ef <- envfit(spresom_NMDS, FD_total_env[c(3,6:11,13:16,18:19,23),c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
sprestom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL -0.99998 -0.00678 0.4907 0.009990 **
## Troph -0.66850 -0.74371 0.6816 0.001998 **
## DepthMin 0.29445 0.95567 0.1726 0.216783
## DepthMax -0.10243 -0.99474 0.0077 0.973027
## TempPrefMin 0.63819 -0.76988 0.2869 0.111888
## TempPrefMax 0.34837 -0.93736 0.0734 0.529471
## Weight -0.99715 0.07542 0.0534 0.683317
## CaudalFinLength -0.99876 0.04976 0.3784 0.040959 *
## DorsalSpinesMean 0.78598 -0.61825 0.3655 0.072927 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.5434 0.0555
## BodyShapeI3f -0.0906 -0.0092
## DemersPelag1r 0.0000 0.0000
## OperculumPresentyes 0.0000 0.0000
## FeedingPathb 0.0000 0.0000
## RepGuild13n 0.0000 0.0000
## RepGuild26s 0.0000 0.0000
## ParentalCare4n 0.0000 0.0000
## WaterPref1s 0.0000 0.0000
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.117 0.6404
## DemersPelag 0.000 1.0000
## OperculumPresent 0.000 1.0000
## FeedingPath 0.000 1.0000
## RepGuild1 0.000 1.0000
## RepGuild2 0.000 1.0000
## ParentalCare 0.000 1.0000
## WaterPref 0.000 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000sprestom_efp <- p.adjust.envfit(sprestom_ef)## Adjustment of significance by bonferroni methodsprestom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL -0.99998 -0.00678 0.4907 0.16983
## Troph -0.66850 -0.74371 0.6816 0.03397 *
## DepthMin 0.29445 0.95567 0.1726 1.00000
## DepthMax -0.10243 -0.99474 0.0077 1.00000
## TempPrefMin 0.63819 -0.76988 0.2869 1.00000
## TempPrefMax 0.34837 -0.93736 0.0734 1.00000
## Weight -0.99715 0.07542 0.0534 1.00000
## CaudalFinLength -0.99876 0.04976 0.3784 0.69630
## DorsalSpinesMean 0.78598 -0.61825 0.3655 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.5434 0.0555
## BodyShapeI3f -0.0906 -0.0092
## DemersPelag1r 0.0000 0.0000
## OperculumPresentyes 0.0000 0.0000
## FeedingPathb 0.0000 0.0000
## RepGuild13n 0.0000 0.0000
## RepGuild26s 0.0000 0.0000
## ParentalCare4n 0.0000 0.0000
## WaterPref1s 0.0000 0.0000
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.117 1
## DemersPelag 0.000 1
## OperculumPresent 0.000 1
## FeedingPath 0.000 1
## RepGuild1 0.000 1
## RepGuild2 0.000 1
## ParentalCare 0.000 1
## WaterPref 0.000 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
sprestso_ef <- envfit(spresso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
sprestso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.10154 0.99483 0.3868 0.002997 **
## Troph -0.79699 -0.60399 0.8666 0.011988 *
## DepthMin -0.20036 0.97972 0.0314 0.689311
## DepthMax 0.39583 0.91832 0.2841 0.040959 *
## TempPrefMin 0.39055 -0.92058 0.3671 0.128871
## TempPrefMax -0.08495 -0.99639 0.1297 0.144855
## Weight -0.05008 0.99875 0.2028 0.116883
## CaudalFinLength -0.11161 0.99375 0.2116 0.058941 .
## DorsalSpinesMean 0.99753 0.07024 0.6372 0.048951 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.5873 -0.2448
## BodyShapeI3f 0.4117 0.2046
## BodyShapeI4e -1.1609 -0.1744
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.0574 -0.3140
## OperculumPresentyes 0.4229 0.1256
## FeedingPathb 0.1626 0.0841
## FeedingPathp -0.9753 -0.5047
## RepGuild11b -0.9753 -0.5047
## RepGuild12g -1.4767 0.0875
## RepGuild13n 0.4904 0.0834
## RepGuild22eb -1.0307 -0.3868
## RepGuild23n -1.4767 0.0875
## RepGuild26s 0.3622 0.0193
## ParentalCare3p -1.0120 -0.1455
## ParentalCare4n 0.7590 0.1091
## WaterPref1s 0.6224 0.0027
## WaterPref3a -1.1204 -0.0049
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4042 0.060939 .
## DemersPelag 0.0000 1.000000
## OperculumPresent 0.3356 0.101898
## FeedingPath 0.1386 0.350649
## RepGuild1 0.4562 0.006993 **
## RepGuild2 0.3465 0.005994 **
## ParentalCare 0.5406 0.116883
## WaterPref 0.4808 0.064935 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000sprestso_efp <- p.adjust.envfit(sprestso_ef)## Adjustment of significance by bonferroni methodsprestso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.10154 0.99483 0.3868 0.05095 .
## Troph -0.79699 -0.60399 0.8666 0.20380
## DepthMin -0.20036 0.97972 0.0314 1.00000
## DepthMax 0.39583 0.91832 0.2841 0.69630
## TempPrefMin 0.39055 -0.92058 0.3671 1.00000
## TempPrefMax -0.08495 -0.99639 0.1297 1.00000
## Weight -0.05008 0.99875 0.2028 1.00000
## CaudalFinLength -0.11161 0.99375 0.2116 1.00000
## DorsalSpinesMean 0.99753 0.07024 0.6372 0.83217
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.5873 -0.2448
## BodyShapeI3f 0.4117 0.2046
## BodyShapeI4e -1.1609 -0.1744
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.0574 -0.3140
## OperculumPresentyes 0.4229 0.1256
## FeedingPathb 0.1626 0.0841
## FeedingPathp -0.9753 -0.5047
## RepGuild11b -0.9753 -0.5047
## RepGuild12g -1.4767 0.0875
## RepGuild13n 0.4904 0.0834
## RepGuild22eb -1.0307 -0.3868
## RepGuild23n -1.4767 0.0875
## RepGuild26s 0.3622 0.0193
## ParentalCare3p -1.0120 -0.1455
## ParentalCare4n 0.7590 0.1091
## WaterPref1s 0.6224 0.0027
## WaterPref3a -1.1204 -0.0049
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4042 1.0000
## DemersPelag 0.0000 1.0000
## OperculumPresent 0.3356 1.0000
## FeedingPath 0.1386 1.0000
## RepGuild1 0.4562 0.1189
## RepGuild2 0.3465 0.1019
## ParentalCare 0.5406 1.0000
## WaterPref 0.4808 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000Incidence mantel tests
We used mantel tests to determine significance between the incidence and environmental distance matrices.
### Environmental
## Jaccard
# All sites
enve_dist_s <- dist(scaled_env[-c(9,16,18,20),c(2)], method = "euclidean")
jpresea_mant_s <- mantel(jprese_dist, enve_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jpresea_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jprese_dist, ydis = enve_dist_s, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6697
## Significance: 0.006
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.570 0.605 0.628 0.652
## Blocks: strata
## Permutation: free
## Number of permutations: 999enve_dist_p <- dist(scaled_env[-c(9,16,18,20),c(4)], method = "euclidean")
jpresea_mant_p <- mantel(jprese_dist, enve_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
jpresea_mant_p##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jprese_dist, ydis = enve_dist_p, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.7163
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.533 0.572 0.606 0.651
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jpresea_mant_pv <- rbind(jpresea_mant_s$signif, jpresea_mant_p$signif)
jpresea_mant_pv <- jpresea_mant_pv[,1]
jpresea_mant_pv <- p.adjust(jpresea_mant_pv, method = "bonferroni")
jpresea_mant_pv## [1] 0.012 0.004# Mixed and stratified lakes
envems_dist_s <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2)], method = "euclidean")
jpresems_mant_s <- mantel(jpresems_dist, envems_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jpresems_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresems_dist, ydis = envems_dist_s, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6676
## Significance: 0.006
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.561 0.606 0.633 0.653
## Blocks: strata
## Permutation: free
## Number of permutations: 999envems_dist_p <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(4)], method = "euclidean")
jpresems_mant_p <- mantel(jpresems_dist, envems_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jpresems_mant_p##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresems_dist, ydis = envems_dist_p, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6357
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.429 0.473 0.496 0.534
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jpresems_mant_pv <- rbind(jpresems_mant_s$signif, jpresems_mant_p$signif)
jpresems_mant_pv <- jpresems_mant_pv[,1]
jpresems_mant_pv <- p.adjust(jpresems_mant_pv, method = "bonferroni")
jpresems_mant_pv## [1] 0.012 0.004# Ocean sites and mixed lakes
enveom_dist_p <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(4)], method = "euclidean")
jpreseom_mant_p <- mantel(jpreseom_dist, enveom_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
jpreseom_mant_p##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpreseom_dist, ydis = enveom_dist_p, method = "spearman", permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15, 19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5793
## Significance: 0.012
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.317 0.386 0.456 0.591
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
enveso_dist_s <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2)], method = "euclidean")
jpreseso_mant_s <- mantel(jpreseso_dist, enveso_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
jpreseso_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpreseso_dist, ydis = enveso_dist_s, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17, 19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5528
## Significance: 0.02
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.458 0.511 0.546 0.569
## Blocks: strata
## Permutation: free
## Number of permutations: 999## Dice-Sørensen
# All sites
enve_dist <- dist(scaled_env[-c(9,16,18,20),c(6,8,10)], method = "euclidean")
sprese_mant <- mantel(sprese_dist, enve_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
sprese_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = sprese_dist, ydis = enve_dist, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3836
## Significance: 0.16
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.414 0.449 0.480 0.499
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envems_dist <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10)], method = "euclidean")
spresems_mant <- mantel(spresems_dist, envems_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
spresems_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresems_dist, ydis = envems_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3463
## Significance: 0.212
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.401 0.454 0.499 0.533
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
enveom_dist <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(6,8,10)], method = "euclidean")
spreseom_mant <- mantel(spreseom_dist, enveom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
spreseom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spreseom_dist, ydis = enveom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15, 19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2566
## Significance: 0.086
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.241 0.281 0.345 0.435
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
enveso_dist <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(6,8,10)], method = "euclidean")
spreseso_mant <- mantel(spreseso_dist, enveso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
spreseso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spreseso_dist, ydis = enveso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17, 19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4922
## Significance: 0.165
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.509 0.535 0.555 0.572
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes
enves_dist <- dist(scaled_env[c(1:2,4,5,12,17,21:22),c(2)], method = "euclidean")
jpreses_mant <- mantel(jpress_dist, enves_dist, method = "spearman", permutations = 999, na.rm = TRUE)
jpreses_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpress_dist, ydis = enves_dist, method = "spearman", permutations = 999, na.rm = TRUE)
##
## Mantel statistic r: 0.4001
## Significance: 0.016
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.238 0.304 0.359 0.409
## Permutation: free
## Number of permutations: 999### Biogeographic
## Jaccard
# All sites
envb_dist <- dist(scaled_env[-c(8,20),c(5:15)], method = "euclidean")
jpresba_mant <- mantel(jpresb_dist, envb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
jpresba_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresb_dist, ydis = envb_dist, method = "spearman", permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3881
## Significance: 0.241
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.426 0.447 0.465 0.489
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:15)], method = "euclidean")
jpresbms_mant <- mantel(jpresbms_dist, envbms_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
jpresbms_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresbms_dist, ydis = envbms_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2892
## Significance: 0.338
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.404 0.467 0.510 0.550
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(5:15)], method = "euclidean")
jpresbom_mant <- mantel(jpresbom_dist, envbom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
jpresbom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresbom_dist, ydis = envbom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:7, 9:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2261
## Significance: 0.227
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.298 0.338 0.383 0.426
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:15)], method = "euclidean")
jpresbso_mant <- mantel(jpresbso_dist, envbso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jpresbso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresbso_dist, ydis = envbso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5571
## Significance: 0.383
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.597 0.611 0.624 0.638
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jpresb_mant_p <- rbind(jpresbms_mant$signif, jpresbom_mant$signif, jpresbso_mant$signif)
jpresb_mant_p <- jpresb_mant_p[,1]
jpresb_mant_p <- p.adjust(jpresb_mant_p, method = "bonferroni")
jpresb_mant_p## [1] 1.000 0.681 1.000## Dice-Sørensen
# All sites
spresb_mant <- mantel(spresb_dist, envb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
spresb_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresb_dist, ydis = envb_dist, method = "spearman", permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3881
## Significance: 0.282
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.439 0.467 0.494 0.516
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
spresbms_mant <- mantel(spresbms_dist, envbms_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
spresbms_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresbms_dist, ydis = envbms_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2892
## Significance: 0.349
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.401 0.451 0.481 0.515
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
spresbom_mant <- mantel(spresbom_dist, envbom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
spresbom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresbom_dist, ydis = envbom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:7, 9:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2261
## Significance: 0.226
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.294 0.339 0.374 0.413
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
spresbso_mant <- mantel(spresbso_dist, envbso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
spresbso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresbso_dist, ydis = envbso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5571
## Significance: 0.403
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.600 0.618 0.629 0.640
## Blocks: strata
## Permutation: free
## Number of permutations: 999### Traits
# All sites 1,2,4,12:13
FDpa_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(1)]))
jpresta_mant_s <- mantel(jpres_dist, FDpa_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_s, method = "spearman", permutations = 999, strata = env[-20, 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5553
## Significance: 0.001
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.368 0.409 0.440 0.472
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpa_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(2)]))
jpresta_mant_l <- mantel(jpres_dist, FDpa_dist_l, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_l##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_l, method = "spearman", permutations = 999, strata = env[-20, 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3662
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.252 0.278 0.301 0.320
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpa_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(4)]))
jpresta_mant_dmin <- mantel(jpres_dist, FDpa_dist_dmin, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_dmin##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_dmin, method = "spearman", permutations = 999, strata = env[-20, 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6215
## Significance: 0.006
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.549 0.566 0.580 0.602
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpa_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(12:13)]))
jpresta_mant_ec <- mantel(jpres_dist, FDpa_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
jpresta_mant_ec##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpres_dist, ydis = FDpa_dist_ec, method = "spearman", permutations = 999, strata = env[-20, 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5011
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.387 0.412 0.437 0.471
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jpresta_mant_pv <- rbind(jpresta_mant_s$signif, jpresta_mant_l$signif, jpresta_mant_dmin$signif, jpresta_mant_ec$signif)
jpresta_mant_pv <- jpresta_mant_pv[,1]
jpresta_mant_pv <- p.adjust(jpresta_mant_pv, method = "bonferroni")
jpresta_mant_pv## [1] 0.004 0.008 0.024 0.008# Mixed and stratified lakes 1,4,12:13
FDpams_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1)]))
jprestms_mant_s <- mantel(jpresms_dist, FDpams_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresms_dist, ydis = FDpams_dist_s, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4835
## Significance: 0.005
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.321 0.371 0.413 0.451
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpams_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(4)]))
jprestms_mant_dmin <- mantel(jpresms_dist, FDpams_dist_dmin, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_mant_dmin##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresms_dist, ydis = FDpams_dist_dmin, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5526
## Significance: 0.009
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.472 0.501 0.526 0.547
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpams_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(12:13)]))
jprestms_mant_ec <- mantel(jpresms_dist, FDpams_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
jprestms_mant_ec##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresms_dist, ydis = FDpams_dist_ec, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5043
## Significance: 0.005
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.359 0.395 0.438 0.451
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jprestms_mant_pv <- rbind(jprestms_mant_s$signif, jprestms_mant_dmin$signif, jprestms_mant_ec$signif)
jprestms_mant_pv <- jprestms_mant_pv[,1]
jprestms_mant_pv <- p.adjust(jprestms_mant_pv, method = "bonferroni")
jprestms_mant_pv## [1] 0.015 0.027 0.015# Ocean sites and mixed lakes 1,2
FDpaom_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(1)]))
jprestom_mant_s <- mantel(jpresom_dist, FDpaom_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
jprestom_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresom_dist, ydis = FDpaom_dist_s, method = "spearman", permutations = 999, strata = env[c(3, 6:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4451
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.161 0.225 0.269 0.322
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpaom_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(2)]))
jprestom_mant_l <- mantel(jpresom_dist, FDpaom_dist_l, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
jprestom_mant_l##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresom_dist, ydis = FDpaom_dist_l, method = "spearman", permutations = 999, strata = env[c(3, 6:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2519
## Significance: 0.02
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.137 0.188 0.232 0.291
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jprestom_mant_pv <- rbind(jprestom_mant_s$signif, jprestom_mant_l$signif)
jprestom_mant_pv <- jprestom_mant_pv[,1]
jprestom_mant_pv <- p.adjust(jprestom_mant_pv, method = "bonferroni")
jprestom_mant_pv## [1] 0.004 0.040# Stratified lakes and ocean sites 2,4,12:13
FDpaso_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(2)]))
jprestso_mant_l <- mantel(jpresso_dist, FDpaso_dist_l, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_mant_l##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresso_dist, ydis = FDpaso_dist_l, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2324
## Significance: 0.003
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.148 0.172 0.187 0.206
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpaso_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(4)]))
jprestso_mant_dmin <- mantel(jpresso_dist, FDpaso_dist_dmin, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_mant_dmin##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresso_dist, ydis = FDpaso_dist_dmin, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5981
## Significance: 0.001
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.517 0.536 0.549 0.567
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpaso_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(12:13)]))
jprestso_mant_ec <- mantel(jpresso_dist, FDpaso_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
jprestso_mant_ec##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = jpresso_dist, ydis = FDpaso_dist_ec, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2447
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.149 0.174 0.191 0.214
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
jprestso_mant_pv <- rbind(jprestso_mant_l$signif, jprestso_mant_dmin$signif, jprestso_mant_ec$signif)
jprestso_mant_pv <- jprestso_mant_pv[,1]
jprestso_mant_pv <- p.adjust(jprestso_mant_pv, method = "bonferroni")
jprestso_mant_pv## [1] 0.009 0.003 0.006## Dice-Sørensen
# All sites
FDpa_dist <- gowdis(as.data.frame(scaled_FD_total_env[-20,c(1:17)]))
spresta_mant <- mantel(spres_dist, FDpa_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-20,19])
spresta_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spres_dist, ydis = FDpa_dist, method = "spearman", permutations = 999, strata = env[-20, 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6331
## Significance: 0.001
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.513 0.536 0.560 0.578
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
FDpams_dist <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1:17)]))
sprestms_mant <- mantel(spresms_dist, FDpams_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
sprestms_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresms_dist, ydis = FDpams_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6558
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.461 0.498 0.543 0.578
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
FDpaom_dist <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(1:7)]))
sprestom_mant <- mantel(spresom_dist, FDpaom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
sprestom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresom_dist, ydis = FDpaom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3433
## Significance: 0.016
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.173 0.236 0.297 0.352
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
FDpaso_dist <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(1:17)]))
sprestso_mant <- mantel(spresso_dist, FDpaso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
sprestso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = spresso_dist, ydis = FDpaso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3897
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.269 0.310 0.342 0.365
## Blocks: strata
## Permutation: free
## Number of permutations: 999Plot Jaccard incidence NMDS and envfit results
Includes a plot of correlated environmental variables and a plot of correlated traits
jpres_NMDS_data.scores <- as.data.frame(scores(jpres_NMDS))
jpres_NMDS_data.scores$Stratification <- env[-20,19]
jpres_NMDS_data.scores$Lakes <- env[-20,1]
jpres_NMDS_data.scores$Stratification <- factor(jpres_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))
jprese_ef_coord_cont <- as.data.frame(scores(jprese_ef, "vectors")) * ordiArrowMul(jprese_ef)
jprese_new_row_names <- c("pH")
# Assign the new row names to the data frame
jprese_ef_coord_cont <- data.frame(row.names = jprese_new_row_names, jprese_ef_coord_cont)
# jpresb_ef_coord_cont <- as.data.frame(scores(jpresb_ef, "vectors")) * ordiArrowMul(jpresb_ef)
# jpresb_new_row_names <- c("LA")
# # Assign the new row names to the data frame
# jpresb_ef_coord_cont <- data.frame(row.names = jpresb_new_row_names, jpresb_ef_coord_cont)
jpres_ef_plot <- ggplot(data = jpres_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification), level = 0.50) +
geom_point(data = jpres_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) +
geom_text_repel(data = jpres_NMDS_data.scores, label = jpres_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = jprese_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD661D") +
geom_text(data = jprese_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#CD661D", label = row.names(jprese_ef_coord_cont), size = 7) +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = jpresb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#698B22") +
# geom_text(data = jpresb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
# color = "#698B22", label = row.names(jpresb_ef_coord_cont), size = 6) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = 1, y = 0.73, size = 6,
# label = paste("Stress: ", round(jpres_NMDS$stress, digits = 2))) +
labs(color = "Stratification")
jpres_ef_plot <- jpres_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
jpres_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/jpres_ef_plot.png", jpres_ef_plot, width = 8, height = 4, units = "in")
jprest_ef_coord_cont <- as.data.frame(scores(jprest_ef, "vectors")) * ordiArrowMul(jprest_ef)
jprest_ef_coord_cat = as.data.frame(scores(jprest_ef, "factors")) * ordiArrowMul(jprest_ef)
jprest_ef_plot <- ggplot(data = jpres_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
geom_point(data = jpres_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) +
geom_text_repel(data = jpres_NMDS_data.scores, label = jpres_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = jprest_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD3333") +
geom_text(data = jprest_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#CD3333", label = row.names(jprest_ef_coord_cont), size = 7) +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = jprest_ef_coord_cat, linewidth =1, alpha = 0.2, color = "#8B6508") +
geom_text(data = jprest_ef_coord_cat, aes(x = NMDS1, y = NMDS2),
color = "#8B6508", label = row.names(jprest_ef_coord_cat), size = 7, check_overlap = T) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = 1.05, y = 0.73, size = 6,
# label = paste("Stress: ", round(jpres_NMDS$stress, digits = 2))) +
labs(color = "Stratification", tag = "B")
jprest_ef_plot <- jprest_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
jprest_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/jprest_ef_plot.png", jprest_ef_plot, width = 8.25, height = 4.13, units = "in")Plot Dice-Sørensen incidence NMDS and envfit results
spres_NMDS_data.scores <- as.data.frame(scores(spres_NMDS))
spres_NMDS_data.scores$Stratification <- env[-c(20),19]
spres_NMDS_data.scores$Stratification <- factor(spres_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))
sprese_ef_coord_cont <- as.data.frame(scores(sprese_ef, "vectors")) * ordiArrowMul(sprese_ef)
spresb_ef_coord_cont <- as.data.frame(scores(spresb_ef, "vectors")) * ordiArrowMul(spresb_ef)
sprest_ef_coord_cont <- as.data.frame(scores(sprest_ef, "vectors")) * ordiArrowMul(sprest_ef)
sprest_ef_coord_cat = as.data.frame(scores(sprest_ef, "factors")) * ordiArrowMul(sprest_ef)
spres_ef_plot <- ggplot(data = spres_NMDS_data.scores, aes(x = NMDS1, y = NMDS2)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
geom_point(data = spres_NMDS_data.scores, aes(color = Stratification), size = 7, alpha = 1) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = sprese_ef_coord_cont, size =1, alpha = 0.5, color = "#8968CD") +
geom_text(data = sprese_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#8968CD", label = row.names(sprese_ef_coord_cont)) +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = spresb_ef_coord_cont, size =1, alpha = 0.5, color = "#CD5555") +
geom_text(data = spresb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#CD5555", label = row.names(spresb_ef_coord_cont)) +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = sprest_ef_coord_cont, size =1, alpha = 0.5, color = "darkolivegreen3") +
geom_text(data = sprest_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "darkolivegreen3", label = row.names(sprest_ef_coord_cont)) +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = sprest_ef_coord_cat, size =1, alpha = 0.5, color = "#EEC900") +
geom_text(data = sprest_ef_coord_cat, aes(x = NMDS1, y = NMDS2),
color = "#EEC900", label = row.names(sprest_ef_coord_cat)) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
annotate(geom = "label", x = -1.5, y = 0.82639346, size = 4,
label = paste("Stress: ", round(spres_NMDS$stress, digits = 2))) +
labs(color = "Stratification")
spres_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/spres_ef_plot.png", spres_ef_plot, width = 8, height = 4, units = "in")Trait dissimilarity distances
We use the community weighted means calculated from the FD package. We use traits that were found to be significantly correlated with stratification and environmental variables.
### Regular 6,8,10,18,20,21,22
# All sites 6,8,10,18,20,21,22
# Non-siginficant dipersion but significant difference between stratification types: 10,20,22
# BodyShapeI, OperculumPresent, Troph, RepGuild1, ParentalCare, WaterPref, DorsalSpinesMean
fd_dist <- gowdis(FD_total_env[-20,c(6,8,10,18,20,21,22)])
# Mixed and stratified lakes
fdms_dist <- gowdis(FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10,18,20,21,22)])
# Ocean sites and mixed lakes
fdom_dist <- gowdis(FD_total_env[c(3,6:11,13:16,18:19,23),c(6,8,10,18,20,21,22)])
# Stratified lakes and ocean sites
fdso_dist <- gowdis(FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(6,8,10,18,20,21,22)])
# Stratified lakes
fds_dist <- gowdis(FD_total_env[c(1:2,4,5,12,17,21:22),c(6,8,10,18,20,21,22)])
### Environmental -c(9,16,18,20)
# All sites
fde_dist <- gowdis(FD_total_env[-c(9,16,18,20),c(6,8,10,18,20,21,22)])
# Mixed and stratified lakes
fdems_dist <- gowdis(FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10,18,20,21,22)])
# Ocean sites and mixed lakes
fdeom_dist <- gowdis(FD_total_env[c(3,6:8,10:11,13:15,19,23),c(6,8,10,18,20,21,22)])
# Stratified lakes and ocean sites
fdeso_dist <- gowdis(FD_total_env[c(1:2,4,5,7,11:12,17,19,21:22),c(6,8,10,18,20,21,22)])
### Biogeographic -c(8,20)
# All sites
fdb_dist <- gowdis(FD_total_env[-c(8,20),-c(6,8,10,18,20,21,22)])
# Mixed and stratified lakes
fdbms_dist <- gowdis(FD_total_env[c(1:6,10,12:15,17,21:23),c(6,8,10,18,20,21,22)])
# Ocean sites and mixed lakes
fdbom_dist <- gowdis(FD_total_env[c(3,6:7,9:11,13:16,18:19,23),c(6,8,10,18,20,21,22)])
# Stratified lakes and ocean sites
fdbso_dist <- gowdis(FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(6,8,10,18,20,21,22)])Trait NMDS
To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.
### Regular
# All sites
fd_NMDS <- metaMDS(fd_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.03172161
## Run 1 stress 0.03676001
## Run 2 stress 0.03644827
## Run 3 stress 0.03752263
## Run 4 stress 0.03644765
## Run 5 stress 0.03866126
## Run 6 stress 0.03172162
## ... Procrustes: rmse 2.907315e-05 max resid 9.31783e-05
## ... Similar to previous best
## Run 7 stress 0.03676002
## Run 8 stress 0.03644823
## Run 9 stress 0.03751878
## Run 10 stress 0.03393548
## Run 11 stress 0.03675763
## Run 12 stress 0.03393548
## Run 13 stress 0.03393548
## Run 14 stress 0.03676003
## Run 15 stress 0.03393551
## Run 16 stress 0.2155578
## Run 17 stress 0.03577049
## Run 18 stress 0.03172159
## ... New best solution
## ... Procrustes: rmse 6.090777e-05 max resid 0.0002162438
## ... Similar to previous best
## Run 19 stress 0.03172158
## ... New best solution
## ... Procrustes: rmse 3.422988e-05 max resid 0.0001070888
## ... Similar to previous best
## Run 20 stress 0.03172162
## ... Procrustes: rmse 4.651624e-05 max resid 0.0001415165
## ... Similar to previous best
## Run 21 stress 0.03752409
## Run 22 stress 0.03866129
## Run 23 stress 0.03751884
## Run 24 stress 0.03675802
## Run 25 stress 0.03577054
## Run 26 stress 0.03172159
## ... Procrustes: rmse 1.254479e-05 max resid 3.869204e-05
## ... Similar to previous best
## Run 27 stress 0.03577048
## Run 28 stress 0.03866128
## Run 29 stress 0.03393548
## Run 30 stress 0.03403879
## Run 31 stress 0.03577092
## Run 32 stress 0.03577096
## Run 33 stress 0.03577098
## Run 34 stress 0.03393553
## Run 35 stress 0.03752416
## Run 36 stress 0.03403879
## Run 37 stress 0.03393549
## Run 38 stress 0.03866135
## Run 39 stress 0.03172159
## ... Procrustes: rmse 1.884991e-05 max resid 6.392282e-05
## ... Similar to previous best
## Run 40 stress 0.04599199
## Run 41 stress 0.03172158
## ... Procrustes: rmse 3.074257e-05 max resid 8.362105e-05
## ... Similar to previous best
## Run 42 stress 0.03172162
## ... Procrustes: rmse 4.186809e-05 max resid 0.0001274977
## ... Similar to previous best
## Run 43 stress 0.03675772
## Run 44 stress 0.2156908
## Run 45 stress 0.03172158
## ... Procrustes: rmse 3.329818e-06 max resid 1.03662e-05
## ... Similar to previous best
## Run 46 stress 0.03644817
## Run 47 stress 0.03393548
## Run 48 stress 0.03172159
## ... Procrustes: rmse 6.043402e-06 max resid 1.57008e-05
## ... Similar to previous best
## Run 49 stress 0.036758
## Run 50 stress 0.03172162
## ... Procrustes: rmse 4.249985e-05 max resid 0.0001294009
## ... Similar to previous best
## Run 51 stress 0.03393548
## Run 52 stress 0.03866132
## Run 53 stress 0.03172161
## ... Procrustes: rmse 1.96119e-05 max resid 6.130382e-05
## ... Similar to previous best
## Run 54 stress 0.03393549
## Run 55 stress 0.3807978
## Run 56 stress 0.03172159
## ... Procrustes: rmse 1.390791e-05 max resid 4.287653e-05
## ... Similar to previous best
## Run 57 stress 0.03644816
## Run 58 stress 0.03172162
## ... Procrustes: rmse 4.248583e-05 max resid 0.0001279729
## ... Similar to previous best
## Run 59 stress 0.03675998
## Run 60 stress 0.03751766
## Run 61 stress 0.03675996
## Run 62 stress 0.2155239
## Run 63 stress 0.03752418
## Run 64 stress 0.03172159
## ... Procrustes: rmse 1.243733e-05 max resid 3.730288e-05
## ... Similar to previous best
## Run 65 stress 0.03172164
## ... Procrustes: rmse 6.024307e-05 max resid 0.0001772209
## ... Similar to previous best
## Run 66 stress 0.03172161
## ... Procrustes: rmse 7.101092e-05 max resid 0.0002221434
## ... Similar to previous best
## Run 67 stress 0.03866127
## Run 68 stress 0.03577044
## Run 69 stress 0.03866816
## Run 70 stress 0.03866811
## Run 71 stress 0.0317216
## ... Procrustes: rmse 2.197235e-05 max resid 7.691983e-05
## ... Similar to previous best
## Run 72 stress 0.03675813
## Run 73 stress 0.03172159
## ... Procrustes: rmse 7.236039e-06 max resid 2.221118e-05
## ... Similar to previous best
## Run 74 stress 0.03751758
## Run 75 stress 0.05308619
## Run 76 stress 0.03675801
## Run 77 stress 0.03644759
## Run 78 stress 0.03752412
## Run 79 stress 0.03751884
## Run 80 stress 0.2156843
## Run 81 stress 0.03675772
## Run 82 stress 0.03866132
## Run 83 stress 0.03172161
## ... Procrustes: rmse 3.468174e-05 max resid 0.0001029894
## ... Similar to previous best
## Run 84 stress 0.03393548
## Run 85 stress 0.03172162
## ... Procrustes: rmse 2.129239e-05 max resid 6.507502e-05
## ... Similar to previous best
## Run 86 stress 0.03644759
## Run 87 stress 0.03172159
## ... Procrustes: rmse 2.322988e-05 max resid 5.713447e-05
## ... Similar to previous best
## Run 88 stress 0.03393549
## Run 89 stress 0.0317216
## ... Procrustes: rmse 1.761044e-05 max resid 5.284032e-05
## ... Similar to previous best
## Run 90 stress 0.0445539
## Run 91 stress 0.03751757
## Run 92 stress 0.03172161
## ... Procrustes: rmse 2.93477e-05 max resid 9.10781e-05
## ... Similar to previous best
## Run 93 stress 0.03866129
## Run 94 stress 0.03393551
## Run 95 stress 0.03644817
## Run 96 stress 0.03751757
## Run 97 stress 0.03172161
## ... Procrustes: rmse 9.638319e-06 max resid 2.928546e-05
## ... Similar to previous best
## Run 98 stress 0.036758
## Run 99 stress 0.04457726
## Run 100 stress 0.03172159
## ... Procrustes: rmse 1.877859e-05 max resid 5.718608e-05
## ... Similar to previous best
## Run 101 stress 0.03752411
## Run 102 stress 0.03577051
## Run 103 stress 0.03393549
## Run 104 stress 0.03752419
## Run 105 stress 0.03393549
## Run 106 stress 0.03676001
## Run 107 stress 0.0375176
## Run 108 stress 0.03577097
## Run 109 stress 0.03752411
## Run 110 stress 0.03172162
## ... Procrustes: rmse 3.812986e-05 max resid 0.0001163101
## ... Similar to previous best
## Run 111 stress 0.03172161
## ... Procrustes: rmse 3.631811e-05 max resid 0.0001212794
## ... Similar to previous best
## Run 112 stress 0.03866125
## Run 113 stress 0.03172162
## ... Procrustes: rmse 4.098181e-05 max resid 0.0001251281
## ... Similar to previous best
## Run 114 stress 0.03393548
## Run 115 stress 0.03751757
## Run 116 stress 0.03172164
## ... Procrustes: rmse 5.523572e-05 max resid 0.0001678021
## ... Similar to previous best
## Run 117 stress 0.03577094
## Run 118 stress 0.03866129
## Run 119 stress 0.04461507
## Run 120 stress 0.0317216
## ... Procrustes: rmse 2.353647e-05 max resid 7.218314e-05
## ... Similar to previous best
## Run 121 stress 0.03866816
## Run 122 stress 0.03172159
## ... Procrustes: rmse 1.129018e-05 max resid 3.525418e-05
## ... Similar to previous best
## Run 123 stress 0.03644761
## Run 124 stress 0.03393551
## Run 125 stress 0.03172164
## ... Procrustes: rmse 6.028574e-05 max resid 0.0001771439
## ... Similar to previous best
## Run 126 stress 0.04065276
## Run 127 stress 0.03675811
## Run 128 stress 0.03873358
## Run 129 stress 0.03172159
## ... Procrustes: rmse 4.986826e-06 max resid 1.623875e-05
## ... Similar to previous best
## Run 130 stress 0.03172159
## ... Procrustes: rmse 4.094569e-05 max resid 0.0001267432
## ... Similar to previous best
## Run 131 stress 0.03577096
## Run 132 stress 0.03752411
## Run 133 stress 0.03393549
## Run 134 stress 0.0364482
## Run 135 stress 0.03752411
## Run 136 stress 0.03172159
## ... Procrustes: rmse 5.101084e-06 max resid 1.502386e-05
## ... Similar to previous best
## Run 137 stress 0.03644819
## Run 138 stress 0.03393551
## Run 139 stress 0.03675995
## Run 140 stress 0.0317216
## ... Procrustes: rmse 9.347038e-06 max resid 3.303627e-05
## ... Similar to previous best
## Run 141 stress 0.03866132
## Run 142 stress 0.04599195
## Run 143 stress 0.03577052
## Run 144 stress 0.0375188
## Run 145 stress 0.03644825
## Run 146 stress 0.03172159
## ... Procrustes: rmse 1.861399e-05 max resid 6.441513e-05
## ... Similar to previous best
## Run 147 stress 0.03751763
## Run 148 stress 0.03577049
## Run 149 stress 0.03577094
## Run 150 stress 0.03393548
## Run 151 stress 0.03393549
## Run 152 stress 0.03577098
## Run 153 stress 0.04064951
## Run 154 stress 0.03577092
## Run 155 stress 0.3808352
## Run 156 stress 0.03866128
## Run 157 stress 0.0364482
## Run 158 stress 0.03866127
## Run 159 stress 0.2151142
## Run 160 stress 0.0317216
## ... Procrustes: rmse 2.393974e-05 max resid 7.555367e-05
## ... Similar to previous best
## Run 161 stress 0.04065276
## Run 162 stress 0.2152295
## Run 163 stress 0.03577045
## Run 164 stress 0.03644764
## Run 165 stress 0.03752415
## Run 166 stress 0.03752264
## Run 167 stress 0.03577098
## Run 168 stress 0.03644822
## Run 169 stress 0.03577046
## Run 170 stress 0.03866129
## Run 171 stress 0.03172159
## ... Procrustes: rmse 4.167718e-05 max resid 0.0001296064
## ... Similar to previous best
## Run 172 stress 0.03577092
## Run 173 stress 0.04065279
## Run 174 stress 0.03172159
## ... Procrustes: rmse 5.201376e-06 max resid 1.249908e-05
## ... Similar to previous best
## Run 175 stress 0.03577055
## Run 176 stress 0.03577044
## Run 177 stress 0.03752409
## Run 178 stress 0.03393548
## Run 179 stress 0.0317216
## ... Procrustes: rmse 2.378708e-05 max resid 7.217108e-05
## ... Similar to previous best
## Run 180 stress 0.03577093
## Run 181 stress 0.04064952
## Run 182 stress 0.03644759
## Run 183 stress 0.03644766
## Run 184 stress 0.03393553
## Run 185 stress 0.03393548
## Run 186 stress 0.03172162
## ... Procrustes: rmse 4.209568e-05 max resid 0.0001288405
## ... Similar to previous best
## Run 187 stress 0.03172159
## ... Procrustes: rmse 1.343114e-05 max resid 4.174197e-05
## ... Similar to previous best
## Run 188 stress 0.03644824
## Run 189 stress 0.03393549
## Run 190 stress 0.03172158
## ... New best solution
## ... Procrustes: rmse 4.635384e-06 max resid 1.201008e-05
## ... Similar to previous best
## Run 191 stress 0.03866813
## Run 192 stress 0.04618969
## Run 193 stress 0.03393548
## Run 194 stress 0.03675813
## Run 195 stress 0.04457719
## Run 196 stress 0.2149491
## Run 197 stress 0.03866126
## Run 198 stress 0.2155578
## Run 199 stress 0.04064953
## Run 200 stress 0.03866125
## Run 201 stress 0.03577048
## Run 202 stress 0.03866127
## Run 203 stress 0.03675765
## Run 204 stress 0.03393549
## Run 205 stress 0.2155578
## Run 206 stress 0.03866813
## Run 207 stress 0.03644817
## Run 208 stress 0.03577055
## Run 209 stress 0.03393549
## Run 210 stress 0.03172159
## ... Procrustes: rmse 1.357796e-05 max resid 4.822393e-05
## ... Similar to previous best
## Run 211 stress 0.03172158
## ... New best solution
## ... Procrustes: rmse 1.015154e-05 max resid 3.189155e-05
## ... Similar to previous best
## Run 212 stress 0.03172159
## ... Procrustes: rmse 2.172457e-05 max resid 6.653185e-05
## ... Similar to previous best
## Run 213 stress 0.03393556
## Run 214 stress 0.03751883
## Run 215 stress 0.03172159
## ... Procrustes: rmse 3.023497e-05 max resid 0.0001067622
## ... Similar to previous best
## Run 216 stress 0.03172159
## ... Procrustes: rmse 1.924229e-05 max resid 6.571431e-05
## ... Similar to previous best
## Run 217 stress 0.03866125
## Run 218 stress 0.03644762
## Run 219 stress 0.04064952
## Run 220 stress 0.03172158
## ... Procrustes: rmse 1.258584e-05 max resid 4.118397e-05
## ... Similar to previous best
## Run 221 stress 0.03172161
## ... Procrustes: rmse 4.755385e-05 max resid 0.0001504797
## ... Similar to previous best
## Run 222 stress 0.0364476
## Run 223 stress 0.03172158
## ... Procrustes: rmse 1.029439e-05 max resid 3.240301e-05
## ... Similar to previous best
## Run 224 stress 0.03172159
## ... Procrustes: rmse 2.35693e-05 max resid 8.156604e-05
## ... Similar to previous best
## Run 225 stress 0.03675998
## Run 226 stress 0.03675996
## Run 227 stress 0.03172159
## ... Procrustes: rmse 2.26084e-05 max resid 6.676822e-05
## ... Similar to previous best
## Run 228 stress 0.03644819
## Run 229 stress 0.04064946
## Run 230 stress 0.03644824
## Run 231 stress 0.03393549
## Run 232 stress 0.03644761
## Run 233 stress 0.3738536
## Run 234 stress 0.04598733
## Run 235 stress 0.03866812
## Run 236 stress 0.03644761
## Run 237 stress 0.03644761
## Run 238 stress 0.0317216
## ... Procrustes: rmse 3.533371e-05 max resid 0.0001072037
## ... Similar to previous best
## Run 239 stress 0.03644818
## Run 240 stress 0.03866133
## Run 241 stress 0.03866126
## Run 242 stress 0.03866131
## Run 243 stress 0.03172161
## ... Procrustes: rmse 5.196744e-05 max resid 0.0001795443
## ... Similar to previous best
## Run 244 stress 0.03172158
## ... Procrustes: rmse 1.019076e-05 max resid 3.012645e-05
## ... Similar to previous best
## Run 245 stress 0.03751759
## Run 246 stress 0.03577051
## Run 247 stress 0.03172159
## ... Procrustes: rmse 2.015976e-05 max resid 6.226827e-05
## ... Similar to previous best
## Run 248 stress 0.0317216
## ... Procrustes: rmse 3.288383e-05 max resid 9.98017e-05
## ... Similar to previous best
## Run 249 stress 0.03873351
## Run 250 stress 0.1883273
## Run 251 stress 0.03866127
## Run 252 stress 0.04064946
## Run 253 stress 0.03172164
## ... Procrustes: rmse 7.226193e-05 max resid 0.0002229758
## ... Similar to previous best
## Run 254 stress 0.03644761
## Run 255 stress 0.03172159
## ... Procrustes: rmse 2.429931e-05 max resid 7.281381e-05
## ... Similar to previous best
## Run 256 stress 0.0317216
## ... Procrustes: rmse 4.322987e-05 max resid 0.0001307226
## ... Similar to previous best
## Run 257 stress 0.03752264
## Run 258 stress 0.03644764
## Run 259 stress 0.03172159
## ... Procrustes: rmse 2.159044e-05 max resid 6.564351e-05
## ... Similar to previous best
## Run 260 stress 0.0317216
## ... Procrustes: rmse 4.589284e-05 max resid 0.0001409641
## ... Similar to previous best
## Run 261 stress 0.03866126
## Run 262 stress 0.03577054
## Run 263 stress 0.03577091
## Run 264 stress 0.03577051
## Run 265 stress 0.03577095
## Run 266 stress 0.03393551
## Run 267 stress 0.03577089
## Run 268 stress 0.03172166
## ... Procrustes: rmse 8.251242e-05 max resid 0.0002496492
## ... Similar to previous best
## Run 269 stress 0.04064948
## Run 270 stress 0.04065271
## Run 271 stress 0.03172158
## ... Procrustes: rmse 6.424812e-06 max resid 1.933787e-05
## ... Similar to previous best
## Run 272 stress 0.03577046
## Run 273 stress 0.03752409
## Run 274 stress 0.0317216
## ... Procrustes: rmse 4.611654e-05 max resid 0.00014087
## ... Similar to previous best
## Run 275 stress 0.03393549
## Run 276 stress 0.04599193
## Run 277 stress 0.03172158
## ... Procrustes: rmse 1.277194e-05 max resid 4.058951e-05
## ... Similar to previous best
## Run 278 stress 0.03866812
## Run 279 stress 0.03752417
## Run 280 stress 0.03752416
## Run 281 stress 0.03644766
## Run 282 stress 0.03172159
## ... Procrustes: rmse 1.746034e-05 max resid 6.038519e-05
## ... Similar to previous best
## Run 283 stress 0.03675999
## Run 284 stress 0.03676005
## Run 285 stress 0.03393548
## Run 286 stress 0.03644763
## Run 287 stress 0.03172161
## ... Procrustes: rmse 5.191311e-05 max resid 0.0001671789
## ... Similar to previous best
## Run 288 stress 0.03393551
## Run 289 stress 0.03172164
## ... Procrustes: rmse 6.213399e-05 max resid 0.0002026418
## ... Similar to previous best
## Run 290 stress 0.03866127
## Run 291 stress 0.03644767
## Run 292 stress 0.0317216
## ... Procrustes: rmse 2.652908e-05 max resid 8.941666e-05
## ... Similar to previous best
## Run 293 stress 0.0339355
## Run 294 stress 0.03644763
## Run 295 stress 0.03676003
## Run 296 stress 0.215679
## Run 297 stress 0.04065273
## Run 298 stress 0.04064949
## Run 299 stress 0.03577043
## Run 300 stress 0.0339355
## Run 301 stress 0.0367577
## Run 302 stress 0.03644818
## Run 303 stress 0.03393548
## Run 304 stress 0.0317216
## ... Procrustes: rmse 3.679027e-05 max resid 0.0001306626
## ... Similar to previous best
## Run 305 stress 0.03393548
## Run 306 stress 0.03393548
## Run 307 stress 0.03172159
## ... Procrustes: rmse 4.789629e-06 max resid 1.469686e-05
## ... Similar to previous best
## Run 308 stress 0.04461768
## Run 309 stress 0.03675807
## Run 310 stress 0.03172164
## ... Procrustes: rmse 7.130637e-05 max resid 0.0002134348
## ... Similar to previous best
## Run 311 stress 0.03577044
## Run 312 stress 0.03644818
## Run 313 stress 0.03172163
## ... Procrustes: rmse 6.887714e-05 max resid 0.0002161924
## ... Similar to previous best
## Run 314 stress 0.03644768
## Run 315 stress 0.03752419
## Run 316 stress 0.04457719
## Run 317 stress 0.03644818
## Run 318 stress 0.04064955
## Run 319 stress 0.03172159
## ... Procrustes: rmse 2.239151e-05 max resid 6.883682e-05
## ... Similar to previous best
## Run 320 stress 0.03577051
## Run 321 stress 0.03172158
## ... Procrustes: rmse 1.024655e-05 max resid 3.078095e-05
## ... Similar to previous best
## Run 322 stress 0.03644764
## Run 323 stress 0.0317216
## ... Procrustes: rmse 3.519276e-05 max resid 0.0001244958
## ... Similar to previous best
## Run 324 stress 0.03675998
## Run 325 stress 0.05475657
## Run 326 stress 0.03644761
## Run 327 stress 0.03577096
## Run 328 stress 0.03172159
## ... Procrustes: rmse 2.871673e-05 max resid 9.011797e-05
## ... Similar to previous best
## Run 329 stress 0.03172159
## ... Procrustes: rmse 1.674159e-05 max resid 5.713531e-05
## ... Similar to previous best
## Run 330 stress 0.03172161
## ... Procrustes: rmse 5.054049e-05 max resid 0.0001796464
## ... Similar to previous best
## Run 331 stress 0.03393551
## Run 332 stress 0.0339355
## Run 333 stress 0.0317216
## ... Procrustes: rmse 2.593314e-05 max resid 8.930548e-05
## ... Similar to previous best
## Run 334 stress 0.03577098
## Run 335 stress 0.03393551
## Run 336 stress 0.03172159
## ... Procrustes: rmse 2.861985e-05 max resid 8.718963e-05
## ... Similar to previous best
## Run 337 stress 0.0364482
## Run 338 stress 0.03675767
## Run 339 stress 0.03393549
## Run 340 stress 0.0375176
## Run 341 stress 0.03675999
## Run 342 stress 0.04455391
## Run 343 stress 0.03393552
## Run 344 stress 0.03751768
## Run 345 stress 0.03393548
## Run 346 stress 0.03644817
## Run 347 stress 0.1736602
## Run 348 stress 0.0375188
## Run 349 stress 0.0339355
## Run 350 stress 0.03577046
## Run 351 stress 0.05475663
## Run 352 stress 0.2156908
## Run 353 stress 0.03393548
## Run 354 stress 0.03393553
## Run 355 stress 0.03577044
## Run 356 stress 0.03172159
## ... Procrustes: rmse 1.928647e-05 max resid 6.015821e-05
## ... Similar to previous best
## Run 357 stress 0.03393548
## Run 358 stress 0.04457724
## Run 359 stress 0.2155465
## Run 360 stress 0.04461495
## Run 361 stress 0.03675765
## Run 362 stress 0.03644761
## Run 363 stress 0.03644769
## Run 364 stress 0.03577097
## Run 365 stress 0.03172161
## ... Procrustes: rmse 5.126539e-05 max resid 0.0001475918
## ... Similar to previous best
## Run 366 stress 0.0317216
## ... Procrustes: rmse 3.32472e-05 max resid 0.0001061806
## ... Similar to previous best
## Run 367 stress 0.04599197
## Run 368 stress 0.03644771
## Run 369 stress 0.0340388
## Run 370 stress 0.03393551
## Run 371 stress 0.03172158
## ... Procrustes: rmse 1.606546e-05 max resid 4.8724e-05
## ... Similar to previous best
## Run 372 stress 0.03751889
## Run 373 stress 0.1873379
## Run 374 stress 0.03675765
## Run 375 stress 0.03866818
## Run 376 stress 0.03172158
## ... Procrustes: rmse 9.694067e-06 max resid 2.804125e-05
## ... Similar to previous best
## Run 377 stress 0.03577104
## Run 378 stress 0.03172161
## ... Procrustes: rmse 5.41734e-05 max resid 0.0001651783
## ... Similar to previous best
## Run 379 stress 0.03866812
## Run 380 stress 0.04065273
## Run 381 stress 0.03577097
## Run 382 stress 0.04456405
## Run 383 stress 0.03752411
## Run 384 stress 0.03866129
## Run 385 stress 0.0317216
## ... Procrustes: rmse 3.364867e-05 max resid 0.0001210813
## ... Similar to previous best
## Run 386 stress 0.03172158
## ... Procrustes: rmse 1.199471e-05 max resid 3.61846e-05
## ... Similar to previous best
## Run 387 stress 0.03172159
## ... Procrustes: rmse 3.302034e-05 max resid 0.0001012959
## ... Similar to previous best
## Run 388 stress 0.03393553
## Run 389 stress 0.0339355
## Run 390 stress 0.03577045
## Run 391 stress 0.05308618
## Run 392 stress 0.03393548
## Run 393 stress 0.03644764
## Run 394 stress 0.03172166
## ... Procrustes: rmse 7.074441e-05 max resid 0.0002160201
## ... Similar to previous best
## Run 395 stress 0.0317216
## ... Procrustes: rmse 3.868716e-05 max resid 0.0001213492
## ... Similar to previous best
## Run 396 stress 0.03172159
## ... Procrustes: rmse 2.55762e-05 max resid 7.121404e-05
## ... Similar to previous best
## Run 397 stress 0.03675799
## Run 398 stress 0.03752266
## Run 399 stress 0.03577096
## Run 400 stress 0.03393548
## Run 401 stress 0.03866128
## Run 402 stress 0.03676005
## Run 403 stress 0.03866126
## Run 404 stress 0.03393551
## Run 405 stress 0.0386613
## Run 406 stress 0.05475707
## Run 407 stress 0.03675775
## Run 408 stress 0.03172158
## ... Procrustes: rmse 7.26745e-06 max resid 1.821956e-05
## ... Similar to previous best
## Run 409 stress 0.03866129
## Run 410 stress 0.03675996
## Run 411 stress 0.0317216
## ... Procrustes: rmse 3.510869e-05 max resid 0.0001079812
## ... Similar to previous best
## Run 412 stress 0.03577047
## Run 413 stress 0.1830269
## Run 414 stress 0.03172161
## ... Procrustes: rmse 4.791954e-05 max resid 0.0001500392
## ... Similar to previous best
## Run 415 stress 0.03644821
## Run 416 stress 0.03172162
## ... Procrustes: rmse 5.443775e-05 max resid 0.0001647468
## ... Similar to previous best
## Run 417 stress 0.03644827
## Run 418 stress 0.03644763
## Run 419 stress 0.03675996
## Run 420 stress 0.03752264
## Run 421 stress 0.03577044
## Run 422 stress 0.03644768
## Run 423 stress 0.03172159
## ... Procrustes: rmse 2.082013e-05 max resid 6.376265e-05
## ... Similar to previous best
## Run 424 stress 0.03644816
## Run 425 stress 0.03577058
## Run 426 stress 0.04064952
## Run 427 stress 0.1906383
## Run 428 stress 0.2156908
## Run 429 stress 0.03393551
## Run 430 stress 0.03393548
## Run 431 stress 0.03644763
## Run 432 stress 0.03873352
## Run 433 stress 0.03393551
## Run 434 stress 0.03866126
## Run 435 stress 0.03172163
## ... Procrustes: rmse 6.630193e-05 max resid 0.0002013991
## ... Similar to previous best
## Run 436 stress 0.03577047
## Run 437 stress 0.03172159
## ... Procrustes: rmse 1.301653e-05 max resid 4.433644e-05
## ... Similar to previous best
## Run 438 stress 0.03675766
## Run 439 stress 0.0339355
## Run 440 stress 0.0406495
## Run 441 stress 0.03577048
## Run 442 stress 0.03675806
## Run 443 stress 0.03393549
## Run 444 stress 0.03393552
## Run 445 stress 0.03577048
## Run 446 stress 0.03172161
## ... Procrustes: rmse 4.883999e-05 max resid 0.0001573987
## ... Similar to previous best
## Run 447 stress 0.03577089
## Run 448 stress 0.03675807
## Run 449 stress 0.03644759
## Run 450 stress 0.03172159
## ... Procrustes: rmse 2.119965e-05 max resid 6.860624e-05
## ... Similar to previous best
## Run 451 stress 0.03644762
## Run 452 stress 0.03866129
## Run 453 stress 0.03752271
## Run 454 stress 0.04599197
## Run 455 stress 0.03644823
## Run 456 stress 0.04457724
## Run 457 stress 0.04064954
## Run 458 stress 0.03675801
## Run 459 stress 0.1812318
## Run 460 stress 0.03866124
## Run 461 stress 0.03577099
## Run 462 stress 0.03172161
## ... Procrustes: rmse 4.267956e-05 max resid 0.0001531415
## ... Similar to previous best
## Run 463 stress 0.03866811
## Run 464 stress 0.03644819
## Run 465 stress 0.03172159
## ... Procrustes: rmse 2.820769e-05 max resid 0.0001001068
## ... Similar to previous best
## Run 466 stress 0.03644763
## Run 467 stress 0.03644763
## Run 468 stress 0.03751878
## Run 469 stress 0.03393549
## Run 470 stress 0.03675998
## Run 471 stress 0.03172164
## ... Procrustes: rmse 7.302234e-05 max resid 0.0002227704
## ... Similar to previous best
## Run 472 stress 0.0367602
## Run 473 stress 0.2156323
## Run 474 stress 0.2156679
## Run 475 stress 0.03644765
## Run 476 stress 0.03866129
## Run 477 stress 0.03393548
## Run 478 stress 0.03644759
## Run 479 stress 0.03393548
## Run 480 stress 0.03676002
## Run 481 stress 0.0364476
## Run 482 stress 0.03577049
## Run 483 stress 0.03866126
## Run 484 stress 0.03577048
## Run 485 stress 0.0317216
## ... Procrustes: rmse 4.247788e-05 max resid 0.0001433155
## ... Similar to previous best
## Run 486 stress 0.03393549
## Run 487 stress 0.03393548
## Run 488 stress 0.0406495
## Run 489 stress 0.03644762
## Run 490 stress 0.03577104
## Run 491 stress 0.03866129
## Run 492 stress 0.03866816
## Run 493 stress 0.03393552
## Run 494 stress 0.03172159
## ... Procrustes: rmse 2.925937e-05 max resid 0.0001034529
## ... Similar to previous best
## Run 495 stress 0.03866811
## Run 496 stress 0.03752409
## Run 497 stress 0.03393548
## Run 498 stress 0.04458616
## Run 499 stress 0.03752413
## Run 500 stress 0.03752273
## *** Best solution repeated 65 timesround(fd_NMDS$stress, digits = 2)## [1] 0.03# Mixed and stratified lakes
fdms_NMDS <- metaMDS(fdms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.0297451
## Run 1 stress 0.0239786
## ... New best solution
## ... Procrustes: rmse 0.05177576 max resid 0.1310531
## Run 2 stress 0.03160261
## Run 3 stress 0.02975951
## Run 4 stress 0.03040206
## Run 5 stress 0.06145217
## Run 6 stress 0.0272182
## Run 7 stress 0.03162927
## Run 8 stress 0.02721655
## Run 9 stress 0.03035655
## Run 10 stress 0.03035655
## Run 11 stress 0.0613575
## Run 12 stress 0.03162942
## Run 13 stress 0.0297451
## Run 14 stress 0.06124242
## Run 15 stress 0.03164951
## Run 16 stress 0.0297451
## Run 17 stress 0.06145202
## Run 18 stress 0.03162191
## Run 19 stress 0.0303565
## Run 20 stress 0.06148343
## Run 21 stress 0.06085681
## Run 22 stress 0.02721656
## Run 23 stress 0.02975952
## Run 24 stress 0.03035658
## Run 25 stress 0.03160243
## Run 26 stress 0.06135757
## Run 27 stress 0.02975951
## Run 28 stress 0.03164954
## Run 29 stress 0.03035935
## Run 30 stress 0.02975952
## Run 31 stress 0.06748642
## Run 32 stress 0.0297451
## Run 33 stress 0.02975954
## Run 34 stress 0.02721811
## Run 35 stress 0.03035659
## Run 36 stress 0.0297451
## Run 37 stress 0.06749084
## Run 38 stress 0.02397858
## ... New best solution
## ... Procrustes: rmse 2.230542e-05 max resid 4.083353e-05
## ... Similar to previous best
## Run 39 stress 0.03035657
## Run 40 stress 0.03035927
## Run 41 stress 0.02975952
## Run 42 stress 0.02975952
## Run 43 stress 0.06085669
## Run 44 stress 0.03162196
## Run 45 stress 0.02974511
## Run 46 stress 0.02974511
## Run 47 stress 0.0297451
## Run 48 stress 0.02721815
## Run 49 stress 0.02721657
## Run 50 stress 0.02721809
## Run 51 stress 0.02397857
## ... New best solution
## ... Procrustes: rmse 2.031708e-05 max resid 3.523251e-05
## ... Similar to previous best
## Run 52 stress 0.02723761
## Run 53 stress 0.02721815
## Run 54 stress 0.06082257
## Run 55 stress 0.02721661
## Run 56 stress 0.03035666
## Run 57 stress 0.03160269
## Run 58 stress 0.02974511
## Run 59 stress 0.0297595
## Run 60 stress 0.02721659
## Run 61 stress 0.02397859
## ... Procrustes: rmse 0.0001002507 max resid 0.0001562791
## ... Similar to previous best
## Run 62 stress 0.02975951
## Run 63 stress 0.02974512
## Run 64 stress 0.02721655
## Run 65 stress 0.02397859
## ... Procrustes: rmse 3.804309e-05 max resid 6.718769e-05
## ... Similar to previous best
## Run 66 stress 0.03035655
## Run 67 stress 0.06123865
## Run 68 stress 0.0297451
## Run 69 stress 0.02974513
## Run 70 stress 0.0303565
## Run 71 stress 0.02975952
## Run 72 stress 0.03035929
## Run 73 stress 0.03035649
## Run 74 stress 0.02399583
## ... Procrustes: rmse 0.00128965 max resid 0.003833083
## ... Similar to previous best
## Run 75 stress 0.07130468
## Run 76 stress 0.03164927
## Run 77 stress 0.06128628
## Run 78 stress 0.0297451
## Run 79 stress 0.0297595
## Run 80 stress 0.02399586
## ... Procrustes: rmse 0.001282703 max resid 0.003778664
## ... Similar to previous best
## Run 81 stress 0.06123847
## Run 82 stress 0.02721655
## Run 83 stress 0.03035658
## Run 84 stress 0.06123851
## Run 85 stress 0.03162195
## Run 86 stress 0.0272375
## Run 87 stress 0.02721813
## Run 88 stress 0.03160259
## Run 89 stress 0.02974512
## Run 90 stress 0.03035926
## Run 91 stress 0.0297451
## Run 92 stress 0.0272166
## Run 93 stress 0.03160247
## Run 94 stress 0.02721657
## Run 95 stress 0.06085684
## Run 96 stress 0.03035925
## Run 97 stress 0.0713033
## Run 98 stress 0.02721662
## Run 99 stress 0.02974514
## Run 100 stress 0.02975951
## Run 101 stress 0.0316219
## Run 102 stress 0.06748643
## Run 103 stress 0.03035658
## Run 104 stress 0.0303565
## Run 105 stress 0.0297451
## Run 106 stress 0.02723721
## Run 107 stress 0.03162193
## Run 108 stress 0.02975953
## Run 109 stress 0.06134225
## Run 110 stress 0.03164944
## Run 111 stress 0.02974514
## Run 112 stress 0.06749083
## Run 113 stress 0.03162193
## Run 114 stress 0.02721812
## Run 115 stress 0.0303565
## Run 116 stress 0.0272181
## Run 117 stress 0.0297451
## Run 118 stress 0.03162192
## Run 119 stress 0.06128632
## Run 120 stress 0.03035925
## Run 121 stress 0.03035649
## Run 122 stress 0.03035649
## Run 123 stress 0.02975951
## Run 124 stress 0.06749075
## Run 125 stress 0.02721655
## Run 126 stress 0.0297451
## Run 127 stress 0.02399587
## ... Procrustes: rmse 0.001327819 max resid 0.004070277
## ... Similar to previous best
## Run 128 stress 0.02721663
## Run 129 stress 0.02721654
## Run 130 stress 0.02723758
## Run 131 stress 0.03162917
## Run 132 stress 0.02974514
## Run 133 stress 0.02974511
## Run 134 stress 0.03040212
## Run 135 stress 0.02723721
## Run 136 stress 0.02974511
## Run 137 stress 0.0272166
## Run 138 stress 0.03035935
## Run 139 stress 0.07130478
## Run 140 stress 0.03035651
## Run 141 stress 0.03035926
## Run 142 stress 0.06749083
## Run 143 stress 0.02974513
## Run 144 stress 0.03160248
## Run 145 stress 0.0297451
## Run 146 stress 0.06085697
## Run 147 stress 0.06128623
## Run 148 stress 0.0303565
## Run 149 stress 0.06145188
## Run 150 stress 0.06145206
## Run 151 stress 0.03035925
## Run 152 stress 0.02721654
## Run 153 stress 0.03160241
## Run 154 stress 0.02975954
## Run 155 stress 0.03035925
## Run 156 stress 0.0272375
## Run 157 stress 0.03035924
## Run 158 stress 0.06134226
## Run 159 stress 0.02975951
## Run 160 stress 0.02399583
## ... Procrustes: rmse 0.001316354 max resid 0.004007681
## ... Similar to previous best
## Run 161 stress 0.02399583
## ... Procrustes: rmse 0.001312855 max resid 0.003987825
## ... Similar to previous best
## Run 162 stress 0.06128632
## Run 163 stress 0.06085715
## Run 164 stress 0.03035928
## Run 165 stress 0.02397856
## ... New best solution
## ... Procrustes: rmse 6.556799e-05 max resid 0.0001094471
## ... Similar to previous best
## Run 166 stress 0.2528081
## Run 167 stress 0.03035937
## Run 168 stress 0.03160254
## Run 169 stress 0.02975951
## Run 170 stress 0.03035933
## Run 171 stress 0.03162191
## Run 172 stress 0.02397859
## ... Procrustes: rmse 9.535803e-05 max resid 0.0001567091
## ... Similar to previous best
## Run 173 stress 0.0608567
## Run 174 stress 0.02721658
## Run 175 stress 0.03035651
## Run 176 stress 0.0612424
## Run 177 stress 0.02974511
## Run 178 stress 0.0297451
## Run 179 stress 0.03035658
## Run 180 stress 0.0272372
## Run 181 stress 0.03040222
## Run 182 stress 0.03164935
## Run 183 stress 0.0297451
## Run 184 stress 0.03162945
## Run 185 stress 0.06082285
## Run 186 stress 0.02721814
## Run 187 stress 0.02721657
## Run 188 stress 0.06145254
## Run 189 stress 0.02723752
## Run 190 stress 0.06082266
## Run 191 stress 0.02974511
## Run 192 stress 0.02721662
## Run 193 stress 0.03035659
## Run 194 stress 0.02721809
## Run 195 stress 0.02721812
## Run 196 stress 0.02975953
## Run 197 stress 0.0297451
## Run 198 stress 0.02721656
## Run 199 stress 0.07130341
## Run 200 stress 0.02399583
## ... Procrustes: rmse 0.001295518 max resid 0.00380844
## ... Similar to previous best
## Run 201 stress 0.03162205
## Run 202 stress 0.03035662
## Run 203 stress 0.03035655
## Run 204 stress 0.02397857
## ... Procrustes: rmse 8.101272e-05 max resid 0.0001378887
## ... Similar to previous best
## Run 205 stress 0.0297451
## Run 206 stress 0.02399587
## ... Procrustes: rmse 0.001321141 max resid 0.004006936
## ... Similar to previous best
## Run 207 stress 0.02721818
## Run 208 stress 0.02975951
## Run 209 stress 0.02975952
## Run 210 stress 0.02721815
## Run 211 stress 0.03035653
## Run 212 stress 0.03035651
## Run 213 stress 0.060823
## Run 214 stress 0.02975952
## Run 215 stress 0.02975951
## Run 216 stress 0.02721813
## Run 217 stress 0.02975958
## Run 218 stress 0.02975951
## Run 219 stress 0.02721811
## Run 220 stress 0.07130476
## Run 221 stress 0.02723752
## Run 222 stress 0.02974514
## Run 223 stress 0.06082294
## Run 224 stress 0.36574
## Run 225 stress 0.03035655
## Run 226 stress 0.07130469
## Run 227 stress 0.02721658
## Run 228 stress 0.02974512
## Run 229 stress 0.06134537
## Run 230 stress 0.03164927
## Run 231 stress 0.06128629
## Run 232 stress 0.03035926
## Run 233 stress 0.02974512
## Run 234 stress 0.03162915
## Run 235 stress 0.03160249
## Run 236 stress 0.02397856
## ... Procrustes: rmse 6.029941e-05 max resid 0.0001003632
## ... Similar to previous best
## Run 237 stress 0.02975951
## Run 238 stress 0.02974513
## Run 239 stress 0.0297595
## Run 240 stress 0.03035934
## Run 241 stress 0.02974512
## Run 242 stress 0.02975951
## Run 243 stress 0.0297595
## Run 244 stress 0.02723725
## Run 245 stress 0.03164958
## Run 246 stress 0.02975952
## Run 247 stress 0.02974511
## Run 248 stress 0.02723718
## Run 249 stress 0.02725041
## Run 250 stress 0.03035652
## Run 251 stress 0.03160241
## Run 252 stress 0.02721656
## Run 253 stress 0.02975951
## Run 254 stress 0.02399587
## ... Procrustes: rmse 0.001320687 max resid 0.004006086
## ... Similar to previous best
## Run 255 stress 0.03035925
## Run 256 stress 0.06128617
## Run 257 stress 0.02399584
## ... Procrustes: rmse 0.001314103 max resid 0.00396271
## ... Similar to previous best
## Run 258 stress 0.06749083
## Run 259 stress 0.03162197
## Run 260 stress 0.02975953
## Run 261 stress 0.02721659
## Run 262 stress 0.2529907
## Run 263 stress 0.02723752
## Run 264 stress 0.06085705
## Run 265 stress 0.07130349
## Run 266 stress 0.03040208
## Run 267 stress 0.03035928
## Run 268 stress 0.02723751
## Run 269 stress 0.03160248
## Run 270 stress 0.06148333
## Run 271 stress 0.03160261
## Run 272 stress 0.02399587
## ... Procrustes: rmse 0.001323468 max resid 0.004020865
## ... Similar to previous best
## Run 273 stress 0.02721658
## Run 274 stress 0.02721656
## Run 275 stress 0.02975951
## Run 276 stress 0.0297451
## Run 277 stress 0.03162191
## Run 278 stress 0.02974511
## Run 279 stress 0.02721809
## Run 280 stress 0.02397856
## ... New best solution
## ... Procrustes: rmse 2.48319e-05 max resid 4.72834e-05
## ... Similar to previous best
## Run 281 stress 0.02721663
## Run 282 stress 0.02975951
## Run 283 stress 0.03035651
## Run 284 stress 0.03163521
## Run 285 stress 0.06082249
## Run 286 stress 0.06123852
## Run 287 stress 0.02974512
## Run 288 stress 0.06749083
## Run 289 stress 0.06135716
## Run 290 stress 0.03160251
## Run 291 stress 0.03035925
## Run 292 stress 0.0303565
## Run 293 stress 0.03040294
## Run 294 stress 0.06130695
## Run 295 stress 0.03035655
## Run 296 stress 0.02721811
## Run 297 stress 0.03035924
## Run 298 stress 0.0297595
## Run 299 stress 0.02975952
## Run 300 stress 0.06082298
## Run 301 stress 0.02399582
## ... Procrustes: rmse 0.001308731 max resid 0.003941133
## ... Similar to previous best
## Run 302 stress 0.03160258
## Run 303 stress 0.03160264
## Run 304 stress 0.03035655
## Run 305 stress 0.3657398
## Run 306 stress 0.06082303
## Run 307 stress 0.02397856
## ... Procrustes: rmse 3.525046e-05 max resid 5.188045e-05
## ... Similar to previous best
## Run 308 stress 0.02721659
## Run 309 stress 0.06145153
## Run 310 stress 0.0303565
## Run 311 stress 0.02721809
## Run 312 stress 0.03035652
## Run 313 stress 0.06749083
## Run 314 stress 0.06128604
## Run 315 stress 0.02975951
## Run 316 stress 0.03162923
## Run 317 stress 0.02397862
## ... Procrustes: rmse 8.150886e-05 max resid 0.0001489861
## ... Similar to previous best
## Run 318 stress 0.0297451
## Run 319 stress 0.03035664
## Run 320 stress 0.03160271
## Run 321 stress 0.06085652
## Run 322 stress 0.02974511
## Run 323 stress 0.03035939
## Run 324 stress 0.06085683
## Run 325 stress 0.06749084
## Run 326 stress 0.02721809
## Run 327 stress 0.02723755
## Run 328 stress 0.02723757
## Run 329 stress 0.06749083
## Run 330 stress 0.02397855
## ... New best solution
## ... Procrustes: rmse 1.786158e-05 max resid 2.885038e-05
## ... Similar to previous best
## Run 331 stress 0.0297451
## Run 332 stress 0.0297595
## Run 333 stress 0.0272376
## Run 334 stress 0.03160245
## Run 335 stress 0.03035925
## Run 336 stress 0.03035658
## Run 337 stress 0.02974513
## Run 338 stress 0.02397856
## ... Procrustes: rmse 2.626585e-05 max resid 5.024898e-05
## ... Similar to previous best
## Run 339 stress 0.03162924
## Run 340 stress 0.03035649
## Run 341 stress 0.2207036
## Run 342 stress 0.02975951
## Run 343 stress 0.02723755
## Run 344 stress 0.02721811
## Run 345 stress 0.02721656
## Run 346 stress 0.03035664
## Run 347 stress 0.06135755
## Run 348 stress 0.02975952
## Run 349 stress 0.02975952
## Run 350 stress 0.06123846
## Run 351 stress 0.0297451
## Run 352 stress 0.02397859
## ... Procrustes: rmse 7.112146e-05 max resid 0.0001190799
## ... Similar to previous best
## Run 353 stress 0.02974513
## Run 354 stress 0.02399582
## ... Procrustes: rmse 0.001310502 max resid 0.003960146
## ... Similar to previous best
## Run 355 stress 0.0316292
## Run 356 stress 0.02975951
## Run 357 stress 0.02975954
## Run 358 stress 0.03162189
## Run 359 stress 0.0297451
## Run 360 stress 0.03035655
## Run 361 stress 0.0612425
## Run 362 stress 0.03035928
## Run 363 stress 0.02397855
## ... New best solution
## ... Procrustes: rmse 1.726121e-05 max resid 2.965459e-05
## ... Similar to previous best
## Run 364 stress 0.0297451
## Run 365 stress 0.02974512
## Run 366 stress 0.03035656
## Run 367 stress 0.0297451
## Run 368 stress 0.02721665
## Run 369 stress 0.0614522
## Run 370 stress 0.02975952
## Run 371 stress 0.03163539
## Run 372 stress 0.0272181
## Run 373 stress 0.03035658
## Run 374 stress 0.0297451
## Run 375 stress 0.03035935
## Run 376 stress 0.06082302
## Run 377 stress 0.03035937
## Run 378 stress 0.03164956
## Run 379 stress 0.02975953
## Run 380 stress 0.03162947
## Run 381 stress 0.02974511
## Run 382 stress 0.06124247
## Run 383 stress 0.0272181
## Run 384 stress 0.03162203
## Run 385 stress 0.03035651
## Run 386 stress 0.02721661
## Run 387 stress 0.02397857
## ... Procrustes: rmse 5.721691e-05 max resid 9.201962e-05
## ... Similar to previous best
## Run 388 stress 0.0614526
## Run 389 stress 0.06123855
## Run 390 stress 0.02975951
## Run 391 stress 0.02721656
## Run 392 stress 0.03035928
## Run 393 stress 0.03162936
## Run 394 stress 0.06082265
## Run 395 stress 0.02399584
## ... Procrustes: rmse 0.001289616 max resid 0.003790404
## ... Similar to previous best
## Run 396 stress 0.02397855
## ... Procrustes: rmse 1.258422e-05 max resid 2.121044e-05
## ... Similar to previous best
## Run 397 stress 0.07130506
## Run 398 stress 0.06127785
## Run 399 stress 0.02399587
## ... Procrustes: rmse 0.001323855 max resid 0.00403625
## ... Similar to previous best
## Run 400 stress 0.0272166
## Run 401 stress 0.02975951
## Run 402 stress 0.0608565
## Run 403 stress 0.02721815
## Run 404 stress 0.02974512
## Run 405 stress 0.06085662
## Run 406 stress 0.03162925
## Run 407 stress 0.02975952
## Run 408 stress 0.06124246
## Run 409 stress 0.0612425
## Run 410 stress 0.0297451
## Run 411 stress 0.02974511
## Run 412 stress 0.02974511
## Run 413 stress 0.02721817
## Run 414 stress 0.03160241
## Run 415 stress 0.02721809
## Run 416 stress 0.03162923
## Run 417 stress 0.03162939
## Run 418 stress 0.02974512
## Run 419 stress 0.02975952
## Run 420 stress 0.060857
## Run 421 stress 0.02721658
## Run 422 stress 0.02975954
## Run 423 stress 0.03162198
## Run 424 stress 0.03035659
## Run 425 stress 0.02721815
## Run 426 stress 0.02721812
## Run 427 stress 0.0303594
## Run 428 stress 0.03162949
## Run 429 stress 0.0316026
## Run 430 stress 0.06085717
## Run 431 stress 0.02723753
## Run 432 stress 0.02721814
## Run 433 stress 0.03162189
## Run 434 stress 0.02397857
## ... Procrustes: rmse 3.419607e-05 max resid 6.224576e-05
## ... Similar to previous best
## Run 435 stress 0.03160265
## Run 436 stress 0.02721809
## Run 437 stress 0.03160254
## Run 438 stress 0.02721655
## Run 439 stress 0.03160242
## Run 440 stress 0.06127796
## Run 441 stress 0.06124246
## Run 442 stress 0.03162195
## Run 443 stress 0.02975951
## Run 444 stress 0.0303565
## Run 445 stress 0.0272166
## Run 446 stress 0.02974511
## Run 447 stress 0.02723753
## Run 448 stress 0.03035651
## Run 449 stress 0.03035655
## Run 450 stress 0.02974511
## Run 451 stress 0.06127772
## Run 452 stress 0.02397857
## ... Procrustes: rmse 3.806343e-05 max resid 6.706687e-05
## ... Similar to previous best
## Run 453 stress 0.03162948
## Run 454 stress 0.02975951
## Run 455 stress 0.0608227
## Run 456 stress 0.0297595
## Run 457 stress 0.03160261
## Run 458 stress 0.06127783
## Run 459 stress 0.02721656
## Run 460 stress 0.02974512
## Run 461 stress 0.02974511
## Run 462 stress 0.0297451
## Run 463 stress 0.3657376
## Run 464 stress 0.03160243
## Run 465 stress 0.02974511
## Run 466 stress 0.06134243
## Run 467 stress 0.0612385
## Run 468 stress 0.02974512
## Run 469 stress 0.03162948
## Run 470 stress 0.03162188
## Run 471 stress 0.02974512
## Run 472 stress 0.0297595
## Run 473 stress 0.02397857
## ... Procrustes: rmse 3.062213e-05 max resid 5.275771e-05
## ... Similar to previous best
## Run 474 stress 0.03035928
## Run 475 stress 0.03035652
## Run 476 stress 0.03160248
## Run 477 stress 0.0297451
## Run 478 stress 0.03160248
## Run 479 stress 0.03162942
## Run 480 stress 0.07130464
## Run 481 stress 0.02975951
## Run 482 stress 0.02974512
## Run 483 stress 0.03162194
## Run 484 stress 0.02975955
## Run 485 stress 0.03162925
## Run 486 stress 0.02399584
## ... Procrustes: rmse 0.001314301 max resid 0.003983754
## ... Similar to previous best
## Run 487 stress 0.03035649
## Run 488 stress 0.03035654
## Run 489 stress 0.031622
## Run 490 stress 0.06127772
## Run 491 stress 0.0297451
## Run 492 stress 0.02974513
## Run 493 stress 0.06123866
## Run 494 stress 0.2814089
## Run 495 stress 0.03035662
## Run 496 stress 0.06128613
## Run 497 stress 0.02397856
## ... Procrustes: rmse 1.96907e-05 max resid 3.825501e-05
## ... Similar to previous best
## Run 498 stress 0.03035936
## Run 499 stress 0.02974511
## Run 500 stress 0.02397858
## ... Procrustes: rmse 4.921419e-05 max resid 8.696662e-05
## ... Similar to previous best
## *** Best solution repeated 11 times# Ocean sites and mixed lakes
fdom_NMDS <- metaMDS(fdom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.04425405
## Run 1 stress 0.1090294
## Run 2 stress 0.1087681
## Run 3 stress 0.04486724
## Run 4 stress 0.04486723
## Run 5 stress 0.1090294
## Run 6 stress 0.04486723
## Run 7 stress 0.04425405
## ... Procrustes: rmse 7.686488e-06 max resid 1.277243e-05
## ... Similar to previous best
## Run 8 stress 0.04425405
## ... New best solution
## ... Procrustes: rmse 2.042435e-05 max resid 3.677507e-05
## ... Similar to previous best
## Run 9 stress 0.04486725
## Run 10 stress 0.04486729
## Run 11 stress 0.04486724
## Run 12 stress 0.04486724
## Run 13 stress 0.04425405
## ... Procrustes: rmse 1.614338e-05 max resid 3.111617e-05
## ... Similar to previous best
## Run 14 stress 0.04425405
## ... Procrustes: rmse 2.83826e-05 max resid 5.06022e-05
## ... Similar to previous best
## Run 15 stress 0.04486722
## Run 16 stress 0.04486723
## Run 17 stress 0.04425405
## ... Procrustes: rmse 2.45416e-05 max resid 4.351779e-05
## ... Similar to previous best
## Run 18 stress 0.04425405
## ... Procrustes: rmse 1.885688e-05 max resid 3.363988e-05
## ... Similar to previous best
## Run 19 stress 0.04425406
## ... Procrustes: rmse 4.536706e-05 max resid 8.543308e-05
## ... Similar to previous best
## Run 20 stress 0.3330007
## Run 21 stress 0.04486723
## Run 22 stress 0.04425405
## ... Procrustes: rmse 2.256112e-05 max resid 4.239838e-05
## ... Similar to previous best
## Run 23 stress 0.04486722
## Run 24 stress 0.04486723
## Run 25 stress 0.04486725
## Run 26 stress 0.04425406
## ... Procrustes: rmse 4.807735e-05 max resid 8.642364e-05
## ... Similar to previous best
## Run 27 stress 0.04425405
## ... Procrustes: rmse 1.2626e-05 max resid 2.483102e-05
## ... Similar to previous best
## Run 28 stress 0.1089043
## Run 29 stress 0.04486722
## Run 30 stress 0.1089044
## Run 31 stress 0.1089044
## Run 32 stress 0.04425405
## ... Procrustes: rmse 2.324872e-05 max resid 4.115519e-05
## ... Similar to previous best
## Run 33 stress 0.04486733
## Run 34 stress 0.04425408
## ... Procrustes: rmse 8.017843e-05 max resid 0.0001461854
## ... Similar to previous best
## Run 35 stress 0.04425405
## ... Procrustes: rmse 2.790645e-05 max resid 4.904862e-05
## ... Similar to previous best
## Run 36 stress 0.04425405
## ... Procrustes: rmse 7.477733e-06 max resid 1.448435e-05
## ... Similar to previous best
## Run 37 stress 0.04486726
## Run 38 stress 0.04425405
## ... Procrustes: rmse 2.232682e-05 max resid 3.983214e-05
## ... Similar to previous best
## Run 39 stress 0.04486725
## Run 40 stress 0.109428
## Run 41 stress 0.04425407
## ... Procrustes: rmse 1.597795e-05 max resid 2.83163e-05
## ... Similar to previous best
## Run 42 stress 0.04425405
## ... Procrustes: rmse 2.680679e-05 max resid 4.791072e-05
## ... Similar to previous best
## Run 43 stress 0.04425405
## ... Procrustes: rmse 1.982636e-05 max resid 3.818107e-05
## ... Similar to previous best
## Run 44 stress 0.1090295
## Run 45 stress 0.04425405
## ... Procrustes: rmse 2.336351e-05 max resid 4.082572e-05
## ... Similar to previous best
## Run 46 stress 0.04486724
## Run 47 stress 0.04486725
## Run 48 stress 0.04425405
## ... Procrustes: rmse 2.430143e-06 max resid 4.22709e-06
## ... Similar to previous best
## Run 49 stress 0.04486722
## Run 50 stress 0.04486723
## Run 51 stress 0.1090296
## Run 52 stress 0.04425405
## ... Procrustes: rmse 2.652099e-05 max resid 4.608373e-05
## ... Similar to previous best
## Run 53 stress 0.04486725
## Run 54 stress 0.04486724
## Run 55 stress 0.04486724
## Run 56 stress 0.04486725
## Run 57 stress 0.04486724
## Run 58 stress 0.1089043
## Run 59 stress 0.04425407
## ... Procrustes: rmse 5.399767e-05 max resid 0.0001011503
## ... Similar to previous best
## Run 60 stress 0.04425407
## ... Procrustes: rmse 6.399347e-05 max resid 0.0001193801
## ... Similar to previous best
## Run 61 stress 0.3495735
## Run 62 stress 0.04425408
## ... Procrustes: rmse 7.214262e-05 max resid 0.0001343087
## ... Similar to previous best
## Run 63 stress 0.3173308
## Run 64 stress 0.04425409
## ... Procrustes: rmse 8.903292e-05 max resid 0.0001630086
## ... Similar to previous best
## Run 65 stress 0.04425405
## ... Procrustes: rmse 1.670987e-05 max resid 3.226735e-05
## ... Similar to previous best
## Run 66 stress 0.04425408
## ... Procrustes: rmse 7.564125e-05 max resid 0.0001382204
## ... Similar to previous best
## Run 67 stress 0.04486729
## Run 68 stress 0.04425405
## ... Procrustes: rmse 1.960506e-05 max resid 3.535014e-05
## ... Similar to previous best
## Run 69 stress 0.04486729
## Run 70 stress 0.04425406
## ... Procrustes: rmse 3.224952e-05 max resid 6.123117e-05
## ... Similar to previous best
## Run 71 stress 0.04486727
## Run 72 stress 0.04425406
## ... Procrustes: rmse 4.427021e-05 max resid 8.293446e-05
## ... Similar to previous best
## Run 73 stress 0.1089044
## Run 74 stress 0.04425405
## ... Procrustes: rmse 7.565792e-06 max resid 1.430687e-05
## ... Similar to previous best
## Run 75 stress 0.04486727
## Run 76 stress 0.04486731
## Run 77 stress 0.04425405
## ... Procrustes: rmse 5.384811e-06 max resid 1.026383e-05
## ... Similar to previous best
## Run 78 stress 0.04425405
## ... Procrustes: rmse 1.208774e-05 max resid 2.238569e-05
## ... Similar to previous best
## Run 79 stress 0.04425407
## ... Procrustes: rmse 6.885178e-05 max resid 0.0001258444
## ... Similar to previous best
## Run 80 stress 0.04486722
## Run 81 stress 0.04425405
## ... Procrustes: rmse 1.063049e-05 max resid 2.078213e-05
## ... Similar to previous best
## Run 82 stress 0.04425409
## ... Procrustes: rmse 7.673199e-05 max resid 0.0001436172
## ... Similar to previous best
## Run 83 stress 0.04425405
## ... Procrustes: rmse 1.280958e-05 max resid 2.423896e-05
## ... Similar to previous best
## Run 84 stress 0.04486725
## Run 85 stress 0.04425407
## ... Procrustes: rmse 6.232021e-05 max resid 0.0001124582
## ... Similar to previous best
## Run 86 stress 0.04486724
## Run 87 stress 0.04425406
## ... Procrustes: rmse 3.772763e-05 max resid 6.806547e-05
## ... Similar to previous best
## Run 88 stress 0.04425408
## ... Procrustes: rmse 8.212144e-05 max resid 0.0001496456
## ... Similar to previous best
## Run 89 stress 0.04486726
## Run 90 stress 0.04425408
## ... Procrustes: rmse 6.624815e-05 max resid 0.0001208415
## ... Similar to previous best
## Run 91 stress 0.04486722
## Run 92 stress 0.04425406
## ... Procrustes: rmse 5.079881e-05 max resid 9.099339e-05
## ... Similar to previous best
## Run 93 stress 0.04425405
## ... Procrustes: rmse 1.19271e-05 max resid 2.195967e-05
## ... Similar to previous best
## Run 94 stress 0.04425407
## ... Procrustes: rmse 7.116315e-05 max resid 0.0001294395
## ... Similar to previous best
## Run 95 stress 0.04486731
## Run 96 stress 0.04486728
## Run 97 stress 0.1089044
## Run 98 stress 0.04486723
## Run 99 stress 0.04486722
## Run 100 stress 0.04425407
## ... Procrustes: rmse 7.218107e-05 max resid 0.0001308875
## ... Similar to previous best
## Run 101 stress 0.04425408
## ... Procrustes: rmse 7.864826e-05 max resid 0.0001433288
## ... Similar to previous best
## Run 102 stress 0.1087681
## Run 103 stress 0.04425408
## ... Procrustes: rmse 7.910117e-05 max resid 0.0001446076
## ... Similar to previous best
## Run 104 stress 0.1090296
## Run 105 stress 0.04486722
## Run 106 stress 0.1089043
## Run 107 stress 0.04486722
## Run 108 stress 0.3281287
## Run 109 stress 0.04486723
## Run 110 stress 0.04425405
## ... Procrustes: rmse 2.759632e-05 max resid 4.944841e-05
## ... Similar to previous best
## Run 111 stress 0.04486725
## Run 112 stress 0.1087681
## Run 113 stress 0.04425405
## ... Procrustes: rmse 1.311352e-05 max resid 2.367974e-05
## ... Similar to previous best
## Run 114 stress 0.3495549
## Run 115 stress 0.04425405
## ... Procrustes: rmse 3.076249e-05 max resid 5.415698e-05
## ... Similar to previous best
## Run 116 stress 0.04425405
## ... Procrustes: rmse 2.059122e-05 max resid 3.695658e-05
## ... Similar to previous best
## Run 117 stress 0.04425405
## ... Procrustes: rmse 1.389734e-05 max resid 2.53336e-05
## ... Similar to previous best
## Run 118 stress 0.04425405
## ... Procrustes: rmse 1.636368e-06 max resid 3.753133e-06
## ... Similar to previous best
## Run 119 stress 0.04425405
## ... Procrustes: rmse 2.468653e-05 max resid 4.390238e-05
## ... Similar to previous best
## Run 120 stress 0.1090295
## Run 121 stress 0.1089045
## Run 122 stress 0.1089045
## Run 123 stress 0.04425405
## ... Procrustes: rmse 2.152153e-05 max resid 3.759499e-05
## ... Similar to previous best
## Run 124 stress 0.3578482
## Run 125 stress 0.04425405
## ... Procrustes: rmse 3.06726e-05 max resid 5.451939e-05
## ... Similar to previous best
## Run 126 stress 0.04486722
## Run 127 stress 0.04425405
## ... Procrustes: rmse 3.172136e-05 max resid 5.651652e-05
## ... Similar to previous best
## Run 128 stress 0.04425405
## ... Procrustes: rmse 3.018856e-05 max resid 5.409683e-05
## ... Similar to previous best
## Run 129 stress 0.04425407
## ... Procrustes: rmse 1.575147e-05 max resid 3.760628e-05
## ... Similar to previous best
## Run 130 stress 0.04425408
## ... Procrustes: rmse 8.442955e-05 max resid 0.0001541369
## ... Similar to previous best
## Run 131 stress 0.04425407
## ... Procrustes: rmse 6.356742e-05 max resid 0.0001130116
## ... Similar to previous best
## Run 132 stress 0.04425405
## ... Procrustes: rmse 2.480463e-05 max resid 4.694877e-05
## ... Similar to previous best
## Run 133 stress 0.04486728
## Run 134 stress 0.04486722
## Run 135 stress 0.04425407
## ... Procrustes: rmse 5.901993e-05 max resid 0.0001098037
## ... Similar to previous best
## Run 136 stress 0.04486728
## Run 137 stress 0.04486722
## Run 138 stress 0.04425407
## ... Procrustes: rmse 5.077625e-05 max resid 9.563687e-05
## ... Similar to previous best
## Run 139 stress 0.108768
## Run 140 stress 0.04425407
## ... Procrustes: rmse 5.449112e-05 max resid 0.0001024574
## ... Similar to previous best
## Run 141 stress 0.04425408
## ... Procrustes: rmse 7.577306e-05 max resid 0.000138719
## ... Similar to previous best
## Run 142 stress 0.1089043
## Run 143 stress 0.04486724
## Run 144 stress 0.04425409
## ... Procrustes: rmse 8.481821e-05 max resid 0.0001555829
## ... Similar to previous best
## Run 145 stress 0.04486722
## Run 146 stress 0.04425405
## ... Procrustes: rmse 1.432796e-05 max resid 2.609993e-05
## ... Similar to previous best
## Run 147 stress 0.0448673
## Run 148 stress 0.1089043
## Run 149 stress 0.04486727
## Run 150 stress 0.04425407
## ... Procrustes: rmse 6.247845e-05 max resid 0.000114221
## ... Similar to previous best
## Run 151 stress 0.04425405
## ... Procrustes: rmse 5.200063e-06 max resid 1.079288e-05
## ... Similar to previous best
## Run 152 stress 0.04425405
## ... Procrustes: rmse 2.420994e-05 max resid 4.540501e-05
## ... Similar to previous best
## Run 153 stress 0.04486727
## Run 154 stress 0.04486723
## Run 155 stress 0.04486727
## Run 156 stress 0.04425406
## ... Procrustes: rmse 3.655644e-05 max resid 6.897295e-05
## ... Similar to previous best
## Run 157 stress 0.04486722
## Run 158 stress 0.04425405
## ... Procrustes: rmse 2.950101e-05 max resid 5.297826e-05
## ... Similar to previous best
## Run 159 stress 0.04425406
## ... Procrustes: rmse 5.395915e-05 max resid 9.825667e-05
## ... Similar to previous best
## Run 160 stress 0.04425406
## ... Procrustes: rmse 4.949335e-05 max resid 9.286297e-05
## ... Similar to previous best
## Run 161 stress 0.04425405
## ... Procrustes: rmse 1.193351e-05 max resid 2.219645e-05
## ... Similar to previous best
## Run 162 stress 0.04425405
## ... Procrustes: rmse 2.490659e-05 max resid 4.708577e-05
## ... Similar to previous best
## Run 163 stress 0.04425405
## ... Procrustes: rmse 1.026618e-05 max resid 1.985986e-05
## ... Similar to previous best
## Run 164 stress 0.04425406
## ... Procrustes: rmse 5.276479e-05 max resid 9.579667e-05
## ... Similar to previous best
## Run 165 stress 0.04425407
## ... Procrustes: rmse 7.229725e-05 max resid 0.0001321399
## ... Similar to previous best
## Run 166 stress 0.04425405
## ... Procrustes: rmse 2.615107e-05 max resid 4.657303e-05
## ... Similar to previous best
## Run 167 stress 0.04486723
## Run 168 stress 0.1089043
## Run 169 stress 0.1089043
## Run 170 stress 0.04425405
## ... Procrustes: rmse 1.61389e-05 max resid 2.698516e-05
## ... Similar to previous best
## Run 171 stress 0.04425406
## ... Procrustes: rmse 5.169388e-05 max resid 9.396035e-05
## ... Similar to previous best
## Run 172 stress 0.04486722
## Run 173 stress 0.3578488
## Run 174 stress 0.04425405
## ... Procrustes: rmse 3.023499e-05 max resid 5.435119e-05
## ... Similar to previous best
## Run 175 stress 0.04486729
## Run 176 stress 0.04425407
## ... Procrustes: rmse 6.229117e-05 max resid 0.0001113658
## ... Similar to previous best
## Run 177 stress 0.04425405
## ... Procrustes: rmse 3.711298e-05 max resid 6.615932e-05
## ... Similar to previous best
## Run 178 stress 0.04425408
## ... Procrustes: rmse 7.468719e-05 max resid 0.0001355585
## ... Similar to previous best
## Run 179 stress 0.1087682
## Run 180 stress 0.04425405
## ... Procrustes: rmse 3.132912e-05 max resid 5.618914e-05
## ... Similar to previous best
## Run 181 stress 0.04486725
## Run 182 stress 0.04425405
## ... Procrustes: rmse 2.09726e-05 max resid 3.950006e-05
## ... Similar to previous best
## Run 183 stress 0.04486727
## Run 184 stress 0.04425407
## ... Procrustes: rmse 4.129882e-05 max resid 7.74797e-05
## ... Similar to previous best
## Run 185 stress 0.04486722
## Run 186 stress 0.04425405
## ... New best solution
## ... Procrustes: rmse 7.855647e-06 max resid 1.498364e-05
## ... Similar to previous best
## Run 187 stress 0.04486724
## Run 188 stress 0.1090294
## Run 189 stress 0.04425407
## ... Procrustes: rmse 5.906104e-05 max resid 0.0001070358
## ... Similar to previous best
## Run 190 stress 0.04425405
## ... Procrustes: rmse 7.729967e-06 max resid 1.563929e-05
## ... Similar to previous best
## Run 191 stress 0.04486724
## Run 192 stress 0.04486722
## Run 193 stress 0.04425405
## ... Procrustes: rmse 4.309502e-06 max resid 8.071979e-06
## ... Similar to previous best
## Run 194 stress 0.04425406
## ... Procrustes: rmse 3.286234e-05 max resid 5.939659e-05
## ... Similar to previous best
## Run 195 stress 0.04425407
## ... Procrustes: rmse 6.090215e-05 max resid 0.0001122659
## ... Similar to previous best
## Run 196 stress 0.04425405
## ... Procrustes: rmse 1.241647e-05 max resid 2.28797e-05
## ... Similar to previous best
## Run 197 stress 0.04486724
## Run 198 stress 0.04486722
## Run 199 stress 0.04425405
## ... Procrustes: rmse 1.020432e-05 max resid 1.912795e-05
## ... Similar to previous best
## Run 200 stress 0.04425405
## ... Procrustes: rmse 1.729547e-05 max resid 3.189697e-05
## ... Similar to previous best
## Run 201 stress 0.1087681
## Run 202 stress 0.04425408
## ... Procrustes: rmse 7.451595e-05 max resid 0.0001374858
## ... Similar to previous best
## Run 203 stress 0.04486726
## Run 204 stress 0.04425405
## ... Procrustes: rmse 2.774184e-05 max resid 5.07694e-05
## ... Similar to previous best
## Run 205 stress 0.04486722
## Run 206 stress 0.04425406
## ... Procrustes: rmse 4.98421e-05 max resid 9.16558e-05
## ... Similar to previous best
## Run 207 stress 0.04425405
## ... Procrustes: rmse 1.332872e-05 max resid 2.362427e-05
## ... Similar to previous best
## Run 208 stress 0.04425406
## ... Procrustes: rmse 4.935291e-05 max resid 9.146535e-05
## ... Similar to previous best
## Run 209 stress 0.04486731
## Run 210 stress 0.04486723
## Run 211 stress 0.04425405
## ... Procrustes: rmse 3.673013e-05 max resid 6.793957e-05
## ... Similar to previous best
## Run 212 stress 0.04486728
## Run 213 stress 0.04486722
## Run 214 stress 0.3493334
## Run 215 stress 0.04486724
## Run 216 stress 0.04425405
## ... Procrustes: rmse 1.0756e-05 max resid 1.999748e-05
## ... Similar to previous best
## Run 217 stress 0.04486726
## Run 218 stress 0.04425405
## ... Procrustes: rmse 2.825858e-05 max resid 5.249805e-05
## ... Similar to previous best
## Run 219 stress 0.04486723
## Run 220 stress 0.04425407
## ... Procrustes: rmse 6.430546e-05 max resid 0.0001182361
## ... Similar to previous best
## Run 221 stress 0.04425406
## ... Procrustes: rmse 4.18139e-05 max resid 7.526531e-05
## ... Similar to previous best
## Run 222 stress 0.04425405
## ... Procrustes: rmse 1.417682e-05 max resid 2.442408e-05
## ... Similar to previous best
## Run 223 stress 0.1089043
## Run 224 stress 0.04486726
## Run 225 stress 0.3578487
## Run 226 stress 0.04486723
## Run 227 stress 0.04486723
## Run 228 stress 0.04486723
## Run 229 stress 0.04486726
## Run 230 stress 0.04425405
## ... Procrustes: rmse 1.13529e-05 max resid 2.081415e-05
## ... Similar to previous best
## Run 231 stress 0.04425405
## ... Procrustes: rmse 3.366722e-05 max resid 6.228006e-05
## ... Similar to previous best
## Run 232 stress 0.04425405
## ... Procrustes: rmse 4.359077e-05 max resid 8.044622e-05
## ... Similar to previous best
## Run 233 stress 0.1090296
## Run 234 stress 0.04425405
## ... Procrustes: rmse 1.303086e-05 max resid 2.285051e-05
## ... Similar to previous best
## Run 235 stress 0.04425405
## ... Procrustes: rmse 1.412696e-05 max resid 2.571322e-05
## ... Similar to previous best
## Run 236 stress 0.04425407
## ... Procrustes: rmse 5.094734e-05 max resid 8.872342e-05
## ... Similar to previous best
## Run 237 stress 0.04425408
## ... Procrustes: rmse 6.610107e-05 max resid 0.0001189368
## ... Similar to previous best
## Run 238 stress 0.04425405
## ... Procrustes: rmse 9.451483e-06 max resid 1.731827e-05
## ... Similar to previous best
## Run 239 stress 0.04486722
## Run 240 stress 0.04486723
## Run 241 stress 0.04486726
## Run 242 stress 0.04486722
## Run 243 stress 0.04486724
## Run 244 stress 0.04486723
## Run 245 stress 0.04425405
## ... Procrustes: rmse 7.0899e-06 max resid 1.307967e-05
## ... Similar to previous best
## Run 246 stress 0.04425407
## ... Procrustes: rmse 6.287958e-05 max resid 0.0001162963
## ... Similar to previous best
## Run 247 stress 0.04486726
## Run 248 stress 0.04425407
## ... Procrustes: rmse 5.818568e-05 max resid 0.0001067966
## ... Similar to previous best
## Run 249 stress 0.04486722
## Run 250 stress 0.3578487
## Run 251 stress 0.108768
## Run 252 stress 0.04425407
## ... Procrustes: rmse 6.627174e-05 max resid 0.0001217964
## ... Similar to previous best
## Run 253 stress 0.04425408
## ... Procrustes: rmse 6.753225e-05 max resid 0.0001210552
## ... Similar to previous best
## Run 254 stress 0.04425405
## ... Procrustes: rmse 1.046697e-05 max resid 1.916492e-05
## ... Similar to previous best
## Run 255 stress 0.04486723
## Run 256 stress 0.04486728
## Run 257 stress 0.04425406
## ... Procrustes: rmse 5.542426e-05 max resid 0.0001023804
## ... Similar to previous best
## Run 258 stress 0.04425405
## ... Procrustes: rmse 3.437589e-05 max resid 6.379752e-05
## ... Similar to previous best
## Run 259 stress 0.04425408
## ... Procrustes: rmse 7.129093e-05 max resid 0.000129758
## ... Similar to previous best
## Run 260 stress 0.04425405
## ... Procrustes: rmse 1.432476e-05 max resid 2.604735e-05
## ... Similar to previous best
## Run 261 stress 0.04425405
## ... Procrustes: rmse 1.042287e-05 max resid 1.90572e-05
## ... Similar to previous best
## Run 262 stress 0.04486722
## Run 263 stress 0.04425406
## ... Procrustes: rmse 4.389611e-05 max resid 8.03288e-05
## ... Similar to previous best
## Run 264 stress 0.04425406
## ... Procrustes: rmse 5.171538e-05 max resid 9.542524e-05
## ... Similar to previous best
## Run 265 stress 0.04486728
## Run 266 stress 0.04425406
## ... Procrustes: rmse 4.643564e-05 max resid 8.419538e-05
## ... Similar to previous best
## Run 267 stress 0.04425408
## ... Procrustes: rmse 7.43606e-05 max resid 0.0001378438
## ... Similar to previous best
## Run 268 stress 0.04486725
## Run 269 stress 0.04425406
## ... Procrustes: rmse 1.002902e-05 max resid 2.267663e-05
## ... Similar to previous best
## Run 270 stress 0.04425405
## ... Procrustes: rmse 7.098068e-06 max resid 1.319628e-05
## ... Similar to previous best
## Run 271 stress 0.04425405
## ... Procrustes: rmse 1.329539e-05 max resid 2.413082e-05
## ... Similar to previous best
## Run 272 stress 0.04486723
## Run 273 stress 0.04486722
## Run 274 stress 0.108768
## Run 275 stress 0.04486724
## Run 276 stress 0.04425405
## ... Procrustes: rmse 1.058589e-06 max resid 1.87197e-06
## ... Similar to previous best
## Run 277 stress 0.04486726
## Run 278 stress 0.04486727
## Run 279 stress 0.1090295
## Run 280 stress 0.1087681
## Run 281 stress 0.04486722
## Run 282 stress 0.04486724
## Run 283 stress 0.1089046
## Run 284 stress 0.04425405
## ... Procrustes: rmse 4.142498e-06 max resid 7.683514e-06
## ... Similar to previous best
## Run 285 stress 0.04425405
## ... Procrustes: rmse 1.113497e-05 max resid 2.044116e-05
## ... Similar to previous best
## Run 286 stress 0.04425408
## ... Procrustes: rmse 7.376089e-05 max resid 0.0001366727
## ... Similar to previous best
## Run 287 stress 0.04425405
## ... Procrustes: rmse 2.81114e-05 max resid 5.197356e-05
## ... Similar to previous best
## Run 288 stress 0.04425406
## ... Procrustes: rmse 4.348812e-05 max resid 8.062285e-05
## ... Similar to previous best
## Run 289 stress 0.0448673
## Run 290 stress 0.04425405
## ... Procrustes: rmse 1.630614e-05 max resid 3.028082e-05
## ... Similar to previous best
## Run 291 stress 0.1090294
## Run 292 stress 0.04425406
## ... Procrustes: rmse 1.328448e-05 max resid 3.105853e-05
## ... Similar to previous best
## Run 293 stress 0.04425405
## ... Procrustes: rmse 2.569541e-05 max resid 4.691181e-05
## ... Similar to previous best
## Run 294 stress 0.04486725
## Run 295 stress 0.04486724
## Run 296 stress 0.04486726
## Run 297 stress 0.04425405
## ... Procrustes: rmse 4.45715e-06 max resid 8.307965e-06
## ... Similar to previous best
## Run 298 stress 0.04425409
## ... Procrustes: rmse 7.823123e-05 max resid 0.0001434657
## ... Similar to previous best
## Run 299 stress 0.04425405
## ... Procrustes: rmse 1.468117e-05 max resid 2.759032e-05
## ... Similar to previous best
## Run 300 stress 0.04486723
## Run 301 stress 0.04486726
## Run 302 stress 0.04486726
## Run 303 stress 0.04486723
## Run 304 stress 0.04486722
## Run 305 stress 0.04486722
## Run 306 stress 0.04486722
## Run 307 stress 0.04486727
## Run 308 stress 0.04425405
## ... Procrustes: rmse 3.300207e-05 max resid 6.123289e-05
## ... Similar to previous best
## Run 309 stress 0.04425405
## ... Procrustes: rmse 1.120366e-05 max resid 2.047557e-05
## ... Similar to previous best
## Run 310 stress 0.04486724
## Run 311 stress 0.04486725
## Run 312 stress 0.108768
## Run 313 stress 0.04425405
## ... Procrustes: rmse 6.92539e-06 max resid 1.291106e-05
## ... Similar to previous best
## Run 314 stress 0.04425405
## ... Procrustes: rmse 2.650509e-05 max resid 4.913884e-05
## ... Similar to previous best
## Run 315 stress 0.04425405
## ... New best solution
## ... Procrustes: rmse 1.108195e-06 max resid 1.884632e-06
## ... Similar to previous best
## Run 316 stress 0.04425406
## ... Procrustes: rmse 4.584346e-05 max resid 8.444454e-05
## ... Similar to previous best
## Run 317 stress 0.04425405
## ... Procrustes: rmse 1.455097e-06 max resid 2.531706e-06
## ... Similar to previous best
## Run 318 stress 0.04486725
## Run 319 stress 0.04425405
## ... Procrustes: rmse 2.003492e-05 max resid 3.679811e-05
## ... Similar to previous best
## Run 320 stress 0.04425405
## ... Procrustes: rmse 3.16423e-05 max resid 5.871174e-05
## ... Similar to previous best
## Run 321 stress 0.04425405
## ... Procrustes: rmse 9.451985e-06 max resid 1.772413e-05
## ... Similar to previous best
## Run 322 stress 0.04425405
## ... Procrustes: rmse 8.231102e-06 max resid 1.437681e-05
## ... Similar to previous best
## Run 323 stress 0.04425405
## ... Procrustes: rmse 2.224753e-05 max resid 4.143915e-05
## ... Similar to previous best
## Run 324 stress 0.1089043
## Run 325 stress 0.1094279
## Run 326 stress 0.0448673
## Run 327 stress 0.04486722
## Run 328 stress 0.04425405
## ... Procrustes: rmse 5.20652e-06 max resid 9.158349e-06
## ... Similar to previous best
## Run 329 stress 0.04486722
## Run 330 stress 0.04425406
## ... Procrustes: rmse 3.282047e-05 max resid 6.012123e-05
## ... Similar to previous best
## Run 331 stress 0.04425405
## ... Procrustes: rmse 3.667183e-05 max resid 6.72301e-05
## ... Similar to previous best
## Run 332 stress 0.04486723
## Run 333 stress 0.04425405
## ... Procrustes: rmse 2.300921e-05 max resid 4.084365e-05
## ... Similar to previous best
## Run 334 stress 0.04425405
## ... Procrustes: rmse 8.103749e-06 max resid 1.456739e-05
## ... Similar to previous best
## Run 335 stress 0.04425406
## ... Procrustes: rmse 5.476356e-05 max resid 0.0001015981
## ... Similar to previous best
## Run 336 stress 0.04486724
## Run 337 stress 0.04425408
## ... Procrustes: rmse 7.72881e-05 max resid 0.0001419742
## ... Similar to previous best
## Run 338 stress 0.04425405
## ... Procrustes: rmse 2.802642e-05 max resid 5.15634e-05
## ... Similar to previous best
## Run 339 stress 0.04425405
## ... Procrustes: rmse 2.658461e-05 max resid 4.882594e-05
## ... Similar to previous best
## Run 340 stress 0.04486722
## Run 341 stress 0.04425405
## ... Procrustes: rmse 6.50295e-06 max resid 9.664837e-06
## ... Similar to previous best
## Run 342 stress 0.04486722
## Run 343 stress 0.04425405
## ... Procrustes: rmse 6.25548e-06 max resid 1.205429e-05
## ... Similar to previous best
## Run 344 stress 0.04425405
## ... Procrustes: rmse 1.175315e-05 max resid 2.126082e-05
## ... Similar to previous best
## Run 345 stress 0.04486728
## Run 346 stress 0.04486726
## Run 347 stress 0.04486723
## Run 348 stress 0.04425406
## ... Procrustes: rmse 5.057334e-05 max resid 9.332783e-05
## ... Similar to previous best
## Run 349 stress 0.04486722
## Run 350 stress 0.04425406
## ... Procrustes: rmse 3.01027e-05 max resid 5.484181e-05
## ... Similar to previous best
## Run 351 stress 0.1087681
## Run 352 stress 0.04425407
## ... Procrustes: rmse 6.171895e-05 max resid 0.0001141029
## ... Similar to previous best
## Run 353 stress 0.04486726
## Run 354 stress 0.04425405
## ... Procrustes: rmse 2.27576e-05 max resid 4.159924e-05
## ... Similar to previous best
## Run 355 stress 0.04486726
## Run 356 stress 0.04486722
## Run 357 stress 0.04425405
## ... Procrustes: rmse 1.951796e-06 max resid 4.212895e-06
## ... Similar to previous best
## Run 358 stress 0.1087681
## Run 359 stress 0.04486728
## Run 360 stress 0.04425405
## ... Procrustes: rmse 8.525864e-06 max resid 1.501581e-05
## ... Similar to previous best
## Run 361 stress 0.04486723
## Run 362 stress 0.04425405
## ... Procrustes: rmse 1.479017e-05 max resid 2.648529e-05
## ... Similar to previous best
## Run 363 stress 0.04486727
## Run 364 stress 0.1087681
## Run 365 stress 0.04486722
## Run 366 stress 0.04486725
## Run 367 stress 0.04425405
## ... Procrustes: rmse 1.592472e-05 max resid 2.751435e-05
## ... Similar to previous best
## Run 368 stress 0.04425407
## ... Procrustes: rmse 5.513759e-05 max resid 9.95941e-05
## ... Similar to previous best
## Run 369 stress 0.04486728
## Run 370 stress 0.04486723
## Run 371 stress 0.04425405
## ... Procrustes: rmse 1.378389e-05 max resid 2.566322e-05
## ... Similar to previous best
## Run 372 stress 0.04425407
## ... Procrustes: rmse 5.905925e-05 max resid 0.0001090885
## ... Similar to previous best
## Run 373 stress 0.04425405
## ... Procrustes: rmse 9.662824e-06 max resid 1.758446e-05
## ... Similar to previous best
## Run 374 stress 0.04425406
## ... Procrustes: rmse 3.440358e-05 max resid 6.37967e-05
## ... Similar to previous best
## Run 375 stress 0.04425405
## ... Procrustes: rmse 3.188764e-05 max resid 5.874134e-05
## ... Similar to previous best
## Run 376 stress 0.04486728
## Run 377 stress 0.04486722
## Run 378 stress 0.04486722
## Run 379 stress 0.04486725
## Run 380 stress 0.04425407
## ... Procrustes: rmse 6.158999e-05 max resid 0.0001139459
## ... Similar to previous best
## Run 381 stress 0.1090295
## Run 382 stress 0.04425405
## ... Procrustes: rmse 1.114303e-05 max resid 1.964132e-05
## ... Similar to previous best
## Run 383 stress 0.04486724
## Run 384 stress 0.04425405
## ... Procrustes: rmse 1.090189e-05 max resid 1.974277e-05
## ... Similar to previous best
## Run 385 stress 0.0442541
## ... Procrustes: rmse 7.340369e-05 max resid 0.0001305362
## ... Similar to previous best
## Run 386 stress 0.04425405
## ... Procrustes: rmse 2.712362e-05 max resid 4.963198e-05
## ... Similar to previous best
## Run 387 stress 0.1090294
## Run 388 stress 0.04425405
## ... Procrustes: rmse 1.785334e-05 max resid 3.266745e-05
## ... Similar to previous best
## Run 389 stress 0.04486727
## Run 390 stress 0.04425405
## ... Procrustes: rmse 2.167211e-05 max resid 3.943231e-05
## ... Similar to previous best
## Run 391 stress 0.0448673
## Run 392 stress 0.04425405
## ... Procrustes: rmse 7.169784e-06 max resid 1.276963e-05
## ... Similar to previous best
## Run 393 stress 0.04425408
## ... Procrustes: rmse 7.606079e-05 max resid 0.0001402928
## ... Similar to previous best
## Run 394 stress 0.04486722
## Run 395 stress 0.04425406
## ... Procrustes: rmse 4.385558e-05 max resid 8.081399e-05
## ... Similar to previous best
## Run 396 stress 0.04425405
## ... Procrustes: rmse 1.274819e-05 max resid 2.199528e-05
## ... Similar to previous best
## Run 397 stress 0.04486722
## Run 398 stress 0.04486724
## Run 399 stress 0.04486722
## Run 400 stress 0.04425408
## ... Procrustes: rmse 6.806202e-05 max resid 0.0001240466
## ... Similar to previous best
## Run 401 stress 0.04486728
## Run 402 stress 0.04486727
## Run 403 stress 0.04425407
## ... Procrustes: rmse 6.871861e-05 max resid 0.0001267942
## ... Similar to previous best
## Run 404 stress 0.04425405
## ... Procrustes: rmse 1.138462e-05 max resid 2.122005e-05
## ... Similar to previous best
## Run 405 stress 0.04425405
## ... Procrustes: rmse 1.100223e-05 max resid 1.998951e-05
## ... Similar to previous best
## Run 406 stress 0.04425406
## ... Procrustes: rmse 4.492808e-05 max resid 8.230376e-05
## ... Similar to previous best
## Run 407 stress 0.04486725
## Run 408 stress 0.04425406
## ... Procrustes: rmse 5.025908e-05 max resid 9.196266e-05
## ... Similar to previous best
## Run 409 stress 0.1089043
## Run 410 stress 0.04425405
## ... Procrustes: rmse 7.264426e-06 max resid 1.266534e-05
## ... Similar to previous best
## Run 411 stress 0.0442541
## ... Procrustes: rmse 4.278099e-05 max resid 7.927824e-05
## ... Similar to previous best
## Run 412 stress 0.04425405
## ... Procrustes: rmse 1.20951e-05 max resid 2.133336e-05
## ... Similar to previous best
## Run 413 stress 0.04425405
## ... Procrustes: rmse 2.721503e-05 max resid 4.96612e-05
## ... Similar to previous best
## Run 414 stress 0.1090295
## Run 415 stress 0.04425407
## ... Procrustes: rmse 6.020679e-05 max resid 0.0001110118
## ... Similar to previous best
## Run 416 stress 0.04486722
## Run 417 stress 0.04425405
## ... Procrustes: rmse 1.831585e-05 max resid 3.408367e-05
## ... Similar to previous best
## Run 418 stress 0.04425405
## ... Procrustes: rmse 1.869119e-05 max resid 3.475156e-05
## ... Similar to previous best
## Run 419 stress 0.04425405
## ... Procrustes: rmse 2.506436e-05 max resid 4.529826e-05
## ... Similar to previous best
## Run 420 stress 0.04486726
## Run 421 stress 0.04425406
## ... Procrustes: rmse 4.104556e-05 max resid 7.493166e-05
## ... Similar to previous best
## Run 422 stress 0.04486724
## Run 423 stress 0.04425407
## ... Procrustes: rmse 5.941812e-05 max resid 0.0001098186
## ... Similar to previous best
## Run 424 stress 0.04425407
## ... Procrustes: rmse 6.588204e-05 max resid 0.0001216024
## ... Similar to previous best
## Run 425 stress 0.04425409
## ... Procrustes: rmse 7.614492e-05 max resid 0.000137046
## ... Similar to previous best
## Run 426 stress 0.04486728
## Run 427 stress 0.04425405
## ... Procrustes: rmse 2.028642e-05 max resid 3.708886e-05
## ... Similar to previous best
## Run 428 stress 0.04486724
## Run 429 stress 0.04425405
## ... Procrustes: rmse 1.051327e-05 max resid 2.300004e-05
## ... Similar to previous best
## Run 430 stress 0.04425409
## ... Procrustes: rmse 7.447363e-05 max resid 0.0001379781
## ... Similar to previous best
## Run 431 stress 0.04486725
## Run 432 stress 0.04425405
## ... Procrustes: rmse 3.295903e-05 max resid 6.036067e-05
## ... Similar to previous best
## Run 433 stress 0.04425405
## ... Procrustes: rmse 7.589185e-06 max resid 1.423796e-05
## ... Similar to previous best
## Run 434 stress 0.04486723
## Run 435 stress 0.108768
## Run 436 stress 0.04486729
## Run 437 stress 0.04486723
## Run 438 stress 0.04425405
## ... Procrustes: rmse 1.931342e-05 max resid 3.519204e-05
## ... Similar to previous best
## Run 439 stress 0.04486725
## Run 440 stress 0.04425406
## ... Procrustes: rmse 4.710605e-05 max resid 8.669734e-05
## ... Similar to previous best
## Run 441 stress 0.04425405
## ... Procrustes: rmse 1.92949e-05 max resid 3.533044e-05
## ... Similar to previous best
## Run 442 stress 0.04425405
## ... Procrustes: rmse 2.560222e-05 max resid 4.74106e-05
## ... Similar to previous best
## Run 443 stress 0.04425405
## ... Procrustes: rmse 1.441642e-05 max resid 2.648463e-05
## ... Similar to previous best
## Run 444 stress 0.04425405
## ... Procrustes: rmse 1.949975e-05 max resid 3.567024e-05
## ... Similar to previous best
## Run 445 stress 0.04425405
## ... Procrustes: rmse 3.35774e-05 max resid 6.167745e-05
## ... Similar to previous best
## Run 446 stress 0.04425405
## ... Procrustes: rmse 3.668143e-05 max resid 6.799017e-05
## ... Similar to previous best
## Run 447 stress 0.04486722
## Run 448 stress 0.04425405
## ... Procrustes: rmse 1.479877e-05 max resid 2.710564e-05
## ... Similar to previous best
## Run 449 stress 0.04425405
## ... Procrustes: rmse 6.411536e-06 max resid 1.466333e-05
## ... Similar to previous best
## Run 450 stress 0.04486725
## Run 451 stress 0.04486724
## Run 452 stress 0.04425405
## ... Procrustes: rmse 8.891506e-06 max resid 1.551537e-05
## ... Similar to previous best
## Run 453 stress 0.1087681
## Run 454 stress 0.04486725
## Run 455 stress 0.04486723
## Run 456 stress 0.04425405
## ... Procrustes: rmse 2.910872e-05 max resid 5.334613e-05
## ... Similar to previous best
## Run 457 stress 0.04425405
## ... Procrustes: rmse 1.991264e-05 max resid 3.652436e-05
## ... Similar to previous best
## Run 458 stress 0.04425407
## ... Procrustes: rmse 6.46196e-05 max resid 0.0001194108
## ... Similar to previous best
## Run 459 stress 0.1089043
## Run 460 stress 0.04425406
## ... Procrustes: rmse 1.750455e-05 max resid 3.46383e-05
## ... Similar to previous best
## Run 461 stress 0.04486722
## Run 462 stress 0.1087679
## Run 463 stress 0.04486722
## Run 464 stress 0.04486723
## Run 465 stress 0.04486724
## Run 466 stress 0.04425405
## ... Procrustes: rmse 7.930491e-06 max resid 1.444665e-05
## ... Similar to previous best
## Run 467 stress 0.04486731
## Run 468 stress 0.04425406
## ... Procrustes: rmse 4.40078e-05 max resid 7.800568e-05
## ... Similar to previous best
## Run 469 stress 0.04425405
## ... Procrustes: rmse 1.638843e-05 max resid 3.115449e-05
## ... Similar to previous best
## Run 470 stress 0.04486728
## Run 471 stress 0.04425405
## ... Procrustes: rmse 7.031943e-06 max resid 1.195914e-05
## ... Similar to previous best
## Run 472 stress 0.04486722
## Run 473 stress 0.04486727
## Run 474 stress 0.04486723
## Run 475 stress 0.04486723
## Run 476 stress 0.04425409
## ... Procrustes: rmse 9.102018e-05 max resid 0.0001686218
## ... Similar to previous best
## Run 477 stress 0.04486726
## Run 478 stress 0.04425405
## ... Procrustes: rmse 3.200494e-05 max resid 5.898352e-05
## ... Similar to previous best
## Run 479 stress 0.332865
## Run 480 stress 0.04425405
## ... Procrustes: rmse 1.889239e-05 max resid 3.502958e-05
## ... Similar to previous best
## Run 481 stress 0.04425405
## ... Procrustes: rmse 1.9837e-05 max resid 3.636325e-05
## ... Similar to previous best
## Run 482 stress 0.04425405
## ... Procrustes: rmse 2.916882e-05 max resid 5.361598e-05
## ... Similar to previous best
## Run 483 stress 0.04425405
## ... Procrustes: rmse 3.166388e-05 max resid 5.694425e-05
## ... Similar to previous best
## Run 484 stress 0.04486724
## Run 485 stress 0.04425406
## ... Procrustes: rmse 4.236751e-05 max resid 7.86292e-05
## ... Similar to previous best
## Run 486 stress 0.04486724
## Run 487 stress 0.04425405
## ... Procrustes: rmse 1.433353e-05 max resid 2.581299e-05
## ... Similar to previous best
## Run 488 stress 0.04486723
## Run 489 stress 0.04486723
## Run 490 stress 0.04486724
## Run 491 stress 0.04425406
## ... Procrustes: rmse 5.162235e-05 max resid 9.492545e-05
## ... Similar to previous best
## Run 492 stress 0.04425405
## ... Procrustes: rmse 2.044615e-05 max resid 3.810877e-05
## ... Similar to previous best
## Run 493 stress 0.04425405
## ... Procrustes: rmse 2.48735e-05 max resid 4.570217e-05
## ... Similar to previous best
## Run 494 stress 0.04425405
## ... Procrustes: rmse 2.899458e-05 max resid 5.326569e-05
## ... Similar to previous best
## Run 495 stress 0.04486725
## Run 496 stress 0.04486724
## Run 497 stress 0.04425405
## ... Procrustes: rmse 2.477278e-05 max resid 4.579775e-05
## ... Similar to previous best
## Run 498 stress 0.04486722
## Run 499 stress 0.04425405
## ... Procrustes: rmse 1.918042e-05 max resid 3.503316e-05
## ... Similar to previous best
## Run 500 stress 0.04425405
## ... Procrustes: rmse 1.670288e-05 max resid 3.064202e-05
## ... Similar to previous best
## *** Best solution repeated 102 times# Stratified lakes and ocean sites
fdso_NMDS <- metaMDS(fdso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.04040732
## Run 1 stress 0.0475527
## Run 2 stress 0.04781521
## Run 3 stress 0.04781521
## Run 4 stress 0.04755258
## Run 5 stress 0.2811298
## Run 6 stress 0.04755253
## Run 7 stress 0.04870928
## Run 8 stress 0.04870928
## Run 9 stress 0.04040732
## ... Procrustes: rmse 2.559105e-05 max resid 5.236395e-05
## ... Similar to previous best
## Run 10 stress 0.04781524
## Run 11 stress 0.04870929
## Run 12 stress 0.04472623
## Run 13 stress 0.04870931
## Run 14 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 8.621248e-06 max resid 1.75937e-05
## ... Similar to previous best
## Run 15 stress 0.04040732
## ... Procrustes: rmse 6.347371e-06 max resid 1.513611e-05
## ... Similar to previous best
## Run 16 stress 0.04781521
## Run 17 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 4.156234e-06 max resid 6.908181e-06
## ... Similar to previous best
## Run 18 stress 0.04755254
## Run 19 stress 0.05017318
## Run 20 stress 0.04870928
## Run 21 stress 0.04870931
## Run 22 stress 0.04781521
## Run 23 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 6.725894e-06 max resid 1.385041e-05
## ... Similar to previous best
## Run 24 stress 0.04662836
## Run 25 stress 0.04040733
## ... Procrustes: rmse 3.851494e-05 max resid 7.186952e-05
## ... Similar to previous best
## Run 26 stress 0.04870931
## Run 27 stress 0.04871639
## Run 28 stress 0.04755259
## Run 29 stress 0.04471762
## Run 30 stress 0.04781521
## Run 31 stress 0.04662839
## Run 32 stress 0.04755265
## Run 33 stress 0.04040733
## ... Procrustes: rmse 2.288621e-05 max resid 4.25862e-05
## ... Similar to previous best
## Run 34 stress 0.05017316
## Run 35 stress 0.04781521
## Run 36 stress 0.05017316
## Run 37 stress 0.2666111
## Run 38 stress 0.05017316
## Run 39 stress 0.04663052
## Run 40 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 5.293068e-06 max resid 9.744446e-06
## ... Similar to previous best
## Run 41 stress 0.04040732
## ... Procrustes: rmse 6.760298e-06 max resid 1.512237e-05
## ... Similar to previous best
## Run 42 stress 0.05017328
## Run 43 stress 0.04472623
## Run 44 stress 0.04040732
## ... Procrustes: rmse 6.769154e-06 max resid 1.187928e-05
## ... Similar to previous best
## Run 45 stress 0.04781521
## Run 46 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 2.386028e-06 max resid 6.907018e-06
## ... Similar to previous best
## Run 47 stress 0.04870928
## Run 48 stress 0.04870928
## Run 49 stress 0.04662835
## Run 50 stress 0.04040732
## ... Procrustes: rmse 4.216391e-06 max resid 1.270466e-05
## ... Similar to previous best
## Run 51 stress 0.04662835
## Run 52 stress 0.05017323
## Run 53 stress 0.04870929
## Run 54 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 5.69211e-06 max resid 1.113538e-05
## ... Similar to previous best
## Run 55 stress 0.04040732
## ... Procrustes: rmse 3.478777e-06 max resid 8.741177e-06
## ... Similar to previous best
## Run 56 stress 0.05017317
## Run 57 stress 0.04040732
## ... Procrustes: rmse 1.474272e-05 max resid 2.614626e-05
## ... Similar to previous best
## Run 58 stress 0.05017316
## Run 59 stress 0.05017319
## Run 60 stress 0.04755265
## Run 61 stress 0.05017321
## Run 62 stress 0.05353507
## Run 63 stress 0.04781521
## Run 64 stress 0.04472623
## Run 65 stress 0.04040732
## ... Procrustes: rmse 8.33456e-06 max resid 1.67108e-05
## ... Similar to previous best
## Run 66 stress 0.04662845
## Run 67 stress 0.0487093
## Run 68 stress 0.04040732
## ... Procrustes: rmse 6.791431e-06 max resid 1.504265e-05
## ... Similar to previous best
## Run 69 stress 0.04472624
## Run 70 stress 0.04040732
## ... Procrustes: rmse 4.49188e-06 max resid 8.610318e-06
## ... Similar to previous best
## Run 71 stress 0.04040732
## ... Procrustes: rmse 8.320751e-06 max resid 1.707413e-05
## ... Similar to previous best
## Run 72 stress 0.04755264
## Run 73 stress 0.04870931
## Run 74 stress 0.04040732
## ... Procrustes: rmse 6.122042e-06 max resid 1.146254e-05
## ... Similar to previous best
## Run 75 stress 0.04781521
## Run 76 stress 0.04755255
## Run 77 stress 0.05017319
## Run 78 stress 0.04663056
## Run 79 stress 0.05353508
## Run 80 stress 0.04870929
## Run 81 stress 0.04040732
## ... Procrustes: rmse 6.512707e-06 max resid 1.395794e-05
## ... Similar to previous best
## Run 82 stress 0.04040732
## ... Procrustes: rmse 6.600175e-06 max resid 1.160349e-05
## ... Similar to previous best
## Run 83 stress 0.04040732
## ... Procrustes: rmse 2.201906e-05 max resid 4.375736e-05
## ... Similar to previous best
## Run 84 stress 0.04662836
## Run 85 stress 0.04472623
## Run 86 stress 0.04040732
## ... Procrustes: rmse 9.212499e-06 max resid 1.66041e-05
## ... Similar to previous best
## Run 87 stress 0.04755266
## Run 88 stress 0.04040732
## ... Procrustes: rmse 3.744583e-05 max resid 6.674025e-05
## ... Similar to previous best
## Run 89 stress 0.04781521
## Run 90 stress 0.0447148
## Run 91 stress 0.05017324
## Run 92 stress 0.04040732
## ... Procrustes: rmse 9.554731e-06 max resid 2.133194e-05
## ... Similar to previous best
## Run 93 stress 0.04040732
## ... Procrustes: rmse 4.947743e-06 max resid 9.255001e-06
## ... Similar to previous best
## Run 94 stress 0.05017317
## Run 95 stress 0.04662835
## Run 96 stress 0.04755256
## Run 97 stress 0.05017321
## Run 98 stress 0.04040732
## ... Procrustes: rmse 5.928459e-06 max resid 1.135619e-05
## ... Similar to previous best
## Run 99 stress 0.04755253
## Run 100 stress 0.04040732
## ... Procrustes: rmse 1.265209e-05 max resid 2.759514e-05
## ... Similar to previous best
## Run 101 stress 0.04781521
## Run 102 stress 0.04040732
## ... Procrustes: rmse 1.876414e-05 max resid 3.365275e-05
## ... Similar to previous best
## Run 103 stress 0.04040732
## ... Procrustes: rmse 3.532723e-05 max resid 6.38212e-05
## ... Similar to previous best
## Run 104 stress 0.2551952
## Run 105 stress 0.04472623
## Run 106 stress 0.05353513
## Run 107 stress 0.04040732
## ... Procrustes: rmse 8.436863e-06 max resid 1.569456e-05
## ... Similar to previous best
## Run 108 stress 0.249051
## Run 109 stress 0.04781521
## Run 110 stress 0.04755258
## Run 111 stress 0.04040732
## ... Procrustes: rmse 2.496967e-05 max resid 4.421477e-05
## ... Similar to previous best
## Run 112 stress 0.04662835
## Run 113 stress 0.04755256
## Run 114 stress 0.04870931
## Run 115 stress 0.04040732
## ... Procrustes: rmse 7.967507e-06 max resid 1.419512e-05
## ... Similar to previous best
## Run 116 stress 0.04781522
## Run 117 stress 0.04781521
## Run 118 stress 0.04040732
## ... Procrustes: rmse 8.699119e-06 max resid 1.530135e-05
## ... Similar to previous best
## Run 119 stress 0.04781521
## Run 120 stress 0.04870932
## Run 121 stress 0.04040732
## ... Procrustes: rmse 1.066532e-05 max resid 2.14797e-05
## ... Similar to previous best
## Run 122 stress 0.04040734
## ... Procrustes: rmse 6.291959e-05 max resid 0.000111874
## ... Similar to previous best
## Run 123 stress 0.04781521
## Run 124 stress 0.05353509
## Run 125 stress 0.0487093
## Run 126 stress 0.04040732
## ... Procrustes: rmse 1.117954e-05 max resid 2.014138e-05
## ... Similar to previous best
## Run 127 stress 0.04040732
## ... Procrustes: rmse 6.643877e-06 max resid 1.491215e-05
## ... Similar to previous best
## Run 128 stress 0.04663051
## Run 129 stress 0.05017316
## Run 130 stress 0.04870933
## Run 131 stress 0.04870931
## Run 132 stress 0.04040732
## ... Procrustes: rmse 6.297678e-06 max resid 1.250546e-05
## ... Similar to previous best
## Run 133 stress 0.05017315
## Run 134 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 3.96799e-06 max resid 6.130009e-06
## ... Similar to previous best
## Run 135 stress 0.04040732
## ... Procrustes: rmse 7.71963e-06 max resid 1.407907e-05
## ... Similar to previous best
## Run 136 stress 0.04870928
## Run 137 stress 0.04472623
## Run 138 stress 0.04662835
## Run 139 stress 0.05017318
## Run 140 stress 0.04040732
## ... Procrustes: rmse 3.839716e-05 max resid 6.826293e-05
## ... Similar to previous best
## Run 141 stress 0.2815751
## Run 142 stress 0.04040732
## ... Procrustes: rmse 8.945609e-06 max resid 1.663592e-05
## ... Similar to previous best
## Run 143 stress 0.04755256
## Run 144 stress 0.05017315
## Run 145 stress 0.05353518
## Run 146 stress 0.0475527
## Run 147 stress 0.04755258
## Run 148 stress 0.04472623
## Run 149 stress 0.04040732
## ... Procrustes: rmse 2.159182e-05 max resid 4.132551e-05
## ... Similar to previous best
## Run 150 stress 0.04870931
## Run 151 stress 0.05017316
## Run 152 stress 0.04472623
## Run 153 stress 0.04040732
## ... Procrustes: rmse 8.555714e-06 max resid 1.624224e-05
## ... Similar to previous best
## Run 154 stress 0.04870929
## Run 155 stress 0.04040732
## ... Procrustes: rmse 1.400406e-05 max resid 2.506809e-05
## ... Similar to previous best
## Run 156 stress 0.04662837
## Run 157 stress 0.04662836
## Run 158 stress 0.04871638
## Run 159 stress 0.04870929
## Run 160 stress 0.04040732
## ... Procrustes: rmse 1.013122e-05 max resid 1.862961e-05
## ... Similar to previous best
## Run 161 stress 0.04040732
## ... Procrustes: rmse 7.226951e-06 max resid 1.277983e-05
## ... Similar to previous best
## Run 162 stress 0.04662836
## Run 163 stress 0.04472623
## Run 164 stress 0.04662841
## Run 165 stress 0.04040733
## ... Procrustes: rmse 3.420934e-05 max resid 6.391865e-05
## ... Similar to previous best
## Run 166 stress 0.04870929
## Run 167 stress 0.05353514
## Run 168 stress 0.04781521
## Run 169 stress 0.2820455
## Run 170 stress 0.0475526
## Run 171 stress 0.3578488
## Run 172 stress 0.0447148
## Run 173 stress 0.04870929
## Run 174 stress 0.04781521
## Run 175 stress 0.04040732
## ... Procrustes: rmse 1.555826e-05 max resid 3.180188e-05
## ... Similar to previous best
## Run 176 stress 0.05017316
## Run 177 stress 0.04870932
## Run 178 stress 0.04870929
## Run 179 stress 0.04040732
## ... Procrustes: rmse 3.213715e-05 max resid 5.7346e-05
## ... Similar to previous best
## Run 180 stress 0.04040732
## ... Procrustes: rmse 1.348651e-05 max resid 2.480711e-05
## ... Similar to previous best
## Run 181 stress 0.04662836
## Run 182 stress 0.05017317
## Run 183 stress 0.05353516
## Run 184 stress 0.04870933
## Run 185 stress 0.04663048
## Run 186 stress 0.04040732
## ... Procrustes: rmse 9.284735e-06 max resid 1.884696e-05
## ... Similar to previous best
## Run 187 stress 0.04755269
## Run 188 stress 0.04040732
## ... Procrustes: rmse 1.712651e-05 max resid 3.146713e-05
## ... Similar to previous best
## Run 189 stress 0.04040732
## ... Procrustes: rmse 3.580631e-06 max resid 7.826716e-06
## ... Similar to previous best
## Run 190 stress 0.04040732
## ... Procrustes: rmse 1.31192e-05 max resid 2.52701e-05
## ... Similar to previous best
## Run 191 stress 0.04040732
## ... Procrustes: rmse 4.937043e-06 max resid 9.483441e-06
## ... Similar to previous best
## Run 192 stress 0.04781521
## Run 193 stress 0.04040732
## ... Procrustes: rmse 6.526138e-06 max resid 1.575966e-05
## ... Similar to previous best
## Run 194 stress 0.04040732
## ... Procrustes: rmse 1.184438e-05 max resid 2.114398e-05
## ... Similar to previous best
## Run 195 stress 0.05017316
## Run 196 stress 0.05017316
## Run 197 stress 0.05017317
## Run 198 stress 0.04040732
## ... Procrustes: rmse 1.384573e-05 max resid 2.577554e-05
## ... Similar to previous best
## Run 199 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 2.694533e-06 max resid 5.757204e-06
## ... Similar to previous best
## Run 200 stress 0.2729324
## Run 201 stress 0.04870928
## Run 202 stress 0.0447148
## Run 203 stress 0.04755263
## Run 204 stress 0.04472623
## Run 205 stress 0.04755263
## Run 206 stress 0.04040732
## ... Procrustes: rmse 2.209009e-05 max resid 4.143171e-05
## ... Similar to previous best
## Run 207 stress 0.04755266
## Run 208 stress 0.04781521
## Run 209 stress 0.04662835
## Run 210 stress 0.04040732
## ... Procrustes: rmse 1.704342e-05 max resid 3.029123e-05
## ... Similar to previous best
## Run 211 stress 0.04040732
## ... Procrustes: rmse 8.079499e-06 max resid 1.657837e-05
## ... Similar to previous best
## Run 212 stress 0.04662842
## Run 213 stress 0.04755257
## Run 214 stress 0.04870929
## Run 215 stress 0.0535351
## Run 216 stress 0.04472623
## Run 217 stress 0.04040732
## ... Procrustes: rmse 1.214293e-05 max resid 2.564892e-05
## ... Similar to previous best
## Run 218 stress 0.04870931
## Run 219 stress 0.04755268
## Run 220 stress 0.0487093
## Run 221 stress 0.04040732
## ... Procrustes: rmse 9.598011e-06 max resid 1.839256e-05
## ... Similar to previous best
## Run 222 stress 0.04040732
## ... Procrustes: rmse 1.697958e-05 max resid 3.185353e-05
## ... Similar to previous best
## Run 223 stress 0.04755269
## Run 224 stress 0.04662838
## Run 225 stress 0.04662839
## Run 226 stress 0.04870928
## Run 227 stress 0.04040733
## ... Procrustes: rmse 1.130293e-05 max resid 3.038279e-05
## ... Similar to previous best
## Run 228 stress 0.04040732
## ... Procrustes: rmse 1.468958e-05 max resid 3.271056e-05
## ... Similar to previous best
## Run 229 stress 0.04781522
## Run 230 stress 0.04040732
## ... Procrustes: rmse 8.685329e-06 max resid 1.718219e-05
## ... Similar to previous best
## Run 231 stress 0.04040732
## ... Procrustes: rmse 1.290868e-05 max resid 2.393941e-05
## ... Similar to previous best
## Run 232 stress 0.04040732
## ... Procrustes: rmse 1.001386e-05 max resid 1.882521e-05
## ... Similar to previous best
## Run 233 stress 0.04781521
## Run 234 stress 0.04663049
## Run 235 stress 0.05353507
## Run 236 stress 0.04781522
## Run 237 stress 0.04755275
## Run 238 stress 0.05017323
## Run 239 stress 0.04040733
## ... Procrustes: rmse 4.741153e-05 max resid 8.698396e-05
## ... Similar to previous best
## Run 240 stress 0.05017315
## Run 241 stress 0.04755264
## Run 242 stress 0.04871638
## Run 243 stress 0.0501732
## Run 244 stress 0.04663049
## Run 245 stress 0.04040732
## ... Procrustes: rmse 3.027078e-05 max resid 5.693158e-05
## ... Similar to previous best
## Run 246 stress 0.05017318
## Run 247 stress 0.04040732
## ... Procrustes: rmse 1.129229e-05 max resid 2.050958e-05
## ... Similar to previous best
## Run 248 stress 0.05017323
## Run 249 stress 0.04040732
## ... Procrustes: rmse 7.14703e-06 max resid 1.29605e-05
## ... Similar to previous best
## Run 250 stress 0.04870929
## Run 251 stress 0.04040732
## ... Procrustes: rmse 8.681672e-06 max resid 1.661434e-05
## ... Similar to previous best
## Run 252 stress 0.04755262
## Run 253 stress 0.04472623
## Run 254 stress 0.05017316
## Run 255 stress 0.05017317
## Run 256 stress 0.04040735
## ... Procrustes: rmse 6.512018e-05 max resid 0.0001163069
## ... Similar to previous best
## Run 257 stress 0.04781521
## Run 258 stress 0.04755264
## Run 259 stress 0.04472623
## Run 260 stress 0.04040732
## ... Procrustes: rmse 1.702343e-05 max resid 3.994911e-05
## ... Similar to previous best
## Run 261 stress 0.04870928
## Run 262 stress 0.04040732
## ... Procrustes: rmse 7.789811e-06 max resid 1.503754e-05
## ... Similar to previous best
## Run 263 stress 0.04755261
## Run 264 stress 0.04040732
## ... Procrustes: rmse 3.448942e-06 max resid 6.529461e-06
## ... Similar to previous best
## Run 265 stress 0.05017324
## Run 266 stress 0.04040732
## ... Procrustes: rmse 1.409121e-05 max resid 2.611088e-05
## ... Similar to previous best
## Run 267 stress 0.04040732
## ... Procrustes: rmse 1.921111e-06 max resid 3.415702e-06
## ... Similar to previous best
## Run 268 stress 0.05017317
## Run 269 stress 0.04040732
## ... Procrustes: rmse 9.676327e-06 max resid 1.900794e-05
## ... Similar to previous best
## Run 270 stress 0.04040732
## ... Procrustes: rmse 3.521447e-05 max resid 6.380954e-05
## ... Similar to previous best
## Run 271 stress 0.04662836
## Run 272 stress 0.04040732
## ... Procrustes: rmse 2.204973e-05 max resid 4.977186e-05
## ... Similar to previous best
## Run 273 stress 0.04040732
## ... Procrustes: rmse 2.512867e-05 max resid 5.639339e-05
## ... Similar to previous best
## Run 274 stress 0.04755254
## Run 275 stress 0.04870928
## Run 276 stress 0.04040734
## ... Procrustes: rmse 6.015479e-05 max resid 0.0001109076
## ... Similar to previous best
## Run 277 stress 0.04662835
## Run 278 stress 0.04472625
## Run 279 stress 0.04040732
## ... Procrustes: rmse 2.661122e-05 max resid 4.855862e-05
## ... Similar to previous best
## Run 280 stress 0.04040732
## ... Procrustes: rmse 2.02802e-05 max resid 3.787523e-05
## ... Similar to previous best
## Run 281 stress 0.0466284
## Run 282 stress 0.04870929
## Run 283 stress 0.04472624
## Run 284 stress 0.04040735
## ... Procrustes: rmse 2.286065e-05 max resid 5.799993e-05
## ... Similar to previous best
## Run 285 stress 0.04472624
## Run 286 stress 0.05017315
## Run 287 stress 0.04662837
## Run 288 stress 0.04040732
## ... Procrustes: rmse 6.556452e-06 max resid 1.225728e-05
## ... Similar to previous best
## Run 289 stress 0.04662835
## Run 290 stress 0.04870936
## Run 291 stress 0.05017317
## Run 292 stress 0.04870936
## Run 293 stress 0.04755268
## Run 294 stress 0.04662835
## Run 295 stress 0.0487093
## Run 296 stress 0.04040732
## ... Procrustes: rmse 2.101385e-06 max resid 3.944376e-06
## ... Similar to previous best
## Run 297 stress 0.04471762
## Run 298 stress 0.04040732
## ... Procrustes: rmse 3.554596e-05 max resid 6.547314e-05
## ... Similar to previous best
## Run 299 stress 0.04040732
## ... Procrustes: rmse 3.554385e-06 max resid 7.119287e-06
## ... Similar to previous best
## Run 300 stress 0.04040732
## ... Procrustes: rmse 3.843499e-06 max resid 7.40188e-06
## ... Similar to previous best
## Run 301 stress 0.04870929
## Run 302 stress 0.04755256
## Run 303 stress 0.04870928
## Run 304 stress 0.04040732
## ... Procrustes: rmse 1.003798e-05 max resid 1.883389e-05
## ... Similar to previous best
## Run 305 stress 0.04870928
## Run 306 stress 0.04040732
## ... Procrustes: rmse 1.126144e-05 max resid 2.297349e-05
## ... Similar to previous best
## Run 307 stress 0.05017318
## Run 308 stress 0.05017317
## Run 309 stress 0.05017316
## Run 310 stress 0.05017317
## Run 311 stress 0.04755261
## Run 312 stress 0.04040732
## ... Procrustes: rmse 1.429796e-05 max resid 2.647842e-05
## ... Similar to previous best
## Run 313 stress 0.04040732
## ... Procrustes: rmse 2.808434e-05 max resid 5.114973e-05
## ... Similar to previous best
## Run 314 stress 0.04781521
## Run 315 stress 0.04040732
## ... Procrustes: rmse 6.216765e-06 max resid 1.264225e-05
## ... Similar to previous best
## Run 316 stress 0.05017318
## Run 317 stress 0.04662837
## Run 318 stress 0.04870929
## Run 319 stress 0.04472624
## Run 320 stress 0.0475526
## Run 321 stress 0.04472623
## Run 322 stress 0.04040732
## ... Procrustes: rmse 1.22799e-05 max resid 2.332555e-05
## ... Similar to previous best
## Run 323 stress 0.04870929
## Run 324 stress 0.04781522
## Run 325 stress 0.04472623
## Run 326 stress 0.04781521
## Run 327 stress 0.0475526
## Run 328 stress 0.0475526
## Run 329 stress 0.04040732
## ... Procrustes: rmse 1.177509e-05 max resid 2.229274e-05
## ... Similar to previous best
## Run 330 stress 0.05017316
## Run 331 stress 0.04040732
## ... Procrustes: rmse 1.625207e-05 max resid 3.029052e-05
## ... Similar to previous best
## Run 332 stress 0.04040732
## ... Procrustes: rmse 2.256446e-05 max resid 4.195255e-05
## ... Similar to previous best
## Run 333 stress 0.04755259
## Run 334 stress 0.04040732
## ... Procrustes: rmse 1.969826e-05 max resid 3.588552e-05
## ... Similar to previous best
## Run 335 stress 0.04040732
## ... Procrustes: rmse 7.108566e-06 max resid 1.627319e-05
## ... Similar to previous best
## Run 336 stress 0.04755261
## Run 337 stress 0.04870928
## Run 338 stress 0.04870931
## Run 339 stress 0.04472624
## Run 340 stress 0.04040732
## ... Procrustes: rmse 2.738161e-05 max resid 4.928769e-05
## ... Similar to previous best
## Run 341 stress 0.04781521
## Run 342 stress 0.05017316
## Run 343 stress 0.05017316
## Run 344 stress 0.04040732
## ... Procrustes: rmse 5.600726e-06 max resid 1.014986e-05
## ... Similar to previous best
## Run 345 stress 0.04040732
## ... Procrustes: rmse 5.456796e-06 max resid 1.115193e-05
## ... Similar to previous best
## Run 346 stress 0.04781521
## Run 347 stress 0.04040732
## ... Procrustes: rmse 1.787457e-05 max resid 3.147303e-05
## ... Similar to previous best
## Run 348 stress 0.04755253
## Run 349 stress 0.04040732
## ... Procrustes: rmse 1.502877e-05 max resid 3.111399e-05
## ... Similar to previous best
## Run 350 stress 0.04040732
## ... Procrustes: rmse 1.491852e-05 max resid 3.076026e-05
## ... Similar to previous best
## Run 351 stress 0.04040732
## ... Procrustes: rmse 1.233062e-05 max resid 2.266818e-05
## ... Similar to previous best
## Run 352 stress 0.04663047
## Run 353 stress 0.04870929
## Run 354 stress 0.05017319
## Run 355 stress 0.04781521
## Run 356 stress 0.04781521
## Run 357 stress 0.04781521
## Run 358 stress 0.04781521
## Run 359 stress 0.3095288
## Run 360 stress 0.04870928
## Run 361 stress 0.04755258
## Run 362 stress 0.04472623
## Run 363 stress 0.04662835
## Run 364 stress 0.04472623
## Run 365 stress 0.04040732
## ... Procrustes: rmse 1.307082e-05 max resid 2.382421e-05
## ... Similar to previous best
## Run 366 stress 0.05017319
## Run 367 stress 0.04040732
## ... Procrustes: rmse 6.282821e-06 max resid 1.20621e-05
## ... Similar to previous best
## Run 368 stress 0.04781521
## Run 369 stress 0.04755268
## Run 370 stress 0.05017319
## Run 371 stress 0.04040732
## ... Procrustes: rmse 5.155542e-06 max resid 9.964557e-06
## ... Similar to previous best
## Run 372 stress 0.04870928
## Run 373 stress 0.04870929
## Run 374 stress 0.04472623
## Run 375 stress 0.04870928
## Run 376 stress 0.2820072
## Run 377 stress 0.04040732
## ... Procrustes: rmse 1.178705e-05 max resid 2.291158e-05
## ... Similar to previous best
## Run 378 stress 0.05017319
## Run 379 stress 0.255192
## Run 380 stress 0.2819539
## Run 381 stress 0.04781521
## Run 382 stress 0.04870934
## Run 383 stress 0.2700182
## Run 384 stress 0.04040732
## ... Procrustes: rmse 6.988365e-06 max resid 1.347334e-05
## ... Similar to previous best
## Run 385 stress 0.04662835
## Run 386 stress 0.04040732
## ... Procrustes: rmse 1.403901e-05 max resid 2.827716e-05
## ... Similar to previous best
## Run 387 stress 0.04040732
## ... Procrustes: rmse 8.219049e-06 max resid 1.747032e-05
## ... Similar to previous best
## Run 388 stress 0.04040733
## ... Procrustes: rmse 3.585964e-05 max resid 7.104581e-05
## ... Similar to previous best
## Run 389 stress 0.04040734
## ... Procrustes: rmse 5.239662e-05 max resid 9.822895e-05
## ... Similar to previous best
## Run 390 stress 0.04472623
## Run 391 stress 0.04472624
## Run 392 stress 0.04755254
## Run 393 stress 0.04870928
## Run 394 stress 0.0475526
## Run 395 stress 0.04040733
## ... Procrustes: rmse 3.518446e-05 max resid 6.835186e-05
## ... Similar to previous best
## Run 396 stress 0.05017316
## Run 397 stress 0.05353515
## Run 398 stress 0.04781523
## Run 399 stress 0.04755271
## Run 400 stress 0.04040732
## ... Procrustes: rmse 1.496106e-05 max resid 3.439863e-05
## ... Similar to previous best
## Run 401 stress 0.04781523
## Run 402 stress 0.05017318
## Run 403 stress 0.04040732
## ... Procrustes: rmse 2.123085e-05 max resid 3.921199e-05
## ... Similar to previous best
## Run 404 stress 0.05353518
## Run 405 stress 0.04755255
## Run 406 stress 0.05353513
## Run 407 stress 0.04040732
## ... Procrustes: rmse 1.277695e-05 max resid 2.36371e-05
## ... Similar to previous best
## Run 408 stress 0.04040732
## ... Procrustes: rmse 9.706051e-06 max resid 1.831726e-05
## ... Similar to previous best
## Run 409 stress 0.04040732
## ... Procrustes: rmse 4.192923e-06 max resid 7.950609e-06
## ... Similar to previous best
## Run 410 stress 0.2820455
## Run 411 stress 0.04040732
## ... Procrustes: rmse 4.996432e-06 max resid 8.899096e-06
## ... Similar to previous best
## Run 412 stress 0.04040733
## ... Procrustes: rmse 2.554826e-05 max resid 4.863284e-05
## ... Similar to previous best
## Run 413 stress 0.05353514
## Run 414 stress 0.04871639
## Run 415 stress 0.04040732
## ... Procrustes: rmse 5.91961e-06 max resid 1.170701e-05
## ... Similar to previous best
## Run 416 stress 0.04472624
## Run 417 stress 0.05353512
## Run 418 stress 0.04662838
## Run 419 stress 0.04040732
## ... Procrustes: rmse 3.769669e-05 max resid 7.067768e-05
## ... Similar to previous best
## Run 420 stress 0.04040732
## ... Procrustes: rmse 2.029873e-05 max resid 3.726428e-05
## ... Similar to previous best
## Run 421 stress 0.05017318
## Run 422 stress 0.04870928
## Run 423 stress 0.04040732
## ... Procrustes: rmse 1.340853e-05 max resid 2.451428e-05
## ... Similar to previous best
## Run 424 stress 0.04472623
## Run 425 stress 0.04040732
## ... Procrustes: rmse 1.053159e-05 max resid 1.903161e-05
## ... Similar to previous best
## Run 426 stress 0.05017316
## Run 427 stress 0.04472624
## Run 428 stress 0.04781521
## Run 429 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 2.181339e-06 max resid 4.211665e-06
## ... Similar to previous best
## Run 430 stress 0.04870928
## Run 431 stress 0.04040732
## ... Procrustes: rmse 1.641316e-05 max resid 3.947134e-05
## ... Similar to previous best
## Run 432 stress 0.04040732
## ... Procrustes: rmse 2.380347e-05 max resid 4.214901e-05
## ... Similar to previous best
## Run 433 stress 0.0475526
## Run 434 stress 0.04472624
## Run 435 stress 0.04870938
## Run 436 stress 0.04040732
## ... Procrustes: rmse 8.06421e-06 max resid 1.528732e-05
## ... Similar to previous best
## Run 437 stress 0.04040732
## ... Procrustes: rmse 6.306343e-06 max resid 1.122827e-05
## ... Similar to previous best
## Run 438 stress 0.05017319
## Run 439 stress 0.04040732
## ... Procrustes: rmse 1.05013e-05 max resid 2.204054e-05
## ... Similar to previous best
## Run 440 stress 0.04755262
## Run 441 stress 0.04040732
## ... Procrustes: rmse 2.05983e-05 max resid 3.709569e-05
## ... Similar to previous best
## Run 442 stress 0.04781521
## Run 443 stress 0.2825458
## Run 444 stress 0.04781521
## Run 445 stress 0.04755267
## Run 446 stress 0.04472625
## Run 447 stress 0.04781521
## Run 448 stress 0.04870928
## Run 449 stress 0.04781521
## Run 450 stress 0.04040732
## ... Procrustes: rmse 3.740007e-06 max resid 7.285776e-06
## ... Similar to previous best
## Run 451 stress 0.04040732
## ... Procrustes: rmse 1.510093e-06 max resid 2.40829e-06
## ... Similar to previous best
## Run 452 stress 0.04040732
## ... Procrustes: rmse 3.47366e-06 max resid 7.504835e-06
## ... Similar to previous best
## Run 453 stress 0.04040732
## ... Procrustes: rmse 6.355934e-06 max resid 1.128908e-05
## ... Similar to previous best
## Run 454 stress 0.04040732
## ... Procrustes: rmse 1.175365e-06 max resid 1.747326e-06
## ... Similar to previous best
## Run 455 stress 0.04870928
## Run 456 stress 0.2811955
## Run 457 stress 0.04040732
## ... Procrustes: rmse 7.207271e-06 max resid 1.278636e-05
## ... Similar to previous best
## Run 458 stress 0.04662837
## Run 459 stress 0.04040732
## ... Procrustes: rmse 1.175038e-05 max resid 2.099232e-05
## ... Similar to previous best
## Run 460 stress 0.04870932
## Run 461 stress 0.04040732
## ... Procrustes: rmse 4.738588e-06 max resid 9.375677e-06
## ... Similar to previous best
## Run 462 stress 0.05017317
## Run 463 stress 0.04663058
## Run 464 stress 0.04040732
## ... Procrustes: rmse 9.232701e-06 max resid 2.028416e-05
## ... Similar to previous best
## Run 465 stress 0.2820455
## Run 466 stress 0.05017317
## Run 467 stress 0.05017319
## Run 468 stress 0.04040733
## ... Procrustes: rmse 4.880435e-05 max resid 8.637773e-05
## ... Similar to previous best
## Run 469 stress 0.04781521
## Run 470 stress 0.04040732
## ... Procrustes: rmse 1.150441e-05 max resid 2.146243e-05
## ... Similar to previous best
## Run 471 stress 0.05017318
## Run 472 stress 0.04662838
## Run 473 stress 0.05017318
## Run 474 stress 0.04040732
## ... Procrustes: rmse 1.855688e-06 max resid 3.100377e-06
## ... Similar to previous best
## Run 475 stress 0.04040732
## ... Procrustes: rmse 6.151474e-06 max resid 1.188785e-05
## ... Similar to previous best
## Run 476 stress 0.04755274
## Run 477 stress 0.04755262
## Run 478 stress 0.04870931
## Run 479 stress 0.04662841
## Run 480 stress 0.2490591
## Run 481 stress 0.04472624
## Run 482 stress 0.05353521
## Run 483 stress 0.04040732
## ... Procrustes: rmse 2.980107e-06 max resid 6.728751e-06
## ... Similar to previous best
## Run 484 stress 0.04781521
## Run 485 stress 0.05017318
## Run 486 stress 0.04870931
## Run 487 stress 0.04781521
## Run 488 stress 0.0447148
## Run 489 stress 0.04040732
## ... Procrustes: rmse 5.959038e-06 max resid 1.323685e-05
## ... Similar to previous best
## Run 490 stress 0.04663048
## Run 491 stress 0.04870934
## Run 492 stress 0.0487093
## Run 493 stress 0.2736212
## Run 494 stress 0.04040732
## ... Procrustes: rmse 2.001565e-05 max resid 4.287309e-05
## ... Similar to previous best
## Run 495 stress 0.05017315
## Run 496 stress 0.04040732
## ... Procrustes: rmse 5.676546e-06 max resid 1.011043e-05
## ... Similar to previous best
## Run 497 stress 0.04472623
## Run 498 stress 0.05017319
## Run 499 stress 0.05017317
## Run 500 stress 0.04755254
## *** Best solution repeated 24 times# Stratified lakes
fds_NMDS <- metaMDS(fds_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.04319061
## Run 1 stress 0.03501043
## ... New best solution
## ... Procrustes: rmse 0.1530271 max resid 0.2647951
## Run 2 stress 0.09269267
## Run 3 stress 0.04319061
## Run 4 stress 0.03635602
## Run 5 stress 0.03501044
## ... Procrustes: rmse 2.103455e-05 max resid 4.53517e-05
## ... Similar to previous best
## Run 6 stress 0.03635603
## Run 7 stress 0.04319061
## Run 8 stress 0.2538018
## Run 9 stress 0.2951512
## Run 10 stress 0.04319061
## Run 11 stress 0.04319061
## Run 12 stress 0.03501046
## ... Procrustes: rmse 7.775032e-05 max resid 0.0001654158
## ... Similar to previous best
## Run 13 stress 0.03635607
## Run 14 stress 0.257864
## Run 15 stress 0.03635602
## Run 16 stress 0.04319061
## Run 17 stress 0.03501047
## ... Procrustes: rmse 8.884818e-05 max resid 0.0001868573
## ... Similar to previous best
## Run 18 stress 0.03501043
## ... Procrustes: rmse 1.025179e-05 max resid 1.842045e-05
## ... Similar to previous best
## Run 19 stress 0.036356
## Run 20 stress 0.03635601
## Run 21 stress 0.09269264
## Run 22 stress 0.03635603
## Run 23 stress 0.2480466
## Run 24 stress 0.04319061
## Run 25 stress 0.2852145
## Run 26 stress 0.09815918
## Run 27 stress 0.036356
## Run 28 stress 0.04319061
## Run 29 stress 0.03501042
## ... New best solution
## ... Procrustes: rmse 6.49781e-05 max resid 0.0001343971
## ... Similar to previous best
## Run 30 stress 0.036356
## Run 31 stress 0.03501046
## ... Procrustes: rmse 0.0001426749 max resid 0.0002998465
## ... Similar to previous best
## Run 32 stress 0.04319061
## Run 33 stress 0.03635603
## Run 34 stress 0.04319061
## Run 35 stress 0.09815918
## Run 36 stress 0.03635606
## Run 37 stress 0.036356
## Run 38 stress 0.04319061
## Run 39 stress 0.2136001
## Run 40 stress 0.03501045
## ... Procrustes: rmse 0.0001076445 max resid 0.0002250937
## ... Similar to previous best
## Run 41 stress 0.03635603
## Run 42 stress 0.2842805
## Run 43 stress 0.09815919
## Run 44 stress 0.036356
## Run 45 stress 0.03635599
## Run 46 stress 0.2809268
## Run 47 stress 0.03635599
## Run 48 stress 0.2578638
## Run 49 stress 0.3080557
## Run 50 stress 0.03501056
## ... Procrustes: rmse 0.0001682016 max resid 0.0003496027
## ... Similar to previous best
## Run 51 stress 0.03501047
## ... Procrustes: rmse 0.0001420621 max resid 0.0003000775
## ... Similar to previous best
## Run 52 stress 0.03501049
## ... Procrustes: rmse 0.000178946 max resid 0.0003721139
## ... Similar to previous best
## Run 53 stress 0.04319061
## Run 54 stress 0.03501043
## ... Procrustes: rmse 5.392441e-05 max resid 0.000117388
## ... Similar to previous best
## Run 55 stress 0.03635605
## Run 56 stress 0.04319061
## Run 57 stress 0.04319062
## Run 58 stress 0.03635606
## Run 59 stress 0.03501043
## ... Procrustes: rmse 6.158365e-05 max resid 0.0001190181
## ... Similar to previous best
## Run 60 stress 0.03635605
## Run 61 stress 0.09269266
## Run 62 stress 0.03635604
## Run 63 stress 0.04319061
## Run 64 stress 0.09269266
## Run 65 stress 0.036356
## Run 66 stress 0.04319061
## Run 67 stress 0.03501042
## ... New best solution
## ... Procrustes: rmse 2.898403e-05 max resid 6.007167e-05
## ... Similar to previous best
## Run 68 stress 0.0363561
## Run 69 stress 0.04319061
## Run 70 stress 0.09815918
## Run 71 stress 0.09815918
## Run 72 stress 0.03635602
## Run 73 stress 0.3040332
## Run 74 stress 0.03501043
## ... Procrustes: rmse 1.34361e-05 max resid 2.610059e-05
## ... Similar to previous best
## Run 75 stress 0.04319061
## Run 76 stress 0.2136001
## Run 77 stress 0.3073538
## Run 78 stress 0.03501043
## ... Procrustes: rmse 3.074973e-05 max resid 6.434069e-05
## ... Similar to previous best
## Run 79 stress 0.04319061
## Run 80 stress 0.03635602
## Run 81 stress 0.03501044
## ... Procrustes: rmse 7.622626e-05 max resid 0.0001599976
## ... Similar to previous best
## Run 82 stress 0.03635603
## Run 83 stress 0.09269266
## Run 84 stress 0.036356
## Run 85 stress 0.03635606
## Run 86 stress 0.04319061
## Run 87 stress 0.09269265
## Run 88 stress 0.2233234
## Run 89 stress 0.03635601
## Run 90 stress 0.03635603
## Run 91 stress 0.03501055
## ... Procrustes: rmse 0.0002143894 max resid 0.0004485188
## ... Similar to previous best
## Run 92 stress 0.04319061
## Run 93 stress 0.09269264
## Run 94 stress 0.04319061
## Run 95 stress 0.03501045
## ... Procrustes: rmse 9.691522e-05 max resid 0.0002042619
## ... Similar to previous best
## Run 96 stress 0.03501046
## ... Procrustes: rmse 0.0001107165 max resid 0.0002361537
## ... Similar to previous best
## Run 97 stress 0.09815918
## Run 98 stress 0.04319061
## Run 99 stress 0.03635602
## Run 100 stress 0.3083098
## Run 101 stress 0.04319061
## Run 102 stress 0.04319061
## Run 103 stress 0.04319061
## Run 104 stress 0.03635603
## Run 105 stress 0.2646971
## Run 106 stress 0.04319061
## Run 107 stress 0.2538018
## Run 108 stress 0.2233234
## Run 109 stress 0.03501043
## ... Procrustes: rmse 1.227829e-05 max resid 1.817028e-05
## ... Similar to previous best
## Run 110 stress 0.04319061
## Run 111 stress 0.036356
## Run 112 stress 0.03501042
## ... Procrustes: rmse 2.982458e-05 max resid 5.982319e-05
## ... Similar to previous best
## Run 113 stress 0.03501043
## ... Procrustes: rmse 7.246956e-05 max resid 0.0001485967
## ... Similar to previous best
## Run 114 stress 0.03635606
## Run 115 stress 0.09269267
## Run 116 stress 0.04319061
## Run 117 stress 0.09269266
## Run 118 stress 0.03635599
## Run 119 stress 0.03635609
## Run 120 stress 0.04319061
## Run 121 stress 0.036356
## Run 122 stress 0.09815919
## Run 123 stress 0.036356
## Run 124 stress 0.04319061
## Run 125 stress 0.03501045
## ... Procrustes: rmse 0.0001094454 max resid 0.0002289
## ... Similar to previous best
## Run 126 stress 0.04319061
## Run 127 stress 0.04319061
## Run 128 stress 0.03635604
## Run 129 stress 0.2538018
## Run 130 stress 0.2646971
## Run 131 stress 0.04319061
## Run 132 stress 0.04319061
## Run 133 stress 0.04319061
## Run 134 stress 0.03501053
## ... Procrustes: rmse 0.0001871409 max resid 0.0003886398
## ... Similar to previous best
## Run 135 stress 0.2233234
## Run 136 stress 0.04319061
## Run 137 stress 0.3083098
## Run 138 stress 0.04319061
## Run 139 stress 0.04319061
## Run 140 stress 0.09815918
## Run 141 stress 0.04319061
## Run 142 stress 0.09269265
## Run 143 stress 0.04319061
## Run 144 stress 0.09269264
## Run 145 stress 0.03635606
## Run 146 stress 0.03635603
## Run 147 stress 0.0363561
## Run 148 stress 0.04319061
## Run 149 stress 0.03501048
## ... Procrustes: rmse 0.000132017 max resid 0.0002771874
## ... Similar to previous best
## Run 150 stress 0.04319061
## Run 151 stress 0.04319061
## Run 152 stress 0.03501046
## ... Procrustes: rmse 0.000127479 max resid 0.0002671348
## ... Similar to previous best
## Run 153 stress 0.09269265
## Run 154 stress 0.04319061
## Run 155 stress 0.09815918
## Run 156 stress 0.03501043
## ... Procrustes: rmse 2.36619e-05 max resid 4.892331e-05
## ... Similar to previous best
## Run 157 stress 0.03635607
## Run 158 stress 0.036356
## Run 159 stress 0.04319061
## Run 160 stress 0.03501043
## ... Procrustes: rmse 4.307112e-05 max resid 8.855768e-05
## ... Similar to previous best
## Run 161 stress 0.03635602
## Run 162 stress 0.04319061
## Run 163 stress 0.03501044
## ... Procrustes: rmse 5.273719e-05 max resid 0.0001106041
## ... Similar to previous best
## Run 164 stress 0.04319061
## Run 165 stress 0.03501047
## ... Procrustes: rmse 0.0001180706 max resid 0.0002480916
## ... Similar to previous best
## Run 166 stress 0.04319061
## Run 167 stress 0.3083098
## Run 168 stress 0.04319061
## Run 169 stress 0.09815918
## Run 170 stress 0.04319061
## Run 171 stress 0.03501043
## ... Procrustes: rmse 1.533827e-05 max resid 3.213189e-05
## ... Similar to previous best
## Run 172 stress 0.03635602
## Run 173 stress 0.2136001
## Run 174 stress 0.2233234
## Run 175 stress 0.04319061
## Run 176 stress 0.09269267
## Run 177 stress 0.03501043
## ... Procrustes: rmse 3.870191e-05 max resid 8.086825e-05
## ... Similar to previous best
## Run 178 stress 0.264697
## Run 179 stress 0.04319061
## Run 180 stress 0.04319061
## Run 181 stress 0.04319061
## Run 182 stress 0.03635608
## Run 183 stress 0.2842805
## Run 184 stress 0.03501042
## ... Procrustes: rmse 3.147872e-05 max resid 6.560569e-05
## ... Similar to previous best
## Run 185 stress 0.04319061
## Run 186 stress 0.03501043
## ... Procrustes: rmse 5.648188e-05 max resid 0.0001202346
## ... Similar to previous best
## Run 187 stress 0.04319061
## Run 188 stress 0.04319061
## Run 189 stress 0.04319061
## Run 190 stress 0.09269268
## Run 191 stress 0.03635608
## Run 192 stress 0.03635601
## Run 193 stress 0.03635602
## Run 194 stress 0.04319061
## Run 195 stress 0.04319061
## Run 196 stress 0.2538018
## Run 197 stress 0.04319061
## Run 198 stress 0.04319061
## Run 199 stress 0.0350105
## ... Procrustes: rmse 0.0001640653 max resid 0.0003417369
## ... Similar to previous best
## Run 200 stress 0.04319061
## Run 201 stress 0.09269267
## Run 202 stress 0.03635604
## Run 203 stress 0.03635602
## Run 204 stress 0.03635603
## Run 205 stress 0.03635605
## Run 206 stress 0.03501046
## ... Procrustes: rmse 0.0001287609 max resid 0.0002721933
## ... Similar to previous best
## Run 207 stress 0.09269265
## Run 208 stress 0.0363561
## Run 209 stress 0.03501048
## ... Procrustes: rmse 0.0001552405 max resid 0.0003255187
## ... Similar to previous best
## Run 210 stress 0.04319061
## Run 211 stress 0.0350105
## ... Procrustes: rmse 0.0001442564 max resid 0.0003001832
## ... Similar to previous best
## Run 212 stress 0.09815918
## Run 213 stress 0.03635603
## Run 214 stress 0.09815918
## Run 215 stress 0.306365
## Run 216 stress 0.03635605
## Run 217 stress 0.09815918
## Run 218 stress 0.03501048
## ... Procrustes: rmse 0.0001639404 max resid 0.00034379
## ... Similar to previous best
## Run 219 stress 0.03501052
## ... Procrustes: rmse 0.0001820666 max resid 0.0003805878
## ... Similar to previous best
## Run 220 stress 0.04319061
## Run 221 stress 0.03501043
## ... Procrustes: rmse 4.726908e-05 max resid 9.916255e-05
## ... Similar to previous best
## Run 222 stress 0.04319061
## Run 223 stress 0.3071635
## Run 224 stress 0.03635599
## Run 225 stress 0.03635605
## Run 226 stress 0.2578643
## Run 227 stress 0.03501049
## ... Procrustes: rmse 0.0001504992 max resid 0.0003156101
## ... Similar to previous best
## Run 228 stress 0.3083098
## Run 229 stress 0.09815918
## Run 230 stress 0.03501047
## ... Procrustes: rmse 0.0001426103 max resid 0.0002985265
## ... Similar to previous best
## Run 231 stress 0.04319061
## Run 232 stress 0.03635602
## Run 233 stress 0.03501044
## ... Procrustes: rmse 1.961532e-05 max resid 3.415189e-05
## ... Similar to previous best
## Run 234 stress 0.04319061
## Run 235 stress 0.03501043
## ... Procrustes: rmse 2.725204e-05 max resid 5.542862e-05
## ... Similar to previous best
## Run 236 stress 0.09815918
## Run 237 stress 0.03501049
## ... Procrustes: rmse 0.0001695389 max resid 0.0003555416
## ... Similar to previous best
## Run 238 stress 0.04319061
## Run 239 stress 0.04319061
## Run 240 stress 0.0981592
## Run 241 stress 0.03501055
## ... Procrustes: rmse 0.0002337073 max resid 0.0004902976
## ... Similar to previous best
## Run 242 stress 0.04319061
## Run 243 stress 0.09269267
## Run 244 stress 0.04319061
## Run 245 stress 0.2538018
## Run 246 stress 0.04319061
## Run 247 stress 0.036356
## Run 248 stress 0.03635599
## Run 249 stress 0.03501042
## ... Procrustes: rmse 5.411407e-06 max resid 8.102524e-06
## ... Similar to previous best
## Run 250 stress 0.03635606
## Run 251 stress 0.09269264
## Run 252 stress 0.04319061
## Run 253 stress 0.04319061
## Run 254 stress 0.04319061
## Run 255 stress 0.03501042
## ... New best solution
## ... Procrustes: rmse 1.266312e-05 max resid 2.84144e-05
## ... Similar to previous best
## Run 256 stress 0.03635602
## Run 257 stress 0.03501048
## ... Procrustes: rmse 0.0001460686 max resid 0.0003134972
## ... Similar to previous best
## Run 258 stress 0.03501044
## ... Procrustes: rmse 7.358206e-05 max resid 0.0001597857
## ... Similar to previous best
## Run 259 stress 0.03501045
## ... Procrustes: rmse 9.743525e-05 max resid 0.0001978316
## ... Similar to previous best
## Run 260 stress 0.03501052
## ... Procrustes: rmse 0.0001823009 max resid 0.0003739064
## ... Similar to previous best
## Run 261 stress 0.04319061
## Run 262 stress 0.03501046
## ... Procrustes: rmse 0.0001217546 max resid 0.000249204
## ... Similar to previous best
## Run 263 stress 0.2136001
## Run 264 stress 0.04319061
## Run 265 stress 0.03501047
## ... Procrustes: rmse 0.000125198 max resid 0.0002677487
## ... Similar to previous best
## Run 266 stress 0.09269265
## Run 267 stress 0.2842805
## Run 268 stress 0.04319061
## Run 269 stress 0.04319061
## Run 270 stress 0.03635599
## Run 271 stress 0.09815918
## Run 272 stress 0.04319061
## Run 273 stress 0.03501044
## ... Procrustes: rmse 6.277429e-05 max resid 0.0001362912
## ... Similar to previous best
## Run 274 stress 0.04319061
## Run 275 stress 0.03635608
## Run 276 stress 0.04319061
## Run 277 stress 0.03635607
## Run 278 stress 0.04319061
## Run 279 stress 0.03501043
## ... Procrustes: rmse 4.211731e-05 max resid 9.334111e-05
## ... Similar to previous best
## Run 280 stress 0.03635605
## Run 281 stress 0.03635601
## Run 282 stress 0.03501045
## ... Procrustes: rmse 9.928924e-05 max resid 0.0002136593
## ... Similar to previous best
## Run 283 stress 0.03501043
## ... Procrustes: rmse 2.91355e-05 max resid 6.512046e-05
## ... Similar to previous best
## Run 284 stress 0.03635608
## Run 285 stress 0.03501044
## ... Procrustes: rmse 7.187011e-05 max resid 0.0001454065
## ... Similar to previous best
## Run 286 stress 0.2233234
## Run 287 stress 0.09815918
## Run 288 stress 0.09269266
## Run 289 stress 0.2842805
## Run 290 stress 0.03501043
## ... Procrustes: rmse 1.023652e-05 max resid 2.011788e-05
## ... Similar to previous best
## Run 291 stress 0.04319061
## Run 292 stress 0.03501046
## ... Procrustes: rmse 9.592396e-05 max resid 0.0002058364
## ... Similar to previous best
## Run 293 stress 0.03635601
## Run 294 stress 0.04319061
## Run 295 stress 0.04319061
## Run 296 stress 0.03635609
## Run 297 stress 0.2842805
## Run 298 stress 0.09815918
## Run 299 stress 0.09269264
## Run 300 stress 0.04319061
## Run 301 stress 0.03635607
## Run 302 stress 0.04319061
## Run 303 stress 0.03501047
## ... Procrustes: rmse 0.0001065401 max resid 0.0002151718
## ... Similar to previous best
## Run 304 stress 0.03501044
## ... Procrustes: rmse 6.782667e-05 max resid 0.0001525133
## ... Similar to previous best
## Run 305 stress 0.03501043
## ... Procrustes: rmse 4.292964e-05 max resid 8.099995e-05
## ... Similar to previous best
## Run 306 stress 0.03635601
## Run 307 stress 0.09815918
## Run 308 stress 0.03501044
## ... Procrustes: rmse 8.262984e-05 max resid 0.0001664703
## ... Similar to previous best
## Run 309 stress 0.04319061
## Run 310 stress 0.2510632
## Run 311 stress 0.2775576
## Run 312 stress 0.03501046
## ... Procrustes: rmse 0.0001228263 max resid 0.0002601721
## ... Similar to previous best
## Run 313 stress 0.04319061
## Run 314 stress 0.036356
## Run 315 stress 0.03501043
## ... Procrustes: rmse 4.119692e-05 max resid 9.005424e-05
## ... Similar to previous best
## Run 316 stress 0.03501047
## ... Procrustes: rmse 0.0001270687 max resid 0.0002713193
## ... Similar to previous best
## Run 317 stress 0.2529753
## Run 318 stress 0.04319061
## Run 319 stress 0.04319061
## Run 320 stress 0.2852153
## Run 321 stress 0.03635608
## Run 322 stress 0.03501045
## ... Procrustes: rmse 9.815871e-05 max resid 0.0001990013
## ... Similar to previous best
## Run 323 stress 0.04319061
## Run 324 stress 0.09815918
## Run 325 stress 0.03501045
## ... Procrustes: rmse 0.0001057061 max resid 0.0002271482
## ... Similar to previous best
## Run 326 stress 0.09269266
## Run 327 stress 0.04319061
## Run 328 stress 0.04319061
## Run 329 stress 0.2754895
## Run 330 stress 0.09815918
## Run 331 stress 0.04319061
## Run 332 stress 0.04319061
## Run 333 stress 0.03501043
## ... Procrustes: rmse 4.377471e-05 max resid 9.85577e-05
## ... Similar to previous best
## Run 334 stress 0.04319061
## Run 335 stress 0.09269264
## Run 336 stress 0.03501043
## ... Procrustes: rmse 5.06674e-05 max resid 0.0001108225
## ... Similar to previous best
## Run 337 stress 0.03501043
## ... Procrustes: rmse 4.90025e-05 max resid 0.0001072211
## ... Similar to previous best
## Run 338 stress 0.04319061
## Run 339 stress 0.2136001
## Run 340 stress 0.04319061
## Run 341 stress 0.04319061
## Run 342 stress 0.04319061
## Run 343 stress 0.2538018
## Run 344 stress 0.09815918
## Run 345 stress 0.03501044
## ... Procrustes: rmse 2.486938e-05 max resid 4.555464e-05
## ... Similar to previous best
## Run 346 stress 0.04319061
## Run 347 stress 0.04319061
## Run 348 stress 0.03501047
## ... Procrustes: rmse 0.0001316436 max resid 0.0002698554
## ... Similar to previous best
## Run 349 stress 0.03635602
## Run 350 stress 0.04319061
## Run 351 stress 0.04319061
## Run 352 stress 0.04319061
## Run 353 stress 0.2520602
## Run 354 stress 0.2842805
## Run 355 stress 0.09269265
## Run 356 stress 0.04319061
## Run 357 stress 0.04319061
## Run 358 stress 0.03635608
## Run 359 stress 0.3083098
## Run 360 stress 0.03501048
## ... Procrustes: rmse 0.0001566424 max resid 0.0003224253
## ... Similar to previous best
## Run 361 stress 0.04319061
## Run 362 stress 0.04319061
## Run 363 stress 0.04319061
## Run 364 stress 0.03635608
## Run 365 stress 0.03635609
## Run 366 stress 0.09269265
## Run 367 stress 0.04319061
## Run 368 stress 0.03635602
## Run 369 stress 0.04319061
## Run 370 stress 0.03635601
## Run 371 stress 0.2809268
## Run 372 stress 0.09269269
## Run 373 stress 0.03635609
## Run 374 stress 0.09815919
## Run 375 stress 0.04319061
## Run 376 stress 0.04319061
## Run 377 stress 0.03635601
## Run 378 stress 0.04319061
## Run 379 stress 0.09815918
## Run 380 stress 0.09269264
## Run 381 stress 0.04319061
## Run 382 stress 0.03501044
## ... Procrustes: rmse 7.070254e-05 max resid 0.0001517734
## ... Similar to previous best
## Run 383 stress 0.03501048
## ... Procrustes: rmse 0.0001425967 max resid 0.0003043047
## ... Similar to previous best
## Run 384 stress 0.04319061
## Run 385 stress 0.036356
## Run 386 stress 0.2538018
## Run 387 stress 0.09269266
## Run 388 stress 0.03501048
## ... Procrustes: rmse 0.0001271382 max resid 0.0002703806
## ... Similar to previous best
## Run 389 stress 0.03635601
## Run 390 stress 0.04319061
## Run 391 stress 0.04319061
## Run 392 stress 0.04319061
## Run 393 stress 0.04319061
## Run 394 stress 0.03501042
## ... Procrustes: rmse 2.085454e-05 max resid 4.768567e-05
## ... Similar to previous best
## Run 395 stress 0.04319061
## Run 396 stress 0.03501048
## ... Procrustes: rmse 0.0001569951 max resid 0.0003231764
## ... Similar to previous best
## Run 397 stress 0.04319061
## Run 398 stress 0.04319061
## Run 399 stress 0.2233234
## Run 400 stress 0.2646972
## Run 401 stress 0.0350105
## ... Procrustes: rmse 0.0001814337 max resid 0.0003745103
## ... Similar to previous best
## Run 402 stress 0.03501044
## ... Procrustes: rmse 7.141439e-05 max resid 0.0001565755
## ... Similar to previous best
## Run 403 stress 0.04319061
## Run 404 stress 0.2852164
## Run 405 stress 0.04319061
## Run 406 stress 0.04319061
## Run 407 stress 0.03501054
## ... Procrustes: rmse 0.0002060033 max resid 0.0004256357
## ... Similar to previous best
## Run 408 stress 0.04319061
## Run 409 stress 0.03635601
## Run 410 stress 0.03501043
## ... Procrustes: rmse 2.682207e-05 max resid 6.055095e-05
## ... Similar to previous best
## Run 411 stress 0.2136001
## Run 412 stress 0.03635608
## Run 413 stress 0.03635602
## Run 414 stress 0.03501043
## ... Procrustes: rmse 3.562607e-05 max resid 7.95033e-05
## ... Similar to previous best
## Run 415 stress 0.03635606
## Run 416 stress 0.04319061
## Run 417 stress 0.04319061
## Run 418 stress 0.04319061
## Run 419 stress 0.04319061
## Run 420 stress 0.275539
## Run 421 stress 0.09269264
## Run 422 stress 0.03501049
## ... Procrustes: rmse 0.0001666255 max resid 0.000359075
## ... Similar to previous best
## Run 423 stress 0.04319061
## Run 424 stress 0.3083098
## Run 425 stress 0.04319061
## Run 426 stress 0.036356
## Run 427 stress 0.036356
## Run 428 stress 0.04319061
## Run 429 stress 0.03501048
## ... Procrustes: rmse 0.0001453524 max resid 0.0003104537
## ... Similar to previous best
## Run 430 stress 0.248806
## Run 431 stress 0.036356
## Run 432 stress 0.04319061
## Run 433 stress 0.03635606
## Run 434 stress 0.2848524
## Run 435 stress 0.307627
## Run 436 stress 0.04319061
## Run 437 stress 0.04319061
## Run 438 stress 0.04319061
## Run 439 stress 0.09269267
## Run 440 stress 0.04319061
## Run 441 stress 0.03635605
## Run 442 stress 0.04319061
## Run 443 stress 0.09815918
## Run 444 stress 0.03501043
## ... Procrustes: rmse 5.451807e-05 max resid 0.0001194316
## ... Similar to previous best
## Run 445 stress 0.03501043
## ... Procrustes: rmse 5.406532e-05 max resid 0.0001177602
## ... Similar to previous best
## Run 446 stress 0.03501047
## ... Procrustes: rmse 0.0001293461 max resid 0.000280983
## ... Similar to previous best
## Run 447 stress 0.03635599
## Run 448 stress 0.0350105
## ... Procrustes: rmse 0.0001722491 max resid 0.0003693096
## ... Similar to previous best
## Run 449 stress 0.04319061
## Run 450 stress 0.03501043
## ... Procrustes: rmse 3.298071e-05 max resid 7.419126e-05
## ... Similar to previous best
## Run 451 stress 0.03501046
## ... Procrustes: rmse 0.0001178729 max resid 0.0002589419
## ... Similar to previous best
## Run 452 stress 0.03501048
## ... Procrustes: rmse 0.0001499288 max resid 0.0003189551
## ... Similar to previous best
## Run 453 stress 0.04319061
## Run 454 stress 0.03635602
## Run 455 stress 0.248806
## Run 456 stress 0.03501043
## ... Procrustes: rmse 3.410779e-05 max resid 7.636095e-05
## ... Similar to previous best
## Run 457 stress 0.04319061
## Run 458 stress 0.04319061
## Run 459 stress 0.04319061
## Run 460 stress 0.2478961
## Run 461 stress 0.03635603
## Run 462 stress 0.04319061
## Run 463 stress 0.2842805
## Run 464 stress 0.03635606
## Run 465 stress 0.03635603
## Run 466 stress 0.03501043
## ... Procrustes: rmse 5.215339e-05 max resid 0.0001145173
## ... Similar to previous best
## Run 467 stress 0.2478961
## Run 468 stress 0.04319061
## Run 469 stress 0.03635606
## Run 470 stress 0.04319061
## Run 471 stress 0.04319061
## Run 472 stress 0.04319061
## Run 473 stress 0.03501044
## ... Procrustes: rmse 6.841948e-05 max resid 0.000147918
## ... Similar to previous best
## Run 474 stress 0.03501044
## ... Procrustes: rmse 7.903334e-05 max resid 0.0001712696
## ... Similar to previous best
## Run 475 stress 0.2136001
## Run 476 stress 0.04319061
## Run 477 stress 0.2848516
## Run 478 stress 0.03501044
## ... Procrustes: rmse 7.480763e-05 max resid 0.0001615267
## ... Similar to previous best
## Run 479 stress 0.03635605
## Run 480 stress 0.09269265
## Run 481 stress 0.03501043
## ... Procrustes: rmse 4.102447e-05 max resid 9.247398e-05
## ... Similar to previous best
## Run 482 stress 0.04319061
## Run 483 stress 0.3083098
## Run 484 stress 0.04319061
## Run 485 stress 0.03635601
## Run 486 stress 0.03501046
## ... Procrustes: rmse 0.0001214243 max resid 0.0002501435
## ... Similar to previous best
## Run 487 stress 0.03501048
## ... Procrustes: rmse 0.0001518842 max resid 0.0003123806
## ... Similar to previous best
## Run 488 stress 0.04319061
## Run 489 stress 0.04319061
## Run 490 stress 0.04319061
## Run 491 stress 0.036356
## Run 492 stress 0.03635608
## Run 493 stress 0.04319061
## Run 494 stress 0.03501048
## ... Procrustes: rmse 0.000158258 max resid 0.0003257683
## ... Similar to previous best
## Run 495 stress 0.03501042
## ... New best solution
## ... Procrustes: rmse 1.351217e-05 max resid 1.975856e-05
## ... Similar to previous best
## Run 496 stress 0.03635604
## Run 497 stress 0.3120129
## Run 498 stress 0.285216
## Run 499 stress 0.2532191
## Run 500 stress 0.2852167
## *** Best solution repeated 1 times### Environmental
# All sites
fde_NMDS <- metaMDS(fde_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.03296713
## Run 1 stress 0.03296713
## ... Procrustes: rmse 1.907549e-05 max resid 4.00218e-05
## ... Similar to previous best
## Run 2 stress 0.03724044
## Run 3 stress 0.03296715
## ... Procrustes: rmse 1.141914e-05 max resid 2.953158e-05
## ... Similar to previous best
## Run 4 stress 0.03422101
## Run 5 stress 0.03422105
## Run 6 stress 0.03296713
## ... New best solution
## ... Procrustes: rmse 5.261017e-06 max resid 1.73118e-05
## ... Similar to previous best
## Run 7 stress 0.03708306
## Run 8 stress 0.034221
## Run 9 stress 0.03708304
## Run 10 stress 0.03443753
## Run 11 stress 0.03564251
## Run 12 stress 0.03480971
## Run 13 stress 0.03484036
## Run 14 stress 0.03545238
## Run 15 stress 0.03724044
## Run 16 stress 0.03708308
## Run 17 stress 0.03296713
## ... Procrustes: rmse 3.830453e-06 max resid 7.708666e-06
## ... Similar to previous best
## Run 18 stress 0.03545235
## Run 19 stress 0.03422103
## Run 20 stress 0.03443743
## Run 21 stress 0.034221
## Run 22 stress 0.03564254
## Run 23 stress 0.03422102
## Run 24 stress 0.03545237
## Run 25 stress 0.03545244
## Run 26 stress 0.03443744
## Run 27 stress 0.03724055
## Run 28 stress 0.03724045
## Run 29 stress 0.03296714
## ... Procrustes: rmse 9.710681e-06 max resid 2.72518e-05
## ... Similar to previous best
## Run 30 stress 0.03296713
## ... Procrustes: rmse 7.774316e-06 max resid 2.291805e-05
## ... Similar to previous best
## Run 31 stress 0.03296714
## ... Procrustes: rmse 2.385951e-05 max resid 8.604418e-05
## ... Similar to previous best
## Run 32 stress 0.03296714
## ... Procrustes: rmse 1.767947e-05 max resid 3.798646e-05
## ... Similar to previous best
## Run 33 stress 0.03480971
## Run 34 stress 0.03545235
## Run 35 stress 0.03423183
## Run 36 stress 0.03296713
## ... Procrustes: rmse 7.346113e-06 max resid 1.556303e-05
## ... Similar to previous best
## Run 37 stress 0.03484036
## Run 38 stress 0.3652987
## Run 39 stress 0.03443755
## Run 40 stress 0.03296713
## ... Procrustes: rmse 5.360139e-06 max resid 1.761849e-05
## ... Similar to previous best
## Run 41 stress 0.03708302
## Run 42 stress 0.03724052
## Run 43 stress 0.03708301
## Run 44 stress 0.03708303
## Run 45 stress 0.03544947
## Run 46 stress 0.0354495
## Run 47 stress 0.03296713
## ... Procrustes: rmse 8.560616e-06 max resid 2.09116e-05
## ... Similar to previous best
## Run 48 stress 0.03708303
## Run 49 stress 0.03422107
## Run 50 stress 0.03544951
## Run 51 stress 0.03423183
## Run 52 stress 0.03480972
## Run 53 stress 0.03427828
## Run 54 stress 0.03480971
## Run 55 stress 0.03296713
## ... Procrustes: rmse 8.138829e-06 max resid 2.921585e-05
## ... Similar to previous best
## Run 56 stress 0.03545244
## Run 57 stress 0.03422276
## Run 58 stress 0.03544948
## Run 59 stress 0.03480973
## Run 60 stress 0.03564256
## Run 61 stress 0.03443758
## Run 62 stress 0.03545242
## Run 63 stress 0.03564252
## Run 64 stress 0.03708294
## Run 65 stress 0.03443746
## Run 66 stress 0.03423188
## Run 67 stress 0.03427828
## Run 68 stress 0.03480971
## Run 69 stress 0.03724048
## Run 70 stress 0.03564252
## Run 71 stress 0.03423183
## Run 72 stress 0.03545235
## Run 73 stress 0.03427828
## Run 74 stress 0.03724052
## Run 75 stress 0.03296714
## ... Procrustes: rmse 2.353005e-05 max resid 8.596168e-05
## ... Similar to previous best
## Run 76 stress 0.03708307
## Run 77 stress 0.034221
## Run 78 stress 0.2235732
## Run 79 stress 0.0342211
## Run 80 stress 0.0356425
## Run 81 stress 0.03545241
## Run 82 stress 0.03296713
## ... Procrustes: rmse 4.206386e-06 max resid 1.349224e-05
## ... Similar to previous best
## Run 83 stress 0.03296713
## ... Procrustes: rmse 2.94246e-06 max resid 5.906829e-06
## ... Similar to previous best
## Run 84 stress 0.03296714
## ... Procrustes: rmse 2.798693e-05 max resid 0.0001022342
## ... Similar to previous best
## Run 85 stress 0.03564252
## Run 86 stress 0.2235948
## Run 87 stress 0.03480972
## Run 88 stress 0.03427828
## Run 89 stress 0.03724063
## Run 90 stress 0.03724049
## Run 91 stress 0.03545239
## Run 92 stress 0.0356425
## Run 93 stress 0.03296713
## ... Procrustes: rmse 1.042345e-05 max resid 3.780576e-05
## ... Similar to previous best
## Run 94 stress 0.03296713
## ... Procrustes: rmse 1.168155e-05 max resid 4.313536e-05
## ... Similar to previous best
## Run 95 stress 0.03423184
## Run 96 stress 0.03564253
## Run 97 stress 0.03423183
## Run 98 stress 0.03724051
## Run 99 stress 0.03480974
## Run 100 stress 0.03427828
## Run 101 stress 0.03296713
## ... Procrustes: rmse 9.168161e-06 max resid 3.213885e-05
## ... Similar to previous best
## Run 102 stress 0.03296713
## ... Procrustes: rmse 7.586881e-06 max resid 2.703726e-05
## ... Similar to previous best
## Run 103 stress 0.03296713
## ... Procrustes: rmse 5.818605e-06 max resid 1.318908e-05
## ... Similar to previous best
## Run 104 stress 0.03708306
## Run 105 stress 0.03724058
## Run 106 stress 0.03422094
## Run 107 stress 0.03443731
## Run 108 stress 0.03422102
## Run 109 stress 0.03427828
## Run 110 stress 0.03296713
## ... Procrustes: rmse 9.580146e-06 max resid 1.716584e-05
## ... Similar to previous best
## Run 111 stress 0.03423183
## Run 112 stress 0.03480974
## Run 113 stress 0.03724063
## Run 114 stress 0.03564252
## Run 115 stress 0.03296713
## ... Procrustes: rmse 1.017575e-05 max resid 3.710206e-05
## ... Similar to previous best
## Run 116 stress 0.03564257
## Run 117 stress 0.2235948
## Run 118 stress 0.03422099
## Run 119 stress 0.03480972
## Run 120 stress 0.03708305
## Run 121 stress 0.03422096
## Run 122 stress 0.03564251
## Run 123 stress 0.03564256
## Run 124 stress 0.03296714
## ... Procrustes: rmse 3.062309e-05 max resid 0.0001130777
## ... Similar to previous best
## Run 125 stress 0.03423191
## Run 126 stress 0.2235814
## Run 127 stress 0.03443757
## Run 128 stress 0.0342211
## Run 129 stress 0.03724054
## Run 130 stress 0.03296713
## ... Procrustes: rmse 8.738582e-06 max resid 3.203333e-05
## ... Similar to previous best
## Run 131 stress 0.03564251
## Run 132 stress 0.03296713
## ... Procrustes: rmse 7.421685e-06 max resid 1.729075e-05
## ... Similar to previous best
## Run 133 stress 0.03427828
## Run 134 stress 0.03724051
## Run 135 stress 0.03427828
## Run 136 stress 0.03296713
## ... New best solution
## ... Procrustes: rmse 3.948265e-06 max resid 8.241697e-06
## ... Similar to previous best
## Run 137 stress 0.03443756
## Run 138 stress 0.03422097
## Run 139 stress 0.03480973
## Run 140 stress 0.03443748
## Run 141 stress 0.03545237
## Run 142 stress 0.03545243
## Run 143 stress 0.03423183
## Run 144 stress 0.03296713
## ... Procrustes: rmse 1.111833e-05 max resid 4.210203e-05
## ... Similar to previous best
## Run 145 stress 0.03545237
## Run 146 stress 0.03427828
## Run 147 stress 0.03296713
## ... Procrustes: rmse 1.512847e-05 max resid 4.955413e-05
## ... Similar to previous best
## Run 148 stress 0.03423184
## Run 149 stress 0.03708305
## Run 150 stress 0.03443759
## Run 151 stress 0.03544946
## Run 152 stress 0.03484036
## Run 153 stress 0.03423184
## Run 154 stress 0.03422102
## Run 155 stress 0.03480971
## Run 156 stress 0.03545241
## Run 157 stress 0.03423184
## Run 158 stress 0.03423184
## Run 159 stress 0.03423183
## Run 160 stress 0.03545242
## Run 161 stress 0.0372405
## Run 162 stress 0.03427829
## Run 163 stress 0.03480972
## Run 164 stress 0.03564253
## Run 165 stress 0.03724056
## Run 166 stress 0.0372853
## Run 167 stress 0.03296713
## ... Procrustes: rmse 9.920852e-06 max resid 3.399849e-05
## ... Similar to previous best
## Run 168 stress 0.03545237
## Run 169 stress 0.03545239
## Run 170 stress 0.03480973
## Run 171 stress 0.03296713
## ... Procrustes: rmse 7.002684e-06 max resid 2.528511e-05
## ... Similar to previous best
## Run 172 stress 0.03545239
## Run 173 stress 0.03708306
## Run 174 stress 0.03708305
## Run 175 stress 0.03708308
## Run 176 stress 0.03423051
## Run 177 stress 0.03423183
## Run 178 stress 0.03423193
## Run 179 stress 0.03545236
## Run 180 stress 0.03564252
## Run 181 stress 0.03708301
## Run 182 stress 0.03422105
## Run 183 stress 0.03564253
## Run 184 stress 0.03422104
## Run 185 stress 0.03423183
## Run 186 stress 0.03484036
## Run 187 stress 0.03427828
## Run 188 stress 0.03296713
## ... Procrustes: rmse 1.06261e-05 max resid 2.749804e-05
## ... Similar to previous best
## Run 189 stress 0.03484039
## Run 190 stress 0.03443727
## Run 191 stress 0.03424059
## Run 192 stress 0.037083
## Run 193 stress 0.03422098
## Run 194 stress 0.03564251
## Run 195 stress 0.03545235
## Run 196 stress 0.03296713
## ... Procrustes: rmse 1.401644e-05 max resid 5.057487e-05
## ... Similar to previous best
## Run 197 stress 0.03423184
## Run 198 stress 0.03564251
## Run 199 stress 0.03296713
## ... Procrustes: rmse 5.878955e-06 max resid 1.87326e-05
## ... Similar to previous best
## Run 200 stress 0.03484039
## Run 201 stress 0.03422099
## Run 202 stress 0.03708306
## Run 203 stress 0.03484036
## Run 204 stress 0.03422095
## Run 205 stress 0.037083
## Run 206 stress 0.03443749
## Run 207 stress 0.03545241
## Run 208 stress 0.03708312
## Run 209 stress 0.03545237
## Run 210 stress 0.03545235
## Run 211 stress 0.03422107
## Run 212 stress 0.03296714
## ... Procrustes: rmse 7.678267e-06 max resid 2.298648e-05
## ... Similar to previous best
## Run 213 stress 0.03443757
## Run 214 stress 0.03545242
## Run 215 stress 0.03422097
## Run 216 stress 0.03423184
## Run 217 stress 0.03443763
## Run 218 stress 0.03480971
## Run 219 stress 0.03422099
## Run 220 stress 0.03564251
## Run 221 stress 0.03708294
## Run 222 stress 0.03443748
## Run 223 stress 0.03423183
## Run 224 stress 0.03480971
## Run 225 stress 0.03422106
## Run 226 stress 0.03423194
## Run 227 stress 0.03724053
## Run 228 stress 0.03296714
## ... Procrustes: rmse 7.21663e-06 max resid 2.002305e-05
## ... Similar to previous best
## Run 229 stress 0.03484038
## Run 230 stress 0.03708305
## Run 231 stress 0.03484039
## Run 232 stress 0.03296713
## ... Procrustes: rmse 3.738838e-06 max resid 1.325509e-05
## ... Similar to previous best
## Run 233 stress 0.03427828
## Run 234 stress 0.03422102
## Run 235 stress 0.03427828
## Run 236 stress 0.03427828
## Run 237 stress 0.03296713
## ... Procrustes: rmse 5.657311e-06 max resid 1.333182e-05
## ... Similar to previous best
## Run 238 stress 0.03484038
## Run 239 stress 0.03724051
## Run 240 stress 0.03480971
## Run 241 stress 0.3698507
## Run 242 stress 0.03422099
## Run 243 stress 0.03564254
## Run 244 stress 0.03296714
## ... Procrustes: rmse 2.570388e-05 max resid 9.039962e-05
## ... Similar to previous best
## Run 245 stress 0.03443745
## Run 246 stress 0.03724057
## Run 247 stress 0.03422101
## Run 248 stress 0.03708299
## Run 249 stress 0.03422102
## Run 250 stress 0.03708307
## Run 251 stress 0.03564254
## Run 252 stress 0.03724057
## Run 253 stress 0.03296713
## ... Procrustes: rmse 5.369672e-06 max resid 1.144834e-05
## ... Similar to previous best
## Run 254 stress 0.03427829
## Run 255 stress 0.3744253
## Run 256 stress 0.03296713
## ... Procrustes: rmse 1.080954e-05 max resid 3.955717e-05
## ... Similar to previous best
## Run 257 stress 0.03545239
## Run 258 stress 0.03423184
## Run 259 stress 0.03422105
## Run 260 stress 0.03443729
## Run 261 stress 0.03422105
## Run 262 stress 0.0356425
## Run 263 stress 0.03296713
## ... Procrustes: rmse 7.302044e-06 max resid 2.390337e-05
## ... Similar to previous best
## Run 264 stress 0.0354524
## Run 265 stress 0.03296713
## ... Procrustes: rmse 6.237813e-06 max resid 1.138358e-05
## ... Similar to previous best
## Run 266 stress 0.03296713
## ... Procrustes: rmse 1.02732e-05 max resid 3.881942e-05
## ... Similar to previous best
## Run 267 stress 0.03564252
## Run 268 stress 0.03564251
## Run 269 stress 0.03296713
## ... Procrustes: rmse 2.102512e-05 max resid 7.468904e-05
## ... Similar to previous best
## Run 270 stress 0.03296714
## ... Procrustes: rmse 9.223653e-06 max resid 1.430425e-05
## ... Similar to previous best
## Run 271 stress 0.03422104
## Run 272 stress 0.03296714
## ... Procrustes: rmse 3.002894e-05 max resid 0.0001077277
## ... Similar to previous best
## Run 273 stress 0.0342406
## Run 274 stress 0.03564251
## Run 275 stress 0.03724056
## Run 276 stress 0.03480971
## Run 277 stress 0.0356425
## Run 278 stress 0.03480972
## Run 279 stress 0.034221
## Run 280 stress 0.03427828
## Run 281 stress 0.03708296
## Run 282 stress 0.03427828
## Run 283 stress 0.03708306
## Run 284 stress 0.03296714
## ... Procrustes: rmse 2.287885e-05 max resid 4.475796e-05
## ... Similar to previous best
## Run 285 stress 0.03484037
## Run 286 stress 0.03724051
## Run 287 stress 0.03422107
## Run 288 stress 0.03545236
## Run 289 stress 0.03296714
## ... Procrustes: rmse 2.931829e-05 max resid 0.0001047991
## ... Similar to previous best
## Run 290 stress 0.03480971
## Run 291 stress 0.03296713
## ... Procrustes: rmse 2.125755e-05 max resid 7.741744e-05
## ... Similar to previous best
## Run 292 stress 0.03296713
## ... Procrustes: rmse 5.610033e-06 max resid 1.160889e-05
## ... Similar to previous best
## Run 293 stress 0.03708294
## Run 294 stress 0.03427828
## Run 295 stress 0.03427828
## Run 296 stress 0.03708295
## Run 297 stress 0.03296713
## ... Procrustes: rmse 1.482107e-05 max resid 2.564079e-05
## ... Similar to previous best
## Run 298 stress 0.03564251
## Run 299 stress 0.03422094
## Run 300 stress 0.03545247
## Run 301 stress 0.0356425
## Run 302 stress 0.03724052
## Run 303 stress 0.03427828
## Run 304 stress 0.03296713
## ... Procrustes: rmse 1.505478e-05 max resid 5.509999e-05
## ... Similar to previous best
## Run 305 stress 0.0356425
## Run 306 stress 0.03564253
## Run 307 stress 0.03564251
## Run 308 stress 0.03708307
## Run 309 stress 0.03564257
## Run 310 stress 0.03724058
## Run 311 stress 0.03724052
## Run 312 stress 0.03427828
## Run 313 stress 0.03296713
## ... Procrustes: rmse 1.204038e-05 max resid 3.166404e-05
## ... Similar to previous best
## Run 314 stress 0.03724059
## Run 315 stress 0.03545239
## Run 316 stress 0.03423184
## Run 317 stress 0.03296713
## ... Procrustes: rmse 7.379693e-06 max resid 1.999756e-05
## ... Similar to previous best
## Run 318 stress 0.03564254
## Run 319 stress 0.03296713
## ... Procrustes: rmse 9.769875e-06 max resid 2.793193e-05
## ... Similar to previous best
## Run 320 stress 0.03724055
## Run 321 stress 0.03427828
## Run 322 stress 0.03484038
## Run 323 stress 0.03708305
## Run 324 stress 0.03296714
## ... Procrustes: rmse 2.073314e-05 max resid 3.709042e-05
## ... Similar to previous best
## Run 325 stress 0.0372405
## Run 326 stress 0.03564251
## Run 327 stress 0.03296713
## ... Procrustes: rmse 1.525716e-05 max resid 2.781495e-05
## ... Similar to previous best
## Run 328 stress 0.03296713
## ... Procrustes: rmse 1.215961e-05 max resid 2.430928e-05
## ... Similar to previous best
## Run 329 stress 0.03708301
## Run 330 stress 0.03422105
## Run 331 stress 0.034221
## Run 332 stress 0.03296713
## ... New best solution
## ... Procrustes: rmse 1.861136e-06 max resid 3.620217e-06
## ... Similar to previous best
## Run 333 stress 0.03296713
## ... Procrustes: rmse 1.587195e-05 max resid 5.842815e-05
## ... Similar to previous best
## Run 334 stress 0.03708296
## Run 335 stress 0.03443747
## Run 336 stress 0.03545239
## Run 337 stress 0.03564253
## Run 338 stress 0.0354495
## Run 339 stress 0.03564253
## Run 340 stress 0.03296713
## ... New best solution
## ... Procrustes: rmse 2.30966e-06 max resid 5.64709e-06
## ... Similar to previous best
## Run 341 stress 0.03296714
## ... Procrustes: rmse 3.297738e-05 max resid 0.000114789
## ... Similar to previous best
## Run 342 stress 0.03443759
## Run 343 stress 0.03708295
## Run 344 stress 0.03423184
## Run 345 stress 0.03427828
## Run 346 stress 0.03422094
## Run 347 stress 0.03296713
## ... Procrustes: rmse 9.891999e-06 max resid 3.640008e-05
## ... Similar to previous best
## Run 348 stress 0.03564252
## Run 349 stress 0.03544947
## Run 350 stress 0.03296714
## ... Procrustes: rmse 2.449066e-05 max resid 8.783924e-05
## ... Similar to previous best
## Run 351 stress 0.03296713
## ... Procrustes: rmse 4.370043e-06 max resid 1.472599e-05
## ... Similar to previous best
## Run 352 stress 0.03443731
## Run 353 stress 0.03296713
## ... Procrustes: rmse 6.016702e-06 max resid 1.711933e-05
## ... Similar to previous best
## Run 354 stress 0.03484036
## Run 355 stress 0.03296713
## ... Procrustes: rmse 1.862625e-05 max resid 6.587708e-05
## ... Similar to previous best
## Run 356 stress 0.034221
## Run 357 stress 0.0354524
## Run 358 stress 0.03296713
## ... Procrustes: rmse 1.865807e-05 max resid 6.662045e-05
## ... Similar to previous best
## Run 359 stress 0.03724058
## Run 360 stress 0.03544949
## Run 361 stress 0.03545235
## Run 362 stress 0.0372405
## Run 363 stress 0.03724053
## Run 364 stress 0.03296714
## ... Procrustes: rmse 1.961776e-05 max resid 6.880823e-05
## ... Similar to previous best
## Run 365 stress 0.03296713
## ... Procrustes: rmse 1.669315e-05 max resid 5.960795e-05
## ... Similar to previous best
## Run 366 stress 0.03443763
## Run 367 stress 0.03564254
## Run 368 stress 0.03443735
## Run 369 stress 0.03427828
## Run 370 stress 0.03296713
## ... Procrustes: rmse 3.689836e-06 max resid 1.128596e-05
## ... Similar to previous best
## Run 371 stress 0.034221
## Run 372 stress 0.03296713
## ... Procrustes: rmse 1.024774e-05 max resid 3.748057e-05
## ... Similar to previous best
## Run 373 stress 0.2235948
## Run 374 stress 0.03422103
## Run 375 stress 0.03708302
## Run 376 stress 0.03724056
## Run 377 stress 0.0354524
## Run 378 stress 0.03443745
## Run 379 stress 0.03564254
## Run 380 stress 0.03296713
## ... Procrustes: rmse 7.808232e-06 max resid 2.817177e-05
## ... Similar to previous best
## Run 381 stress 0.03480972
## Run 382 stress 0.03296713
## ... Procrustes: rmse 1.131394e-05 max resid 3.728231e-05
## ... Similar to previous best
## Run 383 stress 0.03443763
## Run 384 stress 0.0356425
## Run 385 stress 0.03423183
## Run 386 stress 0.03443765
## Run 387 stress 0.03480971
## Run 388 stress 0.03544948
## Run 389 stress 0.03296713
## ... Procrustes: rmse 1.080992e-05 max resid 2.368229e-05
## ... Similar to previous best
## Run 390 stress 0.03564251
## Run 391 stress 0.03443761
## Run 392 stress 0.03545236
## Run 393 stress 0.03484038
## Run 394 stress 0.03708303
## Run 395 stress 0.03724051
## Run 396 stress 0.03296713
## ... Procrustes: rmse 2.991751e-06 max resid 5.909905e-06
## ... Similar to previous best
## Run 397 stress 0.03564251
## Run 398 stress 0.03480972
## Run 399 stress 0.03427828
## Run 400 stress 0.03724058
## Run 401 stress 0.03564252
## Run 402 stress 0.03480971
## Run 403 stress 0.03708299
## Run 404 stress 0.03423183
## Run 405 stress 0.03480971
## Run 406 stress 0.03564252
## Run 407 stress 0.0356425
## Run 408 stress 0.03427828
## Run 409 stress 0.03724054
## Run 410 stress 0.03422104
## Run 411 stress 0.03724055
## Run 412 stress 0.03296713
## ... Procrustes: rmse 8.346184e-06 max resid 3.024615e-05
## ... Similar to previous best
## Run 413 stress 0.03484038
## Run 414 stress 0.03296713
## ... Procrustes: rmse 1.552546e-06 max resid 3.400919e-06
## ... Similar to previous best
## Run 415 stress 0.03564251
## Run 416 stress 0.03422096
## Run 417 stress 0.03708302
## Run 418 stress 0.03724059
## Run 419 stress 0.03427828
## Run 420 stress 0.03708303
## Run 421 stress 0.03296713
## ... Procrustes: rmse 2.065872e-05 max resid 7.524794e-05
## ... Similar to previous best
## Run 422 stress 0.03443762
## Run 423 stress 0.03427828
## Run 424 stress 0.03708295
## Run 425 stress 0.03427828
## Run 426 stress 0.03564256
## Run 427 stress 0.03424023
## Run 428 stress 0.03708295
## Run 429 stress 0.03443743
## Run 430 stress 0.03296714
## ... Procrustes: rmse 3.160772e-05 max resid 0.0001104997
## ... Similar to previous best
## Run 431 stress 0.03545242
## Run 432 stress 0.03427828
## Run 433 stress 0.03545238
## Run 434 stress 0.03544949
## Run 435 stress 0.03724057
## Run 436 stress 0.0354524
## Run 437 stress 0.03484039
## Run 438 stress 0.03296713
## ... Procrustes: rmse 2.108803e-05 max resid 7.787488e-05
## ... Similar to previous best
## Run 439 stress 0.03296714
## ... Procrustes: rmse 3.588992e-05 max resid 0.0001295463
## ... Similar to previous best
## Run 440 stress 0.03564252
## Run 441 stress 0.0354495
## Run 442 stress 0.03564251
## Run 443 stress 0.3744249
## Run 444 stress 0.03443751
## Run 445 stress 0.03708301
## Run 446 stress 0.03724048
## Run 447 stress 0.03296713
## ... Procrustes: rmse 1.812103e-05 max resid 6.685008e-05
## ... Similar to previous best
## Run 448 stress 0.03708306
## Run 449 stress 0.03427829
## Run 450 stress 0.03564255
## Run 451 stress 0.03427828
## Run 452 stress 0.03296713
## ... Procrustes: rmse 1.606404e-06 max resid 3.196574e-06
## ... Similar to previous best
## Run 453 stress 0.03296713
## ... Procrustes: rmse 9.771685e-06 max resid 2.689528e-05
## ... Similar to previous best
## Run 454 stress 0.03296713
## ... Procrustes: rmse 3.600051e-06 max resid 1.209361e-05
## ... Similar to previous best
## Run 455 stress 0.03545236
## Run 456 stress 0.2234926
## Run 457 stress 0.03480971
## Run 458 stress 0.03427828
## Run 459 stress 0.03545243
## Run 460 stress 0.03708304
## Run 461 stress 0.03544948
## Run 462 stress 0.03422104
## Run 463 stress 0.03564255
## Run 464 stress 0.03724053
## Run 465 stress 0.03443758
## Run 466 stress 0.03422102
## Run 467 stress 0.03422093
## Run 468 stress 0.03422097
## Run 469 stress 0.03296713
## ... Procrustes: rmse 1.309563e-05 max resid 4.735727e-05
## ... Similar to previous best
## Run 470 stress 0.03422097
## Run 471 stress 0.03423183
## Run 472 stress 0.03480972
## Run 473 stress 0.03296713
## ... Procrustes: rmse 3.733751e-06 max resid 1.235055e-05
## ... Similar to previous best
## Run 474 stress 0.03296713
## ... Procrustes: rmse 8.216041e-06 max resid 2.789103e-05
## ... Similar to previous best
## Run 475 stress 0.03427828
## Run 476 stress 0.03296713
## ... Procrustes: rmse 2.196338e-05 max resid 7.980179e-05
## ... Similar to previous best
## Run 477 stress 0.03427828
## Run 478 stress 0.03708304
## Run 479 stress 0.03423183
## Run 480 stress 0.03423183
## Run 481 stress 0.0354524
## Run 482 stress 0.03422096
## Run 483 stress 0.03296713
## ... Procrustes: rmse 1.97447e-05 max resid 7.061356e-05
## ... Similar to previous best
## Run 484 stress 0.03724053
## Run 485 stress 0.03724057
## Run 486 stress 0.03724045
## Run 487 stress 0.03724062
## Run 488 stress 0.03423183
## Run 489 stress 0.03724058
## Run 490 stress 0.03545243
## Run 491 stress 0.03724053
## Run 492 stress 0.03296713
## ... Procrustes: rmse 7.767999e-06 max resid 1.869961e-05
## ... Similar to previous best
## Run 493 stress 0.03296713
## ... Procrustes: rmse 1.456867e-05 max resid 2.758723e-05
## ... Similar to previous best
## Run 494 stress 0.03708301
## Run 495 stress 0.03545236
## Run 496 stress 0.03724045
## Run 497 stress 0.03296713
## ... Procrustes: rmse 8.451887e-06 max resid 3.030828e-05
## ... Similar to previous best
## Run 498 stress 0.03422095
## Run 499 stress 0.03724048
## Run 500 stress 0.03564256
## *** Best solution repeated 34 times# Mixed and stratified lakes
fdems_NMDS <- metaMDS(fdems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.0297451
## Run 1 stress 0.03035653
## Run 2 stress 0.03035657
## Run 3 stress 0.07130439
## Run 4 stress 0.07130359
## Run 5 stress 0.03160269
## Run 6 stress 0.03035657
## Run 7 stress 0.02397855
## ... New best solution
## ... Procrustes: rmse 0.05173291 max resid 0.1309479
## Run 8 stress 0.02399582
## ... Procrustes: rmse 0.001304689 max resid 0.003920328
## ... Similar to previous best
## Run 9 stress 0.02721662
## Run 10 stress 0.03035929
## Run 11 stress 0.0272166
## Run 12 stress 0.02975952
## Run 13 stress 0.02721658
## Run 14 stress 0.06123852
## Run 15 stress 0.02975951
## Run 16 stress 0.02975956
## Run 17 stress 0.06085665
## Run 18 stress 0.03035653
## Run 19 stress 0.02721812
## Run 20 stress 0.03035931
## Run 21 stress 0.02974512
## Run 22 stress 0.02723717
## Run 23 stress 0.02721809
## Run 24 stress 0.03035927
## Run 25 stress 0.0316293
## Run 26 stress 0.02397857
## ... Procrustes: rmse 4.769579e-05 max resid 7.957119e-05
## ... Similar to previous best
## Run 27 stress 0.02975954
## Run 28 stress 0.06134243
## Run 29 stress 0.02975952
## Run 30 stress 0.02721662
## Run 31 stress 0.0239959
## ... Procrustes: rmse 0.001283543 max resid 0.003743496
## ... Similar to previous best
## Run 32 stress 0.02397857
## ... Procrustes: rmse 4.986789e-05 max resid 8.066801e-05
## ... Similar to previous best
## Run 33 stress 0.02975954
## Run 34 stress 0.03035931
## Run 35 stress 0.03162922
## Run 36 stress 0.02975951
## Run 37 stress 0.0297451
## Run 38 stress 0.02723719
## Run 39 stress 0.03160242
## Run 40 stress 0.02974513
## Run 41 stress 0.06082268
## Run 42 stress 0.02721813
## Run 43 stress 0.02974511
## Run 44 stress 0.02721816
## Run 45 stress 0.02397856
## ... Procrustes: rmse 4.014242e-05 max resid 6.76463e-05
## ... Similar to previous best
## Run 46 stress 0.06082261
## Run 47 stress 0.0297595
## Run 48 stress 0.03035932
## Run 49 stress 0.0297595
## Run 50 stress 0.02721657
## Run 51 stress 0.02721811
## Run 52 stress 0.02975952
## Run 53 stress 0.03164964
## Run 54 stress 0.0272376
## Run 55 stress 0.02721655
## Run 56 stress 0.02975952
## Run 57 stress 0.03035927
## Run 58 stress 0.06124243
## Run 59 stress 0.06085708
## Run 60 stress 0.02974512
## Run 61 stress 0.02975953
## Run 62 stress 0.03160262
## Run 63 stress 0.02721659
## Run 64 stress 0.02975951
## Run 65 stress 0.03162198
## Run 66 stress 0.02974511
## Run 67 stress 0.0239959
## ... Procrustes: rmse 0.001331423 max resid 0.00408289
## ... Similar to previous best
## Run 68 stress 0.06748642
## Run 69 stress 0.02721663
## Run 70 stress 0.03035653
## Run 71 stress 0.02975953
## Run 72 stress 0.02974513
## Run 73 stress 0.03160263
## Run 74 stress 0.0297451
## Run 75 stress 0.07130454
## Run 76 stress 0.06128621
## Run 77 stress 0.02975951
## Run 78 stress 0.06082273
## Run 79 stress 0.06082261
## Run 80 stress 0.02721662
## Run 81 stress 0.02397863
## ... Procrustes: rmse 9.379377e-05 max resid 0.0001602513
## ... Similar to previous best
## Run 82 stress 0.03164952
## Run 83 stress 0.02721662
## Run 84 stress 0.03162904
## Run 85 stress 0.02721816
## Run 86 stress 0.03162956
## Run 87 stress 0.03035934
## Run 88 stress 0.02721817
## Run 89 stress 0.03162195
## Run 90 stress 0.03035649
## Run 91 stress 0.03035649
## Run 92 stress 0.06128627
## Run 93 stress 0.02721661
## Run 94 stress 0.06085706
## Run 95 stress 0.03035654
## Run 96 stress 0.02975951
## Run 97 stress 0.03162929
## Run 98 stress 0.02723724
## Run 99 stress 0.06082263
## Run 100 stress 0.03162911
## Run 101 stress 0.06134219
## Run 102 stress 0.06085658
## Run 103 stress 0.03164941
## Run 104 stress 0.03162199
## Run 105 stress 0.03035924
## Run 106 stress 0.02975951
## Run 107 stress 0.02721813
## Run 108 stress 0.02975951
## Run 109 stress 0.03162195
## Run 110 stress 0.06082269
## Run 111 stress 0.03035661
## Run 112 stress 0.03035928
## Run 113 stress 0.02975952
## Run 114 stress 0.0316025
## Run 115 stress 0.06127787
## Run 116 stress 0.0297451
## Run 117 stress 0.03162933
## Run 118 stress 0.02975953
## Run 119 stress 0.03162202
## Run 120 stress 0.06749076
## Run 121 stress 0.3594425
## Run 122 stress 0.02721816
## Run 123 stress 0.02975952
## Run 124 stress 0.03162908
## Run 125 stress 0.06128627
## Run 126 stress 0.03160243
## Run 127 stress 0.07130443
## Run 128 stress 0.02399583
## ... Procrustes: rmse 0.001291088 max resid 0.003820352
## ... Similar to previous best
## Run 129 stress 0.02721661
## Run 130 stress 0.02975951
## Run 131 stress 0.06127795
## Run 132 stress 0.03162915
## Run 133 stress 0.0297595
## Run 134 stress 0.03160268
## Run 135 stress 0.06082263
## Run 136 stress 0.02721656
## Run 137 stress 0.02975951
## Run 138 stress 0.03040276
## Run 139 stress 0.0297451
## Run 140 stress 0.02721813
## Run 141 stress 0.02397858
## ... Procrustes: rmse 6.694242e-05 max resid 0.0001142614
## ... Similar to previous best
## Run 142 stress 0.0303566
## Run 143 stress 0.0297451
## Run 144 stress 0.02721654
## Run 145 stress 0.02974511
## Run 146 stress 0.06082241
## Run 147 stress 0.06085712
## Run 148 stress 0.03035651
## Run 149 stress 0.02721658
## Run 150 stress 0.06082298
## Run 151 stress 0.03035654
## Run 152 stress 0.06145226
## Run 153 stress 0.03162192
## Run 154 stress 0.06134236
## Run 155 stress 0.0297451
## Run 156 stress 0.0303566
## Run 157 stress 0.03035926
## Run 158 stress 0.0272372
## Run 159 stress 0.02721809
## Run 160 stress 0.0713034
## Run 161 stress 0.0239786
## ... Procrustes: rmse 5.941197e-05 max resid 0.0001018496
## ... Similar to previous best
## Run 162 stress 0.02721657
## Run 163 stress 0.07130325
## Run 164 stress 0.03035928
## Run 165 stress 0.06128641
## Run 166 stress 0.03035929
## Run 167 stress 0.02721817
## Run 168 stress 0.02975952
## Run 169 stress 0.03035925
## Run 170 stress 0.02974512
## Run 171 stress 0.0297451
## Run 172 stress 0.0297595
## Run 173 stress 0.03162193
## Run 174 stress 0.02399587
## ... Procrustes: rmse 0.001284805 max resid 0.003756633
## ... Similar to previous best
## Run 175 stress 0.02721818
## Run 176 stress 0.03160244
## Run 177 stress 0.03164948
## Run 178 stress 0.02975954
## Run 179 stress 0.02721654
## Run 180 stress 0.02975952
## Run 181 stress 0.02399586
## ... Procrustes: rmse 0.001320904 max resid 0.004025723
## ... Similar to previous best
## Run 182 stress 0.02721809
## Run 183 stress 0.03162203
## Run 184 stress 0.06082277
## Run 185 stress 0.02974513
## Run 186 stress 0.03162189
## Run 187 stress 0.02974513
## Run 188 stress 0.0297595
## Run 189 stress 0.03035654
## Run 190 stress 0.03160266
## Run 191 stress 0.03162189
## Run 192 stress 0.03160248
## Run 193 stress 0.02399589
## ... Procrustes: rmse 0.001284844 max resid 0.003757523
## ... Similar to previous best
## Run 194 stress 0.02974511
## Run 195 stress 0.06748643
## Run 196 stress 0.03035925
## Run 197 stress 0.02974514
## Run 198 stress 0.03162944
## Run 199 stress 0.03035657
## Run 200 stress 0.0297451
## Run 201 stress 0.02723717
## Run 202 stress 0.0297451
## Run 203 stress 0.03162933
## Run 204 stress 0.0303566
## Run 205 stress 0.02721816
## Run 206 stress 0.0297451
## Run 207 stress 0.02974512
## Run 208 stress 0.02975951
## Run 209 stress 0.02975952
## Run 210 stress 0.02397856
## ... Procrustes: rmse 3.058616e-05 max resid 5.438253e-05
## ... Similar to previous best
## Run 211 stress 0.03162949
## Run 212 stress 0.0316026
## Run 213 stress 0.02975951
## Run 214 stress 0.03160255
## Run 215 stress 0.0297451
## Run 216 stress 0.02975952
## Run 217 stress 0.06128634
## Run 218 stress 0.02721809
## Run 219 stress 0.0297595
## Run 220 stress 0.03160261
## Run 221 stress 0.02723726
## Run 222 stress 0.06082269
## Run 223 stress 0.03035658
## Run 224 stress 0.02721656
## Run 225 stress 0.359111
## Run 226 stress 0.0297451
## Run 227 stress 0.02975951
## Run 228 stress 0.03160252
## Run 229 stress 0.0297451
## Run 230 stress 0.02721662
## Run 231 stress 0.02721815
## Run 232 stress 0.03035654
## Run 233 stress 0.0303565
## Run 234 stress 0.02975951
## Run 235 stress 0.06128611
## Run 236 stress 0.06749083
## Run 237 stress 0.0608568
## Run 238 stress 0.06128636
## Run 239 stress 0.02974512
## Run 240 stress 0.06748191
## Run 241 stress 0.03160248
## Run 242 stress 0.02974515
## Run 243 stress 0.02723753
## Run 244 stress 0.02975951
## Run 245 stress 0.02399583
## ... Procrustes: rmse 0.001315869 max resid 0.003990528
## ... Similar to previous best
## Run 246 stress 0.03035659
## Run 247 stress 0.02975952
## Run 248 stress 0.03160244
## Run 249 stress 0.02975953
## Run 250 stress 0.03162197
## Run 251 stress 0.02399586
## ... Procrustes: rmse 0.001317246 max resid 0.004001899
## ... Similar to previous best
## Run 252 stress 0.03164927
## Run 253 stress 0.06082274
## Run 254 stress 0.0297595
## Run 255 stress 0.03163556
## Run 256 stress 0.0297451
## Run 257 stress 0.0272182
## Run 258 stress 0.02974514
## Run 259 stress 0.03035649
## Run 260 stress 0.06082307
## Run 261 stress 0.02974511
## Run 262 stress 0.0297595
## Run 263 stress 0.02974511
## Run 264 stress 0.02723759
## Run 265 stress 0.03040265
## Run 266 stress 0.02721657
## Run 267 stress 0.02975951
## Run 268 stress 0.03035652
## Run 269 stress 0.06082272
## Run 270 stress 0.0316291
## Run 271 stress 0.0297451
## Run 272 stress 0.03035653
## Run 273 stress 0.06749083
## Run 274 stress 0.03035658
## Run 275 stress 0.02721811
## Run 276 stress 0.02974515
## Run 277 stress 0.0608227
## Run 278 stress 0.03162941
## Run 279 stress 0.02399584
## ... Procrustes: rmse 0.00129615 max resid 0.00388811
## ... Similar to previous best
## Run 280 stress 0.06749083
## Run 281 stress 0.02721654
## Run 282 stress 0.02974511
## Run 283 stress 0.02975955
## Run 284 stress 0.03035653
## Run 285 stress 0.02399583
## ... Procrustes: rmse 0.001291271 max resid 0.003823031
## ... Similar to previous best
## Run 286 stress 0.02974511
## Run 287 stress 0.03035657
## Run 288 stress 0.03160244
## Run 289 stress 0.03162928
## Run 290 stress 0.06749083
## Run 291 stress 0.03035932
## Run 292 stress 0.03035937
## Run 293 stress 0.03160262
## Run 294 stress 0.03035931
## Run 295 stress 0.02974513
## Run 296 stress 0.03162928
## Run 297 stress 0.02975951
## Run 298 stress 0.03035653
## Run 299 stress 0.02721815
## Run 300 stress 0.03160251
## Run 301 stress 0.02721654
## Run 302 stress 0.02975951
## Run 303 stress 0.0612862
## Run 304 stress 0.03160257
## Run 305 stress 0.06085675
## Run 306 stress 0.03035924
## Run 307 stress 0.06127786
## Run 308 stress 0.02397861
## ... Procrustes: rmse 8.733014e-05 max resid 0.0001505327
## ... Similar to previous best
## Run 309 stress 0.02399586
## ... Procrustes: rmse 0.001322317 max resid 0.004032224
## ... Similar to previous best
## Run 310 stress 0.02975951
## Run 311 stress 0.02974511
## Run 312 stress 0.02975951
## Run 313 stress 0.02975954
## Run 314 stress 0.06128608
## Run 315 stress 0.02975954
## Run 316 stress 0.02975951
## Run 317 stress 0.0297451
## Run 318 stress 0.06748642
## Run 319 stress 0.02975953
## Run 320 stress 0.02974511
## Run 321 stress 0.2207036
## Run 322 stress 0.03035929
## Run 323 stress 0.02721659
## Run 324 stress 0.02397861
## ... Procrustes: rmse 8.455224e-05 max resid 0.000146881
## ... Similar to previous best
## Run 325 stress 0.03160244
## Run 326 stress 0.03164942
## Run 327 stress 0.03162928
## Run 328 stress 0.02399583
## ... Procrustes: rmse 0.001311934 max resid 0.003969051
## ... Similar to previous best
## Run 329 stress 0.0297451
## Run 330 stress 0.06085715
## Run 331 stress 0.0612424
## Run 332 stress 0.02397859
## ... Procrustes: rmse 4.89619e-05 max resid 8.779031e-05
## ... Similar to previous best
## Run 333 stress 0.03162938
## Run 334 stress 0.0239959
## ... Procrustes: rmse 0.001326848 max resid 0.004060796
## ... Similar to previous best
## Run 335 stress 0.0297451
## Run 336 stress 0.0239959
## ... Procrustes: rmse 0.001327252 max resid 0.004059757
## ... Similar to previous best
## Run 337 stress 0.02723719
## Run 338 stress 0.03162188
## Run 339 stress 0.0272372
## Run 340 stress 0.03162192
## Run 341 stress 0.06148371
## Run 342 stress 0.2207036
## Run 343 stress 0.06128621
## Run 344 stress 0.3657371
## Run 345 stress 0.03035649
## Run 346 stress 0.02975952
## Run 347 stress 0.02723725
## Run 348 stress 0.02723719
## Run 349 stress 0.02975951
## Run 350 stress 0.03035659
## Run 351 stress 0.3657193
## Run 352 stress 0.03035925
## Run 353 stress 0.02721654
## Run 354 stress 0.06085725
## Run 355 stress 0.03035927
## Run 356 stress 0.0297451
## Run 357 stress 0.03035923
## Run 358 stress 0.02721656
## Run 359 stress 0.0303593
## Run 360 stress 0.02723727
## Run 361 stress 0.06082278
## Run 362 stress 0.06748644
## Run 363 stress 0.07130359
## Run 364 stress 0.0297451
## Run 365 stress 0.02723719
## Run 366 stress 0.03035664
## Run 367 stress 0.03164925
## Run 368 stress 0.02975955
## Run 369 stress 0.03035652
## Run 370 stress 0.02397856
## ... Procrustes: rmse 2.185698e-05 max resid 3.278464e-05
## ... Similar to previous best
## Run 371 stress 0.0608227
## Run 372 stress 0.03162925
## Run 373 stress 0.02397857
## ... Procrustes: rmse 5.687665e-05 max resid 9.236317e-05
## ... Similar to previous best
## Run 374 stress 0.03160251
## Run 375 stress 0.03162919
## Run 376 stress 0.06127777
## Run 377 stress 0.03035932
## Run 378 stress 0.02721656
## Run 379 stress 0.02721817
## Run 380 stress 0.03162194
## Run 381 stress 0.03160266
## Run 382 stress 0.03162938
## Run 383 stress 0.02974512
## Run 384 stress 0.0297595
## Run 385 stress 0.02974511
## Run 386 stress 0.02399585
## ... Procrustes: rmse 0.001319282 max resid 0.004015311
## ... Similar to previous best
## Run 387 stress 0.0303594
## Run 388 stress 0.0297451
## Run 389 stress 0.02721654
## Run 390 stress 0.03035928
## Run 391 stress 0.02721661
## Run 392 stress 0.03160248
## Run 393 stress 0.02975951
## Run 394 stress 0.02721658
## Run 395 stress 0.02721814
## Run 396 stress 0.06135757
## Run 397 stress 0.0608567
## Run 398 stress 0.02974511
## Run 399 stress 0.03162922
## Run 400 stress 0.02721816
## Run 401 stress 0.03035929
## Run 402 stress 0.02399583
## ... Procrustes: rmse 0.001300461 max resid 0.003867587
## ... Similar to previous best
## Run 403 stress 0.06123858
## Run 404 stress 0.03035933
## Run 405 stress 0.03160258
## Run 406 stress 0.03035933
## Run 407 stress 0.02974511
## Run 408 stress 0.02974512
## Run 409 stress 0.0713049
## Run 410 stress 0.0316496
## Run 411 stress 0.03035654
## Run 412 stress 0.02975951
## Run 413 stress 0.02975951
## Run 414 stress 0.02974511
## Run 415 stress 0.06123871
## Run 416 stress 0.0272181
## Run 417 stress 0.0316292
## Run 418 stress 0.02721815
## Run 419 stress 0.02399587
## ... Procrustes: rmse 0.001325575 max resid 0.00405102
## ... Similar to previous best
## Run 420 stress 0.02975951
## Run 421 stress 0.03162192
## Run 422 stress 0.03160246
## Run 423 stress 0.02723755
## Run 424 stress 0.02975951
## Run 425 stress 0.07130362
## Run 426 stress 0.06085726
## Run 427 stress 0.0297451
## Run 428 stress 0.03160256
## Run 429 stress 0.02974512
## Run 430 stress 0.03035653
## Run 431 stress 0.03162919
## Run 432 stress 0.03035652
## Run 433 stress 0.03035925
## Run 434 stress 0.07130372
## Run 435 stress 0.02723752
## Run 436 stress 0.06749075
## Run 437 stress 0.03162938
## Run 438 stress 0.0303565
## Run 439 stress 0.06128631
## Run 440 stress 0.06128605
## Run 441 stress 0.02974513
## Run 442 stress 0.03160266
## Run 443 stress 0.02721655
## Run 444 stress 0.02721655
## Run 445 stress 0.03035658
## Run 446 stress 0.02974511
## Run 447 stress 0.02721819
## Run 448 stress 0.03160258
## Run 449 stress 0.0297451
## Run 450 stress 0.02723761
## Run 451 stress 0.02721661
## Run 452 stress 0.02975952
## Run 453 stress 0.07130481
## Run 454 stress 0.03162911
## Run 455 stress 0.02723752
## Run 456 stress 0.0303565
## Run 457 stress 0.02721654
## Run 458 stress 0.02721815
## Run 459 stress 0.0272181
## Run 460 stress 0.02723752
## Run 461 stress 0.02723754
## Run 462 stress 0.03035652
## Run 463 stress 0.0297451
## Run 464 stress 0.06749083
## Run 465 stress 0.02975951
## Run 466 stress 0.03162929
## Run 467 stress 0.0608228
## Run 468 stress 0.02721812
## Run 469 stress 0.03035649
## Run 470 stress 0.03035651
## Run 471 stress 0.02974513
## Run 472 stress 0.02397862
## ... Procrustes: rmse 7.656742e-05 max resid 0.0001343176
## ... Similar to previous best
## Run 473 stress 0.03162188
## Run 474 stress 0.02399585
## ... Procrustes: rmse 0.001311163 max resid 0.003980052
## ... Similar to previous best
## Run 475 stress 0.02721818
## Run 476 stress 0.02721661
## Run 477 stress 0.0297451
## Run 478 stress 0.06128621
## Run 479 stress 0.03162195
## Run 480 stress 0.02721664
## Run 481 stress 0.0297451
## Run 482 stress 0.02723759
## Run 483 stress 0.03035931
## Run 484 stress 0.02721658
## Run 485 stress 0.0297451
## Run 486 stress 0.03160247
## Run 487 stress 0.0608229
## Run 488 stress 0.02975952
## Run 489 stress 0.02975952
## Run 490 stress 0.06082301
## Run 491 stress 0.02721656
## Run 492 stress 0.02975952
## Run 493 stress 0.0297451
## Run 494 stress 0.02974512
## Run 495 stress 0.03035935
## Run 496 stress 0.03160241
## Run 497 stress 0.0297451
## Run 498 stress 0.02975952
## Run 499 stress 0.06085699
## Run 500 stress 0.03162194
## *** Best solution repeated 32 times# Ocean sites and mixed lakes
fdeom_NMDS <- metaMDS(fdeom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.02854805
## Run 1 stress 0.02854809
## ... Procrustes: rmse 5.876288e-05 max resid 0.0001350598
## ... Similar to previous best
## Run 2 stress 0.02854804
## ... New best solution
## ... Procrustes: rmse 1.649422e-05 max resid 3.691337e-05
## ... Similar to previous best
## Run 3 stress 0.0455063
## Run 4 stress 0.02854807
## ... Procrustes: rmse 0.0001754177 max resid 0.0004021639
## ... Similar to previous best
## Run 5 stress 0.02854804
## ... Procrustes: rmse 2.363629e-06 max resid 4.760317e-06
## ... Similar to previous best
## Run 6 stress 0.02854806
## ... Procrustes: rmse 2.993321e-05 max resid 6.80586e-05
## ... Similar to previous best
## Run 7 stress 0.02854805
## ... Procrustes: rmse 0.00015087 max resid 0.0003459527
## ... Similar to previous best
## Run 8 stress 0.02854807
## ... Procrustes: rmse 4.694569e-05 max resid 0.0001077256
## ... Similar to previous best
## Run 9 stress 0.02854808
## ... Procrustes: rmse 6.239399e-05 max resid 0.0001417828
## ... Similar to previous best
## Run 10 stress 0.02854806
## ... Procrustes: rmse 0.0001657592 max resid 0.0003820474
## ... Similar to previous best
## Run 11 stress 0.02854815
## ... Procrustes: rmse 0.00025349 max resid 0.0005839664
## ... Similar to previous best
## Run 12 stress 0.04754104
## Run 13 stress 0.02854806
## ... Procrustes: rmse 0.0001625274 max resid 0.0003727271
## ... Similar to previous best
## Run 14 stress 0.08585305
## Run 15 stress 0.0455065
## Run 16 stress 0.02854803
## ... New best solution
## ... Procrustes: rmse 2.997186e-05 max resid 6.957237e-05
## ... Similar to previous best
## Run 17 stress 0.08037808
## Run 18 stress 0.04754118
## Run 19 stress 0.04754106
## Run 20 stress 0.02854823
## ... Procrustes: rmse 0.0002727271 max resid 0.0006356073
## ... Similar to previous best
## Run 21 stress 0.2336283
## Run 22 stress 0.04754111
## Run 23 stress 0.04550636
## Run 24 stress 0.04754102
## Run 25 stress 0.04754102
## Run 26 stress 0.02854817
## ... Procrustes: rmse 0.0001671538 max resid 0.0003835147
## ... Similar to previous best
## Run 27 stress 0.04550651
## Run 28 stress 0.04754113
## Run 29 stress 0.02854807
## ... Procrustes: rmse 7.717645e-05 max resid 0.0001783601
## ... Similar to previous best
## Run 30 stress 0.04754111
## Run 31 stress 0.04754113
## Run 32 stress 0.02854808
## ... Procrustes: rmse 0.0001504889 max resid 0.0003450252
## ... Similar to previous best
## Run 33 stress 0.02854816
## ... Procrustes: rmse 0.0001657504 max resid 0.0003808448
## ... Similar to previous best
## Run 34 stress 0.04754116
## Run 35 stress 0.02854807
## ... Procrustes: rmse 0.0001361022 max resid 0.0003106124
## ... Similar to previous best
## Run 36 stress 0.04550634
## Run 37 stress 0.0455065
## Run 38 stress 0.04754099
## Run 39 stress 0.02854819
## ... Procrustes: rmse 0.0001860317 max resid 0.0004282067
## ... Similar to previous best
## Run 40 stress 0.02854813
## ... Procrustes: rmse 0.0001360721 max resid 0.0003134106
## ... Similar to previous best
## Run 41 stress 0.02854815
## ... Procrustes: rmse 0.0002196091 max resid 0.0005023479
## ... Similar to previous best
## Run 42 stress 0.04754105
## Run 43 stress 0.04754099
## Run 44 stress 0.02854809
## ... Procrustes: rmse 0.0001046013 max resid 0.0002409174
## ... Similar to previous best
## Run 45 stress 0.3407335
## Run 46 stress 0.04754102
## Run 47 stress 0.02854813
## ... Procrustes: rmse 0.0001897089 max resid 0.0004324266
## ... Similar to previous best
## Run 48 stress 0.02854804
## ... Procrustes: rmse 8.49079e-06 max resid 2.163417e-05
## ... Similar to previous best
## Run 49 stress 0.0285481
## ... Procrustes: rmse 0.0001064776 max resid 0.0002444851
## ... Similar to previous best
## Run 50 stress 0.08037812
## Run 51 stress 0.02854805
## ... Procrustes: rmse 4.312569e-05 max resid 9.881034e-05
## ... Similar to previous best
## Run 52 stress 0.04550644
## Run 53 stress 0.02854819
## ... Procrustes: rmse 0.0001801611 max resid 0.0004139101
## ... Similar to previous best
## Run 54 stress 0.02854812
## ... Procrustes: rmse 0.0001991271 max resid 0.0004558436
## ... Similar to previous best
## Run 55 stress 0.04754103
## Run 56 stress 0.04754103
## Run 57 stress 0.02854806
## ... Procrustes: rmse 6.095594e-05 max resid 0.0001387091
## ... Similar to previous best
## Run 58 stress 0.02854818
## ... Procrustes: rmse 0.0001619874 max resid 0.0003748132
## ... Similar to previous best
## Run 59 stress 0.04550642
## Run 60 stress 0.08071124
## Run 61 stress 0.04754105
## Run 62 stress 0.04550646
## Run 63 stress 0.04550631
## Run 64 stress 0.02854805
## ... Procrustes: rmse 4.784302e-05 max resid 0.0001100684
## ... Similar to previous best
## Run 65 stress 0.08203614
## Run 66 stress 0.04754104
## Run 67 stress 0.08061326
## Run 68 stress 0.04754099
## Run 69 stress 0.02854821
## ... Procrustes: rmse 0.0001821821 max resid 0.000421104
## ... Similar to previous best
## Run 70 stress 0.04754098
## Run 71 stress 0.04754098
## Run 72 stress 0.04754105
## Run 73 stress 0.04754109
## Run 74 stress 0.047541
## Run 75 stress 0.02854816
## ... Procrustes: rmse 0.0001567762 max resid 0.0003620936
## ... Similar to previous best
## Run 76 stress 0.04754107
## Run 77 stress 0.3406959
## Run 78 stress 0.04754113
## Run 79 stress 0.02854814
## ... Procrustes: rmse 0.0001325633 max resid 0.0003026097
## ... Similar to previous best
## Run 80 stress 0.02854811
## ... Procrustes: rmse 0.0001225602 max resid 0.0002824603
## ... Similar to previous best
## Run 81 stress 0.04754104
## Run 82 stress 0.02854808
## ... Procrustes: rmse 8.269769e-05 max resid 0.0001881754
## ... Similar to previous best
## Run 83 stress 0.04754102
## Run 84 stress 0.04754099
## Run 85 stress 0.04550665
## Run 86 stress 0.08061305
## Run 87 stress 0.04754104
## Run 88 stress 0.04550638
## Run 89 stress 0.0285482
## ... Procrustes: rmse 0.0002573487 max resid 0.0005888527
## ... Similar to previous best
## Run 90 stress 0.02854808
## ... Procrustes: rmse 8.47139e-05 max resid 0.000194843
## ... Similar to previous best
## Run 91 stress 0.02854812
## ... Procrustes: rmse 0.0001093259 max resid 0.0002476162
## ... Similar to previous best
## Run 92 stress 0.04550631
## Run 93 stress 0.02854811
## ... Procrustes: rmse 0.0001836311 max resid 0.0004207245
## ... Similar to previous best
## Run 94 stress 0.04754119
## Run 95 stress 0.02854806
## ... Procrustes: rmse 5.915158e-05 max resid 0.0001361339
## ... Similar to previous best
## Run 96 stress 0.04754099
## Run 97 stress 0.04754098
## Run 98 stress 0.04754109
## Run 99 stress 0.02854815
## ... Procrustes: rmse 0.0002201087 max resid 0.0004910222
## ... Similar to previous best
## Run 100 stress 0.02854807
## ... Procrustes: rmse 0.000139961 max resid 0.0003283818
## ... Similar to previous best
## Run 101 stress 0.08448501
## Run 102 stress 0.2799942
## Run 103 stress 0.08636392
## Run 104 stress 0.04754106
## Run 105 stress 0.02854819
## ... Procrustes: rmse 0.0001478403 max resid 0.0003355505
## ... Similar to previous best
## Run 106 stress 0.04754117
## Run 107 stress 0.02854815
## ... Procrustes: rmse 0.0002219281 max resid 0.0005083211
## ... Similar to previous best
## Run 108 stress 0.02854817
## ... Procrustes: rmse 0.0001527298 max resid 0.0003533647
## ... Similar to previous best
## Run 109 stress 0.04754105
## Run 110 stress 0.02854803
## ... Procrustes: rmse 6.806411e-05 max resid 0.0001553606
## ... Similar to previous best
## Run 111 stress 0.02854806
## ... Procrustes: rmse 0.0001207923 max resid 0.0002830623
## ... Similar to previous best
## Run 112 stress 0.08071108
## Run 113 stress 0.02854809
## ... Procrustes: rmse 0.000105464 max resid 0.0002422974
## ... Similar to previous best
## Run 114 stress 0.04550638
## Run 115 stress 0.08061532
## Run 116 stress 0.0807869
## Run 117 stress 0.02854808
## ... Procrustes: rmse 8.826907e-05 max resid 0.0002033415
## ... Similar to previous best
## Run 118 stress 0.04754113
## Run 119 stress 0.02854804
## ... Procrustes: rmse 3.457983e-05 max resid 7.875695e-05
## ... Similar to previous best
## Run 120 stress 0.2336285
## Run 121 stress 0.02854813
## ... Procrustes: rmse 0.0001885309 max resid 0.0004288865
## ... Similar to previous best
## Run 122 stress 0.02854816
## ... Procrustes: rmse 0.0001638056 max resid 0.0003762485
## ... Similar to previous best
## Run 123 stress 0.02854812
## ... Procrustes: rmse 0.0001278568 max resid 0.0002939586
## ... Similar to previous best
## Run 124 stress 0.04754103
## Run 125 stress 0.02854805
## ... Procrustes: rmse 4.974235e-05 max resid 0.0001140346
## ... Similar to previous best
## Run 126 stress 0.02854813
## ... Procrustes: rmse 0.0002043304 max resid 0.0004693209
## ... Similar to previous best
## Run 127 stress 0.04550646
## Run 128 stress 0.04550633
## Run 129 stress 0.02854814
## ... Procrustes: rmse 0.0001432348 max resid 0.0003293465
## ... Similar to previous best
## Run 130 stress 0.02854811
## ... Procrustes: rmse 0.0001180541 max resid 0.0002709489
## ... Similar to previous best
## Run 131 stress 0.08098007
## Run 132 stress 0.02854808
## ... Procrustes: rmse 0.0001535552 max resid 0.0003527571
## ... Similar to previous best
## Run 133 stress 0.02854819
## ... Procrustes: rmse 0.0001851773 max resid 0.0004263125
## ... Similar to previous best
## Run 134 stress 0.04550642
## Run 135 stress 0.02854806
## ... Procrustes: rmse 5.894977e-05 max resid 0.000135829
## ... Similar to previous best
## Run 136 stress 0.04754102
## Run 137 stress 0.02854818
## ... Procrustes: rmse 0.0001667702 max resid 0.0003854923
## ... Similar to previous best
## Run 138 stress 0.0285481
## ... Procrustes: rmse 0.0001080189 max resid 0.0002484444
## ... Similar to previous best
## Run 139 stress 0.04550637
## Run 140 stress 0.02854817
## ... Procrustes: rmse 0.0002259674 max resid 0.0005149684
## ... Similar to previous best
## Run 141 stress 0.02854803
## ... New best solution
## ... Procrustes: rmse 2.268134e-05 max resid 5.165921e-05
## ... Similar to previous best
## Run 142 stress 0.02854809
## ... Procrustes: rmse 0.0001457801 max resid 0.0003328199
## ... Similar to previous best
## Run 143 stress 0.02854809
## ... Procrustes: rmse 0.0001192374 max resid 0.0002734311
## ... Similar to previous best
## Run 144 stress 0.0285481
## ... Procrustes: rmse 0.0001354987 max resid 0.0003105412
## ... Similar to previous best
## Run 145 stress 0.04754107
## Run 146 stress 0.0285482
## ... Procrustes: rmse 0.0002144514 max resid 0.000487359
## ... Similar to previous best
## Run 147 stress 0.312549
## Run 148 stress 0.0475411
## Run 149 stress 0.04754114
## Run 150 stress 0.02854807
## ... Procrustes: rmse 9.692386e-05 max resid 0.0002224861
## ... Similar to previous best
## Run 151 stress 0.02854816
## ... Procrustes: rmse 0.0001847149 max resid 0.0004243105
## ... Similar to previous best
## Run 152 stress 0.02854804
## ... Procrustes: rmse 5.904979e-05 max resid 0.0001350138
## ... Similar to previous best
## Run 153 stress 0.02854804
## ... Procrustes: rmse 5.708932e-05 max resid 0.0001313011
## ... Similar to previous best
## Run 154 stress 0.04754109
## Run 155 stress 0.02854818
## ... Procrustes: rmse 0.0001961931 max resid 0.0004507737
## ... Similar to previous best
## Run 156 stress 0.0285481
## ... Procrustes: rmse 0.0001346835 max resid 0.0003092231
## ... Similar to previous best
## Run 157 stress 0.08448466
## Run 158 stress 0.04754099
## Run 159 stress 0.04550644
## Run 160 stress 0.04754114
## Run 161 stress 0.04754105
## Run 162 stress 0.0285482
## ... Procrustes: rmse 0.0001971874 max resid 0.0004497266
## ... Similar to previous best
## Run 163 stress 0.04550629
## Run 164 stress 0.02854805
## ... Procrustes: rmse 7.731108e-05 max resid 0.0001773535
## ... Similar to previous best
## Run 165 stress 0.04754118
## Run 166 stress 0.02854815
## ... Procrustes: rmse 0.0001731992 max resid 0.0003986479
## ... Similar to previous best
## Run 167 stress 0.02854809
## ... Procrustes: rmse 0.0001447447 max resid 0.0003307816
## ... Similar to previous best
## Run 168 stress 0.02854814
## ... Procrustes: rmse 0.0001641191 max resid 0.0003777242
## ... Similar to previous best
## Run 169 stress 0.3403702
## Run 170 stress 0.02854819
## ... Procrustes: rmse 0.0002087491 max resid 0.0004750898
## ... Similar to previous best
## Run 171 stress 0.02854822
## ... Procrustes: rmse 0.000224405 max resid 0.0005166739
## ... Similar to previous best
## Run 172 stress 0.04550642
## Run 173 stress 0.08585364
## Run 174 stress 0.08707195
## Run 175 stress 0.0455063
## Run 176 stress 0.02854803
## ... Procrustes: rmse 2.570917e-05 max resid 5.887497e-05
## ... Similar to previous best
## Run 177 stress 0.02854816
## ... Procrustes: rmse 0.0001853493 max resid 0.000425239
## ... Similar to previous best
## Run 178 stress 0.02854811
## ... Procrustes: rmse 0.0001608885 max resid 0.0003703423
## ... Similar to previous best
## Run 179 stress 0.08097804
## Run 180 stress 0.04550635
## Run 181 stress 0.02854811
## ... Procrustes: rmse 0.0001135595 max resid 0.0002553074
## ... Similar to previous best
## Run 182 stress 0.04754101
## Run 183 stress 0.02854806
## ... Procrustes: rmse 0.000106997 max resid 0.0002441492
## ... Similar to previous best
## Run 184 stress 0.02854817
## ... Procrustes: rmse 0.0001892007 max resid 0.0004345237
## ... Similar to previous best
## Run 185 stress 0.2799941
## Run 186 stress 0.02854805
## ... Procrustes: rmse 9.40771e-05 max resid 0.0002158284
## ... Similar to previous best
## Run 187 stress 0.0858533
## Run 188 stress 0.02854822
## ... Procrustes: rmse 0.0002089372 max resid 0.0004826365
## ... Similar to previous best
## Run 189 stress 0.04550647
## Run 190 stress 0.04754104
## Run 191 stress 0.08012922
## Run 192 stress 0.02854814
## ... Procrustes: rmse 0.0001661789 max resid 0.0003816481
## ... Similar to previous best
## Run 193 stress 0.02854806
## ... Procrustes: rmse 8.36004e-05 max resid 0.0001928761
## ... Similar to previous best
## Run 194 stress 0.2358818
## Run 195 stress 0.04754122
## Run 196 stress 0.04550637
## Run 197 stress 0.04754103
## Run 198 stress 0.04754103
## Run 199 stress 0.02854808
## ... Procrustes: rmse 0.0001307423 max resid 0.0002980873
## ... Similar to previous best
## Run 200 stress 0.04754108
## Run 201 stress 0.02854815
## ... Procrustes: rmse 0.0001747571 max resid 0.0004005305
## ... Similar to previous best
## Run 202 stress 0.02854808
## ... Procrustes: rmse 0.0001119361 max resid 0.0002566076
## ... Similar to previous best
## Run 203 stress 0.02854814
## ... Procrustes: rmse 0.000172343 max resid 0.0003955764
## ... Similar to previous best
## Run 204 stress 0.02854811
## ... Procrustes: rmse 0.0001387679 max resid 0.0003163104
## ... Similar to previous best
## Run 205 stress 0.02854809
## ... Procrustes: rmse 0.0001466374 max resid 0.0003355835
## ... Similar to previous best
## Run 206 stress 0.04754112
## Run 207 stress 0.02854805
## ... Procrustes: rmse 6.617673e-05 max resid 0.000152541
## ... Similar to previous best
## Run 208 stress 0.02854811
## ... Procrustes: rmse 0.0001627218 max resid 0.0003722625
## ... Similar to previous best
## Run 209 stress 0.04754101
## Run 210 stress 0.04550632
## Run 211 stress 0.04754099
## Run 212 stress 0.0475411
## Run 213 stress 0.3275219
## Run 214 stress 0.04754116
## Run 215 stress 0.02854808
## ... Procrustes: rmse 0.0001129817 max resid 0.0002592628
## ... Similar to previous best
## Run 216 stress 0.02854816
## ... Procrustes: rmse 0.0001797738 max resid 0.0004109093
## ... Similar to previous best
## Run 217 stress 0.02854804
## ... Procrustes: rmse 3.802347e-05 max resid 8.675146e-05
## ... Similar to previous best
## Run 218 stress 0.04754113
## Run 219 stress 0.02854809
## ... Procrustes: rmse 0.0001384024 max resid 0.000318374
## ... Similar to previous best
## Run 220 stress 0.02854807
## ... Procrustes: rmse 0.00011904 max resid 0.0002858207
## ... Similar to previous best
## Run 221 stress 0.02854804
## ... Procrustes: rmse 4.245693e-05 max resid 9.573707e-05
## ... Similar to previous best
## Run 222 stress 0.04754099
## Run 223 stress 0.02854818
## ... Procrustes: rmse 0.0001978956 max resid 0.0004542559
## ... Similar to previous best
## Run 224 stress 0.04754103
## Run 225 stress 0.02854812
## ... Procrustes: rmse 0.0001685153 max resid 0.000381704
## ... Similar to previous best
## Run 226 stress 0.02854814
## ... Procrustes: rmse 0.0001908009 max resid 0.0004370263
## ... Similar to previous best
## Run 227 stress 0.04754108
## Run 228 stress 0.02854821
## ... Procrustes: rmse 0.0002165243 max resid 0.0004970223
## ... Similar to previous best
## Run 229 stress 0.02854818
## ... Procrustes: rmse 0.0002178819 max resid 0.0004984661
## ... Similar to previous best
## Run 230 stress 0.04754107
## Run 231 stress 0.0475411
## Run 232 stress 0.340734
## Run 233 stress 0.08070884
## Run 234 stress 0.08078632
## Run 235 stress 0.04550642
## Run 236 stress 0.02854812
## ... Procrustes: rmse 0.000178479 max resid 0.0004083099
## ... Similar to previous best
## Run 237 stress 0.04550641
## Run 238 stress 0.02854816
## ... Procrustes: rmse 0.0001825466 max resid 0.000418692
## ... Similar to previous best
## Run 239 stress 0.0285481
## ... Procrustes: rmse 0.0001329256 max resid 0.0003043545
## ... Similar to previous best
## Run 240 stress 0.02854816
## ... Procrustes: rmse 0.0001696433 max resid 0.0003917963
## ... Similar to previous best
## Run 241 stress 0.02854823
## ... Procrustes: rmse 0.0002526204 max resid 0.0005784862
## ... Similar to previous best
## Run 242 stress 0.047541
## Run 243 stress 0.04550633
## Run 244 stress 0.04550652
## Run 245 stress 0.08563906
## Run 246 stress 0.02854816
## ... Procrustes: rmse 0.0002067603 max resid 0.0004741799
## ... Similar to previous best
## Run 247 stress 0.3407336
## Run 248 stress 0.02854812
## ... Procrustes: rmse 0.0001497952 max resid 0.0003441332
## ... Similar to previous best
## Run 249 stress 0.08061369
## Run 250 stress 0.04754116
## Run 251 stress 0.02854808
## ... Procrustes: rmse 0.0001085041 max resid 0.0002484782
## ... Similar to previous best
## Run 252 stress 0.04754112
## Run 253 stress 0.3275201
## Run 254 stress 0.02854822
## ... Procrustes: rmse 0.0002261895 max resid 0.0005199898
## ... Similar to previous best
## Run 255 stress 0.02854806
## ... Procrustes: rmse 7.195852e-05 max resid 0.0001635277
## ... Similar to previous best
## Run 256 stress 0.0285481
## ... Procrustes: rmse 0.0001360465 max resid 0.0003121593
## ... Similar to previous best
## Run 257 stress 0.0455064
## Run 258 stress 0.02854823
## ... Procrustes: rmse 0.000217405 max resid 0.0005017354
## ... Similar to previous best
## Run 259 stress 0.02854807
## ... Procrustes: rmse 0.0001238765 max resid 0.0002839557
## ... Similar to previous best
## Run 260 stress 0.02854813
## ... Procrustes: rmse 0.0001819704 max resid 0.0004168933
## ... Similar to previous best
## Run 261 stress 0.08012929
## Run 262 stress 0.02854809
## ... Procrustes: rmse 0.0001218843 max resid 0.0002784274
## ... Similar to previous best
## Run 263 stress 0.02854803
## ... Procrustes: rmse 3.447092e-05 max resid 7.89202e-05
## ... Similar to previous best
## Run 264 stress 0.02854807
## ... Procrustes: rmse 7.920598e-05 max resid 0.0001796155
## ... Similar to previous best
## Run 265 stress 0.04754102
## Run 266 stress 0.3275197
## Run 267 stress 0.047541
## Run 268 stress 0.02854816
## ... Procrustes: rmse 0.0001833788 max resid 0.0004221647
## ... Similar to previous best
## Run 269 stress 0.02854806
## ... Procrustes: rmse 0.000104434 max resid 0.0002390292
## ... Similar to previous best
## Run 270 stress 0.02854804
## ... Procrustes: rmse 6.050195e-05 max resid 0.0001384799
## ... Similar to previous best
## Run 271 stress 0.04550639
## Run 272 stress 0.04754099
## Run 273 stress 0.02854813
## ... Procrustes: rmse 0.0001491227 max resid 0.0003403272
## ... Similar to previous best
## Run 274 stress 0.04754098
## Run 275 stress 0.0285481
## ... Procrustes: rmse 0.0001265351 max resid 0.0002893963
## ... Similar to previous best
## Run 276 stress 0.04754103
## Run 277 stress 0.02854804
## ... Procrustes: rmse 6.393263e-05 max resid 0.0001464068
## ... Similar to previous best
## Run 278 stress 0.04754099
## Run 279 stress 0.04754107
## Run 280 stress 0.02854819
## ... Procrustes: rmse 0.0001968818 max resid 0.0004502312
## ... Similar to previous best
## Run 281 stress 0.04754115
## Run 282 stress 0.04754101
## Run 283 stress 0.02854809
## ... Procrustes: rmse 0.000126644 max resid 0.0002908512
## ... Similar to previous best
## Run 284 stress 0.04754117
## Run 285 stress 0.04754112
## Run 286 stress 0.08071468
## Run 287 stress 0.02854818
## ... Procrustes: rmse 0.0002233983 max resid 0.000510964
## ... Similar to previous best
## Run 288 stress 0.04754102
## Run 289 stress 0.04754104
## Run 290 stress 0.08037754
## Run 291 stress 0.08636346
## Run 292 stress 0.04754102
## Run 293 stress 0.02854805
## ... Procrustes: rmse 9.508757e-05 max resid 0.0002171252
## ... Similar to previous best
## Run 294 stress 0.0285481
## ... Procrustes: rmse 0.0001488074 max resid 0.0003395809
## ... Similar to previous best
## Run 295 stress 0.04754101
## Run 296 stress 0.02854804
## ... Procrustes: rmse 5.728421e-05 max resid 0.0001307284
## ... Similar to previous best
## Run 297 stress 0.3125478
## Run 298 stress 0.02854808
## ... Procrustes: rmse 0.0001297805 max resid 0.0002970404
## ... Similar to previous best
## Run 299 stress 0.04550635
## Run 300 stress 0.04754103
## Run 301 stress 0.3403702
## Run 302 stress 0.08563982
## Run 303 stress 0.04550651
## Run 304 stress 0.02854822
## ... Procrustes: rmse 0.0002265329 max resid 0.0005192468
## ... Similar to previous best
## Run 305 stress 0.04754113
## Run 306 stress 0.04754103
## Run 307 stress 0.02854803
## ... Procrustes: rmse 2.500526e-05 max resid 5.749615e-05
## ... Similar to previous best
## Run 308 stress 0.02854808
## ... Procrustes: rmse 0.0001079876 max resid 0.0002475649
## ... Similar to previous best
## Run 309 stress 0.0475411
## Run 310 stress 0.02854809
## ... Procrustes: rmse 0.0001219989 max resid 0.0002800758
## ... Similar to previous best
## Run 311 stress 0.02854814
## ... Procrustes: rmse 0.0001684749 max resid 0.0003870747
## ... Similar to previous best
## Run 312 stress 0.02854808
## ... Procrustes: rmse 0.000111752 max resid 0.0002557989
## ... Similar to previous best
## Run 313 stress 0.02854818
## ... Procrustes: rmse 0.0001991907 max resid 0.0004584773
## ... Similar to previous best
## Run 314 stress 0.08448417
## Run 315 stress 0.04754101
## Run 316 stress 0.08078105
## Run 317 stress 0.02854823
## ... Procrustes: rmse 0.0002533266 max resid 0.0005792802
## ... Similar to previous best
## Run 318 stress 0.04550652
## Run 319 stress 0.08071133
## Run 320 stress 0.04754113
## Run 321 stress 0.02854823
## ... Procrustes: rmse 0.0002275996 max resid 0.000523857
## ... Similar to previous best
## Run 322 stress 0.02854817
## ... Procrustes: rmse 0.000145411 max resid 0.0003274296
## ... Similar to previous best
## Run 323 stress 0.02854803
## ... New best solution
## ... Procrustes: rmse 1.598034e-05 max resid 3.717128e-05
## ... Similar to previous best
## Run 324 stress 0.02854816
## ... Procrustes: rmse 0.0001880297 max resid 0.0004354724
## ... Similar to previous best
## Run 325 stress 0.02854818
## ... Procrustes: rmse 0.0002035822 max resid 0.0004653477
## ... Similar to previous best
## Run 326 stress 0.3276421
## Run 327 stress 0.04550631
## Run 328 stress 0.02854811
## ... Procrustes: rmse 0.0001539172 max resid 0.0003543276
## ... Similar to previous best
## Run 329 stress 0.04550634
## Run 330 stress 0.02854814
## ... Procrustes: rmse 0.0001799635 max resid 0.0004144507
## ... Similar to previous best
## Run 331 stress 0.02854805
## ... Procrustes: rmse 6.710213e-05 max resid 0.000154457
## ... Similar to previous best
## Run 332 stress 0.02854814
## ... Procrustes: rmse 0.0001862464 max resid 0.0004276175
## ... Similar to previous best
## Run 333 stress 0.02854813
## ... Procrustes: rmse 0.0001667797 max resid 0.0003813338
## ... Similar to previous best
## Run 334 stress 0.02854803
## ... Procrustes: rmse 3.617372e-05 max resid 8.424652e-05
## ... Similar to previous best
## Run 335 stress 0.02854808
## ... Procrustes: rmse 0.0001082536 max resid 0.0002462411
## ... Similar to previous best
## Run 336 stress 0.02854805
## ... Procrustes: rmse 7.472679e-05 max resid 0.0001723955
## ... Similar to previous best
## Run 337 stress 0.04550638
## Run 338 stress 0.04754107
## Run 339 stress 0.02854805
## ... Procrustes: rmse 8.19988e-05 max resid 0.000189173
## ... Similar to previous best
## Run 340 stress 0.04754103
## Run 341 stress 0.04550644
## Run 342 stress 0.04754108
## Run 343 stress 0.04550655
## Run 344 stress 0.0455063
## Run 345 stress 0.04550648
## Run 346 stress 0.04754111
## Run 347 stress 0.04754116
## Run 348 stress 0.02854809
## ... Procrustes: rmse 0.0001409432 max resid 0.0003243054
## ... Similar to previous best
## Run 349 stress 0.04550642
## Run 350 stress 0.04754098
## Run 351 stress 0.02854804
## ... Procrustes: rmse 7.049816e-05 max resid 0.0001622855
## ... Similar to previous best
## Run 352 stress 0.04550641
## Run 353 stress 0.04754108
## Run 354 stress 0.04550637
## Run 355 stress 0.04754099
## Run 356 stress 0.02854818
## ... Procrustes: rmse 0.0002175537 max resid 0.000499703
## ... Similar to previous best
## Run 357 stress 0.04754102
## Run 358 stress 0.04550647
## Run 359 stress 0.04754105
## Run 360 stress 0.04754098
## Run 361 stress 0.3119309
## Run 362 stress 0.02854803
## ... Procrustes: rmse 1.416298e-05 max resid 3.290341e-05
## ... Similar to previous best
## Run 363 stress 0.04754113
## Run 364 stress 0.04550634
## Run 365 stress 0.0801296
## Run 366 stress 0.02854814
## ... Procrustes: rmse 0.0001756138 max resid 0.0004013713
## ... Similar to previous best
## Run 367 stress 0.04754103
## Run 368 stress 0.02854823
## ... Procrustes: rmse 0.0002447221 max resid 0.0005608863
## ... Similar to previous best
## Run 369 stress 0.02854818
## ... Procrustes: rmse 0.0002183995 max resid 0.0005014774
## ... Similar to previous best
## Run 370 stress 0.04754104
## Run 371 stress 0.08636269
## Run 372 stress 0.02854807
## ... Procrustes: rmse 0.0001110476 max resid 0.0002537497
## ... Similar to previous best
## Run 373 stress 0.02854808
## ... Procrustes: rmse 0.0001126229 max resid 0.0002576391
## ... Similar to previous best
## Run 374 stress 0.0285481
## ... Procrustes: rmse 0.0001499488 max resid 0.000344879
## ... Similar to previous best
## Run 375 stress 0.02854812
## ... Procrustes: rmse 0.0001640321 max resid 0.000376588
## ... Similar to previous best
## Run 376 stress 0.02854806
## ... Procrustes: rmse 0.000102883 max resid 0.000221106
## ... Similar to previous best
## Run 377 stress 0.0455063
## Run 378 stress 0.02854804
## ... Procrustes: rmse 7.381661e-05 max resid 0.0001698107
## ... Similar to previous best
## Run 379 stress 0.02854803
## ... Procrustes: rmse 2.014161e-05 max resid 4.698569e-05
## ... Similar to previous best
## Run 380 stress 0.04754109
## Run 381 stress 0.02854813
## ... Procrustes: rmse 0.0001779739 max resid 0.0004100194
## ... Similar to previous best
## Run 382 stress 0.02854804
## ... Procrustes: rmse 7.069069e-05 max resid 0.0001624525
## ... Similar to previous best
## Run 383 stress 0.3407335
## Run 384 stress 0.04550643
## Run 385 stress 0.02854805
## ... Procrustes: rmse 6.916647e-05 max resid 0.0001575116
## ... Similar to previous best
## Run 386 stress 0.04754103
## Run 387 stress 0.08013038
## Run 388 stress 0.04550647
## Run 389 stress 0.04550644
## Run 390 stress 0.02854805
## ... Procrustes: rmse 8.804814e-05 max resid 0.0002027216
## ... Similar to previous best
## Run 391 stress 0.04550628
## Run 392 stress 0.02854809
## ... Procrustes: rmse 0.0001368971 max resid 0.0003149184
## ... Similar to previous best
## Run 393 stress 0.02854819
## ... Procrustes: rmse 0.0002197249 max resid 0.0005053054
## ... Similar to previous best
## Run 394 stress 0.0455064
## Run 395 stress 0.02854804
## ... Procrustes: rmse 6.339469e-05 max resid 0.0001456931
## ... Similar to previous best
## Run 396 stress 0.02854809
## ... Procrustes: rmse 0.0001292511 max resid 0.000294458
## ... Similar to previous best
## Run 397 stress 0.02854811
## ... Procrustes: rmse 0.000156669 max resid 0.000360126
## ... Similar to previous best
## Run 398 stress 0.04754098
## Run 399 stress 0.2758775
## Run 400 stress 0.02854818
## ... Procrustes: rmse 0.0001925573 max resid 0.0004379106
## ... Similar to previous best
## Run 401 stress 0.02854812
## ... Procrustes: rmse 0.0001599873 max resid 0.0003655039
## ... Similar to previous best
## Run 402 stress 0.02854816
## ... Procrustes: rmse 0.0001991702 max resid 0.0004572363
## ... Similar to previous best
## Run 403 stress 0.04754106
## Run 404 stress 0.02854813
## ... Procrustes: rmse 0.0001610431 max resid 0.0003690957
## ... Similar to previous best
## Run 405 stress 0.04754102
## Run 406 stress 0.04754112
## Run 407 stress 0.04550631
## Run 408 stress 0.04754116
## Run 409 stress 0.02854804
## ... Procrustes: rmse 5.517888e-05 max resid 0.0001269232
## ... Similar to previous best
## Run 410 stress 0.04550637
## Run 411 stress 0.04550636
## Run 412 stress 0.02854809
## ... Procrustes: rmse 0.0001421381 max resid 0.0003259327
## ... Similar to previous best
## Run 413 stress 0.02854809
## ... Procrustes: rmse 0.0001284122 max resid 0.0002965513
## ... Similar to previous best
## Run 414 stress 0.02854804
## ... Procrustes: rmse 4.362605e-05 max resid 7.336012e-05
## ... Similar to previous best
## Run 415 stress 0.3266727
## Run 416 stress 0.02854813
## ... Procrustes: rmse 0.0001748529 max resid 0.0004015838
## ... Similar to previous best
## Run 417 stress 0.047541
## Run 418 stress 0.08636322
## Run 419 stress 0.02854816
## ... Procrustes: rmse 0.0001857848 max resid 0.0004248946
## ... Similar to previous best
## Run 420 stress 0.02854805
## ... Procrustes: rmse 7.072612e-05 max resid 0.00016167
## ... Similar to previous best
## Run 421 stress 0.02854812
## ... Procrustes: rmse 0.0001549812 max resid 0.0003581226
## ... Similar to previous best
## Run 422 stress 0.04550632
## Run 423 stress 0.04754106
## Run 424 stress 0.0801297
## Run 425 stress 0.3266727
## Run 426 stress 0.02854819
## ... Procrustes: rmse 0.0002211632 max resid 0.0005080964
## ... Similar to previous best
## Run 427 stress 0.02854804
## ... Procrustes: rmse 7.510955e-05 max resid 0.0001729978
## ... Similar to previous best
## Run 428 stress 0.02854809
## ... Procrustes: rmse 0.0001355999 max resid 0.0003116843
## ... Similar to previous best
## Run 429 stress 0.04754118
## Run 430 stress 0.02854812
## ... Procrustes: rmse 0.0001415983 max resid 0.0003261509
## ... Similar to previous best
## Run 431 stress 0.02854805
## ... Procrustes: rmse 7.492309e-05 max resid 0.0001703657
## ... Similar to previous best
## Run 432 stress 0.02854807
## ... Procrustes: rmse 0.0001115511 max resid 0.0002568232
## ... Similar to previous best
## Run 433 stress 0.04754102
## Run 434 stress 0.02854817
## ... Procrustes: rmse 0.0002045221 max resid 0.0004696784
## ... Similar to previous best
## Run 435 stress 0.04550636
## Run 436 stress 0.02854816
## ... Procrustes: rmse 0.0002014204 max resid 0.0004629186
## ... Similar to previous best
## Run 437 stress 0.02854806
## ... Procrustes: rmse 9.844808e-05 max resid 0.0002258193
## ... Similar to previous best
## Run 438 stress 0.04754105
## Run 439 stress 0.02854813
## ... Procrustes: rmse 0.0001771157 max resid 0.0004057092
## ... Similar to previous best
## Run 440 stress 0.04754102
## Run 441 stress 0.04754114
## Run 442 stress 0.04754102
## Run 443 stress 0.0285483
## ... Procrustes: rmse 0.0002538763 max resid 0.000579064
## ... Similar to previous best
## Run 444 stress 0.02854806
## ... Procrustes: rmse 8.875645e-05 max resid 0.0002025363
## ... Similar to previous best
## Run 445 stress 0.04550633
## Run 446 stress 0.04550629
## Run 447 stress 0.02854815
## ... Procrustes: rmse 0.0001942703 max resid 0.0004460104
## ... Similar to previous best
## Run 448 stress 0.02854812
## ... Procrustes: rmse 0.0001667236 max resid 0.0003827968
## ... Similar to previous best
## Run 449 stress 0.02854812
## ... Procrustes: rmse 0.0001653719 max resid 0.0003803215
## ... Similar to previous best
## Run 450 stress 0.02854812
## ... Procrustes: rmse 0.0001720521 max resid 0.0003958496
## ... Similar to previous best
## Run 451 stress 0.02854803
## ... Procrustes: rmse 1.913879e-05 max resid 4.568289e-05
## ... Similar to previous best
## Run 452 stress 0.04754105
## Run 453 stress 0.02854803
## ... Procrustes: rmse 4.540095e-05 max resid 0.0001047007
## ... Similar to previous best
## Run 454 stress 0.04754099
## Run 455 stress 0.04550648
## Run 456 stress 0.2358821
## Run 457 stress 0.04550632
## Run 458 stress 0.0285481
## ... Procrustes: rmse 0.0001413333 max resid 0.0003232146
## ... Similar to previous best
## Run 459 stress 0.02854814
## ... Procrustes: rmse 0.0001448302 max resid 0.0003287737
## ... Similar to previous best
## Run 460 stress 0.02854805
## ... Procrustes: rmse 8.844053e-05 max resid 0.0002033502
## ... Similar to previous best
## Run 461 stress 0.04550636
## Run 462 stress 0.02854812
## ... Procrustes: rmse 0.0001470225 max resid 0.0003404426
## ... Similar to previous best
## Run 463 stress 0.02854807
## ... Procrustes: rmse 0.0001200025 max resid 0.0002756087
## ... Similar to previous best
## Run 464 stress 0.0285481
## ... Procrustes: rmse 0.0001476709 max resid 0.000338219
## ... Similar to previous best
## Run 465 stress 0.02854813
## ... Procrustes: rmse 0.0001738321 max resid 0.0004007872
## ... Similar to previous best
## Run 466 stress 0.04754104
## Run 467 stress 0.02854821
## ... Procrustes: rmse 0.0002347469 max resid 0.0005384978
## ... Similar to previous best
## Run 468 stress 0.04550656
## Run 469 stress 0.3407335
## Run 470 stress 0.02854808
## ... Procrustes: rmse 0.0001246586 max resid 0.0002865359
## ... Similar to previous best
## Run 471 stress 0.0807116
## Run 472 stress 0.04550655
## Run 473 stress 0.02854803
## ... Procrustes: rmse 1.722382e-05 max resid 3.897697e-05
## ... Similar to previous best
## Run 474 stress 0.3120127
## Run 475 stress 0.08013051
## Run 476 stress 0.02854811
## ... Procrustes: rmse 0.0001611112 max resid 0.000369794
## ... Similar to previous best
## Run 477 stress 0.02854807
## ... Procrustes: rmse 0.0001137911 max resid 0.0002605718
## ... Similar to previous best
## Run 478 stress 0.02854811
## ... Procrustes: rmse 0.0001533371 max resid 0.000350441
## ... Similar to previous best
## Run 479 stress 0.047541
## Run 480 stress 0.02854806
## ... Procrustes: rmse 8.264465e-05 max resid 0.0001876826
## ... Similar to previous best
## Run 481 stress 0.0285482
## ... Procrustes: rmse 0.0002272324 max resid 0.0005228725
## ... Similar to previous best
## Run 482 stress 0.02854811
## ... Procrustes: rmse 0.0001524663 max resid 0.0003481098
## ... Similar to previous best
## Run 483 stress 0.04754106
## Run 484 stress 0.02854815
## ... Procrustes: rmse 0.0001849667 max resid 0.0004216208
## ... Similar to previous best
## Run 485 stress 0.04754103
## Run 486 stress 0.02854806
## ... Procrustes: rmse 9.832527e-05 max resid 0.000226194
## ... Similar to previous best
## Run 487 stress 0.04550639
## Run 488 stress 0.02854803
## ... Procrustes: rmse 2.736215e-05 max resid 6.357744e-05
## ... Similar to previous best
## Run 489 stress 0.02854809
## ... Procrustes: rmse 0.0001430612 max resid 0.0003295626
## ... Similar to previous best
## Run 490 stress 0.02854814
## ... Procrustes: rmse 0.0001728513 max resid 0.0003962848
## ... Similar to previous best
## Run 491 stress 0.02854804
## ... Procrustes: rmse 4.014412e-05 max resid 6.795372e-05
## ... Similar to previous best
## Run 492 stress 0.04754112
## Run 493 stress 0.08078802
## Run 494 stress 0.02854805
## ... Procrustes: rmse 7.757183e-05 max resid 0.0001777253
## ... Similar to previous best
## Run 495 stress 0.04754106
## Run 496 stress 0.02854814
## ... Procrustes: rmse 0.0001850055 max resid 0.0004247179
## ... Similar to previous best
## Run 497 stress 0.0475411
## Run 498 stress 0.04754122
## Run 499 stress 0.0285481
## ... Procrustes: rmse 0.0001271349 max resid 0.0002920581
## ... Similar to previous best
## Run 500 stress 0.02854806
## ... Procrustes: rmse 9.887749e-05 max resid 0.0002286076
## ... Similar to previous best
## *** Best solution repeated 91 times# Stratified lakes and ocean sites
fdeso_NMDS <- metaMDS(fdeso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.047803
## Run 1 stress 0.05592913
## Run 2 stress 0.05050399
## Run 3 stress 0.05592913
## Run 4 stress 0.04780301
## ... Procrustes: rmse 1.191311e-05 max resid 2.524444e-05
## ... Similar to previous best
## Run 5 stress 0.05050399
## Run 6 stress 0.047803
## ... New best solution
## ... Procrustes: rmse 1.097827e-05 max resid 2.020363e-05
## ... Similar to previous best
## Run 7 stress 0.0610109
## Run 8 stress 0.05050403
## Run 9 stress 0.05050397
## Run 10 stress 0.05592913
## Run 11 stress 0.05592913
## Run 12 stress 0.2322761
## Run 13 stress 0.06101092
## Run 14 stress 0.047803
## ... Procrustes: rmse 1.055879e-05 max resid 1.773413e-05
## ... Similar to previous best
## Run 15 stress 0.0885735
## Run 16 stress 0.047803
## ... New best solution
## ... Procrustes: rmse 7.249244e-06 max resid 1.313461e-05
## ... Similar to previous best
## Run 17 stress 0.05050395
## Run 18 stress 0.05592913
## Run 19 stress 0.09453779
## Run 20 stress 0.05050398
## Run 21 stress 0.06101099
## Run 22 stress 0.047803
## ... Procrustes: rmse 7.242943e-06 max resid 1.319329e-05
## ... Similar to previous best
## Run 23 stress 0.047803
## ... Procrustes: rmse 2.432634e-05 max resid 4.392222e-05
## ... Similar to previous best
## Run 24 stress 0.09119622
## Run 25 stress 0.05050395
## Run 26 stress 0.04780301
## ... Procrustes: rmse 5.192163e-05 max resid 9.316472e-05
## ... Similar to previous best
## Run 27 stress 0.047803
## ... New best solution
## ... Procrustes: rmse 1.807848e-06 max resid 3.246811e-06
## ... Similar to previous best
## Run 28 stress 0.06101097
## Run 29 stress 0.04780303
## ... Procrustes: rmse 2.172818e-05 max resid 4.788566e-05
## ... Similar to previous best
## Run 30 stress 0.0885735
## Run 31 stress 0.05592913
## Run 32 stress 0.047803
## ... Procrustes: rmse 7.195801e-06 max resid 1.326227e-05
## ... Similar to previous best
## Run 33 stress 0.09930135
## Run 34 stress 0.05050396
## Run 35 stress 0.0885735
## Run 36 stress 0.09119623
## Run 37 stress 0.09119622
## Run 38 stress 0.05050397
## Run 39 stress 0.05050402
## Run 40 stress 0.05050395
## Run 41 stress 0.0610109
## Run 42 stress 0.04780302
## ... Procrustes: rmse 5.839236e-05 max resid 0.00010494
## ... Similar to previous best
## Run 43 stress 0.05592913
## Run 44 stress 0.06101096
## Run 45 stress 0.05050395
## Run 46 stress 0.05592913
## Run 47 stress 0.06101092
## Run 48 stress 0.047803
## ... Procrustes: rmse 1.689541e-05 max resid 3.006582e-05
## ... Similar to previous best
## Run 49 stress 0.047803
## ... Procrustes: rmse 7.51865e-06 max resid 1.275949e-05
## ... Similar to previous best
## Run 50 stress 0.06101095
## Run 51 stress 0.05050396
## Run 52 stress 0.05050395
## Run 53 stress 0.047803
## ... Procrustes: rmse 2.778148e-06 max resid 5.175001e-06
## ... Similar to previous best
## Run 54 stress 0.04780303
## ... Procrustes: rmse 7.403314e-05 max resid 0.0001336308
## ... Similar to previous best
## Run 55 stress 0.04780301
## ... Procrustes: rmse 2.407849e-05 max resid 3.986032e-05
## ... Similar to previous best
## Run 56 stress 0.047803
## ... Procrustes: rmse 5.541094e-06 max resid 9.428173e-06
## ... Similar to previous best
## Run 57 stress 0.09119622
## Run 58 stress 0.05050395
## Run 59 stress 0.047803
## ... Procrustes: rmse 3.905428e-06 max resid 7.246433e-06
## ... Similar to previous best
## Run 60 stress 0.05050396
## Run 61 stress 0.0610109
## Run 62 stress 0.04780301
## ... Procrustes: rmse 3.908239e-05 max resid 7.089214e-05
## ... Similar to previous best
## Run 63 stress 0.06101092
## Run 64 stress 0.05592913
## Run 65 stress 0.0610109
## Run 66 stress 0.047803
## ... Procrustes: rmse 1.62787e-05 max resid 2.88665e-05
## ... Similar to previous best
## Run 67 stress 0.08752633
## Run 68 stress 0.05592913
## Run 69 stress 0.04780302
## ... Procrustes: rmse 5.826015e-05 max resid 0.0001048889
## ... Similar to previous best
## Run 70 stress 0.04780302
## ... Procrustes: rmse 4.597595e-05 max resid 8.297368e-05
## ... Similar to previous best
## Run 71 stress 0.05592913
## Run 72 stress 0.04780301
## ... Procrustes: rmse 3.449695e-05 max resid 6.216668e-05
## ... Similar to previous best
## Run 73 stress 0.05592913
## Run 74 stress 0.05592913
## Run 75 stress 0.0885735
## Run 76 stress 0.047803
## ... Procrustes: rmse 9.403415e-07 max resid 1.670717e-06
## ... Similar to previous best
## Run 77 stress 0.05592913
## Run 78 stress 0.2759858
## Run 79 stress 0.047803
## ... Procrustes: rmse 5.025264e-06 max resid 9.206036e-06
## ... Similar to previous best
## Run 80 stress 0.05050396
## Run 81 stress 0.05050395
## Run 82 stress 0.04780302
## ... Procrustes: rmse 3.978031e-05 max resid 7.075546e-05
## ... Similar to previous best
## Run 83 stress 0.047803
## ... Procrustes: rmse 4.587261e-06 max resid 7.852931e-06
## ... Similar to previous best
## Run 84 stress 0.047803
## ... Procrustes: rmse 9.043432e-06 max resid 1.644184e-05
## ... Similar to previous best
## Run 85 stress 0.05050396
## Run 86 stress 0.05592913
## Run 87 stress 0.04780301
## ... Procrustes: rmse 3.91765e-05 max resid 7.048263e-05
## ... Similar to previous best
## Run 88 stress 0.047803
## ... Procrustes: rmse 1.860011e-05 max resid 3.386958e-05
## ... Similar to previous best
## Run 89 stress 0.05050397
## Run 90 stress 0.0610109
## Run 91 stress 0.05050396
## Run 92 stress 0.047803
## ... New best solution
## ... Procrustes: rmse 1.084225e-06 max resid 1.838043e-06
## ... Similar to previous best
## Run 93 stress 0.047803
## ... Procrustes: rmse 3.350099e-06 max resid 6.937275e-06
## ... Similar to previous best
## Run 94 stress 0.05592913
## Run 95 stress 0.047803
## ... Procrustes: rmse 5.732628e-06 max resid 1.125823e-05
## ... Similar to previous best
## Run 96 stress 0.05592914
## Run 97 stress 0.05050404
## Run 98 stress 0.09930118
## Run 99 stress 0.0972148
## Run 100 stress 0.047803
## ... Procrustes: rmse 1.622321e-05 max resid 2.908753e-05
## ... Similar to previous best
## Run 101 stress 0.08857351
## Run 102 stress 0.047803
## ... Procrustes: rmse 9.15515e-06 max resid 1.989025e-05
## ... Similar to previous best
## Run 103 stress 0.05050398
## Run 104 stress 0.06101092
## Run 105 stress 0.05592913
## Run 106 stress 0.05592913
## Run 107 stress 0.0610109
## Run 108 stress 0.047803
## ... Procrustes: rmse 4.044196e-06 max resid 7.274249e-06
## ... Similar to previous best
## Run 109 stress 0.09434663
## Run 110 stress 0.06101092
## Run 111 stress 0.08752632
## Run 112 stress 0.315012
## Run 113 stress 0.06101099
## Run 114 stress 0.05050395
## Run 115 stress 0.08857351
## Run 116 stress 0.047803
## ... Procrustes: rmse 8.692285e-06 max resid 1.511384e-05
## ... Similar to previous best
## Run 117 stress 0.05592913
## Run 118 stress 0.08857351
## Run 119 stress 0.05592913
## Run 120 stress 0.05592913
## Run 121 stress 0.047803
## ... Procrustes: rmse 2.413633e-06 max resid 3.23088e-06
## ... Similar to previous best
## Run 122 stress 0.05050402
## Run 123 stress 0.05050397
## Run 124 stress 0.05592913
## Run 125 stress 0.05050396
## Run 126 stress 0.05050395
## Run 127 stress 0.0610109
## Run 128 stress 0.05592913
## Run 129 stress 0.05592913
## Run 130 stress 0.05592913
## Run 131 stress 0.06101101
## Run 132 stress 0.047803
## ... Procrustes: rmse 6.271822e-06 max resid 1.122817e-05
## ... Similar to previous best
## Run 133 stress 0.0885735
## Run 134 stress 0.05592913
## Run 135 stress 0.047803
## ... Procrustes: rmse 1.338075e-05 max resid 2.404441e-05
## ... Similar to previous best
## Run 136 stress 0.1004322
## Run 137 stress 0.04780301
## ... Procrustes: rmse 4.121872e-05 max resid 7.289825e-05
## ... Similar to previous best
## Run 138 stress 0.047803
## ... Procrustes: rmse 4.66765e-06 max resid 7.723105e-06
## ... Similar to previous best
## Run 139 stress 0.0885735
## Run 140 stress 0.09119622
## Run 141 stress 0.047803
## ... Procrustes: rmse 1.615118e-05 max resid 2.927852e-05
## ... Similar to previous best
## Run 142 stress 0.05592913
## Run 143 stress 0.05050395
## Run 144 stress 0.06101097
## Run 145 stress 0.2755565
## Run 146 stress 0.05050395
## Run 147 stress 0.2759872
## Run 148 stress 0.047803
## ... Procrustes: rmse 8.40282e-06 max resid 1.522809e-05
## ... Similar to previous best
## Run 149 stress 0.05050396
## Run 150 stress 0.047803
## ... Procrustes: rmse 6.262152e-06 max resid 1.063629e-05
## ... Similar to previous best
## Run 151 stress 0.06101092
## Run 152 stress 0.05050395
## Run 153 stress 0.047803
## ... Procrustes: rmse 2.329848e-05 max resid 4.099716e-05
## ... Similar to previous best
## Run 154 stress 0.2755573
## Run 155 stress 0.05592913
## Run 156 stress 0.05050395
## Run 157 stress 0.05592913
## Run 158 stress 0.04780301
## ... Procrustes: rmse 4.010989e-05 max resid 7.2221e-05
## ... Similar to previous best
## Run 159 stress 0.3271648
## Run 160 stress 0.061011
## Run 161 stress 0.09119622
## Run 162 stress 0.04780302
## ... Procrustes: rmse 5.437778e-05 max resid 9.679761e-05
## ... Similar to previous best
## Run 163 stress 0.047803
## ... Procrustes: rmse 1.310589e-05 max resid 2.354588e-05
## ... Similar to previous best
## Run 164 stress 0.047803
## ... Procrustes: rmse 1.505868e-05 max resid 2.694708e-05
## ... Similar to previous best
## Run 165 stress 0.04780301
## ... Procrustes: rmse 3.277055e-05 max resid 5.872027e-05
## ... Similar to previous best
## Run 166 stress 0.06101099
## Run 167 stress 0.047803
## ... Procrustes: rmse 2.454989e-05 max resid 4.443116e-05
## ... Similar to previous best
## Run 168 stress 0.06101092
## Run 169 stress 0.05592913
## Run 170 stress 0.05592913
## Run 171 stress 0.05050402
## Run 172 stress 0.09453779
## Run 173 stress 0.047803
## ... Procrustes: rmse 7.098787e-06 max resid 1.298362e-05
## ... Similar to previous best
## Run 174 stress 0.047803
## ... Procrustes: rmse 4.151878e-06 max resid 7.335926e-06
## ... Similar to previous best
## Run 175 stress 0.047803
## ... Procrustes: rmse 1.703983e-05 max resid 3.059644e-05
## ... Similar to previous best
## Run 176 stress 0.047803
## ... Procrustes: rmse 1.774083e-05 max resid 3.22123e-05
## ... Similar to previous best
## Run 177 stress 0.05592913
## Run 178 stress 0.047803
## ... Procrustes: rmse 2.009986e-05 max resid 3.593316e-05
## ... Similar to previous best
## Run 179 stress 0.06101092
## Run 180 stress 0.05050395
## Run 181 stress 0.08752632
## Run 182 stress 0.05592913
## Run 183 stress 0.047803
## ... Procrustes: rmse 4.853688e-06 max resid 8.881181e-06
## ... Similar to previous best
## Run 184 stress 0.047803
## ... Procrustes: rmse 3.381516e-06 max resid 5.719108e-06
## ... Similar to previous best
## Run 185 stress 0.047803
## ... Procrustes: rmse 2.720287e-06 max resid 4.365878e-06
## ... Similar to previous best
## Run 186 stress 0.05050398
## Run 187 stress 0.3013613
## Run 188 stress 0.06101098
## Run 189 stress 0.0610109
## Run 190 stress 0.06101091
## Run 191 stress 0.05592913
## Run 192 stress 0.047803
## ... Procrustes: rmse 1.267969e-06 max resid 2.392101e-06
## ... Similar to previous best
## Run 193 stress 0.3046311
## Run 194 stress 0.1004322
## Run 195 stress 0.050504
## Run 196 stress 0.3046311
## Run 197 stress 0.05050399
## Run 198 stress 0.047803
## ... Procrustes: rmse 9.17781e-06 max resid 1.644584e-05
## ... Similar to previous best
## Run 199 stress 0.08752633
## Run 200 stress 0.0885735
## Run 201 stress 0.08752632
## Run 202 stress 0.09119625
## Run 203 stress 0.047803
## ... Procrustes: rmse 3.019786e-06 max resid 5.381822e-06
## ... Similar to previous best
## Run 204 stress 0.04780302
## ... Procrustes: rmse 5.618881e-05 max resid 0.0001002096
## ... Similar to previous best
## Run 205 stress 0.09119622
## Run 206 stress 0.047803
## ... Procrustes: rmse 1.61339e-05 max resid 2.90019e-05
## ... Similar to previous best
## Run 207 stress 0.047803
## ... Procrustes: rmse 2.519178e-05 max resid 4.543991e-05
## ... Similar to previous best
## Run 208 stress 0.05050397
## Run 209 stress 0.05592913
## Run 210 stress 0.06101093
## Run 211 stress 0.08752632
## Run 212 stress 0.047803
## ... Procrustes: rmse 4.128663e-06 max resid 7.324783e-06
## ... Similar to previous best
## Run 213 stress 0.05592913
## Run 214 stress 0.04780301
## ... Procrustes: rmse 3.896136e-05 max resid 7.014586e-05
## ... Similar to previous best
## Run 215 stress 0.05050398
## Run 216 stress 0.05592913
## Run 217 stress 0.04780301
## ... Procrustes: rmse 3.392922e-05 max resid 6.08055e-05
## ... Similar to previous best
## Run 218 stress 0.0610109
## Run 219 stress 0.05050404
## Run 220 stress 0.047803
## ... Procrustes: rmse 6.437463e-06 max resid 1.17264e-05
## ... Similar to previous best
## Run 221 stress 0.06101097
## Run 222 stress 0.05592913
## Run 223 stress 0.047803
## ... Procrustes: rmse 1.030399e-05 max resid 1.860842e-05
## ... Similar to previous best
## Run 224 stress 0.047803
## ... Procrustes: rmse 7.963227e-06 max resid 1.329825e-05
## ... Similar to previous best
## Run 225 stress 0.05592913
## Run 226 stress 0.09930192
## Run 227 stress 0.05050396
## Run 228 stress 0.08752632
## Run 229 stress 0.08752633
## Run 230 stress 0.05050396
## Run 231 stress 0.3407336
## Run 232 stress 0.047803
## ... Procrustes: rmse 3.420428e-06 max resid 5.554664e-06
## ... Similar to previous best
## Run 233 stress 0.05592913
## Run 234 stress 0.3046316
## Run 235 stress 0.09930133
## Run 236 stress 0.04780301
## ... Procrustes: rmse 3.210655e-05 max resid 5.792246e-05
## ... Similar to previous best
## Run 237 stress 0.05592913
## Run 238 stress 0.05050396
## Run 239 stress 0.05050395
## Run 240 stress 0.05592913
## Run 241 stress 0.047803
## ... Procrustes: rmse 6.680162e-06 max resid 1.205988e-05
## ... Similar to previous best
## Run 242 stress 0.05592913
## Run 243 stress 0.2755569
## Run 244 stress 0.047803
## ... Procrustes: rmse 5.246959e-06 max resid 9.430828e-06
## ... Similar to previous best
## Run 245 stress 0.047803
## ... Procrustes: rmse 5.955633e-06 max resid 1.101357e-05
## ... Similar to previous best
## Run 246 stress 0.09119625
## Run 247 stress 0.047803
## ... Procrustes: rmse 3.46151e-06 max resid 6.167666e-06
## ... Similar to previous best
## Run 248 stress 0.05050403
## Run 249 stress 0.06101091
## Run 250 stress 0.050504
## Run 251 stress 0.05050395
## Run 252 stress 0.05050395
## Run 253 stress 0.05050399
## Run 254 stress 0.09119625
## Run 255 stress 0.06101091
## Run 256 stress 0.047803
## ... Procrustes: rmse 8.577589e-06 max resid 1.551887e-05
## ... Similar to previous best
## Run 257 stress 0.0885735
## Run 258 stress 0.3186539
## Run 259 stress 0.0885735
## Run 260 stress 0.08752632
## Run 261 stress 0.05592913
## Run 262 stress 0.09119623
## Run 263 stress 0.047803
## ... Procrustes: rmse 1.407347e-05 max resid 2.540203e-05
## ... Similar to previous best
## Run 264 stress 0.05592913
## Run 265 stress 0.047803
## ... Procrustes: rmse 3.338157e-05 max resid 6.037475e-05
## ... Similar to previous best
## Run 266 stress 0.05050398
## Run 267 stress 0.06101092
## Run 268 stress 0.08752632
## Run 269 stress 0.047803
## ... Procrustes: rmse 5.815646e-06 max resid 1.028824e-05
## ... Similar to previous best
## Run 270 stress 0.05050395
## Run 271 stress 0.05050398
## Run 272 stress 0.09453781
## Run 273 stress 0.05592913
## Run 274 stress 0.05592913
## Run 275 stress 0.05050397
## Run 276 stress 0.04780301
## ... Procrustes: rmse 3.664598e-05 max resid 6.62516e-05
## ... Similar to previous best
## Run 277 stress 0.047803
## ... Procrustes: rmse 9.00656e-06 max resid 1.61405e-05
## ... Similar to previous best
## Run 278 stress 0.047803
## ... Procrustes: rmse 2.431215e-06 max resid 4.711429e-06
## ... Similar to previous best
## Run 279 stress 0.05592913
## Run 280 stress 0.05050396
## Run 281 stress 0.05592913
## Run 282 stress 0.05592913
## Run 283 stress 0.047803
## ... Procrustes: rmse 1.610542e-06 max resid 2.627021e-06
## ... Similar to previous best
## Run 284 stress 0.0610109
## Run 285 stress 0.06101094
## Run 286 stress 0.047803
## ... Procrustes: rmse 2.452529e-05 max resid 4.390048e-05
## ... Similar to previous best
## Run 287 stress 0.047803
## ... Procrustes: rmse 4.520512e-06 max resid 8.294545e-06
## ... Similar to previous best
## Run 288 stress 0.05050401
## Run 289 stress 0.09119622
## Run 290 stress 0.047803
## ... Procrustes: rmse 5.982432e-06 max resid 1.112715e-05
## ... Similar to previous best
## Run 291 stress 0.05050401
## Run 292 stress 0.047803
## ... Procrustes: rmse 2.832227e-05 max resid 5.078126e-05
## ... Similar to previous best
## Run 293 stress 0.05592913
## Run 294 stress 0.05050395
## Run 295 stress 0.05592913
## Run 296 stress 0.04780302
## ... Procrustes: rmse 2.996009e-05 max resid 5.535009e-05
## ... Similar to previous best
## Run 297 stress 0.05050395
## Run 298 stress 0.06101101
## Run 299 stress 0.047803
## ... Procrustes: rmse 2.542092e-05 max resid 4.608795e-05
## ... Similar to previous best
## Run 300 stress 0.05050396
## Run 301 stress 0.05592913
## Run 302 stress 0.06101091
## Run 303 stress 0.05592913
## Run 304 stress 0.06101098
## Run 305 stress 0.05592913
## Run 306 stress 0.06101093
## Run 307 stress 0.047803
## ... Procrustes: rmse 9.894877e-06 max resid 1.772133e-05
## ... Similar to previous best
## Run 308 stress 0.0610109
## Run 309 stress 0.08752632
## Run 310 stress 0.047803
## ... Procrustes: rmse 2.318738e-05 max resid 4.162784e-05
## ... Similar to previous best
## Run 311 stress 0.08857351
## Run 312 stress 0.05592913
## Run 313 stress 0.05592913
## Run 314 stress 0.08752632
## Run 315 stress 0.06101099
## Run 316 stress 0.04780301
## ... Procrustes: rmse 2.968747e-05 max resid 5.242646e-05
## ... Similar to previous best
## Run 317 stress 0.047803
## ... Procrustes: rmse 1.35997e-05 max resid 2.443716e-05
## ... Similar to previous best
## Run 318 stress 0.06101094
## Run 319 stress 0.05592913
## Run 320 stress 0.06101096
## Run 321 stress 0.047803
## ... Procrustes: rmse 1.52954e-05 max resid 2.723583e-05
## ... Similar to previous best
## Run 322 stress 0.05592913
## Run 323 stress 0.050504
## Run 324 stress 0.05592913
## Run 325 stress 0.05592913
## Run 326 stress 0.047803
## ... Procrustes: rmse 2.493283e-06 max resid 4.44067e-06
## ... Similar to previous best
## Run 327 stress 0.05050395
## Run 328 stress 0.0885735
## Run 329 stress 0.06101103
## Run 330 stress 0.0885735
## Run 331 stress 0.047803
## ... Procrustes: rmse 8.112257e-06 max resid 1.726123e-05
## ... Similar to previous best
## Run 332 stress 0.047803
## ... Procrustes: rmse 6.212075e-06 max resid 1.112559e-05
## ... Similar to previous best
## Run 333 stress 0.05592913
## Run 334 stress 0.05592913
## Run 335 stress 0.05050399
## Run 336 stress 0.047803
## ... Procrustes: rmse 4.500855e-06 max resid 7.983485e-06
## ... Similar to previous best
## Run 337 stress 0.047803
## ... Procrustes: rmse 2.537196e-05 max resid 4.513673e-05
## ... Similar to previous best
## Run 338 stress 0.05050396
## Run 339 stress 0.047803
## ... Procrustes: rmse 7.51391e-06 max resid 1.334214e-05
## ... Similar to previous best
## Run 340 stress 0.08857351
## Run 341 stress 0.047803
## ... Procrustes: rmse 2.650564e-06 max resid 5.075246e-06
## ... Similar to previous best
## Run 342 stress 0.05592913
## Run 343 stress 0.05050395
## Run 344 stress 0.05050396
## Run 345 stress 0.047803
## ... Procrustes: rmse 2.338526e-05 max resid 4.166704e-05
## ... Similar to previous best
## Run 346 stress 0.05592913
## Run 347 stress 0.09930137
## Run 348 stress 0.09119622
## Run 349 stress 0.04780303
## ... Procrustes: rmse 2.62383e-05 max resid 5.277812e-05
## ... Similar to previous best
## Run 350 stress 0.05592913
## Run 351 stress 0.05050395
## Run 352 stress 0.05592913
## Run 353 stress 0.05050395
## Run 354 stress 0.09119623
## Run 355 stress 0.06101093
## Run 356 stress 0.09119622
## Run 357 stress 0.06101094
## Run 358 stress 0.05050395
## Run 359 stress 0.05592913
## Run 360 stress 0.3013603
## Run 361 stress 0.06101092
## Run 362 stress 0.05592913
## Run 363 stress 0.047803
## ... Procrustes: rmse 2.33916e-05 max resid 4.170482e-05
## ... Similar to previous best
## Run 364 stress 0.05050399
## Run 365 stress 0.05050399
## Run 366 stress 0.047803
## ... Procrustes: rmse 5.002928e-06 max resid 8.538716e-06
## ... Similar to previous best
## Run 367 stress 0.05050395
## Run 368 stress 0.047803
## ... Procrustes: rmse 6.662976e-06 max resid 1.159416e-05
## ... Similar to previous best
## Run 369 stress 0.047803
## ... Procrustes: rmse 1.85239e-05 max resid 3.334986e-05
## ... Similar to previous best
## Run 370 stress 0.05050397
## Run 371 stress 0.05050404
## Run 372 stress 0.05592913
## Run 373 stress 0.3046311
## Run 374 stress 0.06101099
## Run 375 stress 0.2322761
## Run 376 stress 0.08752634
## Run 377 stress 0.3266727
## Run 378 stress 0.047803
## ... Procrustes: rmse 2.164468e-05 max resid 3.905418e-05
## ... Similar to previous best
## Run 379 stress 0.05592913
## Run 380 stress 0.05050395
## Run 381 stress 0.05592913
## Run 382 stress 0.05050395
## Run 383 stress 0.0885735
## Run 384 stress 0.05592913
## Run 385 stress 0.2645349
## Run 386 stress 0.05050396
## Run 387 stress 0.08752632
## Run 388 stress 0.0885735
## Run 389 stress 0.05050395
## Run 390 stress 0.04780301
## ... Procrustes: rmse 3.350377e-05 max resid 5.991201e-05
## ... Similar to previous best
## Run 391 stress 0.05592913
## Run 392 stress 0.047803
## ... Procrustes: rmse 5.441347e-06 max resid 9.951329e-06
## ... Similar to previous best
## Run 393 stress 0.09453786
## Run 394 stress 0.05050396
## Run 395 stress 0.05050396
## Run 396 stress 0.06101093
## Run 397 stress 0.047803
## ... Procrustes: rmse 3.49185e-06 max resid 6.214622e-06
## ... Similar to previous best
## Run 398 stress 0.08752632
## Run 399 stress 0.05592913
## Run 400 stress 0.04780302
## ... Procrustes: rmse 5.805655e-05 max resid 0.000104832
## ... Similar to previous best
## Run 401 stress 0.047803
## ... Procrustes: rmse 1.327575e-05 max resid 2.400433e-05
## ... Similar to previous best
## Run 402 stress 0.09721479
## Run 403 stress 0.06101098
## Run 404 stress 0.047803
## ... Procrustes: rmse 1.71993e-05 max resid 3.076522e-05
## ... Similar to previous best
## Run 405 stress 0.047803
## ... Procrustes: rmse 1.965675e-05 max resid 3.351288e-05
## ... Similar to previous best
## Run 406 stress 0.05592913
## Run 407 stress 0.09930137
## Run 408 stress 0.05592913
## Run 409 stress 0.06101092
## Run 410 stress 0.3046313
## Run 411 stress 0.09212375
## Run 412 stress 0.0610109
## Run 413 stress 0.06101098
## Run 414 stress 0.0885735
## Run 415 stress 0.09119622
## Run 416 stress 0.047803
## ... Procrustes: rmse 1.958606e-05 max resid 3.46658e-05
## ... Similar to previous best
## Run 417 stress 0.05050395
## Run 418 stress 0.05050395
## Run 419 stress 0.06101091
## Run 420 stress 0.3087187
## Run 421 stress 0.04780301
## ... Procrustes: rmse 4.041595e-05 max resid 7.293001e-05
## ... Similar to previous best
## Run 422 stress 0.08752632
## Run 423 stress 0.05050396
## Run 424 stress 0.05592913
## Run 425 stress 0.05592913
## Run 426 stress 0.08857353
## Run 427 stress 0.047803
## ... Procrustes: rmse 1.046704e-05 max resid 1.910798e-05
## ... Similar to previous best
## Run 428 stress 0.05592913
## Run 429 stress 0.09453779
## Run 430 stress 0.08857353
## Run 431 stress 0.05592913
## Run 432 stress 0.05050395
## Run 433 stress 0.04780301
## ... Procrustes: rmse 4.11326e-05 max resid 7.417422e-05
## ... Similar to previous best
## Run 434 stress 0.05592913
## Run 435 stress 0.09721448
## Run 436 stress 0.047803
## ... Procrustes: rmse 1.918413e-05 max resid 3.455402e-05
## ... Similar to previous best
## Run 437 stress 0.09453784
## Run 438 stress 0.09119622
## Run 439 stress 0.047803
## ... Procrustes: rmse 6.789811e-06 max resid 1.211364e-05
## ... Similar to previous best
## Run 440 stress 0.05050398
## Run 441 stress 0.047803
## ... Procrustes: rmse 6.03937e-06 max resid 1.088225e-05
## ... Similar to previous best
## Run 442 stress 0.06101093
## Run 443 stress 0.08752632
## Run 444 stress 0.08752632
## Run 445 stress 0.266201
## Run 446 stress 0.05592913
## Run 447 stress 0.09434693
## Run 448 stress 0.047803
## ... Procrustes: rmse 1.044922e-05 max resid 1.845635e-05
## ... Similar to previous best
## Run 449 stress 0.05592913
## Run 450 stress 0.047803
## ... Procrustes: rmse 3.546522e-06 max resid 5.870191e-06
## ... Similar to previous best
## Run 451 stress 0.05592913
## Run 452 stress 0.047803
## ... Procrustes: rmse 5.553493e-06 max resid 9.802141e-06
## ... Similar to previous best
## Run 453 stress 0.06101091
## Run 454 stress 0.047803
## ... Procrustes: rmse 7.32558e-06 max resid 1.246448e-05
## ... Similar to previous best
## Run 455 stress 0.06101091
## Run 456 stress 0.04780301
## ... Procrustes: rmse 3.743623e-05 max resid 6.681032e-05
## ... Similar to previous best
## Run 457 stress 0.05050395
## Run 458 stress 0.05592913
## Run 459 stress 0.08752632
## Run 460 stress 0.047803
## ... Procrustes: rmse 2.904861e-05 max resid 5.269781e-05
## ... Similar to previous best
## Run 461 stress 0.05050402
## Run 462 stress 0.04780301
## ... Procrustes: rmse 4.637074e-05 max resid 8.301048e-05
## ... Similar to previous best
## Run 463 stress 0.05592913
## Run 464 stress 0.08752632
## Run 465 stress 0.09119624
## Run 466 stress 0.05050395
## Run 467 stress 0.05592914
## Run 468 stress 0.05050395
## Run 469 stress 0.06101094
## Run 470 stress 0.04780301
## ... Procrustes: rmse 5.155656e-05 max resid 9.268313e-05
## ... Similar to previous best
## Run 471 stress 0.047803
## ... Procrustes: rmse 2.904493e-06 max resid 4.541089e-06
## ... Similar to previous best
## Run 472 stress 0.047803
## ... Procrustes: rmse 2.312504e-05 max resid 4.141859e-05
## ... Similar to previous best
## Run 473 stress 0.047803
## ... Procrustes: rmse 1.572539e-05 max resid 2.859241e-05
## ... Similar to previous best
## Run 474 stress 0.05050396
## Run 475 stress 0.05592913
## Run 476 stress 0.05592913
## Run 477 stress 0.047803
## ... Procrustes: rmse 3.293429e-05 max resid 5.954258e-05
## ... Similar to previous best
## Run 478 stress 0.05050401
## Run 479 stress 0.06101099
## Run 480 stress 0.047803
## ... Procrustes: rmse 1.358608e-06 max resid 2.264304e-06
## ... Similar to previous best
## Run 481 stress 0.05592913
## Run 482 stress 0.2755566
## Run 483 stress 0.05592913
## Run 484 stress 0.05050396
## Run 485 stress 0.0885735
## Run 486 stress 0.05592913
## Run 487 stress 0.047803
## ... Procrustes: rmse 6.252208e-06 max resid 1.111215e-05
## ... Similar to previous best
## Run 488 stress 0.05592913
## Run 489 stress 0.05592913
## Run 490 stress 0.047803
## ... Procrustes: rmse 3.497585e-06 max resid 6.393027e-06
## ... Similar to previous best
## Run 491 stress 0.050504
## Run 492 stress 0.05050396
## Run 493 stress 0.05050395
## Run 494 stress 0.05592913
## Run 495 stress 0.05592913
## Run 496 stress 0.04780301
## ... Procrustes: rmse 3.958731e-05 max resid 7.151201e-05
## ... Similar to previous best
## Run 497 stress 0.09119622
## Run 498 stress 0.047803
## ... Procrustes: rmse 5.111047e-06 max resid 9.00235e-06
## ... Similar to previous best
## Run 499 stress 0.06101093
## Run 500 stress 0.04780301
## ... Procrustes: rmse 4.912427e-05 max resid 8.861307e-05
## ... Similar to previous best
## *** Best solution repeated 113 times### Biogeographic
# All sites
fdb_NMDS <- metaMDS(fdb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08402375
## Run 1 stress 0.09888527
## Run 2 stress 0.09690883
## Run 3 stress 0.1118139
## Run 4 stress 0.08111521
## ... New best solution
## ... Procrustes: rmse 0.07341758 max resid 0.2713466
## Run 5 stress 0.09620777
## Run 6 stress 0.0962707
## Run 7 stress 0.08117976
## ... Procrustes: rmse 0.011352 max resid 0.0438757
## Run 8 stress 0.09932636
## Run 9 stress 0.08660801
## Run 10 stress 0.1124925
## Run 11 stress 0.08118103
## ... Procrustes: rmse 0.003898011 max resid 0.01430575
## Run 12 stress 0.108898
## Run 13 stress 0.08430133
## Run 14 stress 0.1088631
## Run 15 stress 0.08109873
## ... New best solution
## ... Procrustes: rmse 0.01049833 max resid 0.04317057
## Run 16 stress 0.09690871
## Run 17 stress 0.0843884
## Run 18 stress 0.09627059
## Run 19 stress 0.08321111
## Run 20 stress 0.111814
## Run 21 stress 0.08321112
## Run 22 stress 0.1236452
## Run 23 stress 0.08118105
## ... Procrustes: rmse 0.01081377 max resid 0.04083148
## Run 24 stress 0.08118109
## ... Procrustes: rmse 0.0108007 max resid 0.04077322
## Run 25 stress 0.08438844
## Run 26 stress 0.08109879
## ... Procrustes: rmse 9.224117e-05 max resid 0.0002452382
## ... Similar to previous best
## Run 27 stress 0.08640084
## Run 28 stress 0.09690876
## Run 29 stress 0.09935625
## Run 30 stress 0.08250941
## Run 31 stress 0.08660801
## Run 32 stress 0.08111521
## ... Procrustes: rmse 0.01050073 max resid 0.04306162
## Run 33 stress 0.114256
## Run 34 stress 0.08397261
## Run 35 stress 0.0843884
## Run 36 stress 0.08402381
## Run 37 stress 0.09627094
## Run 38 stress 0.08640084
## Run 39 stress 0.08271488
## Run 40 stress 0.1088664
## Run 41 stress 0.08109876
## ... Procrustes: rmse 6.671577e-05 max resid 0.0001773941
## ... Similar to previous best
## Run 42 stress 0.09690909
## Run 43 stress 0.1084048
## Run 44 stress 0.08284644
## Run 45 stress 0.1092151
## Run 46 stress 0.09620779
## Run 47 stress 0.09620784
## Run 48 stress 0.1088231
## Run 49 stress 0.08271486
## Run 50 stress 0.09798173
## Run 51 stress 0.1087117
## Run 52 stress 0.09935503
## Run 53 stress 0.08321119
## Run 54 stress 0.1236453
## Run 55 stress 0.08660801
## Run 56 stress 0.08236116
## Run 57 stress 0.1236455
## Run 58 stress 0.1087114
## Run 59 stress 0.09627059
## Run 60 stress 0.09629915
## Run 61 stress 0.08402375
## Run 62 stress 0.09798571
## Run 63 stress 0.08640084
## Run 64 stress 0.1088232
## Run 65 stress 0.109214
## Run 66 stress 0.08321116
## Run 67 stress 0.09620781
## Run 68 stress 0.108863
## Run 69 stress 0.08321111
## Run 70 stress 0.1084048
## Run 71 stress 0.08236117
## Run 72 stress 0.09935533
## Run 73 stress 0.08236117
## Run 74 stress 0.08640084
## Run 75 stress 0.08438842
## Run 76 stress 0.09925274
## Run 77 stress 0.08640084
## Run 78 stress 0.1147145
## Run 79 stress 0.08402376
## Run 80 stress 0.1238109
## Run 81 stress 0.1088228
## Run 82 stress 0.1084219
## Run 83 stress 0.1088981
## Run 84 stress 0.08402376
## Run 85 stress 0.08640084
## Run 86 stress 0.09627059
## Run 87 stress 0.08284645
## Run 88 stress 0.08111521
## ... Procrustes: rmse 0.01049774 max resid 0.04305049
## Run 89 stress 0.1088231
## Run 90 stress 0.08649986
## Run 91 stress 0.08321127
## Run 92 stress 0.08271486
## Run 93 stress 0.3695366
## Run 94 stress 0.09798548
## Run 95 stress 0.08402378
## Run 96 stress 0.08650008
## Run 97 stress 0.08118103
## ... Procrustes: rmse 0.01084194 max resid 0.04094997
## Run 98 stress 0.08117975
## ... Procrustes: rmse 0.004305864 max resid 0.01660371
## Run 99 stress 0.09935595
## Run 100 stress 0.1088632
## Run 101 stress 0.08117976
## ... Procrustes: rmse 0.004306957 max resid 0.01660298
## Run 102 stress 0.08660802
## Run 103 stress 0.1235488
## Run 104 stress 0.08402375
## Run 105 stress 0.08402376
## Run 106 stress 0.1084054
## Run 107 stress 0.09798198
## Run 108 stress 0.08117976
## ... Procrustes: rmse 0.004309779 max resid 0.0166026
## Run 109 stress 0.0843884
## Run 110 stress 0.09808506
## Run 111 stress 0.09932618
## Run 112 stress 0.0843884
## Run 113 stress 0.08640085
## Run 114 stress 0.08250942
## Run 115 stress 0.08438841
## Run 116 stress 0.08650007
## Run 117 stress 0.0811153
## ... Procrustes: rmse 0.01054004 max resid 0.04318893
## Run 118 stress 0.08109881
## ... Procrustes: rmse 0.0001076406 max resid 0.0002857632
## ... Similar to previous best
## Run 119 stress 0.09886394
## Run 120 stress 0.08402375
## Run 121 stress 0.08430131
## Run 122 stress 0.08321111
## Run 123 stress 0.09627071
## Run 124 stress 0.08111521
## ... Procrustes: rmse 0.01049835 max resid 0.04305509
## Run 125 stress 0.09627071
## Run 126 stress 0.0811798
## ... Procrustes: rmse 0.004321439 max resid 0.0166001
## Run 127 stress 0.1142538
## Run 128 stress 0.08660802
## Run 129 stress 0.09935586
## Run 130 stress 0.09798195
## Run 131 stress 0.08236116
## Run 132 stress 0.08640084
## Run 133 stress 0.08649989
## Run 134 stress 0.09627069
## Run 135 stress 0.09627077
## Run 136 stress 0.08111521
## ... Procrustes: rmse 0.01049485 max resid 0.04304178
## Run 137 stress 0.09690887
## Run 138 stress 0.08109873
## ... Procrustes: rmse 3.00337e-06 max resid 7.230412e-06
## ... Similar to previous best
## Run 139 stress 0.09627085
## Run 140 stress 0.08430131
## Run 141 stress 0.08117977
## ... Procrustes: rmse 0.004311341 max resid 0.01660171
## Run 142 stress 0.08109882
## ... Procrustes: rmse 0.0001028858 max resid 0.0002728396
## ... Similar to previous best
## Run 143 stress 0.09798548
## Run 144 stress 0.09935579
## Run 145 stress 0.1147027
## Run 146 stress 0.08271486
## Run 147 stress 0.09629936
## Run 148 stress 0.08111525
## ... Procrustes: rmse 0.0104657 max resid 0.04294494
## Run 149 stress 0.0962078
## Run 150 stress 0.08660801
## Run 151 stress 0.08640085
## Run 152 stress 0.08236118
## Run 153 stress 0.0994714
## Run 154 stress 0.0843884
## Run 155 stress 0.08397261
## Run 156 stress 0.0843884
## Run 157 stress 0.08640084
## Run 158 stress 0.08660801
## Run 159 stress 0.09808714
## Run 160 stress 0.1139149
## Run 161 stress 0.08271487
## Run 162 stress 0.08397264
## Run 163 stress 0.09690873
## Run 164 stress 0.08397261
## Run 165 stress 0.0827149
## Run 166 stress 0.08430131
## Run 167 stress 0.123606
## Run 168 stress 0.09935525
## Run 169 stress 0.09627064
## Run 170 stress 0.09919318
## Run 171 stress 0.1124931
## Run 172 stress 0.09913075
## Run 173 stress 0.08250956
## Run 174 stress 0.1084047
## Run 175 stress 0.08660805
## Run 176 stress 0.08117977
## ... Procrustes: rmse 0.004293627 max resid 0.01660424
## Run 177 stress 0.08402376
## Run 178 stress 0.0810988
## ... Procrustes: rmse 0.0001045664 max resid 0.0002773755
## ... Similar to previous best
## Run 179 stress 0.08402375
## Run 180 stress 0.08321116
## Run 181 stress 0.08109875
## ... Procrustes: rmse 3.686196e-05 max resid 9.718778e-05
## ... Similar to previous best
## Run 182 stress 0.08402375
## Run 183 stress 0.08271488
## Run 184 stress 0.08660802
## Run 185 stress 0.08430131
## Run 186 stress 0.08117976
## ... Procrustes: rmse 0.004301865 max resid 0.01660227
## Run 187 stress 0.08271491
## Run 188 stress 0.08117976
## ... Procrustes: rmse 0.004299598 max resid 0.01660373
## Run 189 stress 0.08250941
## Run 190 stress 0.09627058
## Run 191 stress 0.08438843
## Run 192 stress 0.08321116
## Run 193 stress 0.08271486
## Run 194 stress 0.1146389
## Run 195 stress 0.08111526
## ... Procrustes: rmse 0.0104689 max resid 0.04295234
## Run 196 stress 0.08660801
## Run 197 stress 0.09620775
## Run 198 stress 0.08650004
## Run 199 stress 0.08111521
## ... Procrustes: rmse 0.01050016 max resid 0.04305999
## Run 200 stress 0.08640084
## Run 201 stress 0.08236118
## Run 202 stress 0.0843884
## Run 203 stress 0.08402375
## Run 204 stress 0.3789361
## Run 205 stress 0.1236291
## Run 206 stress 0.1088631
## Run 207 stress 0.0827149
## Run 208 stress 0.1084221
## Run 209 stress 0.0843884
## Run 210 stress 0.08430131
## Run 211 stress 0.08284645
## Run 212 stress 0.08236118
## Run 213 stress 0.0843884
## Run 214 stress 0.09945567
## Run 215 stress 0.08321112
## Run 216 stress 0.1139145
## Run 217 stress 0.09882405
## Run 218 stress 0.09629922
## Run 219 stress 0.08250941
## Run 220 stress 0.08402378
## Run 221 stress 0.08109877
## ... Procrustes: rmse 7.125408e-05 max resid 0.0001891753
## ... Similar to previous best
## Run 222 stress 0.08640084
## Run 223 stress 0.08660801
## Run 224 stress 0.08430132
## Run 225 stress 0.08430131
## Run 226 stress 0.1088632
## Run 227 stress 0.08321111
## Run 228 stress 0.1084051
## Run 229 stress 0.1118079
## Run 230 stress 0.08118103
## ... Procrustes: rmse 0.01083629 max resid 0.04092989
## Run 231 stress 0.08111521
## ... Procrustes: rmse 0.01048525 max resid 0.04301039
## Run 232 stress 0.09798537
## Run 233 stress 0.08117976
## ... Procrustes: rmse 0.004309148 max resid 0.01660346
## Run 234 stress 0.09798542
## Run 235 stress 0.08271488
## Run 236 stress 0.08402375
## Run 237 stress 0.08640084
## Run 238 stress 0.1236455
## Run 239 stress 0.09627059
## Run 240 stress 0.108405
## Run 241 stress 0.08438842
## Run 242 stress 0.1088229
## Run 243 stress 0.08117975
## ... Procrustes: rmse 0.004302599 max resid 0.0166016
## Run 244 stress 0.08640085
## Run 245 stress 0.08430131
## Run 246 stress 0.08321111
## Run 247 stress 0.08236118
## Run 248 stress 0.08438841
## Run 249 stress 0.09620779
## Run 250 stress 0.08430131
## Run 251 stress 0.1236457
## Run 252 stress 0.1236291
## Run 253 stress 0.08430131
## Run 254 stress 0.09629916
## Run 255 stress 0.08109873
## ... Procrustes: rmse 6.680996e-06 max resid 1.739051e-05
## ... Similar to previous best
## Run 256 stress 0.08640084
## Run 257 stress 0.08321111
## Run 258 stress 0.08430133
## Run 259 stress 0.1084222
## Run 260 stress 0.08438841
## Run 261 stress 0.09629919
## Run 262 stress 0.1125377
## Run 263 stress 0.1238107
## Run 264 stress 0.08430131
## Run 265 stress 0.09629947
## Run 266 stress 0.08111525
## ... Procrustes: rmse 0.01046349 max resid 0.04293398
## Run 267 stress 0.096909
## Run 268 stress 0.08430131
## Run 269 stress 0.08236117
## Run 270 stress 0.08118103
## ... Procrustes: rmse 0.01083163 max resid 0.04090956
## Run 271 stress 0.108422
## Run 272 stress 0.08640084
## Run 273 stress 0.08236116
## Run 274 stress 0.08271488
## Run 275 stress 0.0843884
## Run 276 stress 0.08109878
## ... Procrustes: rmse 0.0001001029 max resid 0.0002687883
## ... Similar to previous best
## Run 277 stress 0.08236121
## Run 278 stress 0.08397262
## Run 279 stress 0.0865
## Run 280 stress 0.1141638
## Run 281 stress 0.09935561
## Run 282 stress 0.09627089
## Run 283 stress 0.08250943
## Run 284 stress 0.08660802
## Run 285 stress 0.08321112
## Run 286 stress 0.08430131
## Run 287 stress 0.08438841
## Run 288 stress 0.09928361
## Run 289 stress 0.09620792
## Run 290 stress 0.1087112
## Run 291 stress 0.09798545
## Run 292 stress 0.08321115
## Run 293 stress 0.08111528
## ... Procrustes: rmse 0.01053613 max resid 0.04317776
## Run 294 stress 0.08271488
## Run 295 stress 0.08271489
## Run 296 stress 0.08402376
## Run 297 stress 0.09932603
## Run 298 stress 0.09798547
## Run 299 stress 0.09808332
## Run 300 stress 0.08649999
## Run 301 stress 0.09798533
## Run 302 stress 0.0993259
## Run 303 stress 0.108863
## Run 304 stress 0.108422
## Run 305 stress 0.08430131
## Run 306 stress 0.08111522
## ... Procrustes: rmse 0.01047956 max resid 0.04299024
## Run 307 stress 0.0843884
## Run 308 stress 0.08118106
## ... Procrustes: rmse 0.01085459 max resid 0.04100611
## Run 309 stress 0.1118078
## Run 310 stress 0.1088229
## Run 311 stress 0.09620791
## Run 312 stress 0.08321111
## Run 313 stress 0.08438842
## Run 314 stress 0.09798171
## Run 315 stress 0.08117975
## ... Procrustes: rmse 0.00430537 max resid 0.01660399
## Run 316 stress 0.08236119
## Run 317 stress 0.08402375
## Run 318 stress 0.1238107
## Run 319 stress 0.08236118
## Run 320 stress 0.108823
## Run 321 stress 0.0843884
## Run 322 stress 0.09627078
## Run 323 stress 0.08236125
## Run 324 stress 0.1235491
## Run 325 stress 0.09913078
## Run 326 stress 0.08397261
## Run 327 stress 0.08271486
## Run 328 stress 0.08402375
## Run 329 stress 0.0843884
## Run 330 stress 0.09627061
## Run 331 stress 0.1118074
## Run 332 stress 0.0843884
## Run 333 stress 0.1236456
## Run 334 stress 0.1088229
## Run 335 stress 0.09798194
## Run 336 stress 0.0843884
## Run 337 stress 0.09798567
## Run 338 stress 0.1236454
## Run 339 stress 0.08117976
## ... Procrustes: rmse 0.004297421 max resid 0.01660257
## Run 340 stress 0.08321115
## Run 341 stress 0.08660801
## Run 342 stress 0.08109874
## ... Procrustes: rmse 4.258835e-05 max resid 9.749116e-05
## ... Similar to previous best
## Run 343 stress 0.1084049
## Run 344 stress 0.09690885
## Run 345 stress 0.08438841
## Run 346 stress 0.08438841
## Run 347 stress 0.08640084
## Run 348 stress 0.08271486
## Run 349 stress 0.1087113
## Run 350 stress 0.08321119
## Run 351 stress 0.1087113
## Run 352 stress 0.0827149
## Run 353 stress 0.0843884
## Run 354 stress 0.08118103
## ... Procrustes: rmse 0.01083397 max resid 0.04091977
## Run 355 stress 0.08430132
## Run 356 stress 0.08321122
## Run 357 stress 0.1236064
## Run 358 stress 0.1088633
## Run 359 stress 0.08402377
## Run 360 stress 0.08397261
## Run 361 stress 0.08118108
## ... Procrustes: rmse 0.01080434 max resid 0.04078814
## Run 362 stress 0.09690874
## Run 363 stress 0.1118078
## Run 364 stress 0.08660801
## Run 365 stress 0.08660801
## Run 366 stress 0.08402376
## Run 367 stress 0.08640084
## Run 368 stress 0.08397262
## Run 369 stress 0.08271489
## Run 370 stress 0.09928163
## Run 371 stress 0.09627061
## Run 372 stress 0.09798565
## Run 373 stress 0.08640084
## Run 374 stress 0.08402375
## Run 375 stress 0.09690878
## Run 376 stress 0.08402375
## Run 377 stress 0.08640084
## Run 378 stress 0.08649983
## Run 379 stress 0.08236117
## Run 380 stress 0.09690884
## Run 381 stress 0.08111521
## ... Procrustes: rmse 0.01050934 max resid 0.04309031
## Run 382 stress 0.08430133
## Run 383 stress 0.08111522
## ... Procrustes: rmse 0.01050697 max resid 0.04308391
## Run 384 stress 0.08118103
## ... Procrustes: rmse 0.01082285 max resid 0.04087129
## Run 385 stress 0.1084049
## Run 386 stress 0.09627059
## Run 387 stress 0.08402375
## Run 388 stress 0.09629912
## Run 389 stress 0.09945583
## Run 390 stress 0.1139148
## Run 391 stress 0.08402375
## Run 392 stress 0.1084221
## Run 393 stress 0.08117976
## ... Procrustes: rmse 0.004306955 max resid 0.0166037
## Run 394 stress 0.09928391
## Run 395 stress 0.1088232
## Run 396 stress 0.08402375
## Run 397 stress 0.09629918
## Run 398 stress 0.1084053
## Run 399 stress 0.08284647
## Run 400 stress 0.1238108
## Run 401 stress 0.1236453
## Run 402 stress 0.08111521
## ... Procrustes: rmse 0.010487 max resid 0.04301672
## Run 403 stress 0.108405
## Run 404 stress 0.08397262
## Run 405 stress 0.09798177
## Run 406 stress 0.08438841
## Run 407 stress 0.08109874
## ... Procrustes: rmse 4.816943e-05 max resid 0.0001267452
## ... Similar to previous best
## Run 408 stress 0.09629945
## Run 409 stress 0.09888525
## Run 410 stress 0.08430131
## Run 411 stress 0.08109873
## ... New best solution
## ... Procrustes: rmse 9.025221e-06 max resid 1.644357e-05
## ... Similar to previous best
## Run 412 stress 0.09808246
## Run 413 stress 0.08397262
## Run 414 stress 0.08660802
## Run 415 stress 0.08111522
## ... Procrustes: rmse 0.01050773 max resid 0.04308182
## Run 416 stress 0.09629922
## Run 417 stress 0.108422
## Run 418 stress 0.08660801
## Run 419 stress 0.08284644
## Run 420 stress 0.09690887
## Run 421 stress 0.1118139
## Run 422 stress 0.08430131
## Run 423 stress 0.09627058
## Run 424 stress 0.08250947
## Run 425 stress 0.08397261
## Run 426 stress 0.09882419
## Run 427 stress 0.08250941
## Run 428 stress 0.08117986
## ... Procrustes: rmse 0.004329401 max resid 0.01659218
## Run 429 stress 0.08402376
## Run 430 stress 0.08397261
## Run 431 stress 0.08111521
## ... Procrustes: rmse 0.01050383 max resid 0.04307319
## Run 432 stress 0.08321116
## Run 433 stress 0.08250948
## Run 434 stress 0.09640561
## Run 435 stress 0.099456
## Run 436 stress 0.08321116
## Run 437 stress 0.1088226
## Run 438 stress 0.08430131
## Run 439 stress 0.108405
## Run 440 stress 0.09627062
## Run 441 stress 0.09627075
## Run 442 stress 0.108898
## Run 443 stress 0.08271489
## Run 444 stress 0.108405
## Run 445 stress 0.09627078
## Run 446 stress 0.09629916
## Run 447 stress 0.08250948
## Run 448 stress 0.1088983
## Run 449 stress 0.09629942
## Run 450 stress 0.08271488
## Run 451 stress 0.08397263
## Run 452 stress 0.09798563
## Run 453 stress 0.08111521
## ... Procrustes: rmse 0.01049186 max resid 0.04303705
## Run 454 stress 0.108422
## Run 455 stress 0.09629939
## Run 456 stress 0.08650002
## Run 457 stress 0.08118105
## ... Procrustes: rmse 0.01081254 max resid 0.04082978
## Run 458 stress 0.0843884
## Run 459 stress 0.1236455
## Run 460 stress 0.08236124
## Run 461 stress 0.08250942
## Run 462 stress 0.09690884
## Run 463 stress 0.08402375
## Run 464 stress 0.3750929
## Run 465 stress 0.0825095
## Run 466 stress 0.09627084
## Run 467 stress 0.08321111
## Run 468 stress 0.1087114
## Run 469 stress 0.08321119
## Run 470 stress 0.08271487
## Run 471 stress 0.08438841
## Run 472 stress 0.0994723
## Run 473 stress 0.08118107
## ... Procrustes: rmse 0.01080553 max resid 0.04080067
## Run 474 stress 0.1236452
## Run 475 stress 0.0962993
## Run 476 stress 0.08660802
## Run 477 stress 0.08236123
## Run 478 stress 0.08271486
## Run 479 stress 0.09947205
## Run 480 stress 0.1236294
## Run 481 stress 0.1119847
## Run 482 stress 0.08660801
## Run 483 stress 0.08236116
## Run 484 stress 0.1087113
## Run 485 stress 0.1118075
## Run 486 stress 0.09629916
## Run 487 stress 0.08660801
## Run 488 stress 0.08118103
## ... Procrustes: rmse 0.01083795 max resid 0.04094069
## Run 489 stress 0.08397261
## Run 490 stress 0.1119846
## Run 491 stress 0.08430131
## Run 492 stress 0.0964055
## Run 493 stress 0.08430131
## Run 494 stress 0.0979853
## Run 495 stress 0.09629934
## Run 496 stress 0.09919372
## Run 497 stress 0.0843884
## Run 498 stress 0.0843884
## Run 499 stress 0.08118103
## ... Procrustes: rmse 0.01082499 max resid 0.04088618
## Run 500 stress 0.09620781
## *** Best solution repeated 1 times# Mixed and stratified lakes
fdbms_NMDS <- metaMDS(fdbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.03166186
## Run 1 stress 0.02851209
## ... New best solution
## ... Procrustes: rmse 0.07922733 max resid 0.1693005
## Run 2 stress 0.03168762
## Run 3 stress 0.0316618
## Run 4 stress 0.0285121
## ... Procrustes: rmse 1.514296e-05 max resid 2.972683e-05
## ... Similar to previous best
## Run 5 stress 0.0316618
## Run 6 stress 0.02851513
## ... Procrustes: rmse 0.001267185 max resid 0.003806004
## ... Similar to previous best
## Run 7 stress 0.03166178
## Run 8 stress 0.33414
## Run 9 stress 0.02535429
## ... New best solution
## ... Procrustes: rmse 0.04756364 max resid 0.1370097
## Run 10 stress 0.03168753
## Run 11 stress 0.05806135
## Run 12 stress 0.03166179
## Run 13 stress 0.06371746
## Run 14 stress 0.05806124
## Run 15 stress 0.06350014
## Run 16 stress 0.02851513
## Run 17 stress 0.02535428
## ... New best solution
## ... Procrustes: rmse 3.108744e-05 max resid 6.186312e-05
## ... Similar to previous best
## Run 18 stress 0.02851215
## Run 19 stress 0.06349877
## Run 20 stress 0.03168755
## Run 21 stress 0.03168753
## Run 22 stress 0.05806316
## Run 23 stress 0.03168757
## Run 24 stress 0.06371749
## Run 25 stress 0.0285123
## Run 26 stress 0.03166172
## Run 27 stress 0.03166178
## Run 28 stress 0.0253836
## ... Procrustes: rmse 0.001831452 max resid 0.00548686
## ... Similar to previous best
## Run 29 stress 0.02535429
## ... Procrustes: rmse 2.638356e-05 max resid 5.289705e-05
## ... Similar to previous best
## Run 30 stress 0.02851507
## Run 31 stress 0.0316617
## Run 32 stress 0.03168758
## Run 33 stress 0.02851209
## Run 34 stress 0.05806143
## Run 35 stress 0.02851217
## Run 36 stress 0.05806141
## Run 37 stress 0.02535429
## ... Procrustes: rmse 2.244448e-05 max resid 4.450746e-05
## ... Similar to previous best
## Run 38 stress 0.03168762
## Run 39 stress 0.03166183
## Run 40 stress 0.02851223
## Run 41 stress 0.02538362
## ... Procrustes: rmse 0.001830715 max resid 0.005501741
## ... Similar to previous best
## Run 42 stress 0.02535429
## ... Procrustes: rmse 2.172187e-05 max resid 3.571366e-05
## ... Similar to previous best
## Run 43 stress 0.03166187
## Run 44 stress 0.0316875
## Run 45 stress 0.03168766
## Run 46 stress 0.03166173
## Run 47 stress 0.03168764
## Run 48 stress 0.0253543
## ... Procrustes: rmse 2.92409e-05 max resid 5.655612e-05
## ... Similar to previous best
## Run 49 stress 0.0316876
## Run 50 stress 0.0634989
## Run 51 stress 0.02535428
## ... New best solution
## ... Procrustes: rmse 5.900016e-06 max resid 1.27082e-05
## ... Similar to previous best
## Run 52 stress 0.02851217
## Run 53 stress 0.0316617
## Run 54 stress 0.02851233
## Run 55 stress 0.0285121
## Run 56 stress 0.02851208
## Run 57 stress 0.03168762
## Run 58 stress 0.03166173
## Run 59 stress 0.02851216
## Run 60 stress 0.02851213
## Run 61 stress 0.06371732
## Run 62 stress 0.03166178
## Run 63 stress 0.0285121
## Run 64 stress 0.05806333
## Run 65 stress 0.06372592
## Run 66 stress 0.06371731
## Run 67 stress 0.02851511
## Run 68 stress 0.02851215
## Run 69 stress 0.0316618
## Run 70 stress 0.03168752
## Run 71 stress 0.02851215
## Run 72 stress 0.03168749
## Run 73 stress 0.03168758
## Run 74 stress 0.03166171
## Run 75 stress 0.02851211
## Run 76 stress 0.05806327
## Run 77 stress 0.2628417
## Run 78 stress 0.02538361
## ... Procrustes: rmse 0.001830692 max resid 0.005497565
## ... Similar to previous best
## Run 79 stress 0.02535429
## ... Procrustes: rmse 3.000102e-05 max resid 6.011935e-05
## ... Similar to previous best
## Run 80 stress 0.06371979
## Run 81 stress 0.02851209
## Run 82 stress 0.03168767
## Run 83 stress 0.05806123
## Run 84 stress 0.03168749
## Run 85 stress 0.0253543
## ... Procrustes: rmse 4.2481e-05 max resid 8.989359e-05
## ... Similar to previous best
## Run 86 stress 0.02851209
## Run 87 stress 0.05806123
## Run 88 stress 0.02851208
## Run 89 stress 0.0253836
## ... Procrustes: rmse 0.001830469 max resid 0.005490058
## ... Similar to previous best
## Run 90 stress 0.03166181
## Run 91 stress 0.0285151
## Run 92 stress 0.02851215
## Run 93 stress 0.02851506
## Run 94 stress 0.02851217
## Run 95 stress 0.02535428
## ... Procrustes: rmse 7.843544e-06 max resid 1.43372e-05
## ... Similar to previous best
## Run 96 stress 0.02851212
## Run 97 stress 0.03166174
## Run 98 stress 0.03168751
## Run 99 stress 0.05806142
## Run 100 stress 0.05806317
## Run 101 stress 0.03168772
## Run 102 stress 0.03166177
## Run 103 stress 0.03168761
## Run 104 stress 0.02851513
## Run 105 stress 0.0580633
## Run 106 stress 0.05806343
## Run 107 stress 0.06371978
## Run 108 stress 0.03168764
## Run 109 stress 0.06371981
## Run 110 stress 0.02851216
## Run 111 stress 0.03168762
## Run 112 stress 0.05806127
## Run 113 stress 0.02538361
## ... Procrustes: rmse 0.001830498 max resid 0.005496827
## ... Similar to previous best
## Run 114 stress 0.03166183
## Run 115 stress 0.06349935
## Run 116 stress 0.02535429
## ... Procrustes: rmse 2.695217e-05 max resid 5.867927e-05
## ... Similar to previous best
## Run 117 stress 0.02851506
## Run 118 stress 0.0316875
## Run 119 stress 0.02851222
## Run 120 stress 0.03168758
## Run 121 stress 0.02538359
## ... Procrustes: rmse 0.001832479 max resid 0.005464221
## ... Similar to previous best
## Run 122 stress 0.0637173
## Run 123 stress 0.02538359
## ... Procrustes: rmse 0.001830991 max resid 0.005481569
## ... Similar to previous best
## Run 124 stress 0.06349853
## Run 125 stress 0.05806325
## Run 126 stress 0.03168751
## Run 127 stress 0.06349955
## Run 128 stress 0.05806136
## Run 129 stress 0.03166174
## Run 130 stress 0.03168756
## Run 131 stress 0.02538361
## ... Procrustes: rmse 0.001830464 max resid 0.005496608
## ... Similar to previous best
## Run 132 stress 0.05806123
## Run 133 stress 0.06349903
## Run 134 stress 0.0635
## Run 135 stress 0.06349853
## Run 136 stress 0.06371736
## Run 137 stress 0.02538359
## ... Procrustes: rmse 0.00183402 max resid 0.005464012
## ... Similar to previous best
## Run 138 stress 0.02851511
## Run 139 stress 0.02851504
## Run 140 stress 0.0253836
## ... Procrustes: rmse 0.001831658 max resid 0.005482236
## ... Similar to previous best
## Run 141 stress 0.0316617
## Run 142 stress 0.02851218
## Run 143 stress 0.03168759
## Run 144 stress 0.02535429
## ... Procrustes: rmse 3.522934e-05 max resid 7.173562e-05
## ... Similar to previous best
## Run 145 stress 0.0637198
## Run 146 stress 0.0253543
## ... Procrustes: rmse 4.281438e-05 max resid 9.304005e-05
## ... Similar to previous best
## Run 147 stress 0.02538358
## ... Procrustes: rmse 0.001831859 max resid 0.005466564
## ... Similar to previous best
## Run 148 stress 0.03168766
## Run 149 stress 0.06349991
## Run 150 stress 0.02535428
## ... Procrustes: rmse 2.031218e-05 max resid 4.262152e-05
## ... Similar to previous best
## Run 151 stress 0.03168749
## Run 152 stress 0.03166181
## Run 153 stress 0.03168758
## Run 154 stress 0.02851508
## Run 155 stress 0.02851209
## Run 156 stress 0.05806328
## Run 157 stress 0.02851505
## Run 158 stress 0.03166174
## Run 159 stress 0.05806137
## Run 160 stress 0.02538359
## ... Procrustes: rmse 0.00183137 max resid 0.005474215
## ... Similar to previous best
## Run 161 stress 0.06350012
## Run 162 stress 0.02538359
## ... Procrustes: rmse 0.001834885 max resid 0.005440279
## ... Similar to previous best
## Run 163 stress 0.06371982
## Run 164 stress 0.03168756
## Run 165 stress 0.03166177
## Run 166 stress 0.03168767
## Run 167 stress 0.02851209
## Run 168 stress 0.05806127
## Run 169 stress 0.06349985
## Run 170 stress 0.02851207
## Run 171 stress 0.05806321
## Run 172 stress 0.03168768
## Run 173 stress 0.06371997
## Run 174 stress 0.02851213
## Run 175 stress 0.05806327
## Run 176 stress 0.02851207
## Run 177 stress 0.05806316
## Run 178 stress 0.02538358
## ... Procrustes: rmse 0.001832777 max resid 0.00545537
## ... Similar to previous best
## Run 179 stress 0.05806125
## Run 180 stress 0.03166172
## Run 181 stress 0.02851213
## Run 182 stress 0.02538361
## ... Procrustes: rmse 0.001831256 max resid 0.005469912
## ... Similar to previous best
## Run 183 stress 0.05806135
## Run 184 stress 0.03168758
## Run 185 stress 0.02535429
## ... Procrustes: rmse 2.305199e-05 max resid 3.912405e-05
## ... Similar to previous best
## Run 186 stress 0.02851507
## Run 187 stress 0.02538358
## ... Procrustes: rmse 0.001832168 max resid 0.005463448
## ... Similar to previous best
## Run 188 stress 0.02538359
## ... Procrustes: rmse 0.001831279 max resid 0.00548199
## ... Similar to previous best
## Run 189 stress 0.02538358
## ... Procrustes: rmse 0.001832133 max resid 0.005466809
## ... Similar to previous best
## Run 190 stress 0.0316618
## Run 191 stress 0.02535432
## ... Procrustes: rmse 6.769411e-05 max resid 0.0001369824
## ... Similar to previous best
## Run 192 stress 0.06349983
## Run 193 stress 0.03166172
## Run 194 stress 0.05806132
## Run 195 stress 0.03166176
## Run 196 stress 0.06349928
## Run 197 stress 0.03166183
## Run 198 stress 0.02538358
## ... Procrustes: rmse 0.001833236 max resid 0.005453989
## ... Similar to previous best
## Run 199 stress 0.02535431
## ... Procrustes: rmse 5.191173e-05 max resid 0.0001077756
## ... Similar to previous best
## Run 200 stress 0.03166174
## Run 201 stress 0.3546862
## Run 202 stress 0.03168752
## Run 203 stress 0.0316618
## Run 204 stress 0.02851208
## Run 205 stress 0.02851509
## Run 206 stress 0.05806134
## Run 207 stress 0.0580613
## Run 208 stress 0.02851504
## Run 209 stress 0.02851512
## Run 210 stress 0.02538359
## ... Procrustes: rmse 0.001831127 max resid 0.005481408
## ... Similar to previous best
## Run 211 stress 0.02851507
## Run 212 stress 0.03168749
## Run 213 stress 0.06371734
## Run 214 stress 0.03168765
## Run 215 stress 0.0316618
## Run 216 stress 0.3473318
## Run 217 stress 0.0316876
## Run 218 stress 0.03168759
## Run 219 stress 0.03166177
## Run 220 stress 0.03168759
## Run 221 stress 0.06371736
## Run 222 stress 0.0253836
## ... Procrustes: rmse 0.001830666 max resid 0.005493253
## ... Similar to previous best
## Run 223 stress 0.02535429
## ... Procrustes: rmse 3.244693e-05 max resid 6.565e-05
## ... Similar to previous best
## Run 224 stress 0.03168751
## Run 225 stress 0.02538358
## ... Procrustes: rmse 0.001831589 max resid 0.005463416
## ... Similar to previous best
## Run 226 stress 0.02851213
## Run 227 stress 0.02851213
## Run 228 stress 0.02538359
## ... Procrustes: rmse 0.001831788 max resid 0.005470091
## ... Similar to previous best
## Run 229 stress 0.02851511
## Run 230 stress 0.02535428
## ... Procrustes: rmse 2.025532e-05 max resid 4.157459e-05
## ... Similar to previous best
## Run 231 stress 0.0285151
## Run 232 stress 0.02535429
## ... Procrustes: rmse 3.183561e-05 max resid 6.53925e-05
## ... Similar to previous best
## Run 233 stress 0.03168754
## Run 234 stress 0.02538361
## ... Procrustes: rmse 0.001830389 max resid 0.005496527
## ... Similar to previous best
## Run 235 stress 0.06349915
## Run 236 stress 0.02538358
## ... Procrustes: rmse 0.001833855 max resid 0.005444263
## ... Similar to previous best
## Run 237 stress 0.02851505
## Run 238 stress 0.06371737
## Run 239 stress 0.03168757
## Run 240 stress 0.0253836
## ... Procrustes: rmse 0.001830369 max resid 0.005488817
## ... Similar to previous best
## Run 241 stress 0.02851504
## Run 242 stress 0.02851512
## Run 243 stress 0.02851211
## Run 244 stress 0.02535428
## ... Procrustes: rmse 3.606138e-06 max resid 5.350879e-06
## ... Similar to previous best
## Run 245 stress 0.02538358
## ... Procrustes: rmse 0.00183321 max resid 0.005462097
## ... Similar to previous best
## Run 246 stress 0.02535429
## ... Procrustes: rmse 3.644123e-05 max resid 7.440469e-05
## ... Similar to previous best
## Run 247 stress 0.02851512
## Run 248 stress 0.02851213
## Run 249 stress 0.02851214
## Run 250 stress 0.02851209
## Run 251 stress 0.06349866
## Run 252 stress 0.06349951
## Run 253 stress 0.02535429
## ... Procrustes: rmse 3.226369e-05 max resid 6.476581e-05
## ... Similar to previous best
## Run 254 stress 0.0253543
## ... Procrustes: rmse 4.331683e-05 max resid 7.70267e-05
## ... Similar to previous best
## Run 255 stress 0.06349891
## Run 256 stress 0.02851506
## Run 257 stress 0.02535429
## ... Procrustes: rmse 3.090988e-05 max resid 6.307064e-05
## ... Similar to previous best
## Run 258 stress 0.3620359
## Run 259 stress 0.05806125
## Run 260 stress 0.02851209
## Run 261 stress 0.03166178
## Run 262 stress 0.02851212
## Run 263 stress 0.02851512
## Run 264 stress 0.06349937
## Run 265 stress 0.0316876
## Run 266 stress 0.03168755
## Run 267 stress 0.02535429
## ... Procrustes: rmse 2.418447e-05 max resid 4.916784e-05
## ... Similar to previous best
## Run 268 stress 0.05806328
## Run 269 stress 0.02851517
## Run 270 stress 0.03168752
## Run 271 stress 0.02851218
## Run 272 stress 0.05806129
## Run 273 stress 0.03166181
## Run 274 stress 0.02851513
## Run 275 stress 0.03168749
## Run 276 stress 0.05806135
## Run 277 stress 0.02535429
## ... Procrustes: rmse 3.167425e-05 max resid 6.039304e-05
## ... Similar to previous best
## Run 278 stress 0.03168751
## Run 279 stress 0.0316875
## Run 280 stress 0.02851214
## Run 281 stress 0.03168769
## Run 282 stress 0.03168765
## Run 283 stress 0.02851508
## Run 284 stress 0.02851504
## Run 285 stress 0.02535429
## ... Procrustes: rmse 3.272734e-05 max resid 6.651416e-05
## ... Similar to previous best
## Run 286 stress 0.06349985
## Run 287 stress 0.02538358
## ... Procrustes: rmse 0.001832315 max resid 0.005464208
## ... Similar to previous best
## Run 288 stress 0.02851505
## Run 289 stress 0.02535429
## ... Procrustes: rmse 3.03901e-05 max resid 5.156245e-05
## ... Similar to previous best
## Run 290 stress 0.02851512
## Run 291 stress 0.02851507
## Run 292 stress 0.2294979
## Run 293 stress 0.03168762
## Run 294 stress 0.02851214
## Run 295 stress 0.02538359
## ... Procrustes: rmse 0.001831853 max resid 0.005464928
## ... Similar to previous best
## Run 296 stress 0.06349861
## Run 297 stress 0.03166179
## Run 298 stress 0.06349852
## Run 299 stress 0.02851215
## Run 300 stress 0.03168761
## Run 301 stress 0.05806317
## Run 302 stress 0.03168749
## Run 303 stress 0.03168755
## Run 304 stress 0.03166182
## Run 305 stress 0.0285121
## Run 306 stress 0.03168751
## Run 307 stress 0.2294979
## Run 308 stress 0.02538358
## ... Procrustes: rmse 0.00183158 max resid 0.005472102
## ... Similar to previous best
## Run 309 stress 0.02851209
## Run 310 stress 0.02851506
## Run 311 stress 0.02538361
## ... Procrustes: rmse 0.001830754 max resid 0.005499348
## ... Similar to previous best
## Run 312 stress 0.0580632
## Run 313 stress 0.05806128
## Run 314 stress 0.02851222
## Run 315 stress 0.03166171
## Run 316 stress 0.02851514
## Run 317 stress 0.02535428
## ... Procrustes: rmse 1.659907e-05 max resid 3.362968e-05
## ... Similar to previous best
## Run 318 stress 0.03166174
## Run 319 stress 0.06371742
## Run 320 stress 0.02535428
## ... Procrustes: rmse 1.882694e-05 max resid 3.822137e-05
## ... Similar to previous best
## Run 321 stress 0.02851211
## Run 322 stress 0.03168769
## Run 323 stress 0.05806123
## Run 324 stress 0.03168763
## Run 325 stress 0.02535429
## ... Procrustes: rmse 3.797989e-05 max resid 7.706553e-05
## ... Similar to previous best
## Run 326 stress 0.0285151
## Run 327 stress 0.0316618
## Run 328 stress 0.03168758
## Run 329 stress 0.02851508
## Run 330 stress 0.02538359
## ... Procrustes: rmse 0.001831348 max resid 0.005474535
## ... Similar to previous best
## Run 331 stress 0.06349906
## Run 332 stress 0.06371992
## Run 333 stress 0.03168753
## Run 334 stress 0.06349979
## Run 335 stress 0.03166176
## Run 336 stress 0.03166176
## Run 337 stress 0.03168768
## Run 338 stress 0.0285121
## Run 339 stress 0.05806125
## Run 340 stress 0.0634994
## Run 341 stress 0.05806147
## Run 342 stress 0.02851212
## Run 343 stress 0.0316618
## Run 344 stress 0.06349952
## Run 345 stress 0.02851513
## Run 346 stress 0.05806317
## Run 347 stress 0.03168756
## Run 348 stress 0.06371981
## Run 349 stress 0.05806316
## Run 350 stress 0.03166177
## Run 351 stress 0.03168749
## Run 352 stress 0.02851214
## Run 353 stress 0.03166174
## Run 354 stress 0.0285121
## Run 355 stress 0.02851214
## Run 356 stress 0.03166174
## Run 357 stress 0.06349986
## Run 358 stress 0.06349894
## Run 359 stress 0.03166178
## Run 360 stress 0.06349977
## Run 361 stress 0.02538777
## ... Procrustes: rmse 0.001398432 max resid 0.004023446
## ... Similar to previous best
## Run 362 stress 0.02851507
## Run 363 stress 0.03166174
## Run 364 stress 0.03168761
## Run 365 stress 0.05806338
## Run 366 stress 0.02851508
## Run 367 stress 0.03168752
## Run 368 stress 0.03168759
## Run 369 stress 0.06349854
## Run 370 stress 0.0285121
## Run 371 stress 0.0316617
## Run 372 stress 0.02538359
## ... Procrustes: rmse 0.001831363 max resid 0.005474545
## ... Similar to previous best
## Run 373 stress 0.02851212
## Run 374 stress 0.03168755
## Run 375 stress 0.06371984
## Run 376 stress 0.03166174
## Run 377 stress 0.0253543
## ... Procrustes: rmse 3.620161e-05 max resid 7.869543e-05
## ... Similar to previous best
## Run 378 stress 0.02851512
## Run 379 stress 0.02538359
## ... Procrustes: rmse 0.001833639 max resid 0.005485341
## ... Similar to previous best
## Run 380 stress 0.03166171
## Run 381 stress 0.02851214
## Run 382 stress 0.03166173
## Run 383 stress 0.02535428
## ... Procrustes: rmse 1.132787e-05 max resid 2.281775e-05
## ... Similar to previous best
## Run 384 stress 0.03168749
## Run 385 stress 0.02851508
## Run 386 stress 0.02851511
## Run 387 stress 0.06349868
## Run 388 stress 0.02851513
## Run 389 stress 0.02535428
## ... Procrustes: rmse 6.44659e-06 max resid 1.319763e-05
## ... Similar to previous best
## Run 390 stress 0.3622592
## Run 391 stress 0.0580633
## Run 392 stress 0.02851215
## Run 393 stress 0.03168749
## Run 394 stress 0.06349933
## Run 395 stress 0.02851508
## Run 396 stress 0.02538358
## ... Procrustes: rmse 0.001834002 max resid 0.005445392
## ... Similar to previous best
## Run 397 stress 0.03166171
## Run 398 stress 0.03168769
## Run 399 stress 0.02535428
## ... Procrustes: rmse 1.633978e-05 max resid 3.252825e-05
## ... Similar to previous best
## Run 400 stress 0.03168753
## Run 401 stress 0.02535429
## ... Procrustes: rmse 2.964208e-05 max resid 5.983201e-05
## ... Similar to previous best
## Run 402 stress 0.0316617
## Run 403 stress 0.05806132
## Run 404 stress 0.06371731
## Run 405 stress 0.06349896
## Run 406 stress 0.06371748
## Run 407 stress 0.06349969
## Run 408 stress 0.02851507
## Run 409 stress 0.02535432
## ... Procrustes: rmse 6.054215e-05 max resid 0.0001241452
## ... Similar to previous best
## Run 410 stress 0.02851214
## Run 411 stress 0.03166174
## Run 412 stress 0.0580613
## Run 413 stress 0.02851212
## Run 414 stress 0.02851208
## Run 415 stress 0.06371978
## Run 416 stress 0.02538358
## ... Procrustes: rmse 0.001832032 max resid 0.005465115
## ... Similar to previous best
## Run 417 stress 0.02851511
## Run 418 stress 0.05806126
## Run 419 stress 0.06371732
## Run 420 stress 0.0253543
## ... Procrustes: rmse 4.006433e-05 max resid 8.307193e-05
## ... Similar to previous best
## Run 421 stress 0.0253836
## ... Procrustes: rmse 0.001831906 max resid 0.005471928
## ... Similar to previous best
## Run 422 stress 0.03168765
## Run 423 stress 0.02851511
## Run 424 stress 0.02851218
## Run 425 stress 0.02851217
## Run 426 stress 0.02538359
## ... Procrustes: rmse 0.001831833 max resid 0.005464976
## ... Similar to previous best
## Run 427 stress 0.0316617
## Run 428 stress 0.02538362
## ... Procrustes: rmse 0.001830175 max resid 0.005500347
## ... Similar to previous best
## Run 429 stress 0.03168749
## Run 430 stress 0.02851506
## Run 431 stress 0.05806326
## Run 432 stress 0.02851506
## Run 433 stress 0.02535429
## ... Procrustes: rmse 3.906272e-05 max resid 6.912478e-05
## ... Similar to previous best
## Run 434 stress 0.02851508
## Run 435 stress 0.02851216
## Run 436 stress 0.03168754
## Run 437 stress 0.02851512
## Run 438 stress 0.03168757
## Run 439 stress 0.05806316
## Run 440 stress 0.0253836
## ... Procrustes: rmse 0.001831111 max resid 0.005486364
## ... Similar to previous best
## Run 441 stress 0.02851227
## Run 442 stress 0.05806324
## Run 443 stress 0.0316617
## Run 444 stress 0.02538358
## ... Procrustes: rmse 0.001832121 max resid 0.005468915
## ... Similar to previous best
## Run 445 stress 0.0253543
## ... Procrustes: rmse 4.414572e-05 max resid 9.029298e-05
## ... Similar to previous best
## Run 446 stress 0.03166177
## Run 447 stress 0.03168766
## Run 448 stress 0.06349945
## Run 449 stress 0.02535431
## ... Procrustes: rmse 5.3912e-05 max resid 0.0001101012
## ... Similar to previous best
## Run 450 stress 0.02851214
## Run 451 stress 0.05806317
## Run 452 stress 0.02851218
## Run 453 stress 0.02851511
## Run 454 stress 0.02851208
## Run 455 stress 0.0253836
## ... Procrustes: rmse 0.001835897 max resid 0.005437249
## ... Similar to previous best
## Run 456 stress 0.03168749
## Run 457 stress 0.02851211
## Run 458 stress 0.02851212
## Run 459 stress 0.0253543
## ... Procrustes: rmse 4.222429e-05 max resid 8.609955e-05
## ... Similar to previous best
## Run 460 stress 0.02538359
## ... Procrustes: rmse 0.001831543 max resid 0.005476589
## ... Similar to previous best
## Run 461 stress 0.0285151
## Run 462 stress 0.02535431
## ... Procrustes: rmse 5.926941e-05 max resid 0.0001214827
## ... Similar to previous best
## Run 463 stress 0.02851212
## Run 464 stress 0.02851213
## Run 465 stress 0.06349903
## Run 466 stress 0.02851506
## Run 467 stress 0.02851504
## Run 468 stress 0.02851508
## Run 469 stress 0.06349893
## Run 470 stress 0.02538358
## ... Procrustes: rmse 0.001832505 max resid 0.005461714
## ... Similar to previous best
## Run 471 stress 0.02538361
## ... Procrustes: rmse 0.001830363 max resid 0.005499605
## ... Similar to previous best
## Run 472 stress 0.0316875
## Run 473 stress 0.03166172
## Run 474 stress 0.02851211
## Run 475 stress 0.03168757
## Run 476 stress 0.03168753
## Run 477 stress 0.03166178
## Run 478 stress 0.02851509
## Run 479 stress 0.03168749
## Run 480 stress 0.02851213
## Run 481 stress 0.02535428
## ... Procrustes: rmse 1.898772e-05 max resid 3.872611e-05
## ... Similar to previous best
## Run 482 stress 0.02538362
## ... Procrustes: rmse 0.001830027 max resid 0.005502889
## ... Similar to previous best
## Run 483 stress 0.05806136
## Run 484 stress 0.02851506
## Run 485 stress 0.02851215
## Run 486 stress 0.0253836
## ... Procrustes: rmse 0.001830581 max resid 0.005490723
## ... Similar to previous best
## Run 487 stress 0.0316617
## Run 488 stress 0.02851213
## Run 489 stress 0.02538358
## ... Procrustes: rmse 0.001832742 max resid 0.005456316
## ... Similar to previous best
## Run 490 stress 0.02851509
## Run 491 stress 0.02538361
## ... Procrustes: rmse 0.001837543 max resid 0.005414984
## ... Similar to previous best
## Run 492 stress 0.05806318
## Run 493 stress 0.02851508
## Run 494 stress 0.06349943
## Run 495 stress 0.02535429
## ... Procrustes: rmse 2.899477e-05 max resid 5.702369e-05
## ... Similar to previous best
## Run 496 stress 0.02851513
## Run 497 stress 0.03166172
## Run 498 stress 0.06349958
## Run 499 stress 0.03166185
## Run 500 stress 0.05806334
## *** Best solution repeated 88 times# Ocean sites and mixed lakes
fdbom_NMDS <- metaMDS(fdbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.04023331
## Run 1 stress 0.04023339
## ... Procrustes: rmse 0.0001187313 max resid 0.0001831005
## ... Similar to previous best
## Run 2 stress 0.04083702
## Run 3 stress 0.04023333
## ... Procrustes: rmse 4.74298e-05 max resid 7.359276e-05
## ... Similar to previous best
## Run 4 stress 0.04083704
## Run 5 stress 0.04023341
## ... Procrustes: rmse 0.0001301914 max resid 0.0002021424
## ... Similar to previous best
## Run 6 stress 0.109097
## Run 7 stress 0.04023332
## ... Procrustes: rmse 4.039619e-05 max resid 6.257615e-05
## ... Similar to previous best
## Run 8 stress 0.04023331
## ... New best solution
## ... Procrustes: rmse 4.801912e-05 max resid 8.504421e-05
## ... Similar to previous best
## Run 9 stress 0.0402334
## ... Procrustes: rmse 0.000125597 max resid 0.0001978565
## ... Similar to previous best
## Run 10 stress 0.04023335
## ... Procrustes: rmse 8.175437e-05 max resid 0.0001308679
## ... Similar to previous best
## Run 11 stress 0.04083702
## Run 12 stress 0.04083704
## Run 13 stress 0.04023337
## ... Procrustes: rmse 0.0001370377 max resid 0.0002226323
## ... Similar to previous best
## Run 14 stress 0.04023331
## ... Procrustes: rmse 5.736005e-05 max resid 9.85945e-05
## ... Similar to previous best
## Run 15 stress 0.04083704
## Run 16 stress 0.04023334
## ... Procrustes: rmse 7.184637e-05 max resid 0.0001154179
## ... Similar to previous best
## Run 17 stress 0.04023337
## ... Procrustes: rmse 9.011874e-05 max resid 0.000142411
## ... Similar to previous best
## Run 18 stress 0.04023339
## ... Procrustes: rmse 0.0001230276 max resid 0.0001940702
## ... Similar to previous best
## Run 19 stress 0.04023335
## ... Procrustes: rmse 8.076518e-05 max resid 0.00012859
## ... Similar to previous best
## Run 20 stress 0.04083707
## Run 21 stress 0.04083702
## Run 22 stress 0.04023337
## ... Procrustes: rmse 0.0001041851 max resid 0.0001648941
## ... Similar to previous best
## Run 23 stress 0.04023333
## ... Procrustes: rmse 5.9724e-05 max resid 9.653942e-05
## ... Similar to previous best
## Run 24 stress 0.04023339
## ... Procrustes: rmse 9.089591e-05 max resid 0.0001444226
## ... Similar to previous best
## Run 25 stress 0.04083705
## Run 26 stress 0.04083702
## Run 27 stress 0.04023337
## ... Procrustes: rmse 0.0001453502 max resid 0.0002355294
## ... Similar to previous best
## Run 28 stress 0.04083703
## Run 29 stress 0.04023331
## ... New best solution
## ... Procrustes: rmse 2.78394e-05 max resid 5.204075e-05
## ... Similar to previous best
## Run 30 stress 0.04023335
## ... Procrustes: rmse 0.0001157195 max resid 0.0001795751
## ... Similar to previous best
## Run 31 stress 0.04083704
## Run 32 stress 0.04023337
## ... Procrustes: rmse 0.0001346592 max resid 0.000218378
## ... Similar to previous best
## Run 33 stress 0.04083703
## Run 34 stress 0.04083702
## Run 35 stress 0.04083702
## Run 36 stress 0.04083702
## Run 37 stress 0.04023334
## ... Procrustes: rmse 8.202198e-05 max resid 0.0001270593
## ... Similar to previous best
## Run 38 stress 0.04083703
## Run 39 stress 0.04083702
## Run 40 stress 0.04023331
## ... Procrustes: rmse 2.764634e-05 max resid 4.398069e-05
## ... Similar to previous best
## Run 41 stress 0.04023337
## ... Procrustes: rmse 0.0001204234 max resid 0.0001855804
## ... Similar to previous best
## Run 42 stress 0.04023342
## ... Procrustes: rmse 0.0001651489 max resid 0.0002559896
## ... Similar to previous best
## Run 43 stress 0.04083703
## Run 44 stress 0.04083707
## Run 45 stress 0.04023332
## ... Procrustes: rmse 5.040942e-05 max resid 7.853528e-05
## ... Similar to previous best
## Run 46 stress 0.04083704
## Run 47 stress 0.04023331
## ... Procrustes: rmse 3.941318e-05 max resid 6.08381e-05
## ... Similar to previous best
## Run 48 stress 0.04023341
## ... Procrustes: rmse 0.0001563171 max resid 0.000243037
## ... Similar to previous best
## Run 49 stress 0.04083702
## Run 50 stress 0.04083703
## Run 51 stress 0.04083703
## Run 52 stress 0.0402334
## ... Procrustes: rmse 0.0001635312 max resid 0.0002542286
## ... Similar to previous best
## Run 53 stress 0.04083703
## Run 54 stress 0.04083703
## Run 55 stress 0.04083702
## Run 56 stress 0.04023343
## ... Procrustes: rmse 0.0001716212 max resid 0.0002664846
## ... Similar to previous best
## Run 57 stress 0.04083703
## Run 58 stress 0.04023338
## ... Procrustes: rmse 0.0001366796 max resid 0.000212554
## ... Similar to previous best
## Run 59 stress 0.04083706
## Run 60 stress 0.04023334
## ... Procrustes: rmse 8.265487e-05 max resid 0.0001280417
## ... Similar to previous best
## Run 61 stress 0.04023337
## ... Procrustes: rmse 0.0001240576 max resid 0.0001923602
## ... Similar to previous best
## Run 62 stress 0.04023331
## ... Procrustes: rmse 5.055041e-05 max resid 7.852309e-05
## ... Similar to previous best
## Run 63 stress 0.04083702
## Run 64 stress 0.04083703
## Run 65 stress 0.04023332
## ... Procrustes: rmse 7.06227e-05 max resid 0.0001095354
## ... Similar to previous best
## Run 66 stress 0.04083704
## Run 67 stress 0.04083702
## Run 68 stress 0.0402334
## ... Procrustes: rmse 0.0001460206 max resid 0.0002256159
## ... Similar to previous best
## Run 69 stress 0.04083705
## Run 70 stress 0.3329613
## Run 71 stress 0.0402334
## ... Procrustes: rmse 0.0001490882 max resid 0.000231996
## ... Similar to previous best
## Run 72 stress 0.04023334
## ... Procrustes: rmse 0.0001010297 max resid 0.0001570567
## ... Similar to previous best
## Run 73 stress 0.04023332
## ... Procrustes: rmse 6.134434e-05 max resid 9.524567e-05
## ... Similar to previous best
## Run 74 stress 0.04023336
## ... Procrustes: rmse 0.0001012532 max resid 0.0001568808
## ... Similar to previous best
## Run 75 stress 0.04083704
## Run 76 stress 0.04023339
## ... Procrustes: rmse 0.0001456735 max resid 0.000232754
## ... Similar to previous best
## Run 77 stress 0.04023332
## ... Procrustes: rmse 6.11653e-05 max resid 9.429714e-05
## ... Similar to previous best
## Run 78 stress 0.04023342
## ... Procrustes: rmse 0.000163007 max resid 0.0002523333
## ... Similar to previous best
## Run 79 stress 0.109096
## Run 80 stress 0.04023338
## ... Procrustes: rmse 0.0001321253 max resid 0.0002050322
## ... Similar to previous best
## Run 81 stress 0.04083702
## Run 82 stress 0.04083703
## Run 83 stress 0.04023335
## ... Procrustes: rmse 0.0001106748 max resid 0.0001719983
## ... Similar to previous best
## Run 84 stress 0.04023333
## ... Procrustes: rmse 7.05055e-05 max resid 0.0001091095
## ... Similar to previous best
## Run 85 stress 0.04023343
## ... Procrustes: rmse 0.0001742304 max resid 0.000269673
## ... Similar to previous best
## Run 86 stress 0.04083702
## Run 87 stress 0.04083704
## Run 88 stress 0.04083702
## Run 89 stress 0.04023332
## ... Procrustes: rmse 4.315491e-05 max resid 6.622367e-05
## ... Similar to previous best
## Run 90 stress 0.04023335
## ... Procrustes: rmse 9.994011e-05 max resid 0.0001564659
## ... Similar to previous best
## Run 91 stress 0.04023338
## ... Procrustes: rmse 0.0001216618 max resid 0.000189088
## ... Similar to previous best
## Run 92 stress 0.0402334
## ... Procrustes: rmse 0.0001607261 max resid 0.0002498629
## ... Similar to previous best
## Run 93 stress 0.04023335
## ... Procrustes: rmse 0.0001048791 max resid 0.0001620989
## ... Similar to previous best
## Run 94 stress 0.04023343
## ... Procrustes: rmse 0.0001565767 max resid 0.0002427095
## ... Similar to previous best
## Run 95 stress 0.04083704
## Run 96 stress 0.04083704
## Run 97 stress 0.04083705
## Run 98 stress 0.04023333
## ... Procrustes: rmse 7.810999e-05 max resid 0.0001216668
## ... Similar to previous best
## Run 99 stress 0.04083702
## Run 100 stress 0.04083705
## Run 101 stress 0.04023335
## ... Procrustes: rmse 0.0001131702 max resid 0.0001760536
## ... Similar to previous best
## Run 102 stress 0.04083704
## Run 103 stress 0.04083707
## Run 104 stress 0.04023334
## ... Procrustes: rmse 0.0001024943 max resid 0.0001594827
## ... Similar to previous best
## Run 105 stress 0.04023333
## ... Procrustes: rmse 7.949322e-05 max resid 0.0001235959
## ... Similar to previous best
## Run 106 stress 0.04083706
## Run 107 stress 0.04023343
## ... Procrustes: rmse 0.000170784 max resid 0.0002758927
## ... Similar to previous best
## Run 108 stress 0.04023336
## ... Procrustes: rmse 0.0001291414 max resid 0.0002007827
## ... Similar to previous best
## Run 109 stress 0.04023333
## ... Procrustes: rmse 6.998919e-05 max resid 0.0001089519
## ... Similar to previous best
## Run 110 stress 0.04083705
## Run 111 stress 0.04083702
## Run 112 stress 0.04023336
## ... Procrustes: rmse 0.0001196044 max resid 0.0001856543
## ... Similar to previous best
## Run 113 stress 0.04083702
## Run 114 stress 0.04023341
## ... Procrustes: rmse 0.0001472904 max resid 0.0002277339
## ... Similar to previous best
## Run 115 stress 0.04083707
## Run 116 stress 0.04083702
## Run 117 stress 0.04083704
## Run 118 stress 0.04023342
## ... Procrustes: rmse 0.0001639423 max resid 0.0002549495
## ... Similar to previous best
## Run 119 stress 0.04083702
## Run 120 stress 0.04023332
## ... Procrustes: rmse 7.176107e-05 max resid 0.0001116065
## ... Similar to previous best
## Run 121 stress 0.04023336
## ... Procrustes: rmse 0.0001200307 max resid 0.0001861605
## ... Similar to previous best
## Run 122 stress 0.04083703
## Run 123 stress 0.04083705
## Run 124 stress 0.04023332
## ... Procrustes: rmse 4.484572e-05 max resid 6.864331e-05
## ... Similar to previous best
## Run 125 stress 0.04023337
## ... Procrustes: rmse 0.00013065 max resid 0.0002019696
## ... Similar to previous best
## Run 126 stress 0.04083702
## Run 127 stress 0.04023332
## ... Procrustes: rmse 4.282734e-05 max resid 6.627756e-05
## ... Similar to previous best
## Run 128 stress 0.04083704
## Run 129 stress 0.04083702
## Run 130 stress 0.04083703
## Run 131 stress 0.04023332
## ... Procrustes: rmse 6.804774e-05 max resid 0.0001058637
## ... Similar to previous best
## Run 132 stress 0.04083705
## Run 133 stress 0.04023342
## ... Procrustes: rmse 0.0001732101 max resid 0.000269595
## ... Similar to previous best
## Run 134 stress 0.04023341
## ... Procrustes: rmse 0.0001674582 max resid 0.0002601492
## ... Similar to previous best
## Run 135 stress 0.04083706
## Run 136 stress 0.04083702
## Run 137 stress 0.04083705
## Run 138 stress 0.04083702
## Run 139 stress 0.04083702
## Run 140 stress 0.04083703
## Run 141 stress 0.04083702
## Run 142 stress 0.04083704
## Run 143 stress 0.04083704
## Run 144 stress 0.04083702
## Run 145 stress 0.04023331
## ... Procrustes: rmse 4.266125e-05 max resid 6.552302e-05
## ... Similar to previous best
## Run 146 stress 0.04023335
## ... Procrustes: rmse 0.0001102079 max resid 0.0001709583
## ... Similar to previous best
## Run 147 stress 0.04083705
## Run 148 stress 0.04083704
## Run 149 stress 0.04083706
## Run 150 stress 0.04083702
## Run 151 stress 0.04083706
## Run 152 stress 0.04083706
## Run 153 stress 0.04083706
## Run 154 stress 0.04083706
## Run 155 stress 0.04023337
## ... Procrustes: rmse 0.0001199015 max resid 0.0001864118
## ... Similar to previous best
## Run 156 stress 0.04023337
## ... Procrustes: rmse 0.0001286844 max resid 0.0002001653
## ... Similar to previous best
## Run 157 stress 0.04083703
## Run 158 stress 0.04083705
## Run 159 stress 0.04083703
## Run 160 stress 0.04023332
## ... Procrustes: rmse 2.330922e-05 max resid 3.543854e-05
## ... Similar to previous best
## Run 161 stress 0.04023337
## ... Procrustes: rmse 0.0001326566 max resid 0.0002058759
## ... Similar to previous best
## Run 162 stress 0.04023333
## ... Procrustes: rmse 4.318947e-05 max resid 6.681455e-05
## ... Similar to previous best
## Run 163 stress 0.04023332
## ... Procrustes: rmse 5.433464e-05 max resid 8.463533e-05
## ... Similar to previous best
## Run 164 stress 0.04083705
## Run 165 stress 0.04083705
## Run 166 stress 0.04023334
## ... Procrustes: rmse 9.29117e-05 max resid 0.0001439015
## ... Similar to previous best
## Run 167 stress 0.0402334
## ... Procrustes: rmse 0.0001651871 max resid 0.0002563251
## ... Similar to previous best
## Run 168 stress 0.04083702
## Run 169 stress 0.04023331
## ... Procrustes: rmse 2.439936e-06 max resid 4.720837e-06
## ... Similar to previous best
## Run 170 stress 0.04083704
## Run 171 stress 0.04023336
## ... Procrustes: rmse 0.0001058338 max resid 0.0001643732
## ... Similar to previous best
## Run 172 stress 0.04023331
## ... Procrustes: rmse 2.139226e-05 max resid 3.363908e-05
## ... Similar to previous best
## Run 173 stress 0.04083707
## Run 174 stress 0.04083704
## Run 175 stress 0.04083702
## Run 176 stress 0.04083702
## Run 177 stress 0.04083702
## Run 178 stress 0.04023341
## ... Procrustes: rmse 0.000169913 max resid 0.0002624487
## ... Similar to previous best
## Run 179 stress 0.04083705
## Run 180 stress 0.04083704
## Run 181 stress 0.04083702
## Run 182 stress 0.04023331
## ... Procrustes: rmse 3.937627e-05 max resid 6.113035e-05
## ... Similar to previous best
## Run 183 stress 0.04023339
## ... Procrustes: rmse 0.0001426641 max resid 0.0002212264
## ... Similar to previous best
## Run 184 stress 0.04023331
## ... Procrustes: rmse 2.218848e-05 max resid 3.459903e-05
## ... Similar to previous best
## Run 185 stress 0.04083704
## Run 186 stress 0.04083702
## Run 187 stress 0.04083706
## Run 188 stress 0.04023332
## ... Procrustes: rmse 6.194197e-05 max resid 9.629883e-05
## ... Similar to previous best
## Run 189 stress 0.04083707
## Run 190 stress 0.1085563
## Run 191 stress 0.04083707
## Run 192 stress 0.04023336
## ... Procrustes: rmse 0.0001226198 max resid 0.0001908305
## ... Similar to previous best
## Run 193 stress 0.04023333
## ... Procrustes: rmse 7.70568e-05 max resid 0.0001199461
## ... Similar to previous best
## Run 194 stress 0.04083705
## Run 195 stress 0.3532054
## Run 196 stress 0.04023333
## ... Procrustes: rmse 7.37071e-05 max resid 0.0001143564
## ... Similar to previous best
## Run 197 stress 0.04023332
## ... Procrustes: rmse 2.078258e-05 max resid 3.065366e-05
## ... Similar to previous best
## Run 198 stress 0.04083702
## Run 199 stress 0.04023331
## ... Procrustes: rmse 2.547304e-05 max resid 3.95455e-05
## ... Similar to previous best
## Run 200 stress 0.04023332
## ... Procrustes: rmse 6.362499e-05 max resid 9.805309e-05
## ... Similar to previous best
## Run 201 stress 0.04023339
## ... Procrustes: rmse 0.0001494766 max resid 0.0002325651
## ... Similar to previous best
## Run 202 stress 0.04083702
## Run 203 stress 0.04023332
## ... Procrustes: rmse 6.817339e-05 max resid 0.0001057859
## ... Similar to previous best
## Run 204 stress 0.04083705
## Run 205 stress 0.04083705
## Run 206 stress 0.04083702
## Run 207 stress 0.04083703
## Run 208 stress 0.04023343
## ... Procrustes: rmse 0.0001616156 max resid 0.0002493264
## ... Similar to previous best
## Run 209 stress 0.04023341
## ... Procrustes: rmse 0.0001623864 max resid 0.0002524071
## ... Similar to previous best
## Run 210 stress 0.04083705
## Run 211 stress 0.04083703
## Run 212 stress 0.04023331
## ... Procrustes: rmse 2.84402e-05 max resid 4.321319e-05
## ... Similar to previous best
## Run 213 stress 0.04023337
## ... Procrustes: rmse 0.000136663 max resid 0.0002124429
## ... Similar to previous best
## Run 214 stress 0.1085568
## Run 215 stress 0.3234447
## Run 216 stress 0.04083703
## Run 217 stress 0.04083704
## Run 218 stress 0.04083703
## Run 219 stress 0.04023338
## ... Procrustes: rmse 0.0001461559 max resid 0.0002260927
## ... Similar to previous best
## Run 220 stress 0.04083704
## Run 221 stress 0.04023342
## ... Procrustes: rmse 0.0001801011 max resid 0.0002803276
## ... Similar to previous best
## Run 222 stress 0.04083702
## Run 223 stress 0.04023336
## ... Procrustes: rmse 0.0001251353 max resid 0.0001945151
## ... Similar to previous best
## Run 224 stress 0.04023343
## ... Procrustes: rmse 0.0001726992 max resid 0.0002695976
## ... Similar to previous best
## Run 225 stress 0.04083702
## Run 226 stress 0.04083704
## Run 227 stress 0.04083704
## Run 228 stress 0.04083702
## Run 229 stress 0.04023334
## ... Procrustes: rmse 8.313947e-05 max resid 0.000128084
## ... Similar to previous best
## Run 230 stress 0.04023331
## ... Procrustes: rmse 2.222886e-05 max resid 3.453311e-05
## ... Similar to previous best
## Run 231 stress 0.04023335
## ... Procrustes: rmse 0.0001082187 max resid 0.0001673739
## ... Similar to previous best
## Run 232 stress 0.04023338
## ... Procrustes: rmse 0.0001313957 max resid 0.0002044548
## ... Similar to previous best
## Run 233 stress 0.04083706
## Run 234 stress 0.04083703
## Run 235 stress 0.04023333
## ... Procrustes: rmse 7.05829e-05 max resid 0.0001099758
## ... Similar to previous best
## Run 236 stress 0.04023331
## ... Procrustes: rmse 1.262204e-05 max resid 2.056848e-05
## ... Similar to previous best
## Run 237 stress 0.04023332
## ... Procrustes: rmse 7.102171e-05 max resid 0.0001104752
## ... Similar to previous best
## Run 238 stress 0.04023334
## ... Procrustes: rmse 9.876652e-05 max resid 0.0001537799
## ... Similar to previous best
## Run 239 stress 0.04023331
## ... Procrustes: rmse 2.484757e-05 max resid 3.866405e-05
## ... Similar to previous best
## Run 240 stress 0.04023339
## ... Procrustes: rmse 0.000155428 max resid 0.0002417268
## ... Similar to previous best
## Run 241 stress 0.04023333
## ... Procrustes: rmse 5.925496e-05 max resid 0.0001303297
## ... Similar to previous best
## Run 242 stress 0.04023344
## ... Procrustes: rmse 0.0001884028 max resid 0.0002925823
## ... Similar to previous best
## Run 243 stress 0.04023336
## ... Procrustes: rmse 0.0001040932 max resid 0.0001616253
## ... Similar to previous best
## Run 244 stress 0.04023337
## ... Procrustes: rmse 0.00012557 max resid 0.0001954934
## ... Similar to previous best
## Run 245 stress 0.04023331
## ... Procrustes: rmse 7.279474e-06 max resid 1.140584e-05
## ... Similar to previous best
## Run 246 stress 0.04023331
## ... Procrustes: rmse 1.697871e-05 max resid 2.569463e-05
## ... Similar to previous best
## Run 247 stress 0.04083702
## Run 248 stress 0.04083702
## Run 249 stress 0.04083702
## Run 250 stress 0.04023339
## ... Procrustes: rmse 0.0001551002 max resid 0.0002414364
## ... Similar to previous best
## Run 251 stress 0.04023341
## ... Procrustes: rmse 0.0001677033 max resid 0.0002609753
## ... Similar to previous best
## Run 252 stress 0.04083703
## Run 253 stress 0.04083702
## Run 254 stress 0.04023338
## ... Procrustes: rmse 0.0001414832 max resid 0.0002184909
## ... Similar to previous best
## Run 255 stress 0.04023338
## ... Procrustes: rmse 0.0001415974 max resid 0.0002204275
## ... Similar to previous best
## Run 256 stress 0.04083702
## Run 257 stress 0.04083705
## Run 258 stress 0.04023336
## ... Procrustes: rmse 0.0001061087 max resid 0.0001645289
## ... Similar to previous best
## Run 259 stress 0.04083705
## Run 260 stress 0.04083702
## Run 261 stress 0.04083702
## Run 262 stress 0.04083706
## Run 263 stress 0.04023332
## ... Procrustes: rmse 6.203351e-05 max resid 9.628117e-05
## ... Similar to previous best
## Run 264 stress 0.04083706
## Run 265 stress 0.04023331
## ... Procrustes: rmse 8.182815e-06 max resid 1.289376e-05
## ... Similar to previous best
## Run 266 stress 0.04023334
## ... Procrustes: rmse 0.0001038528 max resid 0.0001612466
## ... Similar to previous best
## Run 267 stress 0.04083703
## Run 268 stress 0.04083703
## Run 269 stress 0.04023331
## ... Procrustes: rmse 1.392491e-05 max resid 2.245703e-05
## ... Similar to previous best
## Run 270 stress 0.04083707
## Run 271 stress 0.04023339
## ... Procrustes: rmse 0.0001407866 max resid 0.0002177785
## ... Similar to previous best
## Run 272 stress 0.04083705
## Run 273 stress 0.04023331
## ... Procrustes: rmse 1.603643e-05 max resid 2.4773e-05
## ... Similar to previous best
## Run 274 stress 0.04083705
## Run 275 stress 0.04083702
## Run 276 stress 0.04083703
## Run 277 stress 0.3532051
## Run 278 stress 0.04023336
## ... Procrustes: rmse 0.0001225705 max resid 0.0001905714
## ... Similar to previous best
## Run 279 stress 0.04023336
## ... Procrustes: rmse 0.0001123111 max resid 0.0001746013
## ... Similar to previous best
## Run 280 stress 0.04023333
## ... Procrustes: rmse 8.080092e-05 max resid 0.0001257438
## ... Similar to previous best
## Run 281 stress 0.04083704
## Run 282 stress 0.04023338
## ... Procrustes: rmse 0.0001377503 max resid 0.0002137764
## ... Similar to previous best
## Run 283 stress 0.04083702
## Run 284 stress 0.04083704
## Run 285 stress 0.04023332
## ... Procrustes: rmse 7.292138e-05 max resid 0.0001129827
## ... Similar to previous best
## Run 286 stress 0.04023333
## ... Procrustes: rmse 6.232588e-05 max resid 9.704666e-05
## ... Similar to previous best
## Run 287 stress 0.04023333
## ... Procrustes: rmse 2.045188e-05 max resid 3.869896e-05
## ... Similar to previous best
## Run 288 stress 0.04083702
## Run 289 stress 0.2395761
## Run 290 stress 0.04023337
## ... Procrustes: rmse 0.0001348797 max resid 0.0002093881
## ... Similar to previous best
## Run 291 stress 0.04083702
## Run 292 stress 0.04023337
## ... Procrustes: rmse 0.0001310921 max resid 0.0002038542
## ... Similar to previous best
## Run 293 stress 0.0402334
## ... Procrustes: rmse 0.0001621221 max resid 0.0002510778
## ... Similar to previous best
## Run 294 stress 0.04023332
## ... Procrustes: rmse 4.381793e-05 max resid 6.826926e-05
## ... Similar to previous best
## Run 295 stress 0.04023335
## ... Procrustes: rmse 0.0001051166 max resid 0.0001626531
## ... Similar to previous best
## Run 296 stress 0.04083702
## Run 297 stress 0.04023336
## ... Procrustes: rmse 0.0001298014 max resid 0.0002021131
## ... Similar to previous best
## Run 298 stress 0.04083704
## Run 299 stress 0.04023334
## ... Procrustes: rmse 9.417539e-05 max resid 0.0001465213
## ... Similar to previous best
## Run 300 stress 0.04023333
## ... Procrustes: rmse 8.611115e-05 max resid 0.000133869
## ... Similar to previous best
## Run 301 stress 0.04023338
## ... Procrustes: rmse 0.0001288045 max resid 0.0002001612
## ... Similar to previous best
## Run 302 stress 0.04023338
## ... Procrustes: rmse 0.0001401722 max resid 0.0002175563
## ... Similar to previous best
## Run 303 stress 0.04083703
## Run 304 stress 0.04083702
## Run 305 stress 0.04083702
## Run 306 stress 0.04023333
## ... Procrustes: rmse 7.693406e-05 max resid 0.0001194282
## ... Similar to previous best
## Run 307 stress 0.04023335
## ... Procrustes: rmse 0.0001132266 max resid 0.0001761649
## ... Similar to previous best
## Run 308 stress 0.04023339
## ... Procrustes: rmse 0.0001415376 max resid 0.000219997
## ... Similar to previous best
## Run 309 stress 0.04023333
## ... Procrustes: rmse 7.913038e-05 max resid 0.000123067
## ... Similar to previous best
## Run 310 stress 0.04083704
## Run 311 stress 0.04023331
## ... Procrustes: rmse 3.853044e-05 max resid 5.968303e-05
## ... Similar to previous best
## Run 312 stress 0.04083707
## Run 313 stress 0.04083702
## Run 314 stress 0.04023338
## ... Procrustes: rmse 0.0001325291 max resid 0.0002048293
## ... Similar to previous best
## Run 315 stress 0.04023332
## ... Procrustes: rmse 5.957202e-05 max resid 9.267048e-05
## ... Similar to previous best
## Run 316 stress 0.04023334
## ... Procrustes: rmse 8.550765e-05 max resid 0.0001329308
## ... Similar to previous best
## Run 317 stress 0.04023335
## ... Procrustes: rmse 0.0001140725 max resid 0.0001774618
## ... Similar to previous best
## Run 318 stress 0.04023337
## ... Procrustes: rmse 0.0001194064 max resid 0.0001849684
## ... Similar to previous best
## Run 319 stress 0.04083703
## Run 320 stress 0.04023332
## ... Procrustes: rmse 5.127836e-05 max resid 7.966385e-05
## ... Similar to previous best
## Run 321 stress 0.0402334
## ... Procrustes: rmse 0.0001602556 max resid 0.0002492146
## ... Similar to previous best
## Run 322 stress 0.04023339
## ... Procrustes: rmse 0.0001533173 max resid 0.0002385014
## ... Similar to previous best
## Run 323 stress 0.04023333
## ... Procrustes: rmse 6.1274e-05 max resid 9.346754e-05
## ... Similar to previous best
## Run 324 stress 0.04023337
## ... Procrustes: rmse 0.0001328949 max resid 0.0002067455
## ... Similar to previous best
## Run 325 stress 0.1085696
## Run 326 stress 0.04023335
## ... Procrustes: rmse 0.000114958 max resid 0.0001789316
## ... Similar to previous best
## Run 327 stress 0.04023337
## ... Procrustes: rmse 0.0001171266 max resid 0.0001820218
## ... Similar to previous best
## Run 328 stress 0.04083703
## Run 329 stress 0.04023337
## ... Procrustes: rmse 0.0001245379 max resid 0.0001935668
## ... Similar to previous best
## Run 330 stress 0.04023335
## ... Procrustes: rmse 0.0001145735 max resid 0.0001781796
## ... Similar to previous best
## Run 331 stress 0.0402334
## ... Procrustes: rmse 0.0001495018 max resid 0.0002327248
## ... Similar to previous best
## Run 332 stress 0.04023332
## ... Procrustes: rmse 5.883147e-05 max resid 9.142966e-05
## ... Similar to previous best
## Run 333 stress 0.0402334
## ... Procrustes: rmse 0.0001374511 max resid 0.0002124063
## ... Similar to previous best
## Run 334 stress 0.04083703
## Run 335 stress 0.04083702
## Run 336 stress 0.04023342
## ... Procrustes: rmse 0.0001683742 max resid 0.0002607578
## ... Similar to previous best
## Run 337 stress 0.04083706
## Run 338 stress 0.04023339
## ... Procrustes: rmse 0.0001455155 max resid 0.0002263361
## ... Similar to previous best
## Run 339 stress 0.04083702
## Run 340 stress 0.04023337
## ... Procrustes: rmse 0.0001222668 max resid 0.0001890904
## ... Similar to previous best
## Run 341 stress 0.04023333
## ... Procrustes: rmse 8.673419e-05 max resid 0.0001348672
## ... Similar to previous best
## Run 342 stress 0.04083702
## Run 343 stress 0.04083706
## Run 344 stress 0.04083704
## Run 345 stress 0.04023331
## ... Procrustes: rmse 4.903182e-05 max resid 7.620616e-05
## ... Similar to previous best
## Run 346 stress 0.04083705
## Run 347 stress 0.3242664
## Run 348 stress 0.04083702
## Run 349 stress 0.04023332
## ... Procrustes: rmse 4.054665e-05 max resid 6.091641e-05
## ... Similar to previous best
## Run 350 stress 0.04083703
## Run 351 stress 0.04023331
## ... Procrustes: rmse 3.871272e-05 max resid 6.032443e-05
## ... Similar to previous best
## Run 352 stress 0.04083705
## Run 353 stress 0.04023332
## ... Procrustes: rmse 4.464524e-05 max resid 6.900797e-05
## ... Similar to previous best
## Run 354 stress 0.04083703
## Run 355 stress 0.04083703
## Run 356 stress 0.04023341
## ... Procrustes: rmse 0.0001608366 max resid 0.0002493666
## ... Similar to previous best
## Run 357 stress 0.04023334
## ... Procrustes: rmse 9.495615e-05 max resid 0.0001476312
## ... Similar to previous best
## Run 358 stress 0.04023333
## ... Procrustes: rmse 7.57675e-05 max resid 0.0001177912
## ... Similar to previous best
## Run 359 stress 0.04023339
## ... Procrustes: rmse 0.0001191881 max resid 0.0001823773
## ... Similar to previous best
## Run 360 stress 0.04083702
## Run 361 stress 0.04083702
## Run 362 stress 0.04083704
## Run 363 stress 0.04023331
## ... Procrustes: rmse 3.06245e-05 max resid 4.729656e-05
## ... Similar to previous best
## Run 364 stress 0.04083702
## Run 365 stress 0.04023336
## ... Procrustes: rmse 0.0001156289 max resid 0.0001798225
## ... Similar to previous best
## Run 366 stress 0.04023338
## ... Procrustes: rmse 0.0001340658 max resid 0.0002081601
## ... Similar to previous best
## Run 367 stress 0.04083702
## Run 368 stress 0.04023337
## ... Procrustes: rmse 0.0001288178 max resid 0.0002004763
## ... Similar to previous best
## Run 369 stress 0.04083705
## Run 370 stress 0.04083704
## Run 371 stress 0.04083705
## Run 372 stress 0.04023332
## ... Procrustes: rmse 7.319285e-05 max resid 0.000113452
## ... Similar to previous best
## Run 373 stress 0.04023341
## ... Procrustes: rmse 0.0001629886 max resid 0.0002529846
## ... Similar to previous best
## Run 374 stress 0.04083706
## Run 375 stress 0.04083704
## Run 376 stress 0.04083703
## Run 377 stress 0.04083702
## Run 378 stress 0.04083703
## Run 379 stress 0.04023332
## ... Procrustes: rmse 5.483894e-05 max resid 8.483933e-05
## ... Similar to previous best
## Run 380 stress 0.04023338
## ... Procrustes: rmse 0.000126078 max resid 0.0001958915
## ... Similar to previous best
## Run 381 stress 0.04083702
## Run 382 stress 0.04023332
## ... Procrustes: rmse 7.204896e-05 max resid 0.0001120702
## ... Similar to previous best
## Run 383 stress 0.04083703
## Run 384 stress 0.04083703
## Run 385 stress 0.04023333
## ... Procrustes: rmse 8.898971e-05 max resid 0.0001382602
## ... Similar to previous best
## Run 386 stress 0.04023335
## ... Procrustes: rmse 0.0001073553 max resid 0.0001670628
## ... Similar to previous best
## Run 387 stress 0.04023336
## ... Procrustes: rmse 0.0001206584 max resid 0.0001874808
## ... Similar to previous best
## Run 388 stress 0.04023338
## ... Procrustes: rmse 0.0001480647 max resid 0.0002303736
## ... Similar to previous best
## Run 389 stress 0.04083703
## Run 390 stress 0.04083707
## Run 391 stress 0.04023332
## ... Procrustes: rmse 7.300349e-05 max resid 0.0001134578
## ... Similar to previous best
## Run 392 stress 0.04083702
## Run 393 stress 0.04083703
## Run 394 stress 0.04083702
## Run 395 stress 0.1085691
## Run 396 stress 0.04083702
## Run 397 stress 0.04083707
## Run 398 stress 0.04023333
## ... Procrustes: rmse 8.805353e-05 max resid 0.0001372785
## ... Similar to previous best
## Run 399 stress 0.04083702
## Run 400 stress 0.04023331
## ... Procrustes: rmse 4.259343e-05 max resid 6.604512e-05
## ... Similar to previous best
## Run 401 stress 0.04083704
## Run 402 stress 0.04083702
## Run 403 stress 0.04083707
## Run 404 stress 0.04023335
## ... Procrustes: rmse 0.0001038535 max resid 0.0001664276
## ... Similar to previous best
## Run 405 stress 0.04023331
## ... Procrustes: rmse 3.430865e-05 max resid 5.347181e-05
## ... Similar to previous best
## Run 406 stress 0.04083704
## Run 407 stress 0.04083705
## Run 408 stress 0.04023338
## ... Procrustes: rmse 0.0001256412 max resid 0.0001948151
## ... Similar to previous best
## Run 409 stress 0.04083702
## Run 410 stress 0.04083702
## Run 411 stress 0.04083704
## Run 412 stress 0.04023331
## ... Procrustes: rmse 4.347081e-05 max resid 6.760697e-05
## ... Similar to previous best
## Run 413 stress 0.04023332
## ... Procrustes: rmse 6.370986e-05 max resid 0.0001004342
## ... Similar to previous best
## Run 414 stress 0.04083702
## Run 415 stress 0.04083702
## Run 416 stress 0.04083707
## Run 417 stress 0.04023331
## ... Procrustes: rmse 2.881431e-05 max resid 4.409736e-05
## ... Similar to previous best
## Run 418 stress 0.04023339
## ... Procrustes: rmse 0.000152919 max resid 0.0002376325
## ... Similar to previous best
## Run 419 stress 0.04023332
## ... Procrustes: rmse 5.673653e-05 max resid 8.817527e-05
## ... Similar to previous best
## Run 420 stress 0.04023331
## ... Procrustes: rmse 4.172403e-05 max resid 6.479567e-05
## ... Similar to previous best
## Run 421 stress 0.04083702
## Run 422 stress 0.04023344
## ... Procrustes: rmse 0.0001915317 max resid 0.0002978618
## ... Similar to previous best
## Run 423 stress 0.04023334
## ... Procrustes: rmse 6.656452e-05 max resid 0.0001011837
## ... Similar to previous best
## Run 424 stress 0.04083702
## Run 425 stress 0.04023336
## ... Procrustes: rmse 0.0001051589 max resid 0.0001776785
## ... Similar to previous best
## Run 426 stress 0.04023335
## ... Procrustes: rmse 9.409878e-05 max resid 0.0001445761
## ... Similar to previous best
## Run 427 stress 0.04023334
## ... Procrustes: rmse 8.970271e-05 max resid 0.0001396259
## ... Similar to previous best
## Run 428 stress 0.04083702
## Run 429 stress 0.04023334
## ... Procrustes: rmse 0.0001057227 max resid 0.0001644729
## ... Similar to previous best
## Run 430 stress 0.04083703
## Run 431 stress 0.04023343
## ... Procrustes: rmse 0.0001857138 max resid 0.0002887779
## ... Similar to previous best
## Run 432 stress 0.04023339
## ... Procrustes: rmse 0.0001406704 max resid 0.0002176047
## ... Similar to previous best
## Run 433 stress 0.04023339
## ... Procrustes: rmse 0.0001452067 max resid 0.0002257301
## ... Similar to previous best
## Run 434 stress 0.04083704
## Run 435 stress 0.04083707
## Run 436 stress 0.04083706
## Run 437 stress 0.04083703
## Run 438 stress 0.04083703
## Run 439 stress 0.04083705
## Run 440 stress 0.04023333
## ... Procrustes: rmse 8.550161e-05 max resid 0.0001328802
## ... Similar to previous best
## Run 441 stress 0.1099573
## Run 442 stress 0.0402334
## ... Procrustes: rmse 0.0001509204 max resid 0.0002346978
## ... Similar to previous best
## Run 443 stress 0.04083702
## Run 444 stress 0.04023333
## ... Procrustes: rmse 6.997364e-05 max resid 0.0001087639
## ... Similar to previous best
## Run 445 stress 0.04023342
## ... Procrustes: rmse 0.0001686916 max resid 0.0002622201
## ... Similar to previous best
## Run 446 stress 0.04023338
## ... Procrustes: rmse 0.0001391605 max resid 0.0002164925
## ... Similar to previous best
## Run 447 stress 0.04083702
## Run 448 stress 0.04023336
## ... Procrustes: rmse 0.0001236027 max resid 0.000191775
## ... Similar to previous best
## Run 449 stress 0.04023338
## ... Procrustes: rmse 0.0001347141 max resid 0.000209312
## ... Similar to previous best
## Run 450 stress 0.04023333
## ... Procrustes: rmse 8.434297e-05 max resid 0.0001310653
## ... Similar to previous best
## Run 451 stress 0.04083704
## Run 452 stress 0.04083702
## Run 453 stress 0.04083704
## Run 454 stress 0.04023332
## ... Procrustes: rmse 4.332865e-05 max resid 6.668244e-05
## ... Similar to previous best
## Run 455 stress 0.04023337
## ... Procrustes: rmse 0.0001321517 max resid 0.0002056033
## ... Similar to previous best
## Run 456 stress 0.04023332
## ... Procrustes: rmse 6.752553e-05 max resid 0.0001068043
## ... Similar to previous best
## Run 457 stress 0.04023332
## ... Procrustes: rmse 6.00545e-05 max resid 9.331654e-05
## ... Similar to previous best
## Run 458 stress 0.04083702
## Run 459 stress 0.04023338
## ... Procrustes: rmse 0.00012418 max resid 0.0001917308
## ... Similar to previous best
## Run 460 stress 0.04023331
## ... Procrustes: rmse 4.181929e-05 max resid 6.49654e-05
## ... Similar to previous best
## Run 461 stress 0.3242663
## Run 462 stress 0.04083705
## Run 463 stress 0.04023337
## ... Procrustes: rmse 0.0001311452 max resid 0.0002037301
## ... Similar to previous best
## Run 464 stress 0.04023331
## ... Procrustes: rmse 2.166089e-05 max resid 3.369002e-05
## ... Similar to previous best
## Run 465 stress 0.04023334
## ... Procrustes: rmse 8.047606e-05 max resid 0.0001244652
## ... Similar to previous best
## Run 466 stress 0.04023342
## ... Procrustes: rmse 0.0001668652 max resid 0.0002592409
## ... Similar to previous best
## Run 467 stress 0.04083704
## Run 468 stress 0.04083702
## Run 469 stress 0.04023341
## ... Procrustes: rmse 0.0001676888 max resid 0.0002606355
## ... Similar to previous best
## Run 470 stress 0.04083704
## Run 471 stress 0.04023333
## ... Procrustes: rmse 8.901223e-05 max resid 0.0001384695
## ... Similar to previous best
## Run 472 stress 0.04083704
## Run 473 stress 0.04083704
## Run 474 stress 0.0402334
## ... Procrustes: rmse 0.0001658205 max resid 0.0002578237
## ... Similar to previous best
## Run 475 stress 0.04023331
## ... Procrustes: rmse 4.237073e-06 max resid 7.072261e-06
## ... Similar to previous best
## Run 476 stress 0.04023338
## ... Procrustes: rmse 0.0001416096 max resid 0.0002197535
## ... Similar to previous best
## Run 477 stress 0.04023334
## ... Procrustes: rmse 0.0001038344 max resid 0.0001614787
## ... Similar to previous best
## Run 478 stress 0.04083703
## Run 479 stress 0.04083702
## Run 480 stress 0.04083702
## Run 481 stress 0.04083703
## Run 482 stress 0.04083706
## Run 483 stress 0.04083706
## Run 484 stress 0.04083703
## Run 485 stress 0.04083702
## Run 486 stress 0.04083704
## Run 487 stress 0.04023332
## ... Procrustes: rmse 5.178665e-05 max resid 8.054253e-05
## ... Similar to previous best
## Run 488 stress 0.04083702
## Run 489 stress 0.04083702
## Run 490 stress 0.04023331
## ... Procrustes: rmse 4.08372e-05 max resid 6.789285e-05
## ... Similar to previous best
## Run 491 stress 0.04083703
## Run 492 stress 0.04023344
## ... Procrustes: rmse 0.0001929691 max resid 0.0002990658
## ... Similar to previous best
## Run 493 stress 0.04023331
## ... Procrustes: rmse 1.753859e-05 max resid 2.716376e-05
## ... Similar to previous best
## Run 494 stress 0.1090971
## Run 495 stress 0.04083705
## Run 496 stress 0.04083703
## Run 497 stress 0.04083704
## Run 498 stress 0.04083702
## Run 499 stress 0.04023337
## ... Procrustes: rmse 0.0001372083 max resid 0.0002135551
## ... Similar to previous best
## Run 500 stress 0.04023337
## ... Procrustes: rmse 0.0001321555 max resid 0.0002043602
## ... Similar to previous best
## *** Best solution repeated 229 times# Stratified lakes and ocean sites
fdbso_NMDS <- metaMDS(fdbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.04040732
## Run 1 stress 0.04755253
## Run 2 stress 0.05017318
## Run 3 stress 0.04781521
## Run 4 stress 0.04870928
## Run 5 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 1.088983e-05 max resid 2.283008e-05
## ... Similar to previous best
## Run 6 stress 0.2820455
## Run 7 stress 0.04040732
## ... Procrustes: rmse 1.031497e-05 max resid 2.345124e-05
## ... Similar to previous best
## Run 8 stress 0.04870928
## Run 9 stress 0.04472625
## Run 10 stress 0.04040732
## ... Procrustes: rmse 2.55143e-06 max resid 5.916101e-06
## ... Similar to previous best
## Run 11 stress 0.04755259
## Run 12 stress 0.04781521
## Run 13 stress 0.04040732
## ... Procrustes: rmse 3.645713e-06 max resid 8.788737e-06
## ... Similar to previous best
## Run 14 stress 0.0501732
## Run 15 stress 0.04755261
## Run 16 stress 0.05353508
## Run 17 stress 0.04870933
## Run 18 stress 0.05017316
## Run 19 stress 0.04755256
## Run 20 stress 0.04040732
## ... Procrustes: rmse 2.177841e-05 max resid 3.896809e-05
## ... Similar to previous best
## Run 21 stress 0.04472623
## Run 22 stress 0.04781522
## Run 23 stress 0.04662836
## Run 24 stress 0.04472623
## Run 25 stress 0.04040732
## ... Procrustes: rmse 1.614508e-05 max resid 3.954118e-05
## ... Similar to previous best
## Run 26 stress 0.05017319
## Run 27 stress 0.04040732
## ... Procrustes: rmse 7.894703e-07 max resid 1.75739e-06
## ... Similar to previous best
## Run 28 stress 0.0487093
## Run 29 stress 0.04755259
## Run 30 stress 0.04755254
## Run 31 stress 0.04040732
## ... Procrustes: rmse 6.224606e-06 max resid 1.309842e-05
## ... Similar to previous best
## Run 32 stress 0.04040732
## ... Procrustes: rmse 1.36627e-05 max resid 2.715521e-05
## ... Similar to previous best
## Run 33 stress 0.04472624
## Run 34 stress 0.04755274
## Run 35 stress 0.2807517
## Run 36 stress 0.04781521
## Run 37 stress 0.04040732
## ... Procrustes: rmse 2.674644e-05 max resid 4.728797e-05
## ... Similar to previous best
## Run 38 stress 0.04870928
## Run 39 stress 0.04472623
## Run 40 stress 0.04663048
## Run 41 stress 0.04040732
## ... Procrustes: rmse 3.525046e-06 max resid 8.363687e-06
## ... Similar to previous best
## Run 42 stress 0.04040732
## ... Procrustes: rmse 2.443418e-05 max resid 4.478116e-05
## ... Similar to previous best
## Run 43 stress 0.05017322
## Run 44 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 1.44984e-05 max resid 2.649278e-05
## ... Similar to previous best
## Run 45 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 1.087362e-05 max resid 1.862921e-05
## ... Similar to previous best
## Run 46 stress 0.04040732
## ... Procrustes: rmse 1.260048e-05 max resid 2.476243e-05
## ... Similar to previous best
## Run 47 stress 0.04040732
## ... Procrustes: rmse 9.258741e-06 max resid 2.169109e-05
## ... Similar to previous best
## Run 48 stress 0.0447148
## Run 49 stress 0.04663048
## Run 50 stress 0.04040732
## ... Procrustes: rmse 2.112754e-06 max resid 4.81237e-06
## ... Similar to previous best
## Run 51 stress 0.04040732
## ... Procrustes: rmse 4.042568e-05 max resid 7.574841e-05
## ... Similar to previous best
## Run 52 stress 0.04472623
## Run 53 stress 0.04040732
## ... Procrustes: rmse 2.070755e-05 max resid 4.537996e-05
## ... Similar to previous best
## Run 54 stress 0.05017325
## Run 55 stress 0.04662835
## Run 56 stress 0.04755263
## Run 57 stress 0.05017323
## Run 58 stress 0.04662835
## Run 59 stress 0.04781521
## Run 60 stress 0.04040732
## ... Procrustes: rmse 1.240516e-05 max resid 2.244587e-05
## ... Similar to previous best
## Run 61 stress 0.04755269
## Run 62 stress 0.0466284
## Run 63 stress 0.04781521
## Run 64 stress 0.04870928
## Run 65 stress 0.05353506
## Run 66 stress 0.05017315
## Run 67 stress 0.0475526
## Run 68 stress 0.04472624
## Run 69 stress 0.04755255
## Run 70 stress 0.04870929
## Run 71 stress 0.04040732
## ... Procrustes: rmse 1.953339e-06 max resid 3.508332e-06
## ... Similar to previous best
## Run 72 stress 0.04870929
## Run 73 stress 0.04662845
## Run 74 stress 0.04781522
## Run 75 stress 0.05017318
## Run 76 stress 0.05017321
## Run 77 stress 0.04870929
## Run 78 stress 0.04040732
## ... Procrustes: rmse 4.344436e-06 max resid 7.750213e-06
## ... Similar to previous best
## Run 79 stress 0.04040732
## ... Procrustes: rmse 1.107834e-05 max resid 2.005453e-05
## ... Similar to previous best
## Run 80 stress 0.04781522
## Run 81 stress 0.05353508
## Run 82 stress 0.04040734
## ... Procrustes: rmse 6.061055e-05 max resid 0.0001081423
## ... Similar to previous best
## Run 83 stress 0.04471762
## Run 84 stress 0.04040732
## ... Procrustes: rmse 2.383716e-05 max resid 4.241997e-05
## ... Similar to previous best
## Run 85 stress 0.04040732
## ... Procrustes: rmse 1.23375e-05 max resid 2.236997e-05
## ... Similar to previous best
## Run 86 stress 0.3578479
## Run 87 stress 0.04870931
## Run 88 stress 0.0487093
## Run 89 stress 0.04040732
## ... Procrustes: rmse 1.043111e-05 max resid 2.475901e-05
## ... Similar to previous best
## Run 90 stress 0.04781523
## Run 91 stress 0.04870937
## Run 92 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 2.235728e-06 max resid 3.951066e-06
## ... Similar to previous best
## Run 93 stress 0.04040732
## ... Procrustes: rmse 5.893247e-06 max resid 1.146903e-05
## ... Similar to previous best
## Run 94 stress 0.04870928
## Run 95 stress 0.04040732
## ... Procrustes: rmse 2.376478e-05 max resid 4.226525e-05
## ... Similar to previous best
## Run 96 stress 0.05017317
## Run 97 stress 0.04870931
## Run 98 stress 0.04870928
## Run 99 stress 0.04870932
## Run 100 stress 0.05017316
## Run 101 stress 0.04870931
## Run 102 stress 0.04870928
## Run 103 stress 0.04755258
## Run 104 stress 0.04040732
## ... Procrustes: rmse 7.827449e-06 max resid 1.418492e-05
## ... Similar to previous best
## Run 105 stress 0.04662835
## Run 106 stress 0.0501732
## Run 107 stress 0.04755271
## Run 108 stress 0.04472625
## Run 109 stress 0.04472623
## Run 110 stress 0.04870928
## Run 111 stress 0.04662836
## Run 112 stress 0.04471762
## Run 113 stress 0.04040732
## ... Procrustes: rmse 3.557153e-05 max resid 6.332051e-05
## ... Similar to previous best
## Run 114 stress 0.04472623
## Run 115 stress 0.05017317
## Run 116 stress 0.04040732
## ... Procrustes: rmse 1.052513e-05 max resid 1.873799e-05
## ... Similar to previous best
## Run 117 stress 0.04040732
## ... Procrustes: rmse 9.31983e-06 max resid 1.923789e-05
## ... Similar to previous best
## Run 118 stress 0.04040732
## ... Procrustes: rmse 5.817326e-06 max resid 9.953807e-06
## ... Similar to previous best
## Run 119 stress 0.04040732
## ... Procrustes: rmse 1.248856e-06 max resid 2.23962e-06
## ... Similar to previous best
## Run 120 stress 0.04870928
## Run 121 stress 0.0501732
## Run 122 stress 0.04040732
## ... Procrustes: rmse 1.590823e-05 max resid 3.125455e-05
## ... Similar to previous best
## Run 123 stress 0.04663049
## Run 124 stress 0.04755265
## Run 125 stress 0.04040732
## ... Procrustes: rmse 1.836968e-05 max resid 3.262925e-05
## ... Similar to previous best
## Run 126 stress 0.04870928
## Run 127 stress 0.04040732
## ... Procrustes: rmse 6.792302e-06 max resid 1.221418e-05
## ... Similar to previous best
## Run 128 stress 0.04040732
## ... Procrustes: rmse 5.973602e-06 max resid 1.135787e-05
## ... Similar to previous best
## Run 129 stress 0.04781524
## Run 130 stress 0.04870935
## Run 131 stress 0.04781521
## Run 132 stress 0.04870933
## Run 133 stress 0.04755254
## Run 134 stress 0.04472624
## Run 135 stress 0.05017317
## Run 136 stress 0.04870932
## Run 137 stress 0.04755272
## Run 138 stress 0.04040732
## ... Procrustes: rmse 1.306878e-05 max resid 2.337548e-05
## ... Similar to previous best
## Run 139 stress 0.05017315
## Run 140 stress 0.04870928
## Run 141 stress 0.05017316
## Run 142 stress 0.04040732
## ... Procrustes: rmse 9.056244e-06 max resid 1.593364e-05
## ... Similar to previous best
## Run 143 stress 0.04040732
## ... Procrustes: rmse 8.426099e-06 max resid 2.432372e-05
## ... Similar to previous best
## Run 144 stress 0.04040732
## ... Procrustes: rmse 8.173936e-06 max resid 1.528983e-05
## ... Similar to previous best
## Run 145 stress 0.04040732
## ... Procrustes: rmse 1.592232e-05 max resid 3.876116e-05
## ... Similar to previous best
## Run 146 stress 0.04781522
## Run 147 stress 0.04471481
## Run 148 stress 0.04040732
## ... Procrustes: rmse 4.642217e-06 max resid 9.02731e-06
## ... Similar to previous best
## Run 149 stress 0.04472624
## Run 150 stress 0.04781522
## Run 151 stress 0.04040732
## ... Procrustes: rmse 1.525454e-05 max resid 2.908793e-05
## ... Similar to previous best
## Run 152 stress 0.05017324
## Run 153 stress 0.04781521
## Run 154 stress 0.04040732
## ... Procrustes: rmse 3.376733e-06 max resid 8.22493e-06
## ... Similar to previous best
## Run 155 stress 0.04040733
## ... Procrustes: rmse 3.988488e-05 max resid 7.101463e-05
## ... Similar to previous best
## Run 156 stress 0.04755256
## Run 157 stress 0.04040732
## ... Procrustes: rmse 8.065554e-06 max resid 1.47936e-05
## ... Similar to previous best
## Run 158 stress 0.05353511
## Run 159 stress 0.04781521
## Run 160 stress 0.04781521
## Run 161 stress 0.04662845
## Run 162 stress 0.282148
## Run 163 stress 0.04870928
## Run 164 stress 0.04040732
## ... Procrustes: rmse 5.103203e-06 max resid 1.299281e-05
## ... Similar to previous best
## Run 165 stress 0.04040732
## ... Procrustes: rmse 8.81321e-06 max resid 1.607024e-05
## ... Similar to previous best
## Run 166 stress 0.04662838
## Run 167 stress 0.04040732
## ... Procrustes: rmse 7.59075e-06 max resid 1.684016e-05
## ... Similar to previous best
## Run 168 stress 0.04755264
## Run 169 stress 0.04040732
## ... Procrustes: rmse 1.202679e-05 max resid 2.343663e-05
## ... Similar to previous best
## Run 170 stress 0.04040732
## ... Procrustes: rmse 2.244235e-06 max resid 3.780833e-06
## ... Similar to previous best
## Run 171 stress 0.04040732
## ... Procrustes: rmse 6.582934e-06 max resid 1.127496e-05
## ... Similar to previous best
## Run 172 stress 0.04781521
## Run 173 stress 0.04870928
## Run 174 stress 0.04040732
## ... Procrustes: rmse 3.257417e-06 max resid 7.780744e-06
## ... Similar to previous best
## Run 175 stress 0.04781522
## Run 176 stress 0.04870934
## Run 177 stress 0.05017318
## Run 178 stress 0.04755261
## Run 179 stress 0.0487093
## Run 180 stress 0.04870933
## Run 181 stress 0.04781522
## Run 182 stress 0.04781522
## Run 183 stress 0.04040732
## ... Procrustes: rmse 4.602023e-06 max resid 7.86391e-06
## ... Similar to previous best
## Run 184 stress 0.04040732
## ... Procrustes: rmse 4.063381e-06 max resid 9.772062e-06
## ... Similar to previous best
## Run 185 stress 0.2722709
## Run 186 stress 0.04471481
## Run 187 stress 0.04040732
## ... Procrustes: rmse 2.373502e-06 max resid 4.18708e-06
## ... Similar to previous best
## Run 188 stress 0.04040732
## ... Procrustes: rmse 9.046214e-06 max resid 1.629947e-05
## ... Similar to previous best
## Run 189 stress 0.0466305
## Run 190 stress 0.0487093
## Run 191 stress 0.04755263
## Run 192 stress 0.04870928
## Run 193 stress 0.04781521
## Run 194 stress 0.05017315
## Run 195 stress 0.04040732
## ... Procrustes: rmse 9.526889e-06 max resid 2.19479e-05
## ... Similar to previous best
## Run 196 stress 0.04663048
## Run 197 stress 0.04662836
## Run 198 stress 0.04040732
## ... Procrustes: rmse 1.344131e-05 max resid 2.632365e-05
## ... Similar to previous best
## Run 199 stress 0.05017317
## Run 200 stress 0.04870928
## Run 201 stress 0.04662837
## Run 202 stress 0.04755253
## Run 203 stress 0.05017319
## Run 204 stress 0.04870933
## Run 205 stress 0.04663055
## Run 206 stress 0.04870931
## Run 207 stress 0.04662842
## Run 208 stress 0.04040732
## ... Procrustes: rmse 8.945751e-07 max resid 1.594931e-06
## ... Similar to previous best
## Run 209 stress 0.0487093
## Run 210 stress 0.3222046
## Run 211 stress 0.04870932
## Run 212 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 1.269407e-06 max resid 2.312762e-06
## ... Similar to previous best
## Run 213 stress 0.04040732
## ... Procrustes: rmse 7.368491e-07 max resid 1.928076e-06
## ... Similar to previous best
## Run 214 stress 0.04871641
## Run 215 stress 0.04472625
## Run 216 stress 0.04040732
## ... Procrustes: rmse 4.515405e-06 max resid 7.373182e-06
## ... Similar to previous best
## Run 217 stress 0.04472623
## Run 218 stress 0.04755259
## Run 219 stress 0.0475526
## Run 220 stress 0.04781521
## Run 221 stress 0.04040732
## ... Procrustes: rmse 7.046906e-06 max resid 1.301393e-05
## ... Similar to previous best
## Run 222 stress 0.04040732
## ... Procrustes: rmse 3.441567e-06 max resid 6.976505e-06
## ... Similar to previous best
## Run 223 stress 0.04040732
## ... Procrustes: rmse 1.776425e-05 max resid 3.17886e-05
## ... Similar to previous best
## Run 224 stress 0.0447148
## Run 225 stress 0.05017323
## Run 226 stress 0.04781521
## Run 227 stress 0.04472626
## Run 228 stress 0.04870929
## Run 229 stress 0.04870929
## Run 230 stress 0.04781521
## Run 231 stress 0.04755264
## Run 232 stress 0.04040732
## ... Procrustes: rmse 6.398942e-06 max resid 1.292648e-05
## ... Similar to previous best
## Run 233 stress 0.04781521
## Run 234 stress 0.05353519
## Run 235 stress 0.04040732
## ... Procrustes: rmse 2.569437e-05 max resid 4.599659e-05
## ... Similar to previous best
## Run 236 stress 0.04040732
## ... Procrustes: rmse 5.778454e-06 max resid 1.079432e-05
## ... Similar to previous best
## Run 237 stress 0.04472623
## Run 238 stress 0.04781521
## Run 239 stress 0.04781521
## Run 240 stress 0.04471762
## Run 241 stress 0.04040732
## ... Procrustes: rmse 5.727317e-06 max resid 1.161276e-05
## ... Similar to previous best
## Run 242 stress 0.04040732
## ... Procrustes: rmse 1.023957e-05 max resid 1.866841e-05
## ... Similar to previous best
## Run 243 stress 0.05353505
## Run 244 stress 0.04781521
## Run 245 stress 0.05017316
## Run 246 stress 0.04781521
## Run 247 stress 0.04662835
## Run 248 stress 0.04040734
## ... Procrustes: rmse 4.776227e-05 max resid 8.860693e-05
## ... Similar to previous best
## Run 249 stress 0.04781522
## Run 250 stress 0.04781522
## Run 251 stress 0.04472625
## Run 252 stress 0.04870928
## Run 253 stress 0.04781522
## Run 254 stress 0.04870931
## Run 255 stress 0.04870929
## Run 256 stress 0.04781521
## Run 257 stress 0.04781522
## Run 258 stress 0.04781521
## Run 259 stress 0.04755266
## Run 260 stress 0.04472624
## Run 261 stress 0.04040732
## ... Procrustes: rmse 9.040129e-06 max resid 1.411002e-05
## ... Similar to previous best
## Run 262 stress 0.04755261
## Run 263 stress 0.04040732
## ... New best solution
## ... Procrustes: rmse 7.671256e-07 max resid 1.465394e-06
## ... Similar to previous best
## Run 264 stress 0.04472625
## Run 265 stress 0.04870931
## Run 266 stress 0.04040732
## ... Procrustes: rmse 2.613782e-05 max resid 4.739461e-05
## ... Similar to previous best
## Run 267 stress 0.04472623
## Run 268 stress 0.04755257
## Run 269 stress 0.04472623
## Run 270 stress 0.04755267
## Run 271 stress 0.04781522
## Run 272 stress 0.04040732
## ... Procrustes: rmse 7.25074e-06 max resid 1.382919e-05
## ... Similar to previous best
## Run 273 stress 0.04040732
## ... Procrustes: rmse 1.06318e-05 max resid 2.074943e-05
## ... Similar to previous best
## Run 274 stress 0.04662836
## Run 275 stress 0.04781521
## Run 276 stress 0.05017319
## Run 277 stress 0.04781521
## Run 278 stress 0.04040732
## ... Procrustes: rmse 3.786003e-06 max resid 9.512903e-06
## ... Similar to previous best
## Run 279 stress 0.05017319
## Run 280 stress 0.04040732
## ... Procrustes: rmse 2.441144e-06 max resid 4.680839e-06
## ... Similar to previous best
## Run 281 stress 0.04781521
## Run 282 stress 0.04662835
## Run 283 stress 0.0487093
## Run 284 stress 0.05017316
## Run 285 stress 0.04781521
## Run 286 stress 0.05017316
## Run 287 stress 0.04040732
## ... Procrustes: rmse 1.015188e-05 max resid 1.892784e-05
## ... Similar to previous best
## Run 288 stress 0.04040732
## ... Procrustes: rmse 1.707277e-06 max resid 3.28986e-06
## ... Similar to previous best
## Run 289 stress 0.04781521
## Run 290 stress 0.04755255
## Run 291 stress 0.04662836
## Run 292 stress 0.04870929
## Run 293 stress 0.04870928
## Run 294 stress 0.05017318
## Run 295 stress 0.04472623
## Run 296 stress 0.04040732
## ... Procrustes: rmse 8.75933e-06 max resid 1.759246e-05
## ... Similar to previous best
## Run 297 stress 0.04870928
## Run 298 stress 0.04870928
## Run 299 stress 0.04871639
## Run 300 stress 0.04040732
## ... Procrustes: rmse 3.240172e-05 max resid 5.790631e-05
## ... Similar to previous best
## Run 301 stress 0.04755261
## Run 302 stress 0.04040732
## ... Procrustes: rmse 4.510316e-06 max resid 8.234332e-06
## ... Similar to previous best
## Run 303 stress 0.04040732
## ... Procrustes: rmse 2.129253e-05 max resid 4.0849e-05
## ... Similar to previous best
## Run 304 stress 0.0475526
## Run 305 stress 0.04755264
## Run 306 stress 0.04662835
## Run 307 stress 0.04040732
## ... Procrustes: rmse 6.137192e-06 max resid 1.187941e-05
## ... Similar to previous best
## Run 308 stress 0.04040732
## ... Procrustes: rmse 8.919267e-06 max resid 1.590136e-05
## ... Similar to previous best
## Run 309 stress 0.04040732
## ... Procrustes: rmse 9.105311e-07 max resid 1.48756e-06
## ... Similar to previous best
## Run 310 stress 0.04040734
## ... Procrustes: rmse 6.04812e-05 max resid 0.0001096157
## ... Similar to previous best
## Run 311 stress 0.04040732
## ... Procrustes: rmse 2.401576e-05 max resid 4.369426e-05
## ... Similar to previous best
## Run 312 stress 0.04040732
## ... Procrustes: rmse 1.269569e-06 max resid 2.844245e-06
## ... Similar to previous best
## Run 313 stress 0.04472624
## Run 314 stress 0.04781521
## Run 315 stress 0.04662838
## Run 316 stress 0.05017316
## Run 317 stress 0.04662839
## Run 318 stress 0.04870932
## Run 319 stress 0.04040732
## ... Procrustes: rmse 2.326737e-05 max resid 4.256643e-05
## ... Similar to previous best
## Run 320 stress 0.04040732
## ... Procrustes: rmse 4.070209e-06 max resid 7.523466e-06
## ... Similar to previous best
## Run 321 stress 0.3578483
## Run 322 stress 0.04040732
## ... Procrustes: rmse 6.904903e-06 max resid 1.35781e-05
## ... Similar to previous best
## Run 323 stress 0.0487093
## Run 324 stress 0.04040732
## ... Procrustes: rmse 8.441953e-06 max resid 1.545418e-05
## ... Similar to previous best
## Run 325 stress 0.05353513
## Run 326 stress 0.04472623
## Run 327 stress 0.04870929
## Run 328 stress 0.04040732
## ... Procrustes: rmse 1.069204e-05 max resid 1.899232e-05
## ... Similar to previous best
## Run 329 stress 0.04755266
## Run 330 stress 0.04781521
## Run 331 stress 0.04663052
## Run 332 stress 0.05353516
## Run 333 stress 0.04755256
## Run 334 stress 0.04040732
## ... Procrustes: rmse 1.836468e-05 max resid 3.347878e-05
## ... Similar to previous best
## Run 335 stress 0.0447148
## Run 336 stress 0.04755273
## Run 337 stress 0.04870929
## Run 338 stress 0.04040735
## ... Procrustes: rmse 1.746365e-05 max resid 4.752926e-05
## ... Similar to previous best
## Run 339 stress 0.04040732
## ... Procrustes: rmse 8.943639e-06 max resid 1.873625e-05
## ... Similar to previous best
## Run 340 stress 0.04755256
## Run 341 stress 0.04662836
## Run 342 stress 0.04040732
## ... Procrustes: rmse 2.428207e-06 max resid 4.428864e-06
## ... Similar to previous best
## Run 343 stress 0.04040732
## ... Procrustes: rmse 5.73566e-06 max resid 1.569956e-05
## ... Similar to previous best
## Run 344 stress 0.0466284
## Run 345 stress 0.04040732
## ... Procrustes: rmse 1.781502e-05 max resid 3.164665e-05
## ... Similar to previous best
## Run 346 stress 0.0447148
## Run 347 stress 0.04755265
## Run 348 stress 0.05353512
## Run 349 stress 0.04755265
## Run 350 stress 0.04663048
## Run 351 stress 0.04781521
## Run 352 stress 0.04781521
## Run 353 stress 0.04755269
## Run 354 stress 0.04040732
## ... Procrustes: rmse 8.399409e-06 max resid 1.597786e-05
## ... Similar to previous best
## Run 355 stress 0.2824287
## Run 356 stress 0.04040732
## ... Procrustes: rmse 6.715621e-06 max resid 1.248778e-05
## ... Similar to previous best
## Run 357 stress 0.04870928
## Run 358 stress 0.04040732
## ... Procrustes: rmse 1.261239e-05 max resid 2.566231e-05
## ... Similar to previous best
## Run 359 stress 0.04781521
## Run 360 stress 0.04870928
## Run 361 stress 0.04040732
## ... Procrustes: rmse 7.822977e-06 max resid 1.550549e-05
## ... Similar to previous best
## Run 362 stress 0.05017317
## Run 363 stress 0.05017315
## Run 364 stress 0.04472623
## Run 365 stress 0.04040732
## ... Procrustes: rmse 3.516769e-06 max resid 6.230463e-06
## ... Similar to previous best
## Run 366 stress 0.04040732
## ... Procrustes: rmse 1.052036e-05 max resid 1.87522e-05
## ... Similar to previous best
## Run 367 stress 0.04755263
## Run 368 stress 0.05017315
## Run 369 stress 0.04755258
## Run 370 stress 0.04870928
## Run 371 stress 0.04781521
## Run 372 stress 0.04781521
## Run 373 stress 0.3091224
## Run 374 stress 0.3578481
## Run 375 stress 0.04755265
## Run 376 stress 0.04040732
## ... Procrustes: rmse 3.019106e-05 max resid 5.365961e-05
## ... Similar to previous best
## Run 377 stress 0.04781521
## Run 378 stress 0.04040732
## ... Procrustes: rmse 4.8832e-06 max resid 1.116504e-05
## ... Similar to previous best
## Run 379 stress 0.04472624
## Run 380 stress 0.04870931
## Run 381 stress 0.04040732
## ... Procrustes: rmse 3.91205e-06 max resid 9.724976e-06
## ... Similar to previous best
## Run 382 stress 0.3146611
## Run 383 stress 0.05017316
## Run 384 stress 0.05017315
## Run 385 stress 0.04781521
## Run 386 stress 0.04870929
## Run 387 stress 0.04755264
## Run 388 stress 0.04870928
## Run 389 stress 0.04040732
## ... Procrustes: rmse 1.083275e-05 max resid 1.918874e-05
## ... Similar to previous best
## Run 390 stress 0.04040732
## ... Procrustes: rmse 5.038216e-06 max resid 9.988332e-06
## ... Similar to previous best
## Run 391 stress 0.04781522
## Run 392 stress 0.04040732
## ... Procrustes: rmse 4.154329e-06 max resid 8.650324e-06
## ... Similar to previous best
## Run 393 stress 0.04040732
## ... Procrustes: rmse 3.743669e-06 max resid 6.883565e-06
## ... Similar to previous best
## Run 394 stress 0.04472623
## Run 395 stress 0.05017316
## Run 396 stress 0.04781521
## Run 397 stress 0.05017317
## Run 398 stress 0.04472623
## Run 399 stress 0.04040732
## ... Procrustes: rmse 1.009554e-05 max resid 1.950086e-05
## ... Similar to previous best
## Run 400 stress 0.04870932
## Run 401 stress 0.04040732
## ... Procrustes: rmse 8.70774e-06 max resid 1.548531e-05
## ... Similar to previous best
## Run 402 stress 0.05017316
## Run 403 stress 0.04781523
## Run 404 stress 0.04781521
## Run 405 stress 0.05017318
## Run 406 stress 0.04662842
## Run 407 stress 0.04755267
## Run 408 stress 0.04040732
## ... Procrustes: rmse 1.639239e-06 max resid 2.887799e-06
## ... Similar to previous best
## Run 409 stress 0.05353506
## Run 410 stress 0.04040732
## ... Procrustes: rmse 2.398058e-05 max resid 4.236059e-05
## ... Similar to previous best
## Run 411 stress 0.0487093
## Run 412 stress 0.3261717
## Run 413 stress 0.04040733
## ... Procrustes: rmse 4.6608e-05 max resid 8.353995e-05
## ... Similar to previous best
## Run 414 stress 0.05017318
## Run 415 stress 0.0475526
## Run 416 stress 0.04755266
## Run 417 stress 0.04040732
## ... Procrustes: rmse 3.586082e-05 max resid 6.381139e-05
## ... Similar to previous best
## Run 418 stress 0.04870931
## Run 419 stress 0.0487094
## Run 420 stress 0.04472625
## Run 421 stress 0.0501732
## Run 422 stress 0.04870929
## Run 423 stress 0.0501732
## Run 424 stress 0.04040732
## ... Procrustes: rmse 1.075496e-05 max resid 2.644393e-05
## ... Similar to previous best
## Run 425 stress 0.04755262
## Run 426 stress 0.04755264
## Run 427 stress 0.0501732
## Run 428 stress 0.04870929
## Run 429 stress 0.05017316
## Run 430 stress 0.0447148
## Run 431 stress 0.04755261
## Run 432 stress 0.04040734
## ... Procrustes: rmse 6.07145e-05 max resid 0.0001089693
## ... Similar to previous best
## Run 433 stress 0.04040732
## ... Procrustes: rmse 1.735403e-05 max resid 3.096028e-05
## ... Similar to previous best
## Run 434 stress 0.04472623
## Run 435 stress 0.05017319
## Run 436 stress 0.04781521
## Run 437 stress 0.05353506
## Run 438 stress 0.04755267
## Run 439 stress 0.04471762
## Run 440 stress 0.05017316
## Run 441 stress 0.04755254
## Run 442 stress 0.0487164
## Run 443 stress 0.04472625
## Run 444 stress 0.05017316
## Run 445 stress 0.04040732
## ... Procrustes: rmse 1.634014e-05 max resid 4.109631e-05
## ... Similar to previous best
## Run 446 stress 0.04781521
## Run 447 stress 0.0475526
## Run 448 stress 0.04040732
## ... Procrustes: rmse 2.991461e-06 max resid 5.73969e-06
## ... Similar to previous best
## Run 449 stress 0.04662835
## Run 450 stress 0.04040733
## ... Procrustes: rmse 3.850214e-05 max resid 6.942879e-05
## ... Similar to previous best
## Run 451 stress 0.2680344
## Run 452 stress 0.05017318
## Run 453 stress 0.04471762
## Run 454 stress 0.04472623
## Run 455 stress 0.04040732
## ... Procrustes: rmse 2.037657e-05 max resid 3.621765e-05
## ... Similar to previous best
## Run 456 stress 0.04870929
## Run 457 stress 0.04040733
## ... Procrustes: rmse 5.070654e-05 max resid 9.048026e-05
## ... Similar to previous best
## Run 458 stress 0.04755262
## Run 459 stress 0.04040732
## ... Procrustes: rmse 8.373064e-06 max resid 1.503186e-05
## ... Similar to previous best
## Run 460 stress 0.04040732
## ... Procrustes: rmse 5.100947e-06 max resid 9.842386e-06
## ... Similar to previous best
## Run 461 stress 0.04472623
## Run 462 stress 0.05017318
## Run 463 stress 0.04040732
## ... Procrustes: rmse 4.379748e-06 max resid 9.089147e-06
## ... Similar to previous best
## Run 464 stress 0.04662841
## Run 465 stress 0.05017315
## Run 466 stress 0.04662835
## Run 467 stress 0.0487093
## Run 468 stress 0.04663049
## Run 469 stress 0.04040732
## ... Procrustes: rmse 7.704242e-06 max resid 1.463774e-05
## ... Similar to previous best
## Run 470 stress 0.04870935
## Run 471 stress 0.04662837
## Run 472 stress 0.05017316
## Run 473 stress 0.0447148
## Run 474 stress 0.04040732
## ... Procrustes: rmse 5.525339e-06 max resid 1.32338e-05
## ... Similar to previous best
## Run 475 stress 0.04472626
## Run 476 stress 0.04781523
## Run 477 stress 0.04040733
## ... Procrustes: rmse 4.324387e-05 max resid 7.846827e-05
## ... Similar to previous best
## Run 478 stress 0.04040734
## ... Procrustes: rmse 6.190823e-05 max resid 0.0001121232
## ... Similar to previous best
## Run 479 stress 0.04040732
## ... Procrustes: rmse 4.839375e-06 max resid 1.266306e-05
## ... Similar to previous best
## Run 480 stress 0.0487093
## Run 481 stress 0.04472623
## Run 482 stress 0.04040732
## ... Procrustes: rmse 2.991275e-05 max resid 5.44521e-05
## ... Similar to previous best
## Run 483 stress 0.04040732
## ... Procrustes: rmse 1.184292e-05 max resid 2.551262e-05
## ... Similar to previous best
## Run 484 stress 0.04781521
## Run 485 stress 0.04662838
## Run 486 stress 0.04040732
## ... Procrustes: rmse 8.208435e-06 max resid 1.665759e-05
## ... Similar to previous best
## Run 487 stress 0.04781521
## Run 488 stress 0.04040732
## ... Procrustes: rmse 6.555953e-06 max resid 1.360338e-05
## ... Similar to previous best
## Run 489 stress 0.04870928
## Run 490 stress 0.04781521
## Run 491 stress 0.04040732
## ... Procrustes: rmse 4.503156e-06 max resid 8.289343e-06
## ... Similar to previous best
## Run 492 stress 0.04781521
## Run 493 stress 0.04755254
## Run 494 stress 0.04870928
## Run 495 stress 0.04755261
## Run 496 stress 0.04472623
## Run 497 stress 0.04040732
## ... Procrustes: rmse 6.598553e-06 max resid 1.233376e-05
## ... Similar to previous best
## Run 498 stress 0.04781521
## Run 499 stress 0.05017326
## Run 500 stress 0.04870928
## *** Best solution repeated 70 timesDetermine stratification homogeneity using traits
We use betadisper to determine homogeneity of the trait data based on the stratification category. Is the dispersion of traits similar between the different stratifications.
### Stratification
stratification_fd_bd <- betadisper(fd_dist, stratification_group)## Warning in betadisper(fd_dist, stratification_group): some squared distances
## are negative and changed to zeroanova(stratification_fd_bd)## Analysis of Variance Table
##
## Response: Distances
## Df Sum Sq Mean Sq F value Pr(>F)
## Groups 2 0.39642 0.198210 30.89 1.069e-06 ***
## Residuals 19 0.12192 0.006417
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1permutest(stratification_fd_bd, pairwise = TRUE)##
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
##
## Response: Distances
## Df Sum Sq Mean Sq F N.Perm Pr(>F)
## Groups 2 0.39642 0.198210 30.89 999 0.001 ***
## Residuals 19 0.12192 0.006417
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
## Mixed Ocean Stratified
## Mixed 3.8000e-02 0.001
## Ocean 4.0346e-02 0.003
## Stratified 6.7195e-06 6.5666e-04(stratification_fd_bd.HSD <- TukeyHSD(stratification_fd_bd))## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## Ocean-Mixed 0.05204806 -0.05785458 0.1619507 0.4657824
## Stratified-Mixed 0.29806649 0.19631641 0.3998166 0.0000014
## Stratified-Ocean 0.24601843 0.13611579 0.3559211 0.0000501boxplot(stratification_fd_bd)
Determine stratification dissimilarity using traits
We use adonis to determine if dissimilarities of species traits by stratification categories are significant and how much of the variation is explained by trait dissimilarities.
### Stratification
# All sites
fd_pms <- adonis2(fd_dist ~ env[-20,19], permutations = 999)
fd_pms## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
##
## adonis2(formula = fd_dist ~ env[-20, 19], permutations = 999)
## Df SumOfSqs R2 F Pr(>F)
## env[-20, 19] 2 1.2750 0.55876 12.03 0.001 ***
## Residual 19 1.0068 0.44124
## Total 21 2.2818 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# By stratifcation
fd_pms_pair <- pairwise.adonis(fd_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
fd_pms_pair## pairs Df SumsOfSqs F.Model R2 p.value p.adjusted sig
## 1 Stratified vs Mixed 1 0.91580033 13.423218 0.4894837 0.001 0.003 *
## 2 Stratified vs Ocean 1 0.93071542 11.199063 0.4827377 0.003 0.009 *
## 3 Mixed vs Ocean 1 0.02619034 5.132228 0.2995657 0.008 0.024 .Envfit environmental influence on traits
We use envfit to determine significantly correlated environmental variables to our trait NMDS. We will use these results, if significant, in our figure.
### Environmental
# All sites for figure
fde_ef <- envfit(fde_NMDS, env[-c(9,16,18,20),c(34)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
fde_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.998300 -0.058307 0.838 0.01898 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fde_efp <- p.adjust.envfit(fde_ef)## Adjustment of significance by bonferroni methodfde_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.998300 -0.058307 0.838 0.01898 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
fdea_ef <- envfit(fde_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
fdea_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.36835 -0.92969 0.0324 0.87512
## salinity_median 0.99830 -0.05831 0.8380 0.02997 *
## oxygen_median 0.85529 -0.51815 0.1609 0.97902
## pH_median 0.63014 -0.77648 0.6622 0.02198 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdea_efp <- p.adjust.envfit(fdea_ef)## Adjustment of significance by bonferroni methodfdea_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.36835 -0.92969 0.0324 1.00000
## salinity_median 0.99830 -0.05831 0.8380 0.11988
## oxygen_median 0.85529 -0.51815 0.1609 1.00000
## pH_median 0.63014 -0.77648 0.6622 0.08791 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
fdems_ef <- envfit(fdems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(6)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
fdems_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.99444 0.10528 0.8207 0.03996 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdems_efp <- p.adjust.envfit(fdems_ef)## Adjustment of significance by bonferroni methodfdems_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.99444 0.10528 0.8207 0.03996 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
fdeom_ef <- envfit(fdeom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(2,6,8,10)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
fdeom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median 0.28445 -0.95869 0.0400 0.78621
## salinity_median 0.99869 -0.05117 0.5614 0.07592 .
## oxygen_median 0.98315 -0.18282 0.5159 0.24176
## pH_median 0.99360 -0.11295 0.3615 0.10889
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdeom_efp <- p.adjust.envfit(fdeom_ef)## Adjustment of significance by bonferroni methodfdeom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median 0.28445 -0.95869 0.0400 1.0000
## salinity_median 0.99869 -0.05117 0.5614 0.3037
## oxygen_median 0.98315 -0.18282 0.5159 0.9670
## pH_median 0.99360 -0.11295 0.3615 0.4356
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
fdeso_ef <- envfit(fdeso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(6)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
fdeso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.90449 -0.42649 0.8323 0.01598 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdeso_efp <- p.adjust.envfit(fdeso_ef)## Adjustment of significance by bonferroni methodfdeso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.90449 -0.42649 0.8323 0.01598 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes
fds_ef <- envfit(fds_NMDS, env[c(1:2,4,5,12,17,21:22),c(28)], permutations = 1000, na.rm = TRUE)
fds_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.35483 -0.93493 0.8808 0.003996 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 1000fds_efp <- p.adjust.envfit(fds_ef)## Adjustment of significance by bonferroni methodfds_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.35483 -0.93493 0.8808 0.003996 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 1000### Biogeographic
# All sites for figure
fdb_ef <- envfit(fdb_NMDS, env[-c(8,20),c(39,40)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
fdb_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## A 0.79069 -0.61221 0.2147 0.08292 .
## minD -0.99118 0.13252 0.7123 0.14286
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdb_efp <- p.adjust.envfit(fdb_ef)## Adjustment of significance by bonferroni methodfdb_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## A 0.79069 -0.61221 0.2147 0.1658
## minD -0.99118 0.13252 0.7123 0.2857
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
fdba_ef <- envfit(fdb_NMDS, env[-c(8,20),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
fdba_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94404 -0.32984 0.1475 0.14785
## volume_m3 0.92115 -0.38922 0.1368 0.15385
## surface_area_m2 0.79069 -0.61221 0.2147 0.06194 .
## distance_to_ocean_min_m -0.99118 0.13252 0.7123 0.13986
## distance_to_ocean_mean_m -0.91482 0.40386 0.6426 0.43057
## distance_to_ocean_median_m -0.91389 0.40596 0.6420 0.40859
## tidal_lag_time_minutes -0.81089 0.58520 0.5946 0.77922
## tidal_efficiency 0.74628 -0.66563 0.6686 0.19580
## perimeter_fromSat 0.80695 -0.59061 0.2054 0.09990 .
## max_depth -0.95630 0.29238 0.0859 0.94106
## logArea 0.58897 -0.80815 0.1041 0.23676
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdba_efp <- p.adjust.envfit(fdba_ef)## Adjustment of significance by bonferroni methodfdba_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.94404 -0.32984 0.1475 1.0000
## volume_m3 0.92115 -0.38922 0.1368 1.0000
## surface_area_m2 0.79069 -0.61221 0.2147 0.6813
## distance_to_ocean_min_m -0.99118 0.13252 0.7123 1.0000
## distance_to_ocean_mean_m -0.91482 0.40386 0.6426 1.0000
## distance_to_ocean_median_m -0.91389 0.40596 0.6420 1.0000
## tidal_lag_time_minutes -0.81089 0.58520 0.5946 1.0000
## tidal_efficiency 0.74628 -0.66563 0.6686 1.0000
## perimeter_fromSat 0.80695 -0.59061 0.2054 1.0000
## max_depth -0.95630 0.29238 0.0859 1.0000
## logArea 0.58897 -0.80815 0.1041 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
fdbms_ef <- envfit(fdbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
fdbms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.00335 -0.99999 0.1023 0.6563
## volume_m3 -0.23405 -0.97223 0.2640 0.4535
## surface_area_m2 -0.30354 -0.95282 0.2595 0.4176
## distance_to_ocean_min_m -0.80428 -0.59426 0.4986 0.1678
## distance_to_ocean_mean_m -0.51381 -0.85790 0.4820 0.2178
## distance_to_ocean_median_m -0.52684 -0.84996 0.5015 0.1918
## tidal_lag_time_minutes -0.66989 -0.74246 0.1822 0.8801
## tidal_efficiency 0.89054 0.45491 0.2443 0.5305
## perimeter_fromSat -0.47885 -0.87789 0.1380 0.4635
## max_depth -0.31858 -0.94790 0.1382 0.6603
## logArea -0.28522 -0.95846 0.1268 0.4905
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdbms_efp <- p.adjust.envfit(fdbms_ef)## Adjustment of significance by bonferroni methodfdbms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.00335 -0.99999 0.1023 1
## volume_m3 -0.23405 -0.97223 0.2640 1
## surface_area_m2 -0.30354 -0.95282 0.2595 1
## distance_to_ocean_min_m -0.80428 -0.59426 0.4986 1
## distance_to_ocean_mean_m -0.51381 -0.85790 0.4820 1
## distance_to_ocean_median_m -0.52684 -0.84996 0.5015 1
## tidal_lag_time_minutes -0.66989 -0.74246 0.1822 1
## tidal_efficiency 0.89054 0.45491 0.2443 1
## perimeter_fromSat -0.47885 -0.87789 0.1380 1
## max_depth -0.31858 -0.94790 0.1382 1
## logArea -0.28522 -0.95846 0.1268 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
fdbom_ef <- envfit(fdbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
fdbom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.13170 -0.99129 0.2733 0.3666
## volume_m3 0.13131 -0.99134 0.2728 0.3656
## surface_area_m2 0.15169 -0.98843 0.3040 0.4016
## distance_to_ocean_min_m -0.87056 0.49206 0.3997 0.3796
## distance_to_ocean_mean_m -0.81767 0.57569 0.3986 0.5295
## distance_to_ocean_median_m -0.83592 0.54885 0.3857 0.5694
## tidal_lag_time_minutes -0.89856 0.43884 0.2671 0.5085
## tidal_efficiency 0.91858 -0.39523 0.2372 0.5944
## perimeter_fromSat 0.26271 -0.96487 0.2274 0.5924
## max_depth 0.12578 -0.99206 0.2460 0.1988
## logArea 0.31719 -0.94836 0.2397 0.4585
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdbom_efp <- p.adjust.envfit(fdbom_ef)## Adjustment of significance by bonferroni methodfdbom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.13170 -0.99129 0.2733 1
## volume_m3 0.13131 -0.99134 0.2728 1
## surface_area_m2 0.15169 -0.98843 0.3040 1
## distance_to_ocean_min_m -0.87056 0.49206 0.3997 1
## distance_to_ocean_mean_m -0.81767 0.57569 0.3986 1
## distance_to_ocean_median_m -0.83592 0.54885 0.3857 1
## tidal_lag_time_minutes -0.89856 0.43884 0.2671 1
## tidal_efficiency 0.91858 -0.39523 0.2372 1
## perimeter_fromSat 0.26271 -0.96487 0.2274 1
## max_depth 0.12578 -0.99206 0.2460 1
## logArea 0.31719 -0.94836 0.2397 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
fdbso_ef <- envfit(fdbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
fdbso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.99010 0.14035 0.1084 0.4915
## volume_m3 0.99740 0.07206 0.1000 0.5564
## surface_area_m2 0.99882 -0.04861 0.1525 0.7013
## distance_to_ocean_min_m -0.99978 -0.02093 0.5928 0.2198
## distance_to_ocean_mean_m -0.99024 -0.13937 0.5002 0.4505
## distance_to_ocean_median_m -0.98841 -0.15182 0.5156 0.3996
## tidal_lag_time_minutes -0.84935 0.52784 0.3773 0.9810
## tidal_efficiency 0.80556 -0.59251 0.5135 0.6773
## perimeter_fromSat 0.94538 -0.32598 0.1479 0.7493
## max_depth -0.82197 -0.56953 0.0417 0.9071
## logArea 0.56914 -0.82224 0.0960 0.5964
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fdbso_efp <- p.adjust.envfit(fdbso_ef)## Adjustment of significance by bonferroni methodfdbso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.99010 0.14035 0.1084 1
## volume_m3 0.99740 0.07206 0.1000 1
## surface_area_m2 0.99882 -0.04861 0.1525 1
## distance_to_ocean_min_m -0.99978 -0.02093 0.5928 1
## distance_to_ocean_mean_m -0.99024 -0.13937 0.5002 1
## distance_to_ocean_median_m -0.98841 -0.15182 0.5156 1
## tidal_lag_time_minutes -0.84935 0.52784 0.3773 1
## tidal_efficiency 0.80556 -0.59251 0.5135 1
## perimeter_fromSat 0.94538 -0.32598 0.1479 1
## max_depth -0.82197 -0.56953 0.0417 1
## logArea 0.56914 -0.82224 0.0960 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000### Species
fds_ef <- envfit(fd_NMDS, surveyed_sites_lake, permutations = 1000, na.rm = TRUE)
fds_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## Abudefduf_lorenzi -0.23604 -0.97174 0.0149 0.940060
## Abudefduf_septemfasciatus 0.99528 0.09709 0.0169 0.679321
## Abudefduf_sexfasciatus -0.23604 -0.97174 0.0149 0.940060
## Acanthurus_lineatus 0.63016 0.77647 0.0213 0.397602
## Acanthurus_nigricauda 0.97616 0.21705 0.0556 0.536464
## Acanthurus_sp 0.90503 -0.42535 0.0199 0.485514
## Acanthurus_xanthopterus 0.75012 0.66130 0.1882 0.162837
## Acentrogobius_janthinopterus -0.83821 0.54535 0.3818 0.009990 **
## Amblyeleotris_gymnocephala 0.95123 0.30849 0.0155 0.712288
## Amblyglyphidodon_curacao 0.60738 -0.79441 0.0382 0.681319
## Amblygobius_buanensis 0.85471 0.51911 0.3321 0.006993 **
## Amblygobius_decussatus 0.25880 -0.96593 0.0856 0.227772
## Amblygobius_esakiae 0.90503 -0.42535 0.0199 0.485514
## Amblygobius_linki 0.66607 0.74589 0.0187 0.589411
## Amblygobius_phalaena 0.97143 0.23734 0.0315 0.819181
## Amphiprion_clarkii 0.96121 -0.27583 0.0202 0.441558
## Ancistrogobius_dipus 0.71133 0.70286 0.0134 0.796204
## Apogonichthyoides_melas 0.71133 0.70286 0.0134 0.796204
## Arcygobius_baliurus 0.81541 0.57889 0.0155 0.694306
## Arothron_reticularis 0.74787 0.66385 0.0129 0.858142
## Asterropteryx_semipunctata 0.99445 0.10516 0.0539 0.554446
## Asterropteryx_sp 0.66607 0.74589 0.0187 0.589411
## Atherinomorus_lacunosus 0.97434 0.22506 0.0160 0.852148
## Atule_mate 0.63016 0.77647 0.0213 0.397602
## Balistoides_viridescens 0.89130 0.45342 0.1281 0.300699
## Bolbometopon_muricatum 0.36614 -0.93056 0.0885 0.313686
## Caesio_caerulaurea 0.71464 0.69950 0.0341 0.705295
## Caesio_cuning 0.48562 -0.87417 0.1028 0.392607
## Caesio_teres 0.95123 0.30849 0.0155 0.712288
## Cantherhines_dumerilii 0.96121 -0.27583 0.0202 0.441558
## Canthigaster_bennetti 0.96121 -0.27583 0.0202 0.441558
## Canthigaster_solandri 0.99528 0.09709 0.0169 0.679321
## Caranx_ignobilis 0.98711 0.16003 0.0146 0.756244
## Caranx_melampygus 0.38822 -0.92157 0.0053 0.986014
## Caranx_papuensis 0.95123 0.30849 0.0155 0.712288
## Caranx_sexfasciatus 0.80521 0.59299 0.0939 0.447552
## Cephalopholis_argus -0.44261 -0.89672 0.2031 0.189810
## Cephalopholis_boenak 0.93543 -0.35350 0.0421 0.552448
## Chaetodon_auriga 0.96905 -0.24688 0.2867 0.035964 *
## Chaetodon_bennetti 0.90821 0.41852 0.0416 0.556444
## Chaetodon_ephippium 0.89898 -0.43800 0.2449 0.061938 .
## Chaetodon_kleinii 0.92236 0.38633 0.0607 0.466533
## Chaetodon_lunula 0.87881 0.47717 0.1594 0.161838
## Chaetodon_lunulatus 0.75306 -0.65795 0.1443 0.227772
## Chaetodon_melannotus 0.71741 0.69665 0.0193 0.543457
## Chaetodon_ocellicaudus 0.98711 0.16003 0.0146 0.756244
## Chaetodon_octofasciatus 0.93543 -0.35350 0.0421 0.552448
## Chaetodon_rafflesii 0.98855 0.15093 0.0850 0.425574
## Chaetodon_semeion 0.95137 0.30805 0.0401 0.568432
## Chaetodon_trifascialis 0.96121 -0.27583 0.0202 0.441558
## Chaetodon_ulietensis 0.51780 -0.85550 0.1000 0.292707
## Chaetodon_vagabundus 0.97243 -0.23319 0.2893 0.029970 *
## Chaetodontoplus_poliourus 0.96121 -0.27583 0.0202 0.441558
## Cheilinus_fasciatus 0.98894 0.14830 0.0648 0.472527
## Cheilinus_trilobatus 0.63016 0.77647 0.0213 0.397602
## Cheilinus_undulatus 0.25413 -0.96717 0.0745 0.348651
## Cheilodipterus_artus 0.21333 -0.97698 0.0100 0.866134
## Cheilodipterus_isostigma 0.27334 -0.96192 0.0694 0.393606
## Cheilodipterus_quinquelineatus 0.90937 -0.41598 0.2468 0.062937 .
## Cheilodipterus_singapurensis 0.75461 0.65618 0.0320 0.821179
## Chlorurus_bleekeri 0.51454 -0.85747 0.1093 0.276723
## Chlorurus_microrhinos 0.99678 -0.08023 0.0361 0.655345
## Chlorurus_spilurus 0.98855 0.15093 0.0850 0.425574
## Choerodon_anchorago 0.99634 -0.08545 0.3920 0.000999 ***
## Chromis_viridis 0.42128 -0.90693 0.0765 0.415584
## Chrysiptera_biocellata 0.93032 0.36674 0.0338 0.756244
## Chrysiptera_oxycephala 0.35038 -0.93661 0.0784 0.478521
## Corythoichthys_ocellatus 0.96121 -0.27583 0.0202 0.441558
## Cryptocentrus_caeruleomaculatus 0.67552 -0.73734 0.0692 0.542458
## Cryptocentrus_cyanospilotus 0.20804 0.97812 0.0024 1.000000
## Cryptocentrus_leptocephalus 0.91608 0.40099 0.0314 0.826174
## Cryptocentrus_strigilliceps 0.51009 -0.86012 0.0988 0.336663
## Ctenochaetus_striatus 0.16567 -0.98618 0.0700 0.516484
## Ctenogobiops_pomastictus 0.71133 0.70286 0.0134 0.796204
## Cymbacephalus_beauforti 0.98711 0.16003 0.0146 0.756244
## Dascyllus_aruanus 0.59232 -0.80570 0.0848 0.431568
## Dascyllus_trimaculatus 0.96121 -0.27583 0.0202 0.441558
## Diplogrammus_goramensis 0.87290 0.48789 0.0290 0.887113
## Diproctacanthus_xanthurus 0.90821 0.41852 0.0416 0.556444
## Dischistodus_chrysopoecilus 0.88448 0.46658 0.0280 0.918082
## Dischistodus_perspicillatus 0.80273 -0.59634 0.1279 0.292707
## Doboatherina_duodecimalis 0.28051 -0.95985 0.1295 0.267732
## Eleotris_fusca -0.30762 0.95151 0.3599 0.028971 *
## Epibulus_brevis 0.60942 -0.79285 0.1286 0.212787
## Epinephelus_coeruleopunctatus 0.73539 0.67765 0.0358 0.678322
## Epinephelus_merra 0.53712 -0.84351 0.1002 0.290709
## Epinephelus_sp 0.73008 0.68336 0.0125 0.906094
## Eviota_atriventris 0.96020 0.27931 0.0527 0.563437
## Eviota_bifasciata 0.82173 -0.56988 0.1761 0.128871
## Eviota_fallax 0.73397 -0.67919 0.1533 0.160839
## Eviota_lachdeberei 0.85291 0.52206 0.0721 0.566434
## Eviota_maculosa 0.13342 -0.99106 0.0988 0.310689
## Eviota_sigillata 0.83462 0.55083 0.0361 0.656344
## Eviota_sp 0.66607 0.74589 0.0187 0.589411
## Eviota_storthynx 0.84717 0.53133 0.0539 0.538462
## Exyrias_belissimus 0.91233 -0.40947 0.1514 0.198801
## Exyrias_puntang -0.04985 0.99876 0.2868 0.022977 *
## Favonigobius_reichei 0.91608 0.40099 0.0314 0.826174
## Fibramia_lateralis 0.04555 -0.99896 0.0231 0.810190
## Fibramia_thermalis 0.66629 -0.74569 0.0970 0.373626
## Fusigobius_signipinnis 0.99878 0.04934 0.0549 0.548452
## Gerres_erythrourus 0.98711 0.16003 0.0146 0.756244
## Gerres_oyena 0.99183 0.12758 0.0330 0.791209
## Gladiogobius_ensifer 0.13342 -0.99106 0.0988 0.310689
## Gnathanodon_speciosus 0.49542 0.86865 0.0130 0.983017
## Gobiodon_okinawae 0.63016 0.77647 0.0213 0.397602
## Gymnothorax_pictus 0.93032 0.36674 0.0338 0.756244
## Halichoeres_chloropterus 0.77484 -0.63216 0.0536 0.619381
## Halichoeres_leucurus 0.98247 0.18643 0.0862 0.428571
## Halichoeres_marginatus 0.98711 0.16003 0.0146 0.756244
## Halichoeres_melanurus 0.18557 -0.98263 0.0488 0.642358
## Halichoeres_papilionaceus 0.80966 0.58690 0.0555 0.530470
## Halichoeres_trimaculatus 0.99183 0.12758 0.0330 0.791209
## Hemiglyphidodon_plagiometopon 0.45124 -0.89240 0.1069 0.347652
## Hemigymnus_melapterus 0.99678 -0.08023 0.0361 0.655345
## Heniochus_chrysostomus 0.93765 0.34758 0.0595 0.492507
## Heniochus_monoceros 0.84717 0.53133 0.0539 0.538462
## Herklotsichthys_quadrimaculatus 0.98711 0.16003 0.0146 0.756244
## Hipposcarus_longiceps 0.44740 -0.89434 0.1113 0.283716
## Istigobius_decoratus 0.98711 0.16003 0.0146 0.756244
## Koumansetta_rainfordi 0.96121 -0.27583 0.0202 0.441558
## Kyphosus_cinerascens -0.21315 -0.97702 0.0174 0.905095
## Lethrinus_erythropterus 0.88112 0.47288 0.0682 0.594406
## Lethrinus_harak 0.83503 0.55020 0.1182 0.333666
## Lethrinus_obsoletus 0.71133 0.70286 0.0134 0.796204
## Lethrinus_olivaceus 0.71133 0.70286 0.0134 0.796204
## Lutjanus_argentimaculatus 0.42547 0.90497 0.1341 0.256743
## Lutjanus_biguttatus -0.25335 -0.96737 0.0169 0.932068
## Lutjanus_bohar 0.95137 0.30805 0.0401 0.568432
## Lutjanus_decussatus 0.71133 0.70286 0.0134 0.796204
## Lutjanus_ehrenbergii 0.78771 0.61604 0.0911 0.408591
## Lutjanus_fulviflamma 0.87488 0.48435 0.0859 0.477522
## Lutjanus_fulvus 0.55443 0.83223 0.3632 0.007992 **
## Lutjanus_gibbus 0.91822 0.39606 0.0762 0.493506
## Lutjanus_monostigma 0.89152 0.45297 0.0285 0.886114
## Lutjanus_russellii 0.66607 0.74589 0.0187 0.589411
## Macrodontogobius_wilburi 0.75306 -0.65795 0.1443 0.227772
## Megalops_cyprinoides -0.17801 0.98403 0.5178 0.051948 .
## Meiacanthus_ditrema 0.90503 -0.42535 0.0199 0.485514
## Meiacanthus_grammistes 0.93543 -0.35350 0.0421 0.552448
## Monodactylus_argenteus 0.68024 0.73299 0.0316 0.801199
## Monotaxis_grandoculis -0.02102 -0.99978 0.0121 0.869131
## Mugilogobius_cavifrons -0.60174 0.79870 0.2146 0.144855
## Mulloidichthys_flavolineatus 0.98711 0.16003 0.0146 0.756244
## Myripristis_adusta 0.81258 0.58285 0.1256 0.293706
## Myripristis_sp 0.81541 0.57889 0.0155 0.694306
## Myripristis_violacea 0.96121 -0.27583 0.0202 0.441558
## Naso_brevirostris 0.98495 0.17286 0.0776 0.515485
## Naso_vlamingii 0.87638 0.48162 0.0571 0.507493
## Nectamia_viria 0.71741 0.69665 0.0193 0.543457
## Neoglyphidodon_melas -0.44261 -0.89672 0.2031 0.189810
## Neoniphon_argenteus 0.77492 0.63206 0.0508 0.619381
## Neoniphon_opercularis -0.44261 -0.89672 0.2031 0.189810
## Neoniphon_sammara 0.95549 0.29501 0.0951 0.408591
## Neopomacentrus_nemurus 0.25265 -0.96756 0.0635 0.516484
## Omobranchus_obliquus 0.60663 0.79498 0.0333 0.765235
## Oplopomops_diacanthus 0.98711 0.16003 0.0146 0.756244
## Oxycheilinus_celebicus 0.22026 -0.97544 0.0157 0.798202
## Parapercis_cylindrica 0.98711 0.16003 0.0146 0.756244
## Parioglossus_formosus -0.10981 0.99395 0.2528 0.101898
## Parioglossus_philippinus 0.75917 0.65090 0.0543 0.517483
## Parioglossus_sp 0.98512 0.17185 0.0366 0.651349
## Parupeneus_barberinus 0.96514 0.26174 0.1647 0.157842
## Parupeneus_multifasciatus 0.88390 -0.46768 0.2084 0.103896
## Pentapodus_trivittatus 0.87597 -0.48237 0.2074 0.104895
## Periophthalmus_argentilineatus 0.99528 0.09709 0.0169 0.679321
## Pervagor_janthinosoma 0.63016 0.77647 0.0213 0.397602
## Pervagor_nigrolineatus 0.37832 -0.92567 0.0786 0.384615
## Petroscirtes_breviceps 0.99810 0.06157 0.1038 0.343656
## Platax_orbicularis 0.76468 0.64441 0.0303 0.852148
## Platax_pinnatus 0.95123 0.30849 0.0155 0.712288
## Platax_sp 0.73008 0.68336 0.0125 0.906094
## Plectorhinchus_albovittatus 0.66607 0.74589 0.0187 0.589411
## Plectorhinchus_chaetodonoides 0.13342 -0.99106 0.0988 0.310689
## Plectorhinchus_gibbosus 0.98711 0.16003 0.0146 0.756244
## Plectropomus_leopardus 0.96121 -0.27583 0.0202 0.441558
## Pomacanthus_sexstriatus 0.86223 0.50652 0.0349 0.698302
## Pomacentrus_adelus 0.99528 0.09709 0.0169 0.679321
## Pomacentrus_amboinensis 0.96121 -0.27583 0.0202 0.441558
## Pomacentrus_burroughi 0.84161 -0.54008 0.1823 0.120879
## Pomacentrus_grammorhynchus 0.98711 0.16003 0.0146 0.756244
## Pomacentrus_nigromanus -0.15413 -0.98805 0.0249 0.864136
## Pomacentrus_pavo 0.96121 -0.27583 0.0202 0.441558
## Pomacentrus_simsiang 0.92787 -0.37291 0.2872 0.019980 *
## Pomacentrus_sp -0.32954 -0.94414 0.0638 0.480519
## Pomacentrus_taeniometopon 0.66607 0.74589 0.0187 0.589411
## Pseudobalistes_flavimarginatus 0.95774 0.28762 0.1323 0.283716
## Pseudochromis_fuscus 0.96121 -0.27583 0.0202 0.441558
## Ptereleotris_brachyptera 1.00000 -0.00178 0.0370 0.600400
## Ptereleotris_evides 0.96121 -0.27583 0.0202 0.441558
## Pterocaesio_tile 0.71133 0.70286 0.0134 0.796204
## Pterocaesio_trilineata 0.71741 0.69665 0.0193 0.543457
## Pterois_volitans 0.95123 0.30849 0.0155 0.712288
## Rastrelliger_kanagurta 0.31497 -0.94910 0.0673 0.425574
## Rhabdamia_gracilis 0.83306 0.55318 0.0727 0.535465
## Rhinecanthus_aculeatus 0.88114 0.47286 0.0607 0.490509
## Salarias_segmentatus 0.90429 0.42691 0.1687 0.157842
## Sargocentron_diadema 0.67154 0.74097 0.0425 0.533467
## Sargocentron_spiniferum 0.81541 0.57889 0.0155 0.694306
## Saurida_gracilis 0.63016 0.77647 0.0213 0.397602
## Scarus_dimidiatus 0.98855 0.15093 0.0850 0.425574
## Scarus_flavipectoralis 0.90821 0.41852 0.0416 0.556444
## Scarus_ghobban 0.98512 0.17185 0.0366 0.651349
## Scarus_hypselopterus 0.63016 0.77647 0.0213 0.397602
## Scarus_oviceps 0.90503 -0.42535 0.0199 0.485514
## Scarus_psittacus 0.98114 0.19329 0.1072 0.312687
## Scarus_quoyi 0.96121 -0.27583 0.0202 0.441558
## Scarus_rivulatus 0.25880 -0.96593 0.0856 0.227772
## Scatophagus_argus 0.74787 0.66385 0.0129 0.858142
## Scolopsis_ciliata 0.73160 -0.68174 0.1706 0.151848
## Scolopsis_lineata 0.91608 0.40099 0.0314 0.826174
## Scolopsis_margaritifera 0.35816 -0.93366 0.0807 0.458541
## Scolopsis_trilineata 0.74721 0.66459 0.0530 0.575425
## Siganus_doliatus 0.36614 -0.93056 0.0885 0.313686
## Siganus_fuscescens 0.77735 0.62907 0.0530 0.562438
## Siganus_lineatus 0.58175 0.81337 0.2995 0.023976 *
## Siganus_puellus 0.35553 -0.93466 0.0998 0.293706
## Siganus_punctatissimus 0.96121 -0.27583 0.0202 0.441558
## Siganus_punctatus 0.96121 -0.27583 0.0202 0.441558
## Signigobius_biocellatus 0.63016 0.77647 0.0213 0.397602
## Silhouettea_sp 0.20804 0.97812 0.0024 1.000000
## Sphaeramia_nematoptera 0.71648 -0.69761 0.1362 0.250749
## Sphaeramia_orbicularis 0.63963 -0.76869 0.1605 0.206793
## Sphyraena_barracuda 0.83901 0.54412 0.0921 0.405594
## Sphyraena_obtusata 0.80339 0.59545 0.0117 0.946054
## Sphyraena_qenie 0.81541 0.57889 0.0155 0.694306
## Stegastes_nigricans 0.98711 0.16003 0.0146 0.756244
## Stegastes_punctatus 0.80694 0.59063 0.0365 0.635365
## Stethojulis_strigiventer 0.95267 0.30400 0.0516 0.590410
## Strongylura_incisa 0.71192 0.70226 0.0382 0.634366
## Synodus_variegatus 0.31497 -0.94910 0.0673 0.425574
## Taeniamia_zosterophora 0.35696 -0.93412 0.0896 0.357642
## Taeniurops_meyeni 0.71133 0.70286 0.0134 0.796204
## Toxotes_jaculatrix 0.87121 0.49091 0.1170 0.337662
## Tylosurus_punctulatus 0.88859 0.45870 0.0283 0.881119
## Upeneus_taeniopterus 0.81541 0.57889 0.0155 0.694306
## Valenciennea_muralis 0.83345 0.55260 0.0488 0.626374
## Valenciennea_parva 0.95123 0.30849 0.0155 0.712288
## Valenciennea_randalli 0.95123 0.30849 0.0155 0.712288
## Zanclus_cornutus 0.99878 0.04934 0.0549 0.548452
## Zebrasoma_scopas 0.96121 -0.27583 0.0202 0.441558
## Zebrasoma_velifer 0.78688 -0.61711 0.1816 0.127872
## Zenarchopterus_dispar 0.98230 -0.18729 0.2631 0.058941 .
## Zenarchopterus_gilli 0.99844 -0.05578 0.0867 0.455544
## Zoramia_leptacanthus 0.98711 0.16003 0.0146 0.756244
## Zoramia_viridiventer 0.51118 -0.85947 0.0923 0.371628
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 1000# By stratification
fds_ef <- envfit(fd_NMDS, surveyed_sites_lake, permutations = 1000, na.rm = TRUE, strata = env[-20,19])
fds_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## Abudefduf_lorenzi -0.23604 -0.97174 0.0149 0.88711
## Abudefduf_septemfasciatus 0.99528 0.09709 0.0169 0.34865
## Abudefduf_sexfasciatus -0.23604 -0.97174 0.0149 0.88711
## Acanthurus_lineatus 0.63016 0.77647 0.0213 0.51249
## Acanthurus_nigricauda 0.97616 0.21705 0.0556 0.55345
## Acanthurus_sp 0.90503 -0.42535 0.0199 0.82817
## Acanthurus_xanthopterus 0.75012 0.66130 0.1882 0.24875
## Acentrogobius_janthinopterus -0.83821 0.54535 0.3818 0.35964
## Amblyeleotris_gymnocephala 0.95123 0.30849 0.0155 0.62937
## Amblyglyphidodon_curacao 0.60738 -0.79441 0.0382 0.85215
## Amblygobius_buanensis 0.85471 0.51911 0.3321 0.36164
## Amblygobius_decussatus 0.25880 -0.96593 0.0856 0.32068
## Amblygobius_esakiae 0.90503 -0.42535 0.0199 0.82817
## Amblygobius_linki 0.66607 0.74589 0.0187 0.26074
## Amblygobius_phalaena 0.97143 0.23734 0.0315 0.91109
## Amphiprion_clarkii 0.96121 -0.27583 0.0202 0.69730
## Ancistrogobius_dipus 0.71133 0.70286 0.0134 0.73327
## Apogonichthyoides_melas 0.71133 0.70286 0.0134 0.73327
## Arcygobius_baliurus 0.81541 0.57889 0.0155 0.49151
## Arothron_reticularis 0.74787 0.66385 0.0129 0.86014
## Asterropteryx_semipunctata 0.99445 0.10516 0.0539 0.91309
## Asterropteryx_sp 0.66607 0.74589 0.0187 0.26074
## Atherinomorus_lacunosus 0.97434 0.22506 0.0160 0.85415
## Atule_mate 0.63016 0.77647 0.0213 0.51249
## Balistoides_viridescens 0.89130 0.45342 0.1281 0.86513
## Bolbometopon_muricatum 0.36614 -0.93056 0.0885 0.48551
## Caesio_caerulaurea 0.71464 0.69950 0.0341 0.28472
## Caesio_cuning 0.48562 -0.87417 0.1028 0.57742
## Caesio_teres 0.95123 0.30849 0.0155 0.62937
## Cantherhines_dumerilii 0.96121 -0.27583 0.0202 0.69730
## Canthigaster_bennetti 0.96121 -0.27583 0.0202 0.69730
## Canthigaster_solandri 0.99528 0.09709 0.0169 0.34865
## Caranx_ignobilis 0.98711 0.16003 0.0146 1.00000
## Caranx_melampygus 0.38822 -0.92157 0.0053 0.97702
## Caranx_papuensis 0.95123 0.30849 0.0155 0.62937
## Caranx_sexfasciatus 0.80521 0.59299 0.0939 0.47952
## Cephalopholis_argus -0.44261 -0.89672 0.2031 0.48951
## Cephalopholis_boenak 0.93543 -0.35350 0.0421 0.67133
## Chaetodon_auriga 0.96905 -0.24688 0.2867 0.83017
## Chaetodon_bennetti 0.90821 0.41852 0.0416 0.74625
## Chaetodon_ephippium 0.89898 -0.43800 0.2449 0.84216
## Chaetodon_kleinii 0.92236 0.38633 0.0607 0.71029
## Chaetodon_lunula 0.87881 0.47717 0.1594 0.09191 .
## Chaetodon_lunulatus 0.75306 -0.65795 0.1443 0.63337
## Chaetodon_melannotus 0.71741 0.69665 0.0193 0.11988
## Chaetodon_ocellicaudus 0.98711 0.16003 0.0146 1.00000
## Chaetodon_octofasciatus 0.93543 -0.35350 0.0421 0.67133
## Chaetodon_rafflesii 0.98855 0.15093 0.0850 1.00000
## Chaetodon_semeion 0.95137 0.30805 0.0401 0.39960
## Chaetodon_trifascialis 0.96121 -0.27583 0.0202 0.69730
## Chaetodon_ulietensis 0.51780 -0.85550 0.1000 0.42857
## Chaetodon_vagabundus 0.97243 -0.23319 0.2893 0.45455
## Chaetodontoplus_poliourus 0.96121 -0.27583 0.0202 0.69730
## Cheilinus_fasciatus 0.98894 0.14830 0.0648 0.85315
## Cheilinus_trilobatus 0.63016 0.77647 0.0213 0.51249
## Cheilinus_undulatus 0.25413 -0.96717 0.0745 0.47852
## Cheilodipterus_artus 0.21333 -0.97698 0.0100 0.86613
## Cheilodipterus_isostigma 0.27334 -0.96192 0.0694 0.18182
## Cheilodipterus_quinquelineatus 0.90937 -0.41598 0.2468 0.79121
## Cheilodipterus_singapurensis 0.75461 0.65618 0.0320 0.56044
## Chlorurus_bleekeri 0.51454 -0.85747 0.1093 0.66733
## Chlorurus_microrhinos 0.99678 -0.08023 0.0361 0.93906
## Chlorurus_spilurus 0.98855 0.15093 0.0850 1.00000
## Choerodon_anchorago 0.99634 -0.08545 0.3920 0.79920
## Chromis_viridis 0.42128 -0.90693 0.0765 0.43057
## Chrysiptera_biocellata 0.93032 0.36674 0.0338 0.33067
## Chrysiptera_oxycephala 0.35038 -0.93661 0.0784 0.71928
## Corythoichthys_ocellatus 0.96121 -0.27583 0.0202 0.69730
## Cryptocentrus_caeruleomaculatus 0.67552 -0.73734 0.0692 0.43057
## Cryptocentrus_cyanospilotus 0.20804 0.97812 0.0024 1.00000
## Cryptocentrus_leptocephalus 0.91608 0.40099 0.0314 0.92208
## Cryptocentrus_strigilliceps 0.51009 -0.86012 0.0988 0.48152
## Ctenochaetus_striatus 0.16567 -0.98618 0.0700 0.73127
## Ctenogobiops_pomastictus 0.71133 0.70286 0.0134 0.73327
## Cymbacephalus_beauforti 0.98711 0.16003 0.0146 1.00000
## Dascyllus_aruanus 0.59232 -0.80570 0.0848 0.83816
## Dascyllus_trimaculatus 0.96121 -0.27583 0.0202 0.69730
## Diplogrammus_goramensis 0.87290 0.48789 0.0290 0.94605
## Diproctacanthus_xanthurus 0.90821 0.41852 0.0416 0.74625
## Dischistodus_chrysopoecilus 0.88448 0.46658 0.0280 0.98102
## Dischistodus_perspicillatus 0.80273 -0.59634 0.1279 0.88112
## Doboatherina_duodecimalis 0.28051 -0.95985 0.1295 0.18681
## Eleotris_fusca -0.30762 0.95151 0.3599 0.27373
## Epibulus_brevis 0.60942 -0.79285 0.1286 0.48851
## Epinephelus_coeruleopunctatus 0.73539 0.67765 0.0358 0.23277
## Epinephelus_merra 0.53712 -0.84351 0.1002 0.44855
## Epinephelus_sp 0.73008 0.68336 0.0125 0.89111
## Eviota_atriventris 0.96020 0.27931 0.0527 0.71528
## Eviota_bifasciata 0.82173 -0.56988 0.1761 0.47752
## Eviota_fallax 0.73397 -0.67919 0.1533 0.44855
## Eviota_lachdeberei 0.85291 0.52206 0.0721 0.74525
## Eviota_maculosa 0.13342 -0.99106 0.0988 0.33167
## Eviota_sigillata 0.83462 0.55083 0.0361 0.18681
## Eviota_sp 0.66607 0.74589 0.0187 0.26074
## Eviota_storthynx 0.84717 0.53133 0.0539 0.63936
## Exyrias_belissimus 0.91233 -0.40947 0.1514 0.95504
## Exyrias_puntang -0.04985 0.99876 0.2868 0.18781
## Favonigobius_reichei 0.91608 0.40099 0.0314 0.92208
## Fibramia_lateralis 0.04555 -0.99896 0.0231 0.80020
## Fibramia_thermalis 0.66629 -0.74569 0.0970 0.27373
## Fusigobius_signipinnis 0.99878 0.04934 0.0549 0.91109
## Gerres_erythrourus 0.98711 0.16003 0.0146 1.00000
## Gerres_oyena 0.99183 0.12758 0.0330 0.78222
## Gladiogobius_ensifer 0.13342 -0.99106 0.0988 0.33167
## Gnathanodon_speciosus 0.49542 0.86865 0.0130 0.97003
## Gobiodon_okinawae 0.63016 0.77647 0.0213 0.51249
## Gymnothorax_pictus 0.93032 0.36674 0.0338 0.33067
## Halichoeres_chloropterus 0.77484 -0.63216 0.0536 0.87812
## Halichoeres_leucurus 0.98247 0.18643 0.0862 0.80020
## Halichoeres_marginatus 0.98711 0.16003 0.0146 1.00000
## Halichoeres_melanurus 0.18557 -0.98263 0.0488 0.68631
## Halichoeres_papilionaceus 0.80966 0.58690 0.0555 0.87512
## Halichoeres_trimaculatus 0.99183 0.12758 0.0330 0.78222
## Hemiglyphidodon_plagiometopon 0.45124 -0.89240 0.1069 0.71029
## Hemigymnus_melapterus 0.99678 -0.08023 0.0361 0.93906
## Heniochus_chrysostomus 0.93765 0.34758 0.0595 0.94106
## Heniochus_monoceros 0.84717 0.53133 0.0539 0.63936
## Herklotsichthys_quadrimaculatus 0.98711 0.16003 0.0146 1.00000
## Hipposcarus_longiceps 0.44740 -0.89434 0.1113 0.52647
## Istigobius_decoratus 0.98711 0.16003 0.0146 1.00000
## Koumansetta_rainfordi 0.96121 -0.27583 0.0202 0.69730
## Kyphosus_cinerascens -0.21315 -0.97702 0.0174 0.88711
## Lethrinus_erythropterus 0.88112 0.47288 0.0682 0.90709
## Lethrinus_harak 0.83503 0.55020 0.1182 0.79121
## Lethrinus_obsoletus 0.71133 0.70286 0.0134 0.73327
## Lethrinus_olivaceus 0.71133 0.70286 0.0134 0.73327
## Lutjanus_argentimaculatus 0.42547 0.90497 0.1341 0.12188
## Lutjanus_biguttatus -0.25335 -0.96737 0.0169 0.84615
## Lutjanus_bohar 0.95137 0.30805 0.0401 0.39960
## Lutjanus_decussatus 0.71133 0.70286 0.0134 0.73327
## Lutjanus_ehrenbergii 0.78771 0.61604 0.0911 0.90509
## Lutjanus_fulviflamma 0.87488 0.48435 0.0859 0.33666
## Lutjanus_fulvus 0.55443 0.83223 0.3632 0.02398 *
## Lutjanus_gibbus 0.91822 0.39606 0.0762 0.84416
## Lutjanus_monostigma 0.89152 0.45297 0.0285 0.87812
## Lutjanus_russellii 0.66607 0.74589 0.0187 0.26074
## Macrodontogobius_wilburi 0.75306 -0.65795 0.1443 0.63337
## Megalops_cyprinoides -0.17801 0.98403 0.5178 0.10789
## Meiacanthus_ditrema 0.90503 -0.42535 0.0199 0.82817
## Meiacanthus_grammistes 0.93543 -0.35350 0.0421 0.67133
## Monodactylus_argenteus 0.68024 0.73299 0.0316 0.63936
## Monotaxis_grandoculis -0.02102 -0.99978 0.0121 0.80819
## Mugilogobius_cavifrons -0.60174 0.79870 0.2146 0.36663
## Mulloidichthys_flavolineatus 0.98711 0.16003 0.0146 1.00000
## Myripristis_adusta 0.81258 0.58285 0.1256 0.33966
## Myripristis_sp 0.81541 0.57889 0.0155 0.49151
## Myripristis_violacea 0.96121 -0.27583 0.0202 0.69730
## Naso_brevirostris 0.98495 0.17286 0.0776 0.81219
## Naso_vlamingii 0.87638 0.48162 0.0571 0.78921
## Nectamia_viria 0.71741 0.69665 0.0193 0.11988
## Neoglyphidodon_melas -0.44261 -0.89672 0.2031 0.48951
## Neoniphon_argenteus 0.77492 0.63206 0.0508 0.49051
## Neoniphon_opercularis -0.44261 -0.89672 0.2031 0.48951
## Neoniphon_sammara 0.95549 0.29501 0.0951 0.92408
## Neopomacentrus_nemurus 0.25265 -0.96756 0.0635 0.60240
## Omobranchus_obliquus 0.60663 0.79498 0.0333 0.53846
## Oplopomops_diacanthus 0.98711 0.16003 0.0146 1.00000
## Oxycheilinus_celebicus 0.22026 -0.97544 0.0157 0.83916
## Parapercis_cylindrica 0.98711 0.16003 0.0146 1.00000
## Parioglossus_formosus -0.10981 0.99395 0.2528 0.04396 *
## Parioglossus_philippinus 0.75917 0.65090 0.0543 0.63337
## Parioglossus_sp 0.98512 0.17185 0.0366 0.60839
## Parupeneus_barberinus 0.96514 0.26174 0.1647 0.79620
## Parupeneus_multifasciatus 0.88390 -0.46768 0.2084 0.46653
## Pentapodus_trivittatus 0.87597 -0.48237 0.2074 0.82817
## Periophthalmus_argentilineatus 0.99528 0.09709 0.0169 0.34865
## Pervagor_janthinosoma 0.63016 0.77647 0.0213 0.51249
## Pervagor_nigrolineatus 0.37832 -0.92567 0.0786 0.36464
## Petroscirtes_breviceps 0.99810 0.06157 0.1038 0.87313
## Platax_orbicularis 0.76468 0.64441 0.0303 0.63736
## Platax_pinnatus 0.95123 0.30849 0.0155 0.62937
## Platax_sp 0.73008 0.68336 0.0125 0.89111
## Plectorhinchus_albovittatus 0.66607 0.74589 0.0187 0.26074
## Plectorhinchus_chaetodonoides 0.13342 -0.99106 0.0988 0.33167
## Plectorhinchus_gibbosus 0.98711 0.16003 0.0146 1.00000
## Plectropomus_leopardus 0.96121 -0.27583 0.0202 0.69730
## Pomacanthus_sexstriatus 0.86223 0.50652 0.0349 0.67632
## Pomacentrus_adelus 0.99528 0.09709 0.0169 0.34865
## Pomacentrus_amboinensis 0.96121 -0.27583 0.0202 0.69730
## Pomacentrus_burroughi 0.84161 -0.54008 0.1823 0.42957
## Pomacentrus_grammorhynchus 0.98711 0.16003 0.0146 1.00000
## Pomacentrus_nigromanus -0.15413 -0.98805 0.0249 0.74525
## Pomacentrus_pavo 0.96121 -0.27583 0.0202 0.69730
## Pomacentrus_simsiang 0.92787 -0.37291 0.2872 0.80020
## Pomacentrus_sp -0.32954 -0.94414 0.0638 0.53646
## Pomacentrus_taeniometopon 0.66607 0.74589 0.0187 0.26074
## Pseudobalistes_flavimarginatus 0.95774 0.28762 0.1323 0.94705
## Pseudochromis_fuscus 0.96121 -0.27583 0.0202 0.69730
## Ptereleotris_brachyptera 1.00000 -0.00178 0.0370 0.59141
## Ptereleotris_evides 0.96121 -0.27583 0.0202 0.69730
## Pterocaesio_tile 0.71133 0.70286 0.0134 0.73327
## Pterocaesio_trilineata 0.71741 0.69665 0.0193 0.11988
## Pterois_volitans 0.95123 0.30849 0.0155 0.62937
## Rastrelliger_kanagurta 0.31497 -0.94910 0.0673 0.61538
## Rhabdamia_gracilis 0.83306 0.55318 0.0727 0.40160
## Rhinecanthus_aculeatus 0.88114 0.47286 0.0607 0.68931
## Salarias_segmentatus 0.90429 0.42691 0.1687 0.32368
## Sargocentron_diadema 0.67154 0.74097 0.0425 0.36863
## Sargocentron_spiniferum 0.81541 0.57889 0.0155 0.49151
## Saurida_gracilis 0.63016 0.77647 0.0213 0.51249
## Scarus_dimidiatus 0.98855 0.15093 0.0850 1.00000
## Scarus_flavipectoralis 0.90821 0.41852 0.0416 0.74625
## Scarus_ghobban 0.98512 0.17185 0.0366 0.60839
## Scarus_hypselopterus 0.63016 0.77647 0.0213 0.51249
## Scarus_oviceps 0.90503 -0.42535 0.0199 0.82817
## Scarus_psittacus 0.98114 0.19329 0.1072 0.76424
## Scarus_quoyi 0.96121 -0.27583 0.0202 0.69730
## Scarus_rivulatus 0.25880 -0.96593 0.0856 0.32068
## Scatophagus_argus 0.74787 0.66385 0.0129 0.86014
## Scolopsis_ciliata 0.73160 -0.68174 0.1706 0.61838
## Scolopsis_lineata 0.91608 0.40099 0.0314 0.92208
## Scolopsis_margaritifera 0.35816 -0.93366 0.0807 0.69231
## Scolopsis_trilineata 0.74721 0.66459 0.0530 0.25674
## Siganus_doliatus 0.36614 -0.93056 0.0885 0.48551
## Siganus_fuscescens 0.77735 0.62907 0.0530 0.93007
## Siganus_lineatus 0.58175 0.81337 0.2995 0.01998 *
## Siganus_puellus 0.35553 -0.93466 0.0998 0.29970
## Siganus_punctatissimus 0.96121 -0.27583 0.0202 0.69730
## Siganus_punctatus 0.96121 -0.27583 0.0202 0.69730
## Signigobius_biocellatus 0.63016 0.77647 0.0213 0.51249
## Silhouettea_sp 0.20804 0.97812 0.0024 1.00000
## Sphaeramia_nematoptera 0.71648 -0.69761 0.1362 0.88611
## Sphaeramia_orbicularis 0.63963 -0.76869 0.1605 0.20779
## Sphyraena_barracuda 0.83901 0.54412 0.0921 0.86014
## Sphyraena_obtusata 0.80339 0.59545 0.0117 1.00000
## Sphyraena_qenie 0.81541 0.57889 0.0155 0.49151
## Stegastes_nigricans 0.98711 0.16003 0.0146 1.00000
## Stegastes_punctatus 0.80694 0.59063 0.0365 0.87013
## Stethojulis_strigiventer 0.95267 0.30400 0.0516 0.76823
## Strongylura_incisa 0.71192 0.70226 0.0382 0.55045
## Synodus_variegatus 0.31497 -0.94910 0.0673 0.61538
## Taeniamia_zosterophora 0.35696 -0.93412 0.0896 0.45754
## Taeniurops_meyeni 0.71133 0.70286 0.0134 0.73327
## Toxotes_jaculatrix 0.87121 0.49091 0.1170 0.85215
## Tylosurus_punctulatus 0.88859 0.45870 0.0283 0.87912
## Upeneus_taeniopterus 0.81541 0.57889 0.0155 0.49151
## Valenciennea_muralis 0.83345 0.55260 0.0488 0.67233
## Valenciennea_parva 0.95123 0.30849 0.0155 0.62937
## Valenciennea_randalli 0.95123 0.30849 0.0155 0.62937
## Zanclus_cornutus 0.99878 0.04934 0.0549 0.91109
## Zebrasoma_scopas 0.96121 -0.27583 0.0202 0.69730
## Zebrasoma_velifer 0.78688 -0.61711 0.1816 0.72228
## Zenarchopterus_dispar 0.98230 -0.18729 0.2631 0.97103
## Zenarchopterus_gilli 0.99844 -0.05578 0.0867 0.93207
## Zoramia_leptacanthus 0.98711 0.16003 0.0146 1.00000
## Zoramia_viridiventer 0.51118 -0.85947 0.0923 0.31169
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000fds_efp <- p.adjust.envfit(fds_ef)## Adjustment of significance by bonferroni methodfds_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## Abudefduf_lorenzi -0.23604 -0.97174 0.0149 1
## Abudefduf_septemfasciatus 0.99528 0.09709 0.0169 1
## Abudefduf_sexfasciatus -0.23604 -0.97174 0.0149 1
## Acanthurus_lineatus 0.63016 0.77647 0.0213 1
## Acanthurus_nigricauda 0.97616 0.21705 0.0556 1
## Acanthurus_sp 0.90503 -0.42535 0.0199 1
## Acanthurus_xanthopterus 0.75012 0.66130 0.1882 1
## Acentrogobius_janthinopterus -0.83821 0.54535 0.3818 1
## Amblyeleotris_gymnocephala 0.95123 0.30849 0.0155 1
## Amblyglyphidodon_curacao 0.60738 -0.79441 0.0382 1
## Amblygobius_buanensis 0.85471 0.51911 0.3321 1
## Amblygobius_decussatus 0.25880 -0.96593 0.0856 1
## Amblygobius_esakiae 0.90503 -0.42535 0.0199 1
## Amblygobius_linki 0.66607 0.74589 0.0187 1
## Amblygobius_phalaena 0.97143 0.23734 0.0315 1
## Amphiprion_clarkii 0.96121 -0.27583 0.0202 1
## Ancistrogobius_dipus 0.71133 0.70286 0.0134 1
## Apogonichthyoides_melas 0.71133 0.70286 0.0134 1
## Arcygobius_baliurus 0.81541 0.57889 0.0155 1
## Arothron_reticularis 0.74787 0.66385 0.0129 1
## Asterropteryx_semipunctata 0.99445 0.10516 0.0539 1
## Asterropteryx_sp 0.66607 0.74589 0.0187 1
## Atherinomorus_lacunosus 0.97434 0.22506 0.0160 1
## Atule_mate 0.63016 0.77647 0.0213 1
## Balistoides_viridescens 0.89130 0.45342 0.1281 1
## Bolbometopon_muricatum 0.36614 -0.93056 0.0885 1
## Caesio_caerulaurea 0.71464 0.69950 0.0341 1
## Caesio_cuning 0.48562 -0.87417 0.1028 1
## Caesio_teres 0.95123 0.30849 0.0155 1
## Cantherhines_dumerilii 0.96121 -0.27583 0.0202 1
## Canthigaster_bennetti 0.96121 -0.27583 0.0202 1
## Canthigaster_solandri 0.99528 0.09709 0.0169 1
## Caranx_ignobilis 0.98711 0.16003 0.0146 1
## Caranx_melampygus 0.38822 -0.92157 0.0053 1
## Caranx_papuensis 0.95123 0.30849 0.0155 1
## Caranx_sexfasciatus 0.80521 0.59299 0.0939 1
## Cephalopholis_argus -0.44261 -0.89672 0.2031 1
## Cephalopholis_boenak 0.93543 -0.35350 0.0421 1
## Chaetodon_auriga 0.96905 -0.24688 0.2867 1
## Chaetodon_bennetti 0.90821 0.41852 0.0416 1
## Chaetodon_ephippium 0.89898 -0.43800 0.2449 1
## Chaetodon_kleinii 0.92236 0.38633 0.0607 1
## Chaetodon_lunula 0.87881 0.47717 0.1594 1
## Chaetodon_lunulatus 0.75306 -0.65795 0.1443 1
## Chaetodon_melannotus 0.71741 0.69665 0.0193 1
## Chaetodon_ocellicaudus 0.98711 0.16003 0.0146 1
## Chaetodon_octofasciatus 0.93543 -0.35350 0.0421 1
## Chaetodon_rafflesii 0.98855 0.15093 0.0850 1
## Chaetodon_semeion 0.95137 0.30805 0.0401 1
## Chaetodon_trifascialis 0.96121 -0.27583 0.0202 1
## Chaetodon_ulietensis 0.51780 -0.85550 0.1000 1
## Chaetodon_vagabundus 0.97243 -0.23319 0.2893 1
## Chaetodontoplus_poliourus 0.96121 -0.27583 0.0202 1
## Cheilinus_fasciatus 0.98894 0.14830 0.0648 1
## Cheilinus_trilobatus 0.63016 0.77647 0.0213 1
## Cheilinus_undulatus 0.25413 -0.96717 0.0745 1
## Cheilodipterus_artus 0.21333 -0.97698 0.0100 1
## Cheilodipterus_isostigma 0.27334 -0.96192 0.0694 1
## Cheilodipterus_quinquelineatus 0.90937 -0.41598 0.2468 1
## Cheilodipterus_singapurensis 0.75461 0.65618 0.0320 1
## Chlorurus_bleekeri 0.51454 -0.85747 0.1093 1
## Chlorurus_microrhinos 0.99678 -0.08023 0.0361 1
## Chlorurus_spilurus 0.98855 0.15093 0.0850 1
## Choerodon_anchorago 0.99634 -0.08545 0.3920 1
## Chromis_viridis 0.42128 -0.90693 0.0765 1
## Chrysiptera_biocellata 0.93032 0.36674 0.0338 1
## Chrysiptera_oxycephala 0.35038 -0.93661 0.0784 1
## Corythoichthys_ocellatus 0.96121 -0.27583 0.0202 1
## Cryptocentrus_caeruleomaculatus 0.67552 -0.73734 0.0692 1
## Cryptocentrus_cyanospilotus 0.20804 0.97812 0.0024 1
## Cryptocentrus_leptocephalus 0.91608 0.40099 0.0314 1
## Cryptocentrus_strigilliceps 0.51009 -0.86012 0.0988 1
## Ctenochaetus_striatus 0.16567 -0.98618 0.0700 1
## Ctenogobiops_pomastictus 0.71133 0.70286 0.0134 1
## Cymbacephalus_beauforti 0.98711 0.16003 0.0146 1
## Dascyllus_aruanus 0.59232 -0.80570 0.0848 1
## Dascyllus_trimaculatus 0.96121 -0.27583 0.0202 1
## Diplogrammus_goramensis 0.87290 0.48789 0.0290 1
## Diproctacanthus_xanthurus 0.90821 0.41852 0.0416 1
## Dischistodus_chrysopoecilus 0.88448 0.46658 0.0280 1
## Dischistodus_perspicillatus 0.80273 -0.59634 0.1279 1
## Doboatherina_duodecimalis 0.28051 -0.95985 0.1295 1
## Eleotris_fusca -0.30762 0.95151 0.3599 1
## Epibulus_brevis 0.60942 -0.79285 0.1286 1
## Epinephelus_coeruleopunctatus 0.73539 0.67765 0.0358 1
## Epinephelus_merra 0.53712 -0.84351 0.1002 1
## Epinephelus_sp 0.73008 0.68336 0.0125 1
## Eviota_atriventris 0.96020 0.27931 0.0527 1
## Eviota_bifasciata 0.82173 -0.56988 0.1761 1
## Eviota_fallax 0.73397 -0.67919 0.1533 1
## Eviota_lachdeberei 0.85291 0.52206 0.0721 1
## Eviota_maculosa 0.13342 -0.99106 0.0988 1
## Eviota_sigillata 0.83462 0.55083 0.0361 1
## Eviota_sp 0.66607 0.74589 0.0187 1
## Eviota_storthynx 0.84717 0.53133 0.0539 1
## Exyrias_belissimus 0.91233 -0.40947 0.1514 1
## Exyrias_puntang -0.04985 0.99876 0.2868 1
## Favonigobius_reichei 0.91608 0.40099 0.0314 1
## Fibramia_lateralis 0.04555 -0.99896 0.0231 1
## Fibramia_thermalis 0.66629 -0.74569 0.0970 1
## Fusigobius_signipinnis 0.99878 0.04934 0.0549 1
## Gerres_erythrourus 0.98711 0.16003 0.0146 1
## Gerres_oyena 0.99183 0.12758 0.0330 1
## Gladiogobius_ensifer 0.13342 -0.99106 0.0988 1
## Gnathanodon_speciosus 0.49542 0.86865 0.0130 1
## Gobiodon_okinawae 0.63016 0.77647 0.0213 1
## Gymnothorax_pictus 0.93032 0.36674 0.0338 1
## Halichoeres_chloropterus 0.77484 -0.63216 0.0536 1
## Halichoeres_leucurus 0.98247 0.18643 0.0862 1
## Halichoeres_marginatus 0.98711 0.16003 0.0146 1
## Halichoeres_melanurus 0.18557 -0.98263 0.0488 1
## Halichoeres_papilionaceus 0.80966 0.58690 0.0555 1
## Halichoeres_trimaculatus 0.99183 0.12758 0.0330 1
## Hemiglyphidodon_plagiometopon 0.45124 -0.89240 0.1069 1
## Hemigymnus_melapterus 0.99678 -0.08023 0.0361 1
## Heniochus_chrysostomus 0.93765 0.34758 0.0595 1
## Heniochus_monoceros 0.84717 0.53133 0.0539 1
## Herklotsichthys_quadrimaculatus 0.98711 0.16003 0.0146 1
## Hipposcarus_longiceps 0.44740 -0.89434 0.1113 1
## Istigobius_decoratus 0.98711 0.16003 0.0146 1
## Koumansetta_rainfordi 0.96121 -0.27583 0.0202 1
## Kyphosus_cinerascens -0.21315 -0.97702 0.0174 1
## Lethrinus_erythropterus 0.88112 0.47288 0.0682 1
## Lethrinus_harak 0.83503 0.55020 0.1182 1
## Lethrinus_obsoletus 0.71133 0.70286 0.0134 1
## Lethrinus_olivaceus 0.71133 0.70286 0.0134 1
## Lutjanus_argentimaculatus 0.42547 0.90497 0.1341 1
## Lutjanus_biguttatus -0.25335 -0.96737 0.0169 1
## Lutjanus_bohar 0.95137 0.30805 0.0401 1
## Lutjanus_decussatus 0.71133 0.70286 0.0134 1
## Lutjanus_ehrenbergii 0.78771 0.61604 0.0911 1
## Lutjanus_fulviflamma 0.87488 0.48435 0.0859 1
## Lutjanus_fulvus 0.55443 0.83223 0.3632 1
## Lutjanus_gibbus 0.91822 0.39606 0.0762 1
## Lutjanus_monostigma 0.89152 0.45297 0.0285 1
## Lutjanus_russellii 0.66607 0.74589 0.0187 1
## Macrodontogobius_wilburi 0.75306 -0.65795 0.1443 1
## Megalops_cyprinoides -0.17801 0.98403 0.5178 1
## Meiacanthus_ditrema 0.90503 -0.42535 0.0199 1
## Meiacanthus_grammistes 0.93543 -0.35350 0.0421 1
## Monodactylus_argenteus 0.68024 0.73299 0.0316 1
## Monotaxis_grandoculis -0.02102 -0.99978 0.0121 1
## Mugilogobius_cavifrons -0.60174 0.79870 0.2146 1
## Mulloidichthys_flavolineatus 0.98711 0.16003 0.0146 1
## Myripristis_adusta 0.81258 0.58285 0.1256 1
## Myripristis_sp 0.81541 0.57889 0.0155 1
## Myripristis_violacea 0.96121 -0.27583 0.0202 1
## Naso_brevirostris 0.98495 0.17286 0.0776 1
## Naso_vlamingii 0.87638 0.48162 0.0571 1
## Nectamia_viria 0.71741 0.69665 0.0193 1
## Neoglyphidodon_melas -0.44261 -0.89672 0.2031 1
## Neoniphon_argenteus 0.77492 0.63206 0.0508 1
## Neoniphon_opercularis -0.44261 -0.89672 0.2031 1
## Neoniphon_sammara 0.95549 0.29501 0.0951 1
## Neopomacentrus_nemurus 0.25265 -0.96756 0.0635 1
## Omobranchus_obliquus 0.60663 0.79498 0.0333 1
## Oplopomops_diacanthus 0.98711 0.16003 0.0146 1
## Oxycheilinus_celebicus 0.22026 -0.97544 0.0157 1
## Parapercis_cylindrica 0.98711 0.16003 0.0146 1
## Parioglossus_formosus -0.10981 0.99395 0.2528 1
## Parioglossus_philippinus 0.75917 0.65090 0.0543 1
## Parioglossus_sp 0.98512 0.17185 0.0366 1
## Parupeneus_barberinus 0.96514 0.26174 0.1647 1
## Parupeneus_multifasciatus 0.88390 -0.46768 0.2084 1
## Pentapodus_trivittatus 0.87597 -0.48237 0.2074 1
## Periophthalmus_argentilineatus 0.99528 0.09709 0.0169 1
## Pervagor_janthinosoma 0.63016 0.77647 0.0213 1
## Pervagor_nigrolineatus 0.37832 -0.92567 0.0786 1
## Petroscirtes_breviceps 0.99810 0.06157 0.1038 1
## Platax_orbicularis 0.76468 0.64441 0.0303 1
## Platax_pinnatus 0.95123 0.30849 0.0155 1
## Platax_sp 0.73008 0.68336 0.0125 1
## Plectorhinchus_albovittatus 0.66607 0.74589 0.0187 1
## Plectorhinchus_chaetodonoides 0.13342 -0.99106 0.0988 1
## Plectorhinchus_gibbosus 0.98711 0.16003 0.0146 1
## Plectropomus_leopardus 0.96121 -0.27583 0.0202 1
## Pomacanthus_sexstriatus 0.86223 0.50652 0.0349 1
## Pomacentrus_adelus 0.99528 0.09709 0.0169 1
## Pomacentrus_amboinensis 0.96121 -0.27583 0.0202 1
## Pomacentrus_burroughi 0.84161 -0.54008 0.1823 1
## Pomacentrus_grammorhynchus 0.98711 0.16003 0.0146 1
## Pomacentrus_nigromanus -0.15413 -0.98805 0.0249 1
## Pomacentrus_pavo 0.96121 -0.27583 0.0202 1
## Pomacentrus_simsiang 0.92787 -0.37291 0.2872 1
## Pomacentrus_sp -0.32954 -0.94414 0.0638 1
## Pomacentrus_taeniometopon 0.66607 0.74589 0.0187 1
## Pseudobalistes_flavimarginatus 0.95774 0.28762 0.1323 1
## Pseudochromis_fuscus 0.96121 -0.27583 0.0202 1
## Ptereleotris_brachyptera 1.00000 -0.00178 0.0370 1
## Ptereleotris_evides 0.96121 -0.27583 0.0202 1
## Pterocaesio_tile 0.71133 0.70286 0.0134 1
## Pterocaesio_trilineata 0.71741 0.69665 0.0193 1
## Pterois_volitans 0.95123 0.30849 0.0155 1
## Rastrelliger_kanagurta 0.31497 -0.94910 0.0673 1
## Rhabdamia_gracilis 0.83306 0.55318 0.0727 1
## Rhinecanthus_aculeatus 0.88114 0.47286 0.0607 1
## Salarias_segmentatus 0.90429 0.42691 0.1687 1
## Sargocentron_diadema 0.67154 0.74097 0.0425 1
## Sargocentron_spiniferum 0.81541 0.57889 0.0155 1
## Saurida_gracilis 0.63016 0.77647 0.0213 1
## Scarus_dimidiatus 0.98855 0.15093 0.0850 1
## Scarus_flavipectoralis 0.90821 0.41852 0.0416 1
## Scarus_ghobban 0.98512 0.17185 0.0366 1
## Scarus_hypselopterus 0.63016 0.77647 0.0213 1
## Scarus_oviceps 0.90503 -0.42535 0.0199 1
## Scarus_psittacus 0.98114 0.19329 0.1072 1
## Scarus_quoyi 0.96121 -0.27583 0.0202 1
## Scarus_rivulatus 0.25880 -0.96593 0.0856 1
## Scatophagus_argus 0.74787 0.66385 0.0129 1
## Scolopsis_ciliata 0.73160 -0.68174 0.1706 1
## Scolopsis_lineata 0.91608 0.40099 0.0314 1
## Scolopsis_margaritifera 0.35816 -0.93366 0.0807 1
## Scolopsis_trilineata 0.74721 0.66459 0.0530 1
## Siganus_doliatus 0.36614 -0.93056 0.0885 1
## Siganus_fuscescens 0.77735 0.62907 0.0530 1
## Siganus_lineatus 0.58175 0.81337 0.2995 1
## Siganus_puellus 0.35553 -0.93466 0.0998 1
## Siganus_punctatissimus 0.96121 -0.27583 0.0202 1
## Siganus_punctatus 0.96121 -0.27583 0.0202 1
## Signigobius_biocellatus 0.63016 0.77647 0.0213 1
## Silhouettea_sp 0.20804 0.97812 0.0024 1
## Sphaeramia_nematoptera 0.71648 -0.69761 0.1362 1
## Sphaeramia_orbicularis 0.63963 -0.76869 0.1605 1
## Sphyraena_barracuda 0.83901 0.54412 0.0921 1
## Sphyraena_obtusata 0.80339 0.59545 0.0117 1
## Sphyraena_qenie 0.81541 0.57889 0.0155 1
## Stegastes_nigricans 0.98711 0.16003 0.0146 1
## Stegastes_punctatus 0.80694 0.59063 0.0365 1
## Stethojulis_strigiventer 0.95267 0.30400 0.0516 1
## Strongylura_incisa 0.71192 0.70226 0.0382 1
## Synodus_variegatus 0.31497 -0.94910 0.0673 1
## Taeniamia_zosterophora 0.35696 -0.93412 0.0896 1
## Taeniurops_meyeni 0.71133 0.70286 0.0134 1
## Toxotes_jaculatrix 0.87121 0.49091 0.1170 1
## Tylosurus_punctulatus 0.88859 0.45870 0.0283 1
## Upeneus_taeniopterus 0.81541 0.57889 0.0155 1
## Valenciennea_muralis 0.83345 0.55260 0.0488 1
## Valenciennea_parva 0.95123 0.30849 0.0155 1
## Valenciennea_randalli 0.95123 0.30849 0.0155 1
## Zanclus_cornutus 0.99878 0.04934 0.0549 1
## Zebrasoma_scopas 0.96121 -0.27583 0.0202 1
## Zebrasoma_velifer 0.78688 -0.61711 0.1816 1
## Zenarchopterus_dispar 0.98230 -0.18729 0.2631 1
## Zenarchopterus_gilli 0.99844 -0.05578 0.0867 1
## Zoramia_leptacanthus 0.98711 0.16003 0.0146 1
## Zoramia_viridiventer 0.51118 -0.85947 0.0923 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000Trait mantel tests
We used mantel tests to determine significance between the trait and environmental distance matrices.
### Environmental
# All sites
enve_dist <- dist(scaled_env[-c(9,16,18,20),c(2)], method = "euclidean")
fdea_mant <- mantel(fde_dist, enve_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
fdea_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fde_dist, ydis = enve_dist, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.8057
## Significance: 0.016
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.695 0.746 0.782 0.820
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envems_dist <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2)], method = "euclidean")
fdems_mant <- mantel(fdems_dist, envems_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
fdems_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdems_dist, ydis = envems_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.8214
## Significance: 0.006
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.692 0.740 0.779 0.809
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
enveom_dist <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(2:4)], method = "euclidean")
fdeom_mant <- mantel(fdeom_dist, enveom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
fdeom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdeom_dist, ydis = enveom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15, 19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1356
## Significance: 0.15
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.187 0.251 0.315 0.413
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
enveso_dist <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2)], method = "euclidean")
fdeso_mant <- mantel(fdeso_dist, enveso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
fdeso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdeso_dist, ydis = enveso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17, 19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6976
## Significance: 0.018
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.462 0.555 0.643 0.715
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes
envs_dist <- dist(scaled_env[c(1:2,4,5,12,17,21:22),c(1:15)], method = "euclidean")
fds_mant <- mantel(fds_dist, envs_dist, method = "spearman", permutations = 999, na.rm = TRUE)
fds_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fds_dist, ydis = envs_dist, method = "spearman", permutations = 999, na.rm = TRUE)
##
## Mantel statistic r: 0.03996
## Significance: 0.396
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.248 0.331 0.387 0.475
## Permutation: free
## Number of permutations: 999### Biogeographic
# All sites
envb_dist_la <- dist(scaled_env[-c(8,20),c(15)], method = "euclidean")
fdba_mant_la <- mantel(fdb_dist, envb_dist_la, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
fdba_mant_la##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdb_dist, ydis = envb_dist_la, method = "spearman", permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1117
## Significance: 0.008
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0439 0.0696 0.0907 0.1083
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:15)], method = "euclidean")
fdbms_mant <- mantel(fdbms_dist, envbms_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
fdbms_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdbms_dist, ydis = envbms_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2809
## Significance: 0.289
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.397 0.457 0.502 0.554
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(5:15)], method = "euclidean")
fdbom_mant <- mantel(fdbom_dist, envbom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
fdbom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdbom_dist, ydis = envbom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:7, 9:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1645
## Significance: 0.598
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.472 0.570 0.617 0.661
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:15)], method = "euclidean")
fdbso_mant <- mantel(fdbso_dist, envbso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
fdbso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = fdbso_dist, ydis = envbso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1656
## Significance: 0.328
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.237 0.274 0.293 0.324
## Blocks: strata
## Permutation: free
## Number of permutations: 999Plot trait NMDS and envfit results
Includes a plot of correlated environmental variables
fd_NMDS_data.scores <- as.data.frame(scores(fd_NMDS))
fd_NMDS_data.scores$Stratification <- env[-20,19]
fd_NMDS_data.scores$Lakes <- env[-20,1]
fd_NMDS_data.scores$Stratification <- factor(fd_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))
fde_ef_coord_cont <- as.data.frame(scores(fde_ef, "vectors")) * ordiArrowMul(fde_ef)
fde_row_names <- c("S")
# Assign the new row names to the data frame
fde_ef_coord_cont <- data.frame(row.names = fde_row_names, fde_ef_coord_cont)
# fdb_ef_coord_cont <- as.data.frame(scores(fdb_ef, "vectors")) * ordiArrowMul(fdb_ef)
# fdb_row_names <- c("minD")
# # Assign the new row names to the data frame
# fdb_ef_coord_cont <- data.frame(row.names = fdb_row_names, fdb_ef_coord_cont)
fd_ef_plot <- ggplot(data = fd_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification), level = 0.50) +
geom_point(data = fd_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) +
geom_text_repel(data = fd_NMDS_data.scores, label = fd_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = fde_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD661D") +
geom_text(data = fde_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#CD661D", label = row.names(fde_ef_coord_cont), size = 7) +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = fdb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#698B22") +
# geom_text(data = fdb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
# color = "#698B22", label = row.names(fdb_ef_coord_cont), size = 7) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = 0.19, y = -0.3, size = 6,
# label = paste("Stress: ", round(fd_NMDS$stress, digits = 2))) +
labs(color = "Stratification", tag = "A")
fd_ef_plot <- fd_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
fd_ef_plot## Warning: ggrepel: 14 unlabeled data points (too many overlaps). Consider
## increasing max.overlaps
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/fd_ef_plot.png", fd_ef_plot, width = 8.25, height = 4.13, units = "in")## Warning: ggrepel: 14 unlabeled data points (too many overlaps). Consider
## increasing max.overlapsBoxplot of trait intradissimilarity heterogeneity
The dissimilarity between sites that share the same stratification.
fd_bd_dist <- stratification_fd_bd$distances
fd_bd_dist <- as.data.frame(fd_bd_dist)
fd_bd_dist$X <- row.names(fd_bd_dist)
fd_bd_dist_env <- merge(fd_bd_dist, env[-20,], by = "X", sort = F)
fd_bd_dist_env_plot <- ggplot(fd_bd_dist_env, aes(x = Stratification, y = fd_bd_dist,
color = Stratification, fill = Stratification)) +
geom_violin(alpha = 0.75, draw_quantiles = c(0.25, 0.5, 0.75)) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
scale_fill_viridis(alpha = 0.1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
guides(fill = "none", color = "none") +
geom_jitter(shape = 21,
size = 4,
alpha = 0.75,
width = 0.1) +
theme_bw() +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
plot.background = element_blank(),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_blank(), axis.text = element_text(size = 22, color = "black"),
axis.line = element_line(color = "black")) +
ylab("Distance to Centroid") +
labs(color = "Stratification", tag = "A")
fd_bd_dist_env_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/fd_bd_dist_env_plot.png", fd_bd_dist_env_plot, width = 8.25, height = 4.13, units = "in")Phylogeny dissimilarity distances
We use unifrac to calculate distances in the phylogeny.
### Regular
pd_dist <- unifrac(presabs_lake[-20,], stree)
# Mixed and stratified lakes
pdms_dist <- unifrac(presabs_lake[c(1:6,8,10,12:15,17,21:23),], stree)
# Ocean sites and mixed lakes
pdom_dist <- unifrac(presabs_lake[c(3,6:11,13:16,18:19,23),], stree)
# Stratified lakes and ocean sites
pdso_dist <- unifrac(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], stree)
# Stratified lakes
pds_dist <- unifrac(presabs_lake[c(1:2,4,5,12,17,21:22),], stree)
### Environmental
pde_dist <- unifrac(presabs_lake[-c(9,16,18,20),], etree)
# Mixed and stratified lakes
pdems_dist <- unifrac(presabs_lake[c(1:6,8,10,12:15,17,21:23),], etree)
# Ocean sites and mixed lakes
pdeom_dist <- unifrac(presabs_lake[c(3,6:8,10:11,13:15,19,23),], etree)
# Stratified lakes and ocean sites
pdeso_dist <- unifrac(presabs_lake[c(1:2,4,5,7,11:12,17,19,21:22),], etree)
### Biogeographic
pdb_dist <- unifrac(presabs_lake[-c(8,20),], btree)
# Mixed and stratified lakes
pdbms_dist <- unifrac(presabs_lake[c(1:6,10,12:15,17,21:23),], btree)
# Ocean sites and mixed lakes
pdbom_dist <- unifrac(presabs_lake[c(3,6:7,9:11,13:16,18:19,23),], btree)
# Stratified lakes and ocean sites
pdbso_dist <- unifrac(presabs_lake[c(1:2,4,5,7,9,11:12,16:19,21:22),], btree)Phylogeny NMDS
To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.
### Regular
pd_NMDS <- metaMDS(pd_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08003946
## Run 1 stress 0.080207
## ... Procrustes: rmse 0.01864101 max resid 0.06472255
## Run 2 stress 0.08020699
## ... Procrustes: rmse 0.01862772 max resid 0.06464475
## Run 3 stress 0.07977106
## ... New best solution
## ... Procrustes: rmse 0.008968747 max resid 0.03274471
## Run 4 stress 0.08080953
## Run 5 stress 0.0941542
## Run 6 stress 0.08080953
## Run 7 stress 0.09254295
## Run 8 stress 0.08003946
## ... Procrustes: rmse 0.008968262 max resid 0.03268164
## Run 9 stress 0.09330291
## Run 10 stress 0.080207
## ... Procrustes: rmse 0.01510078 max resid 0.06265161
## Run 11 stress 0.09219216
## Run 12 stress 0.1109386
## Run 13 stress 0.08020699
## ... Procrustes: rmse 0.01507881 max resid 0.0625389
## Run 14 stress 0.08003946
## ... Procrustes: rmse 0.008968367 max resid 0.0326835
## Run 15 stress 0.08080962
## Run 16 stress 0.07977107
## ... Procrustes: rmse 4.886407e-05 max resid 0.0001653153
## ... Similar to previous best
## Run 17 stress 0.08020699
## ... Procrustes: rmse 0.01508662 max resid 0.06257926
## Run 18 stress 0.08003946
## ... Procrustes: rmse 0.008967691 max resid 0.03267986
## Run 19 stress 0.08080954
## Run 20 stress 0.08020699
## ... Procrustes: rmse 0.01508849 max resid 0.06258905
## Run 21 stress 0.08020703
## ... Procrustes: rmse 0.01512965 max resid 0.06280002
## Run 22 stress 0.09317099
## Run 23 stress 0.09415411
## Run 24 stress 0.09280579
## Run 25 stress 0.09443024
## Run 26 stress 0.08003947
## ... Procrustes: rmse 0.00896664 max resid 0.032678
## Run 27 stress 0.09219221
## Run 28 stress 0.07977108
## ... Procrustes: rmse 1.750468e-05 max resid 3.312944e-05
## ... Similar to previous best
## Run 29 stress 0.09248711
## Run 30 stress 0.07977106
## ... Procrustes: rmse 3.271619e-05 max resid 0.0001254041
## ... Similar to previous best
## Run 31 stress 0.09415419
## Run 32 stress 0.1050389
## Run 33 stress 0.08003946
## ... Procrustes: rmse 0.008967113 max resid 0.03268439
## Run 34 stress 0.0931708
## Run 35 stress 0.080207
## ... Procrustes: rmse 0.01509967 max resid 0.0626545
## Run 36 stress 0.1050391
## Run 37 stress 0.08080963
## Run 38 stress 0.08003952
## ... Procrustes: rmse 0.008967197 max resid 0.03267909
## Run 39 stress 0.08080958
## Run 40 stress 0.08080951
## Run 41 stress 0.08020699
## ... Procrustes: rmse 0.01509575 max resid 0.06262582
## Run 42 stress 0.07977105
## ... New best solution
## ... Procrustes: rmse 8.567214e-06 max resid 2.115262e-05
## ... Similar to previous best
## Run 43 stress 0.09254291
## Run 44 stress 0.08080953
## Run 45 stress 0.08080954
## Run 46 stress 0.105413
## Run 47 stress 0.08020699
## ... Procrustes: rmse 0.0150742 max resid 0.06251318
## Run 48 stress 0.08003946
## ... Procrustes: rmse 0.008968311 max resid 0.0326817
## Run 49 stress 0.09248698
## Run 50 stress 0.09250233
## Run 51 stress 0.08020699
## ... Procrustes: rmse 0.01508805 max resid 0.06258526
## Run 52 stress 0.07977107
## ... Procrustes: rmse 4.301136e-05 max resid 0.0001524536
## ... Similar to previous best
## Run 53 stress 0.08003947
## ... Procrustes: rmse 0.008968821 max resid 0.03268425
## Run 54 stress 0.08080951
## Run 55 stress 0.07977106
## ... Procrustes: rmse 2.037219e-05 max resid 4.773976e-05
## ... Similar to previous best
## Run 56 stress 0.09326309
## Run 57 stress 0.09219218
## Run 58 stress 0.09358442
## Run 59 stress 0.08080952
## Run 60 stress 0.0935843
## Run 61 stress 0.09415415
## Run 62 stress 0.09358426
## Run 63 stress 0.08003947
## ... Procrustes: rmse 0.008968787 max resid 0.03268365
## Run 64 stress 0.080207
## ... Procrustes: rmse 0.01509926 max resid 0.06264471
## Run 65 stress 0.09254292
## Run 66 stress 0.08020701
## ... Procrustes: rmse 0.01511545 max resid 0.06273289
## Run 67 stress 0.07977106
## ... Procrustes: rmse 1.350475e-05 max resid 4.779259e-05
## ... Similar to previous best
## Run 68 stress 0.080207
## ... Procrustes: rmse 0.01510138 max resid 0.06265582
## Run 69 stress 0.07977107
## ... Procrustes: rmse 4.276061e-05 max resid 0.0001007637
## ... Similar to previous best
## Run 70 stress 0.09317079
## Run 71 stress 0.09443015
## Run 72 stress 0.08080956
## Run 73 stress 0.08003946
## ... Procrustes: rmse 0.00896838 max resid 0.03268238
## Run 74 stress 0.08020699
## ... Procrustes: rmse 0.01508821 max resid 0.06258516
## Run 75 stress 0.08020699
## ... Procrustes: rmse 0.01508046 max resid 0.06254596
## Run 76 stress 0.07977106
## ... Procrustes: rmse 1.433603e-05 max resid 5.702467e-05
## ... Similar to previous best
## Run 77 stress 0.08020699
## ... Procrustes: rmse 0.01509451 max resid 0.06261901
## Run 78 stress 0.08080961
## Run 79 stress 0.080207
## ... Procrustes: rmse 0.01509435 max resid 0.06261803
## Run 80 stress 0.08003946
## ... Procrustes: rmse 0.008968386 max resid 0.0326829
## Run 81 stress 0.09415416
## Run 82 stress 0.08080953
## Run 83 stress 0.09280575
## Run 84 stress 0.09358427
## Run 85 stress 0.08003946
## ... Procrustes: rmse 0.008968391 max resid 0.03268232
## Run 86 stress 0.07977105
## ... New best solution
## ... Procrustes: rmse 5.269817e-06 max resid 1.770026e-05
## ... Similar to previous best
## Run 87 stress 0.09219215
## Run 88 stress 0.09254299
## Run 89 stress 0.09219212
## Run 90 stress 0.09225276
## Run 91 stress 0.08020699
## ... Procrustes: rmse 0.01508086 max resid 0.06254463
## Run 92 stress 0.09392287
## Run 93 stress 0.1051056
## Run 94 stress 0.09423228
## Run 95 stress 0.09392285
## Run 96 stress 0.08080962
## Run 97 stress 0.09443011
## Run 98 stress 0.07977106
## ... Procrustes: rmse 4.699575e-06 max resid 1.301829e-05
## ... Similar to previous best
## Run 99 stress 0.080207
## ... Procrustes: rmse 0.01505871 max resid 0.0624346
## Run 100 stress 0.09423224
## Run 101 stress 0.08080954
## Run 102 stress 0.07977108
## ... Procrustes: rmse 6.13499e-05 max resid 0.0001708798
## ... Similar to previous best
## Run 103 stress 0.08080952
## Run 104 stress 0.08003948
## ... Procrustes: rmse 0.008969167 max resid 0.03268298
## Run 105 stress 0.09254293
## Run 106 stress 0.08020699
## ... Procrustes: rmse 0.0150962 max resid 0.06262298
## Run 107 stress 0.08020699
## ... Procrustes: rmse 0.0150866 max resid 0.0625745
## Run 108 stress 0.09392285
## Run 109 stress 0.08080957
## Run 110 stress 0.09326304
## Run 111 stress 0.09317083
## Run 112 stress 0.08020699
## ... Procrustes: rmse 0.01509379 max resid 0.06261056
## Run 113 stress 0.08020699
## ... Procrustes: rmse 0.01508607 max resid 0.06257085
## Run 114 stress 0.1046388
## Run 115 stress 0.0936192
## Run 116 stress 0.08080951
## Run 117 stress 0.08003946
## ... Procrustes: rmse 0.008968648 max resid 0.03268108
## Run 118 stress 0.07977106
## ... Procrustes: rmse 1.093668e-05 max resid 4.152323e-05
## ... Similar to previous best
## Run 119 stress 0.07977106
## ... Procrustes: rmse 1.504138e-05 max resid 4.370252e-05
## ... Similar to previous best
## Run 120 stress 0.09361921
## Run 121 stress 0.08003946
## ... Procrustes: rmse 0.00896834 max resid 0.03268125
## Run 122 stress 0.08003946
## ... Procrustes: rmse 0.008968954 max resid 0.03268258
## Run 123 stress 0.09358437
## Run 124 stress 0.09415412
## Run 125 stress 0.09248698
## Run 126 stress 0.08080953
## Run 127 stress 0.09248706
## Run 128 stress 0.07977107
## ... Procrustes: rmse 4.249762e-05 max resid 0.0001561717
## ... Similar to previous best
## Run 129 stress 0.1058009
## Run 130 stress 0.080207
## ... Procrustes: rmse 0.01509953 max resid 0.06264199
## Run 131 stress 0.08020701
## ... Procrustes: rmse 0.01510642 max resid 0.06268359
## Run 132 stress 0.08020699
## ... Procrustes: rmse 0.01509512 max resid 0.06261872
## Run 133 stress 0.0935846
## Run 134 stress 0.07977109
## ... Procrustes: rmse 7.114301e-05 max resid 0.0002587311
## ... Similar to previous best
## Run 135 stress 0.09219212
## Run 136 stress 0.08080952
## Run 137 stress 0.07977105
## ... Procrustes: rmse 5.046287e-06 max resid 1.242569e-05
## ... Similar to previous best
## Run 138 stress 0.09280599
## Run 139 stress 0.07977105
## ... Procrustes: rmse 5.330631e-06 max resid 1.700095e-05
## ... Similar to previous best
## Run 140 stress 0.08080954
## Run 141 stress 0.09219211
## Run 142 stress 0.08003946
## ... Procrustes: rmse 0.008968707 max resid 0.03268214
## Run 143 stress 0.07977105
## ... Procrustes: rmse 8.872442e-06 max resid 2.638477e-05
## ... Similar to previous best
## Run 144 stress 0.0941542
## Run 145 stress 0.08020702
## ... Procrustes: rmse 0.01512134 max resid 0.06275252
## Run 146 stress 0.07977106
## ... Procrustes: rmse 1.706696e-05 max resid 6.243868e-05
## ... Similar to previous best
## Run 147 stress 0.09423223
## Run 148 stress 0.08020699
## ... Procrustes: rmse 0.01509649 max resid 0.06262623
## Run 149 stress 0.09423224
## Run 150 stress 0.09317079
## Run 151 stress 0.09415419
## Run 152 stress 0.08003948
## ... Procrustes: rmse 0.008969164 max resid 0.03268289
## Run 153 stress 0.08020701
## ... Procrustes: rmse 0.01511203 max resid 0.06270764
## Run 154 stress 0.09443013
## Run 155 stress 0.08003947
## ... Procrustes: rmse 0.008967023 max resid 0.03268158
## Run 156 stress 0.09443016
## Run 157 stress 0.08003946
## ... Procrustes: rmse 0.008968257 max resid 0.03268092
## Run 158 stress 0.08020699
## ... Procrustes: rmse 0.01509141 max resid 0.06259945
## Run 159 stress 0.09423226
## Run 160 stress 0.08003947
## ... Procrustes: rmse 0.008968973 max resid 0.03268282
## Run 161 stress 0.09415411
## Run 162 stress 0.08003946
## ... Procrustes: rmse 0.008968764 max resid 0.03268318
## Run 163 stress 0.07977108
## ... Procrustes: rmse 5.166575e-05 max resid 0.0001543019
## ... Similar to previous best
## Run 164 stress 0.07977107
## ... Procrustes: rmse 3.256416e-05 max resid 0.000116869
## ... Similar to previous best
## Run 165 stress 0.09219213
## Run 166 stress 0.1086323
## Run 167 stress 0.09358471
## Run 168 stress 0.09250215
## Run 169 stress 0.09360579
## Run 170 stress 0.09280571
## Run 171 stress 0.08003947
## ... Procrustes: rmse 0.008968605 max resid 0.03268143
## Run 172 stress 0.07977105
## ... Procrustes: rmse 7.083058e-06 max resid 2.437608e-05
## ... Similar to previous best
## Run 173 stress 0.09225269
## Run 174 stress 0.09415411
## Run 175 stress 0.08003946
## ... Procrustes: rmse 0.008968769 max resid 0.03268238
## Run 176 stress 0.0922528
## Run 177 stress 0.09317082
## Run 178 stress 0.08020699
## ... Procrustes: rmse 0.0150933 max resid 0.06260946
## Run 179 stress 0.09280579
## Run 180 stress 0.08020702
## ... Procrustes: rmse 0.01512555 max resid 0.06277291
## Run 181 stress 0.09317079
## Run 182 stress 0.09415411
## Run 183 stress 0.08020699
## ... Procrustes: rmse 0.01509345 max resid 0.06260995
## Run 184 stress 0.08003946
## ... Procrustes: rmse 0.008968646 max resid 0.03268103
## Run 185 stress 0.09250205
## Run 186 stress 0.09219212
## Run 187 stress 0.08003947
## ... Procrustes: rmse 0.008965422 max resid 0.03267652
## Run 188 stress 0.1068775
## Run 189 stress 0.09219214
## Run 190 stress 0.09317082
## Run 191 stress 0.09254292
## Run 192 stress 0.09415411
## Run 193 stress 0.07977105
## ... Procrustes: rmse 3.115537e-06 max resid 9.758715e-06
## ... Similar to previous best
## Run 194 stress 0.1057134
## Run 195 stress 0.07977105
## ... New best solution
## ... Procrustes: rmse 4.925598e-06 max resid 1.749852e-05
## ... Similar to previous best
## Run 196 stress 0.09423227
## Run 197 stress 0.0931708
## Run 198 stress 0.109616
## Run 199 stress 0.08003947
## ... Procrustes: rmse 0.008967561 max resid 0.03267759
## Run 200 stress 0.08003946
## ... Procrustes: rmse 0.008968732 max resid 0.03267749
## Run 201 stress 0.07977106
## ... Procrustes: rmse 1.146788e-05 max resid 4.178688e-05
## ... Similar to previous best
## Run 202 stress 0.09443015
## Run 203 stress 0.07977106
## ... Procrustes: rmse 1.200553e-05 max resid 3.139871e-05
## ... Similar to previous best
## Run 204 stress 0.08003946
## ... Procrustes: rmse 0.008968032 max resid 0.03267405
## Run 205 stress 0.08020699
## ... Procrustes: rmse 0.01507541 max resid 0.06251308
## Run 206 stress 0.08020699
## ... Procrustes: rmse 0.01507719 max resid 0.06252819
## Run 207 stress 0.080207
## ... Procrustes: rmse 0.01510687 max resid 0.0626773
## Run 208 stress 0.08020701
## ... Procrustes: rmse 0.01510082 max resid 0.0626489
## Run 209 stress 0.09423223
## Run 210 stress 0.07977107
## ... Procrustes: rmse 4.833825e-05 max resid 0.0001728461
## ... Similar to previous best
## Run 211 stress 0.08020699
## ... Procrustes: rmse 0.0150819 max resid 0.0625477
## Run 212 stress 0.08020699
## ... Procrustes: rmse 0.01508813 max resid 0.06258011
## Run 213 stress 0.09254301
## Run 214 stress 0.07977105
## ... Procrustes: rmse 4.255301e-06 max resid 9.363171e-06
## ... Similar to previous best
## Run 215 stress 0.08020703
## ... Procrustes: rmse 0.01503655 max resid 0.06231462
## Run 216 stress 0.092502
## Run 217 stress 0.080207
## ... Procrustes: rmse 0.01510208 max resid 0.06265184
## Run 218 stress 0.09317092
## Run 219 stress 0.09415411
## Run 220 stress 0.09280584
## Run 221 stress 0.09415411
## Run 222 stress 0.08003947
## ... Procrustes: rmse 0.008968034 max resid 0.03267739
## Run 223 stress 0.08003946
## ... Procrustes: rmse 0.008967122 max resid 0.03267211
## Run 224 stress 0.08080968
## Run 225 stress 0.08003946
## ... Procrustes: rmse 0.008968453 max resid 0.03267711
## Run 226 stress 0.3632456
## Run 227 stress 0.09254291
## Run 228 stress 0.080207
## ... Procrustes: rmse 0.01510348 max resid 0.06266366
## Run 229 stress 0.08020699
## ... Procrustes: rmse 0.01508604 max resid 0.06256546
## Run 230 stress 0.07977108
## ... Procrustes: rmse 5.67921e-05 max resid 0.000206803
## ... Similar to previous best
## Run 231 stress 0.09415417
## Run 232 stress 0.0931708
## Run 233 stress 0.0941542
## Run 234 stress 0.07977107
## ... Procrustes: rmse 1.60666e-05 max resid 4.161669e-05
## ... Similar to previous best
## Run 235 stress 0.08020699
## ... Procrustes: rmse 0.0150925 max resid 0.06260323
## Run 236 stress 0.08003946
## ... Procrustes: rmse 0.008967867 max resid 0.03267575
## Run 237 stress 0.08020699
## ... Procrustes: rmse 0.01508471 max resid 0.06256289
## Run 238 stress 0.08003946
## ... Procrustes: rmse 0.008968008 max resid 0.03267766
## Run 239 stress 0.07977108
## ... Procrustes: rmse 4.545227e-05 max resid 0.0001637854
## ... Similar to previous best
## Run 240 stress 0.09219209
## Run 241 stress 0.09225287
## Run 242 stress 0.07977106
## ... Procrustes: rmse 5.855399e-06 max resid 1.912649e-05
## ... Similar to previous best
## Run 243 stress 0.08020699
## ... Procrustes: rmse 0.01507682 max resid 0.06252205
## Run 244 stress 0.07977105
## ... Procrustes: rmse 1.591218e-06 max resid 4.797992e-06
## ... Similar to previous best
## Run 245 stress 0.07977106
## ... Procrustes: rmse 1.01796e-05 max resid 2.561404e-05
## ... Similar to previous best
## Run 246 stress 0.08003946
## ... Procrustes: rmse 0.008967859 max resid 0.03267707
## Run 247 stress 0.09250195
## Run 248 stress 0.07977106
## ... Procrustes: rmse 2.155948e-05 max resid 8.077219e-05
## ... Similar to previous best
## Run 249 stress 0.08003949
## ... Procrustes: rmse 0.0089683 max resid 0.03267862
## Run 250 stress 0.07977106
## ... Procrustes: rmse 7.051266e-06 max resid 2.413324e-05
## ... Similar to previous best
## Run 251 stress 0.08020699
## ... Procrustes: rmse 0.01508392 max resid 0.06255241
## Run 252 stress 0.09317079
## Run 253 stress 0.08080953
## Run 254 stress 0.07977107
## ... Procrustes: rmse 1.693487e-05 max resid 5.250048e-05
## ... Similar to previous best
## Run 255 stress 0.1089964
## Run 256 stress 0.09225281
## Run 257 stress 0.09423231
## Run 258 stress 0.09443012
## Run 259 stress 0.07977106
## ... Procrustes: rmse 1.753357e-05 max resid 3.851474e-05
## ... Similar to previous best
## Run 260 stress 0.08003946
## ... Procrustes: rmse 0.008967468 max resid 0.03267664
## Run 261 stress 0.08080952
## Run 262 stress 0.09443011
## Run 263 stress 0.08003948
## ... Procrustes: rmse 0.008965482 max resid 0.03267277
## Run 264 stress 0.09280573
## Run 265 stress 0.09254292
## Run 266 stress 0.08003946
## ... Procrustes: rmse 0.008967633 max resid 0.03267845
## Run 267 stress 0.09219209
## Run 268 stress 0.09219209
## Run 269 stress 0.07977106
## ... Procrustes: rmse 9.40408e-06 max resid 2.437127e-05
## ... Similar to previous best
## Run 270 stress 0.07977105
## ... New best solution
## ... Procrustes: rmse 2.011872e-06 max resid 6.525581e-06
## ... Similar to previous best
## Run 271 stress 0.09280592
## Run 272 stress 0.09443022
## Run 273 stress 0.08020702
## ... Procrustes: rmse 0.01511765 max resid 0.0627414
## Run 274 stress 0.08080955
## Run 275 stress 0.1106969
## Run 276 stress 0.08080962
## Run 277 stress 0.080207
## ... Procrustes: rmse 0.01506829 max resid 0.06248077
## Run 278 stress 0.0935844
## Run 279 stress 0.09361929
## Run 280 stress 0.08003946
## ... Procrustes: rmse 0.008968059 max resid 0.03267798
## Run 281 stress 0.09280571
## Run 282 stress 0.08020699
## ... Procrustes: rmse 0.01507808 max resid 0.06252484
## Run 283 stress 0.1045853
## Run 284 stress 0.08020706
## ... Procrustes: rmse 0.01514664 max resid 0.06288191
## Run 285 stress 0.1099775
## Run 286 stress 0.1052003
## Run 287 stress 0.08003946
## ... Procrustes: rmse 0.008967922 max resid 0.03267839
## Run 288 stress 0.08020701
## ... Procrustes: rmse 0.0151137 max resid 0.0627182
## Run 289 stress 0.09358421
## Run 290 stress 0.08003946
## ... Procrustes: rmse 0.008967782 max resid 0.03267573
## Run 291 stress 0.08080953
## Run 292 stress 0.08020699
## ... Procrustes: rmse 0.01506741 max resid 0.06247522
## Run 293 stress 0.080207
## ... Procrustes: rmse 0.01510849 max resid 0.06268632
## Run 294 stress 0.08020699
## ... Procrustes: rmse 0.01507663 max resid 0.06252231
## Run 295 stress 0.1096545
## Run 296 stress 0.1032909
## Run 297 stress 0.07977106
## ... Procrustes: rmse 1.598542e-05 max resid 4.343332e-05
## ... Similar to previous best
## Run 298 stress 0.08080962
## Run 299 stress 0.08003946
## ... Procrustes: rmse 0.00896826 max resid 0.03267755
## Run 300 stress 0.07977106
## ... Procrustes: rmse 1.187156e-05 max resid 2.70274e-05
## ... Similar to previous best
## Run 301 stress 0.08020701
## ... Procrustes: rmse 0.01510365 max resid 0.06266246
## Run 302 stress 0.09254299
## Run 303 stress 0.080207
## ... Procrustes: rmse 0.01507402 max resid 0.06249949
## Run 304 stress 0.1029986
## Run 305 stress 0.09219223
## Run 306 stress 0.09219212
## Run 307 stress 0.07977106
## ... Procrustes: rmse 1.956882e-05 max resid 7.031079e-05
## ... Similar to previous best
## Run 308 stress 0.0921921
## Run 309 stress 0.09415413
## Run 310 stress 0.09443011
## Run 311 stress 0.08020701
## ... Procrustes: rmse 0.01510711 max resid 0.06268011
## Run 312 stress 0.080207
## ... Procrustes: rmse 0.01505913 max resid 0.06243359
## Run 313 stress 0.09443021
## Run 314 stress 0.093263
## Run 315 stress 0.080207
## ... Procrustes: rmse 0.01510752 max resid 0.06268286
## Run 316 stress 0.1065183
## Run 317 stress 0.09219211
## Run 318 stress 0.080207
## ... Procrustes: rmse 0.01505743 max resid 0.06242463
## Run 319 stress 0.09415413
## Run 320 stress 0.09358457
## Run 321 stress 0.09415422
## Run 322 stress 0.09219211
## Run 323 stress 0.09254292
## Run 324 stress 0.08003946
## ... Procrustes: rmse 0.008967436 max resid 0.03267581
## Run 325 stress 0.09415411
## Run 326 stress 0.07977105
## ... Procrustes: rmse 1.544727e-06 max resid 3.776931e-06
## ... Similar to previous best
## Run 327 stress 0.07977106
## ... Procrustes: rmse 1.413839e-05 max resid 4.210401e-05
## ... Similar to previous best
## Run 328 stress 0.1073078
## Run 329 stress 0.09443024
## Run 330 stress 0.07977106
## ... Procrustes: rmse 2.094044e-05 max resid 5.151411e-05
## ... Similar to previous best
## Run 331 stress 0.1106896
## Run 332 stress 0.0921921
## Run 333 stress 0.0941542
## Run 334 stress 0.08020699
## ... Procrustes: rmse 0.01506749 max resid 0.06247592
## Run 335 stress 0.09358442
## Run 336 stress 0.08003947
## ... Procrustes: rmse 0.008966889 max resid 0.03267796
## Run 337 stress 0.08020704
## ... Procrustes: rmse 0.01505059 max resid 0.06238693
## Run 338 stress 0.08080953
## Run 339 stress 0.09254295
## Run 340 stress 0.07977106
## ... Procrustes: rmse 1.794877e-05 max resid 4.815618e-05
## ... Similar to previous best
## Run 341 stress 0.07977106
## ... Procrustes: rmse 2.501838e-05 max resid 9.188402e-05
## ... Similar to previous best
## Run 342 stress 0.08020699
## ... Procrustes: rmse 0.01508993 max resid 0.06259128
## Run 343 stress 0.09415412
## Run 344 stress 0.09361933
## Run 345 stress 0.09358443
## Run 346 stress 0.07977106
## ... Procrustes: rmse 6.914834e-06 max resid 2.582085e-05
## ... Similar to previous best
## Run 347 stress 0.07977105
## ... Procrustes: rmse 6.621525e-06 max resid 1.686842e-05
## ... Similar to previous best
## Run 348 stress 0.1044201
## Run 349 stress 0.08003947
## ... Procrustes: rmse 0.008967914 max resid 0.03267838
## Run 350 stress 0.08003946
## ... Procrustes: rmse 0.0089669 max resid 0.0326774
## Run 351 stress 0.09326299
## Run 352 stress 0.09361939
## Run 353 stress 0.080207
## ... Procrustes: rmse 0.01510021 max resid 0.06264488
## Run 354 stress 0.080207
## ... Procrustes: rmse 0.01509235 max resid 0.06260291
## Run 355 stress 0.07977105
## ... Procrustes: rmse 1.497292e-06 max resid 3.385424e-06
## ... Similar to previous best
## Run 356 stress 0.08003946
## ... Procrustes: rmse 0.008967944 max resid 0.03267869
## Run 357 stress 0.08020703
## ... Procrustes: rmse 0.01511895 max resid 0.06274139
## Run 358 stress 0.0922527
## Run 359 stress 0.08003946
## ... Procrustes: rmse 0.008968081 max resid 0.03267873
## Run 360 stress 0.09280582
## Run 361 stress 0.09225288
## Run 362 stress 0.09361919
## Run 363 stress 0.07977105
## ... Procrustes: rmse 3.241877e-06 max resid 1.038126e-05
## ... Similar to previous best
## Run 364 stress 0.09423224
## Run 365 stress 0.09392287
## Run 366 stress 0.09392285
## Run 367 stress 0.08080951
## Run 368 stress 0.08020699
## ... Procrustes: rmse 0.01508938 max resid 0.0625868
## Run 369 stress 0.080207
## ... Procrustes: rmse 0.01505948 max resid 0.06243384
## Run 370 stress 0.07977106
## ... Procrustes: rmse 1.960041e-05 max resid 5.185965e-05
## ... Similar to previous best
## Run 371 stress 0.08020701
## ... Procrustes: rmse 0.01511454 max resid 0.06271671
## Run 372 stress 0.09392286
## Run 373 stress 0.07977105
## ... Procrustes: rmse 3.541354e-06 max resid 1.219831e-05
## ... Similar to previous best
## Run 374 stress 0.09443017
## Run 375 stress 0.08003946
## ... Procrustes: rmse 0.008968247 max resid 0.0326778
## Run 376 stress 0.09443012
## Run 377 stress 0.09248701
## Run 378 stress 0.0931708
## Run 379 stress 0.08003946
## ... Procrustes: rmse 0.008968094 max resid 0.03267871
## Run 380 stress 0.080207
## ... Procrustes: rmse 0.01510683 max resid 0.06267692
## Run 381 stress 0.09250215
## Run 382 stress 0.08003946
## ... Procrustes: rmse 0.008968084 max resid 0.03267914
## Run 383 stress 0.08003946
## ... Procrustes: rmse 0.008968161 max resid 0.03267952
## Run 384 stress 0.09423223
## Run 385 stress 0.09254292
## Run 386 stress 0.09358424
## Run 387 stress 0.08080955
## Run 388 stress 0.09254292
## Run 389 stress 0.07977106
## ... Procrustes: rmse 9.34525e-06 max resid 2.672507e-05
## ... Similar to previous best
## Run 390 stress 0.07977106
## ... Procrustes: rmse 8.198641e-06 max resid 2.650448e-05
## ... Similar to previous best
## Run 391 stress 0.08003948
## ... Procrustes: rmse 0.008968519 max resid 0.03268003
## Run 392 stress 0.07977106
## ... Procrustes: rmse 3.487567e-05 max resid 0.0001273216
## ... Similar to previous best
## Run 393 stress 0.07977106
## ... Procrustes: rmse 1.133956e-05 max resid 4.068184e-05
## ... Similar to previous best
## Run 394 stress 0.08003946
## ... Procrustes: rmse 0.008968076 max resid 0.03267948
## Run 395 stress 0.08003947
## ... Procrustes: rmse 0.008970783 max resid 0.03268166
## Run 396 stress 0.09443011
## Run 397 stress 0.09443021
## Run 398 stress 0.08003946
## ... Procrustes: rmse 0.008968248 max resid 0.03267972
## Run 399 stress 0.09443011
## Run 400 stress 0.08080957
## Run 401 stress 0.08003948
## ... Procrustes: rmse 0.008968462 max resid 0.03267952
## Run 402 stress 0.08080952
## Run 403 stress 0.07977105
## ... Procrustes: rmse 3.212079e-06 max resid 1.17542e-05
## ... Similar to previous best
## Run 404 stress 0.08003946
## ... Procrustes: rmse 0.008968457 max resid 0.03267812
## Run 405 stress 0.08003946
## ... Procrustes: rmse 0.00896767 max resid 0.03267762
## Run 406 stress 0.07977106
## ... Procrustes: rmse 1.855959e-05 max resid 4.826717e-05
## ... Similar to previous best
## Run 407 stress 0.08003948
## ... Procrustes: rmse 0.008968608 max resid 0.03267354
## Run 408 stress 0.09280584
## Run 409 stress 0.0944302
## Run 410 stress 0.0921921
## Run 411 stress 0.07977106
## ... Procrustes: rmse 7.963426e-06 max resid 2.354231e-05
## ... Similar to previous best
## Run 412 stress 0.0808096
## Run 413 stress 0.080207
## ... Procrustes: rmse 0.01511121 max resid 0.06269965
## Run 414 stress 0.09317086
## Run 415 stress 0.1086321
## Run 416 stress 0.09219216
## Run 417 stress 0.08020699
## ... Procrustes: rmse 0.01507943 max resid 0.06253929
## Run 418 stress 0.0935844
## Run 419 stress 0.08003946
## ... Procrustes: rmse 0.008968556 max resid 0.03267648
## Run 420 stress 0.09250196
## Run 421 stress 0.09254293
## Run 422 stress 0.08020699
## ... Procrustes: rmse 0.01508954 max resid 0.06258909
## Run 423 stress 0.08080958
## Run 424 stress 0.08003946
## ... Procrustes: rmse 0.008967921 max resid 0.0326786
## Run 425 stress 0.08080961
## Run 426 stress 0.08003946
## ... Procrustes: rmse 0.008968228 max resid 0.03267927
## Run 427 stress 0.09248717
## Run 428 stress 0.080207
## ... Procrustes: rmse 0.01509112 max resid 0.06259766
## Run 429 stress 0.07977106
## ... Procrustes: rmse 7.468845e-06 max resid 2.673003e-05
## ... Similar to previous best
## Run 430 stress 0.08080959
## Run 431 stress 0.080207
## ... Procrustes: rmse 0.01510668 max resid 0.06267706
## Run 432 stress 0.09248697
## Run 433 stress 0.1106177
## Run 434 stress 0.08080954
## Run 435 stress 0.09361918
## Run 436 stress 0.1140412
## Run 437 stress 0.08003946
## ... Procrustes: rmse 0.008968085 max resid 0.03267887
## Run 438 stress 0.08003946
## ... Procrustes: rmse 0.008968251 max resid 0.03267877
## Run 439 stress 0.09326302
## Run 440 stress 0.07977106
## ... Procrustes: rmse 3.260558e-05 max resid 0.0001072776
## ... Similar to previous best
## Run 441 stress 0.08020705
## ... Procrustes: rmse 0.01502584 max resid 0.06226219
## Run 442 stress 0.09330278
## Run 443 stress 0.09415411
## Run 444 stress 0.09248708
## Run 445 stress 0.08080953
## Run 446 stress 0.1035315
## Run 447 stress 0.08080951
## Run 448 stress 0.1037787
## Run 449 stress 0.09415412
## Run 450 stress 0.08020699
## ... Procrustes: rmse 0.01508995 max resid 0.06259011
## Run 451 stress 0.09280576
## Run 452 stress 0.08003946
## ... Procrustes: rmse 0.008968028 max resid 0.03267812
## Run 453 stress 0.07977105
## ... Procrustes: rmse 4.744879e-06 max resid 1.8968e-05
## ... Similar to previous best
## Run 454 stress 0.08020699
## ... Procrustes: rmse 0.01508392 max resid 0.06256038
## Run 455 stress 0.07977106
## ... Procrustes: rmse 8.1858e-06 max resid 2.798496e-05
## ... Similar to previous best
## Run 456 stress 0.08080953
## Run 457 stress 0.08003946
## ... Procrustes: rmse 0.008968189 max resid 0.03267868
## Run 458 stress 0.08080953
## Run 459 stress 0.08003946
## ... Procrustes: rmse 0.00896792 max resid 0.03267801
## Run 460 stress 0.1061577
## Run 461 stress 0.09219212
## Run 462 stress 0.08003946
## ... Procrustes: rmse 0.008967132 max resid 0.03267463
## Run 463 stress 0.09248708
## Run 464 stress 0.109616
## Run 465 stress 0.080207
## ... Procrustes: rmse 0.0150553 max resid 0.06241371
## Run 466 stress 0.08080954
## Run 467 stress 0.07977105
## ... Procrustes: rmse 6.586585e-06 max resid 1.941231e-05
## ... Similar to previous best
## Run 468 stress 0.08003946
## ... Procrustes: rmse 0.008967814 max resid 0.03267867
## Run 469 stress 0.08003946
## ... Procrustes: rmse 0.008968406 max resid 0.03267934
## Run 470 stress 0.09254291
## Run 471 stress 0.08020699
## ... Procrustes: rmse 0.01507616 max resid 0.06251698
## Run 472 stress 0.09358436
## Run 473 stress 0.080207
## ... Procrustes: rmse 0.0151026 max resid 0.06265801
## Run 474 stress 0.08080951
## Run 475 stress 0.080207
## ... Procrustes: rmse 0.01510418 max resid 0.06266588
## Run 476 stress 0.08020699
## ... Procrustes: rmse 0.01508801 max resid 0.06258143
## Run 477 stress 0.08020699
## ... Procrustes: rmse 0.01507652 max resid 0.06252114
## Run 478 stress 0.09280583
## Run 479 stress 0.08080969
## Run 480 stress 0.08003946
## ... Procrustes: rmse 0.00896807 max resid 0.03267918
## Run 481 stress 0.09423229
## Run 482 stress 0.09254293
## Run 483 stress 0.08020699
## ... Procrustes: rmse 0.01508363 max resid 0.06255806
## Run 484 stress 0.09219209
## Run 485 stress 0.09358437
## Run 486 stress 0.07977106
## ... Procrustes: rmse 5.666799e-06 max resid 1.812246e-05
## ... Similar to previous best
## Run 487 stress 0.1071467
## Run 488 stress 0.09415413
## Run 489 stress 0.08020699
## ... Procrustes: rmse 0.01508929 max resid 0.06258756
## Run 490 stress 0.08020699
## ... Procrustes: rmse 0.01509094 max resid 0.06259634
## Run 491 stress 0.08020704
## ... Procrustes: rmse 0.01512637 max resid 0.06277925
## Run 492 stress 0.08020699
## ... Procrustes: rmse 0.0150854 max resid 0.06256315
## Run 493 stress 0.08003947
## ... Procrustes: rmse 0.008967125 max resid 0.03267375
## Run 494 stress 0.08020703
## ... Procrustes: rmse 0.01508021 max resid 0.06253879
## Run 495 stress 0.08080953
## Run 496 stress 0.09248723
## Run 497 stress 0.08003946
## ... Procrustes: rmse 0.008968483 max resid 0.03267947
## Run 498 stress 0.09330298
## Run 499 stress 0.09317084
## Run 500 stress 0.09317079
## *** Best solution repeated 28 timesround(pd_NMDS$stress, digits = 2)## [1] 0.08# Mixed and stratified lakes
pdms_NMDS <- metaMDS(pdms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.05034944
## Run 1 stress 0.05169928
## Run 2 stress 0.06904469
## Run 3 stress 0.05332951
## Run 4 stress 0.06938768
## Run 5 stress 0.05355333
## Run 6 stress 0.05928211
## Run 7 stress 0.06136678
## Run 8 stress 0.06476224
## Run 9 stress 0.05577189
## Run 10 stress 0.05034952
## ... Procrustes: rmse 0.0002513181 max resid 0.0006159176
## ... Similar to previous best
## Run 11 stress 0.05049127
## ... Procrustes: rmse 0.03591959 max resid 0.1226653
## Run 12 stress 0.05928215
## Run 13 stress 0.05049129
## ... Procrustes: rmse 0.03592274 max resid 0.1226741
## Run 14 stress 0.05169928
## Run 15 stress 0.05049125
## ... Procrustes: rmse 0.0358915 max resid 0.1225855
## Run 16 stress 0.05049248
## ... Procrustes: rmse 0.03581969 max resid 0.1223524
## Run 17 stress 0.05403596
## Run 18 stress 0.05034941
## ... New best solution
## ... Procrustes: rmse 0.0001119516 max resid 0.0002897073
## ... Similar to previous best
## Run 19 stress 0.05355229
## Run 20 stress 0.05440343
## Run 21 stress 0.0535522
## Run 22 stress 0.05355231
## Run 23 stress 0.05900152
## Run 24 stress 0.05577191
## Run 25 stress 0.05900151
## Run 26 stress 0.05049227
## ... Procrustes: rmse 0.0357583 max resid 0.1221627
## Run 27 stress 0.05577185
## Run 28 stress 0.05440342
## Run 29 stress 0.05049169
## ... Procrustes: rmse 0.03579363 max resid 0.1222795
## Run 30 stress 0.05968626
## Run 31 stress 0.05364429
## Run 32 stress 0.05829933
## Run 33 stress 0.05979229
## Run 34 stress 0.06478522
## Run 35 stress 0.05440343
## Run 36 stress 0.0535522
## Run 37 stress 0.05169927
## Run 38 stress 0.05169927
## Run 39 stress 0.05049168
## ... Procrustes: rmse 0.0357988 max resid 0.1222948
## Run 40 stress 0.0503495
## ... Procrustes: rmse 0.0001777417 max resid 0.0004694626
## ... Similar to previous best
## Run 41 stress 0.06478546
## Run 42 stress 0.05034943
## ... Procrustes: rmse 2.322038e-05 max resid 5.631387e-05
## ... Similar to previous best
## Run 43 stress 0.05355332
## Run 44 stress 0.05577178
## Run 45 stress 0.05049128
## ... Procrustes: rmse 0.03587969 max resid 0.1225356
## Run 46 stress 0.05968628
## Run 47 stress 0.06136686
## Run 48 stress 0.05440342
## Run 49 stress 0.05979229
## Run 50 stress 0.06609068
## Run 51 stress 0.05577179
## Run 52 stress 0.06309836
## Run 53 stress 0.05332948
## Run 54 stress 0.05034947
## ... Procrustes: rmse 9.449138e-05 max resid 0.0002530002
## ... Similar to previous best
## Run 55 stress 0.3592572
## Run 56 stress 0.05968634
## Run 57 stress 0.0582994
## Run 58 stress 0.05034943
## ... Procrustes: rmse 3.684745e-05 max resid 9.462112e-05
## ... Similar to previous best
## Run 59 stress 0.05034942
## ... Procrustes: rmse 5.663432e-05 max resid 0.000160109
## ... Similar to previous best
## Run 60 stress 0.06674564
## Run 61 stress 0.05577176
## Run 62 stress 0.05355234
## Run 63 stress 0.0536444
## Run 64 stress 0.05049216
## ... Procrustes: rmse 0.03578206 max resid 0.1222321
## Run 65 stress 0.06640359
## Run 66 stress 0.05169927
## Run 67 stress 0.05440343
## Run 68 stress 0.05577179
## Run 69 stress 0.05034953
## ... Procrustes: rmse 0.0001497493 max resid 0.0003910249
## ... Similar to previous best
## Run 70 stress 0.06478539
## Run 71 stress 0.05332949
## Run 72 stress 0.05928224
## Run 73 stress 0.05169928
## Run 74 stress 0.05928221
## Run 75 stress 0.05829931
## Run 76 stress 0.07015943
## Run 77 stress 0.06537624
## Run 78 stress 0.05169927
## Run 79 stress 0.05034947
## ... Procrustes: rmse 0.0001416733 max resid 0.0003730022
## ... Similar to previous best
## Run 80 stress 0.06111766
## Run 81 stress 0.05928258
## Run 82 stress 0.05968626
## Run 83 stress 0.05968647
## Run 84 stress 0.06136676
## Run 85 stress 0.05968626
## Run 86 stress 0.06136693
## Run 87 stress 0.062313
## Run 88 stress 0.05034956
## ... Procrustes: rmse 0.000168225 max resid 0.0004381748
## ... Similar to previous best
## Run 89 stress 0.05049223
## ... Procrustes: rmse 0.03578163 max resid 0.1222303
## Run 90 stress 0.05049227
## ... Procrustes: rmse 0.03577688 max resid 0.1222139
## Run 91 stress 0.05829931
## Run 92 stress 0.05332957
## Run 93 stress 0.05440342
## Run 94 stress 0.05049128
## ... Procrustes: rmse 0.03588397 max resid 0.1225489
## Run 95 stress 0.05829931
## Run 96 stress 0.06231291
## Run 97 stress 0.05355225
## Run 98 stress 0.06716793
## Run 99 stress 0.05169927
## Run 100 stress 0.06136679
## Run 101 stress 0.05900151
## Run 102 stress 0.0516993
## Run 103 stress 0.05332952
## Run 104 stress 0.05355232
## Run 105 stress 0.05928231
## Run 106 stress 0.05169928
## Run 107 stress 0.06027437
## Run 108 stress 0.05364431
## Run 109 stress 0.06483228
## Run 110 stress 0.06640347
## Run 111 stress 0.05049148
## ... Procrustes: rmse 0.03575219 max resid 0.1221664
## Run 112 stress 0.05169929
## Run 113 stress 0.05034941
## ... New best solution
## ... Procrustes: rmse 2.869684e-05 max resid 7.565256e-05
## ... Similar to previous best
## Run 114 stress 0.05968629
## Run 115 stress 0.05034949
## ... Procrustes: rmse 0.0001342015 max resid 0.0003568826
## ... Similar to previous best
## Run 116 stress 0.0592821
## Run 117 stress 0.05355223
## Run 118 stress 0.05034952
## ... Procrustes: rmse 0.0001669554 max resid 0.0004339278
## ... Similar to previous best
## Run 119 stress 0.05034949
## ... Procrustes: rmse 0.0001412877 max resid 0.0003824361
## ... Similar to previous best
## Run 120 stress 0.05049194
## ... Procrustes: rmse 0.03579606 max resid 0.1222832
## Run 121 stress 0.06309847
## Run 122 stress 0.0533295
## Run 123 stress 0.05403621
## Run 124 stress 0.05049165
## ... Procrustes: rmse 0.035806 max resid 0.1223201
## Run 125 stress 0.05928236
## Run 126 stress 0.05169929
## Run 127 stress 0.05355237
## Run 128 stress 0.05049145
## ... Procrustes: rmse 0.03596207 max resid 0.1227769
## Run 129 stress 0.06844318
## Run 130 stress 0.05332951
## Run 131 stress 0.05034947
## ... Procrustes: rmse 0.0001143822 max resid 0.000291013
## ... Similar to previous best
## Run 132 stress 0.05034947
## ... Procrustes: rmse 0.0001299551 max resid 0.0003387644
## ... Similar to previous best
## Run 133 stress 0.05968631
## Run 134 stress 0.0582993
## Run 135 stress 0.05034945
## ... Procrustes: rmse 8.976964e-05 max resid 0.0002413732
## ... Similar to previous best
## Run 136 stress 0.05049209
## ... Procrustes: rmse 0.03579333 max resid 0.122272
## Run 137 stress 0.05034944
## ... Procrustes: rmse 8.366915e-05 max resid 0.0002193435
## ... Similar to previous best
## Run 138 stress 0.0504919
## ... Procrustes: rmse 0.03579627 max resid 0.122285
## Run 139 stress 0.0503495
## ... Procrustes: rmse 0.0001450992 max resid 0.0003851388
## ... Similar to previous best
## Run 140 stress 0.06038954
## Run 141 stress 0.06844287
## Run 142 stress 0.05169927
## Run 143 stress 0.06885068
## Run 144 stress 0.05332949
## Run 145 stress 0.05034948
## ... Procrustes: rmse 0.0001158476 max resid 0.0003402796
## ... Similar to previous best
## Run 146 stress 0.06844292
## Run 147 stress 0.05440346
## Run 148 stress 0.05169927
## Run 149 stress 0.05034952
## ... Procrustes: rmse 9.274204e-05 max resid 0.0002298989
## ... Similar to previous best
## Run 150 stress 0.07217932
## Run 151 stress 0.05403594
## Run 152 stress 0.05169927
## Run 153 stress 0.05355222
## Run 154 stress 0.05829933
## Run 155 stress 0.05364402
## Run 156 stress 0.0596863
## Run 157 stress 0.05169929
## Run 158 stress 0.05034948
## ... Procrustes: rmse 0.0001238202 max resid 0.0003403602
## ... Similar to previous best
## Run 159 stress 0.05829937
## Run 160 stress 0.05928216
## Run 161 stress 0.05169927
## Run 162 stress 0.05034943
## ... Procrustes: rmse 6.602301e-05 max resid 0.0001732297
## ... Similar to previous best
## Run 163 stress 0.05355225
## Run 164 stress 0.05169928
## Run 165 stress 0.05034945
## ... Procrustes: rmse 8.715471e-05 max resid 0.000175811
## ... Similar to previous best
## Run 166 stress 0.05403592
## Run 167 stress 0.05034946
## ... Procrustes: rmse 0.0001124735 max resid 0.0002812877
## ... Similar to previous best
## Run 168 stress 0.05403607
## Run 169 stress 0.05364453
## Run 170 stress 0.06038948
## Run 171 stress 0.05169929
## Run 172 stress 0.05034945
## ... Procrustes: rmse 7.304423e-05 max resid 0.0001851297
## ... Similar to previous best
## Run 173 stress 0.05364381
## Run 174 stress 0.05577192
## Run 175 stress 0.0582993
## Run 176 stress 0.05364387
## Run 177 stress 0.06789763
## Run 178 stress 0.05440343
## Run 179 stress 0.05049133
## ... Procrustes: rmse 0.03591294 max resid 0.122635
## Run 180 stress 0.05355236
## Run 181 stress 0.05169929
## Run 182 stress 0.05034953
## ... Procrustes: rmse 0.0001662843 max resid 0.0004474764
## ... Similar to previous best
## Run 183 stress 0.05049131
## ... Procrustes: rmse 0.03590163 max resid 0.122601
## Run 184 stress 0.05034945
## ... Procrustes: rmse 9.106411e-05 max resid 0.0002617201
## ... Similar to previous best
## Run 185 stress 0.05169927
## Run 186 stress 0.06362808
## Run 187 stress 0.05049137
## ... Procrustes: rmse 0.03593364 max resid 0.1226942
## Run 188 stress 0.05900148
## Run 189 stress 0.05169929
## Run 190 stress 0.0592822
## Run 191 stress 0.05355228
## Run 192 stress 0.06478551
## Run 193 stress 0.05355221
## Run 194 stress 0.05577181
## Run 195 stress 0.05049142
## ... Procrustes: rmse 0.03592208 max resid 0.1226572
## Run 196 stress 0.06309835
## Run 197 stress 0.06309843
## Run 198 stress 0.06504215
## Run 199 stress 0.05049155
## ... Procrustes: rmse 0.03580962 max resid 0.1223332
## Run 200 stress 0.05034943
## ... Procrustes: rmse 4.981513e-05 max resid 0.0001386869
## ... Similar to previous best
## Run 201 stress 0.05332955
## Run 202 stress 0.05034949
## ... Procrustes: rmse 0.0001318455 max resid 0.0003444023
## ... Similar to previous best
## Run 203 stress 0.05034945
## ... Procrustes: rmse 8.963718e-05 max resid 0.0002323436
## ... Similar to previous best
## Run 204 stress 0.05034951
## ... Procrustes: rmse 0.0001439149 max resid 0.0003816056
## ... Similar to previous best
## Run 205 stress 0.05364445
## Run 206 stress 0.05440343
## Run 207 stress 0.05049159
## ... Procrustes: rmse 0.03580804 max resid 0.1223278
## Run 208 stress 0.06409272
## Run 209 stress 0.05034945
## ... Procrustes: rmse 0.0001053039 max resid 0.0002769141
## ... Similar to previous best
## Run 210 stress 0.05403577
## Run 211 stress 0.05332953
## Run 212 stress 0.05169927
## Run 213 stress 0.05355221
## Run 214 stress 0.0557719
## Run 215 stress 0.06362784
## Run 216 stress 0.05169928
## Run 217 stress 0.05169928
## Run 218 stress 0.05332974
## Run 219 stress 0.06136677
## Run 220 stress 0.05034944
## ... Procrustes: rmse 7.22721e-05 max resid 0.0001865872
## ... Similar to previous best
## Run 221 stress 0.05034944
## ... Procrustes: rmse 7.776967e-05 max resid 0.0002023037
## ... Similar to previous best
## Run 222 stress 0.06136682
## Run 223 stress 0.05049139
## ... Procrustes: rmse 0.03594839 max resid 0.1227378
## Run 224 stress 0.06478527
## Run 225 stress 0.05332951
## Run 226 stress 0.06730243
## Run 227 stress 0.07242316
## Run 228 stress 0.05829934
## Run 229 stress 0.05364452
## Run 230 stress 0.05034942
## ... Procrustes: rmse 4.677017e-05 max resid 0.0001246863
## ... Similar to previous best
## Run 231 stress 0.06483224
## Run 232 stress 0.05169927
## Run 233 stress 0.06038945
## Run 234 stress 0.05034964
## ... Procrustes: rmse 0.0002425113 max resid 0.000648037
## ... Similar to previous best
## Run 235 stress 0.0647855
## Run 236 stress 0.05332948
## Run 237 stress 0.05034943
## ... Procrustes: rmse 6.850734e-05 max resid 0.0001712203
## ... Similar to previous best
## Run 238 stress 0.05440342
## Run 239 stress 0.06478539
## Run 240 stress 0.06027427
## Run 241 stress 0.05332947
## Run 242 stress 0.05900149
## Run 243 stress 0.05034941
## ... Procrustes: rmse 1.274759e-05 max resid 2.871942e-05
## ... Similar to previous best
## Run 244 stress 0.05332949
## Run 245 stress 0.05968628
## Run 246 stress 0.05049227
## ... Procrustes: rmse 0.03580563 max resid 0.1223034
## Run 247 stress 0.05968631
## Run 248 stress 0.05829932
## Run 249 stress 0.05169933
## Run 250 stress 0.05332951
## Run 251 stress 0.3657342
## Run 252 stress 0.05355223
## Run 253 stress 0.06027436
## Run 254 stress 0.06027437
## Run 255 stress 0.05049236
## ... Procrustes: rmse 0.03578209 max resid 0.12223
## Run 256 stress 0.05034942
## ... Procrustes: rmse 6.168534e-05 max resid 0.0001622454
## ... Similar to previous best
## Run 257 stress 0.05440343
## Run 258 stress 0.05049221
## ... Procrustes: rmse 0.03578723 max resid 0.1222496
## Run 259 stress 0.05968625
## Run 260 stress 0.05034945
## ... Procrustes: rmse 0.0001014714 max resid 0.0002646534
## ... Similar to previous best
## Run 261 stress 0.06655716
## Run 262 stress 0.05355226
## Run 263 stress 0.05034952
## ... Procrustes: rmse 0.0001614409 max resid 0.0004396591
## ... Similar to previous best
## Run 264 stress 0.05034954
## ... Procrustes: rmse 0.0001832257 max resid 0.000489564
## ... Similar to previous best
## Run 265 stress 0.05355225
## Run 266 stress 0.06826672
## Run 267 stress 0.344439
## Run 268 stress 0.05332959
## Run 269 stress 0.05355224
## Run 270 stress 0.05968633
## Run 271 stress 0.06203056
## Run 272 stress 0.05829936
## Run 273 stress 0.05049211
## ... Procrustes: rmse 0.03579298 max resid 0.1222692
## Run 274 stress 0.05049139
## ... Procrustes: rmse 0.03594342 max resid 0.1227223
## Run 275 stress 0.05364376
## Run 276 stress 0.05355283
## Run 277 stress 0.06136684
## Run 278 stress 0.06038954
## Run 279 stress 0.0630984
## Run 280 stress 0.06478543
## Run 281 stress 0.06504216
## Run 282 stress 0.05169929
## Run 283 stress 0.06309853
## Run 284 stress 0.06309838
## Run 285 stress 0.06231292
## Run 286 stress 0.05829929
## Run 287 stress 0.05577179
## Run 288 stress 0.05169928
## Run 289 stress 0.05034954
## ... Procrustes: rmse 0.0001834025 max resid 0.000483294
## ... Similar to previous best
## Run 290 stress 0.05034942
## ... Procrustes: rmse 5.732908e-05 max resid 0.0001491371
## ... Similar to previous best
## Run 291 stress 0.05049168
## ... Procrustes: rmse 0.03580348 max resid 0.1223119
## Run 292 stress 0.05364417
## Run 293 stress 0.05355221
## Run 294 stress 0.05364456
## Run 295 stress 0.05364426
## Run 296 stress 0.06038947
## Run 297 stress 0.06231321
## Run 298 stress 0.05829942
## Run 299 stress 0.05169927
## Run 300 stress 0.05034957
## ... Procrustes: rmse 0.0001919883 max resid 0.0005213613
## ... Similar to previous best
## Run 301 stress 0.06309871
## Run 302 stress 0.05034943
## ... Procrustes: rmse 5.438152e-05 max resid 0.0001385874
## ... Similar to previous best
## Run 303 stress 0.06231311
## Run 304 stress 0.05355327
## Run 305 stress 0.05979225
## Run 306 stress 0.05169928
## Run 307 stress 0.05034947
## ... Procrustes: rmse 0.0001117442 max resid 0.0002992392
## ... Similar to previous best
## Run 308 stress 0.05034945
## ... Procrustes: rmse 8.092452e-05 max resid 0.0002084174
## ... Similar to previous best
## Run 309 stress 0.05364444
## Run 310 stress 0.05440351
## Run 311 stress 0.05332948
## Run 312 stress 0.359257
## Run 313 stress 0.05034942
## ... Procrustes: rmse 2.915763e-05 max resid 8.561606e-05
## ... Similar to previous best
## Run 314 stress 0.05829933
## Run 315 stress 0.05034948
## ... Procrustes: rmse 0.0001261928 max resid 0.0003292455
## ... Similar to previous best
## Run 316 stress 0.06231288
## Run 317 stress 0.06409519
## Run 318 stress 0.06493684
## Run 319 stress 0.055772
## Run 320 stress 0.05403612
## Run 321 stress 0.06231291
## Run 322 stress 0.0673025
## Run 323 stress 0.0535533
## Run 324 stress 0.05829934
## Run 325 stress 0.05169928
## Run 326 stress 0.05577191
## Run 327 stress 0.06478518
## Run 328 stress 0.05332963
## Run 329 stress 0.05169928
## Run 330 stress 0.05968628
## Run 331 stress 0.05968631
## Run 332 stress 0.0590015
## Run 333 stress 0.05034944
## ... Procrustes: rmse 7.302106e-05 max resid 0.0001977675
## ... Similar to previous best
## Run 334 stress 0.05968627
## Run 335 stress 0.05034948
## ... Procrustes: rmse 0.0001265339 max resid 0.0003615303
## ... Similar to previous best
## Run 336 stress 0.05440343
## Run 337 stress 0.06231288
## Run 338 stress 0.05034945
## ... Procrustes: rmse 8.395035e-05 max resid 0.000161768
## ... Similar to previous best
## Run 339 stress 0.05364417
## Run 340 stress 0.06943882
## Run 341 stress 0.06231303
## Run 342 stress 0.05440342
## Run 343 stress 0.05034955
## ... Procrustes: rmse 0.0001677251 max resid 0.0004543576
## ... Similar to previous best
## Run 344 stress 0.06231299
## Run 345 stress 0.05034942
## ... Procrustes: rmse 4.935434e-05 max resid 0.0001268967
## ... Similar to previous best
## Run 346 stress 0.06136674
## Run 347 stress 0.05332955
## Run 348 stress 0.06950975
## Run 349 stress 0.05928228
## Run 350 stress 0.05403583
## Run 351 stress 0.0582993
## Run 352 stress 0.0535529
## Run 353 stress 0.05332971
## Run 354 stress 0.05403557
## Run 355 stress 0.06943847
## Run 356 stress 0.05169927
## Run 357 stress 0.05169927
## Run 358 stress 0.0503495
## ... Procrustes: rmse 0.0001392733 max resid 0.0003709324
## ... Similar to previous best
## Run 359 stress 0.0503495
## ... Procrustes: rmse 0.0001411781 max resid 0.0003841931
## ... Similar to previous best
## Run 360 stress 0.0504921
## ... Procrustes: rmse 0.03579483 max resid 0.1222759
## Run 361 stress 0.05355236
## Run 362 stress 0.06309853
## Run 363 stress 0.05169927
## Run 364 stress 0.05928219
## Run 365 stress 0.05355226
## Run 366 stress 0.05034954
## ... Procrustes: rmse 0.0001632897 max resid 0.0004348286
## ... Similar to previous best
## Run 367 stress 0.05968638
## Run 368 stress 0.3591112
## Run 369 stress 0.05049135
## ... Procrustes: rmse 0.03591604 max resid 0.1226419
## Run 370 stress 0.05169927
## Run 371 stress 0.05440342
## Run 372 stress 0.05034944
## ... Procrustes: rmse 8.99932e-05 max resid 0.0002384711
## ... Similar to previous best
## Run 373 stress 0.05928243
## Run 374 stress 0.05034944
## ... Procrustes: rmse 7.818153e-05 max resid 0.0002025906
## ... Similar to previous best
## Run 375 stress 0.0592824
## Run 376 stress 0.05034943
## ... Procrustes: rmse 6.597434e-05 max resid 0.0001721826
## ... Similar to previous best
## Run 377 stress 0.05577191
## Run 378 stress 0.05829932
## Run 379 stress 0.05403584
## Run 380 stress 0.05364458
## Run 381 stress 0.05034952
## ... Procrustes: rmse 0.0001541096 max resid 0.0004488824
## ... Similar to previous best
## Run 382 stress 0.06478514
## Run 383 stress 0.06655704
## Run 384 stress 0.05900152
## Run 385 stress 0.05332951
## Run 386 stress 0.05049245
## ... Procrustes: rmse 0.03579583 max resid 0.1222701
## Run 387 stress 0.05049177
## ... Procrustes: rmse 0.03580176 max resid 0.1223046
## Run 388 stress 0.06674571
## Run 389 stress 0.05169928
## Run 390 stress 0.05829934
## Run 391 stress 0.05332967
## Run 392 stress 0.06640368
## Run 393 stress 0.05169929
## Run 394 stress 0.05355223
## Run 395 stress 0.05968633
## Run 396 stress 0.05169928
## Run 397 stress 0.06674555
## Run 398 stress 0.06640335
## Run 399 stress 0.0540357
## Run 400 stress 0.05979234
## Run 401 stress 0.05049136
## ... Procrustes: rmse 0.03592818 max resid 0.1226773
## Run 402 stress 0.05034949
## ... Procrustes: rmse 0.0001384842 max resid 0.0003896775
## ... Similar to previous best
## Run 403 stress 0.05034945
## ... Procrustes: rmse 7.657799e-05 max resid 0.0002153071
## ... Similar to previous best
## Run 404 stress 0.05355221
## Run 405 stress 0.0504916
## ... Procrustes: rmse 0.03580759 max resid 0.1223262
## Run 406 stress 0.06038951
## Run 407 stress 0.06622052
## Run 408 stress 0.05355231
## Run 409 stress 0.05034952
## ... Procrustes: rmse 0.000142328 max resid 0.0003975483
## ... Similar to previous best
## Run 410 stress 0.06362778
## Run 411 stress 0.06896925
## Run 412 stress 0.06231286
## Run 413 stress 0.05364419
## Run 414 stress 0.05332952
## Run 415 stress 0.05968626
## Run 416 stress 0.05928219
## Run 417 stress 0.05829933
## Run 418 stress 0.05968634
## Run 419 stress 0.05829942
## Run 420 stress 0.05034952
## ... Procrustes: rmse 0.0001679011 max resid 0.0004477787
## ... Similar to previous best
## Run 421 stress 0.05829928
## Run 422 stress 0.05577179
## Run 423 stress 0.05829937
## Run 424 stress 0.06476223
## Run 425 stress 0.05440343
## Run 426 stress 0.05364436
## Run 427 stress 0.05169932
## Run 428 stress 0.05829929
## Run 429 stress 0.05403578
## Run 430 stress 0.06362796
## Run 431 stress 0.05928233
## Run 432 stress 0.05355228
## Run 433 stress 0.05355223
## Run 434 stress 0.05440345
## Run 435 stress 0.06027427
## Run 436 stress 0.06027426
## Run 437 stress 0.05034941
## ... Procrustes: rmse 3.35732e-06 max resid 7.005559e-06
## ... Similar to previous best
## Run 438 stress 0.05034947
## ... Procrustes: rmse 0.0001203509 max resid 0.0003422248
## ... Similar to previous best
## Run 439 stress 0.0535522
## Run 440 stress 0.0503495
## ... Procrustes: rmse 0.0001385127 max resid 0.0003749967
## ... Similar to previous best
## Run 441 stress 0.06231312
## Run 442 stress 0.05169927
## Run 443 stress 0.0535523
## Run 444 stress 0.05034948
## ... Procrustes: rmse 0.0001313839 max resid 0.0003500602
## ... Similar to previous best
## Run 445 stress 0.0516993
## Run 446 stress 0.06478513
## Run 447 stress 0.06027432
## Run 448 stress 0.06844286
## Run 449 stress 0.05332948
## Run 450 stress 0.05049198
## ... Procrustes: rmse 0.03579585 max resid 0.1222823
## Run 451 stress 0.06027451
## Run 452 stress 0.05049187
## ... Procrustes: rmse 0.03579767 max resid 0.1222901
## Run 453 stress 0.05034943
## ... Procrustes: rmse 6.099212e-05 max resid 0.000157489
## ... Similar to previous best
## Run 454 stress 0.05829939
## Run 455 stress 0.06704969
## Run 456 stress 0.06640351
## Run 457 stress 0.05049262
## ... Procrustes: rmse 0.03579027 max resid 0.1222529
## Run 458 stress 0.05049146
## ... Procrustes: rmse 0.03581628 max resid 0.1223557
## Run 459 stress 0.05049132
## ... Procrustes: rmse 0.0359047 max resid 0.1226095
## Run 460 stress 0.05403606
## Run 461 stress 0.05332958
## Run 462 stress 0.05829938
## Run 463 stress 0.05355228
## Run 464 stress 0.05968626
## Run 465 stress 0.05034955
## ... Procrustes: rmse 0.0001801883 max resid 0.0004778
## ... Similar to previous best
## Run 466 stress 0.06630528
## Run 467 stress 0.06111767
## Run 468 stress 0.05049223
## ... Procrustes: rmse 0.03578682 max resid 0.1222485
## Run 469 stress 0.05169928
## Run 470 stress 0.05364463
## Run 471 stress 0.05049127
## ... Procrustes: rmse 0.03588592 max resid 0.1225572
## Run 472 stress 0.05034957
## ... Procrustes: rmse 0.0001804342 max resid 0.0004860849
## ... Similar to previous best
## Run 473 stress 0.06478525
## Run 474 stress 0.06136683
## Run 475 stress 0.05034944
## ... Procrustes: rmse 7.344334e-05 max resid 0.0001583261
## ... Similar to previous best
## Run 476 stress 0.05169927
## Run 477 stress 0.05034953
## ... Procrustes: rmse 0.0001666159 max resid 0.0004530465
## ... Similar to previous best
## Run 478 stress 0.05169928
## Run 479 stress 0.0535523
## Run 480 stress 0.05049168
## ... Procrustes: rmse 0.03581041 max resid 0.1223351
## Run 481 stress 0.06038953
## Run 482 stress 0.07104326
## Run 483 stress 0.05034948
## ... Procrustes: rmse 0.0001182879 max resid 0.0003155855
## ... Similar to previous best
## Run 484 stress 0.05355239
## Run 485 stress 0.06231302
## Run 486 stress 0.05968638
## Run 487 stress 0.05169928
## Run 488 stress 0.05928261
## Run 489 stress 0.05440343
## Run 490 stress 0.06309837
## Run 491 stress 0.06136679
## Run 492 stress 0.06609072
## Run 493 stress 0.05034944
## ... Procrustes: rmse 3.986191e-05 max resid 9.987493e-05
## ... Similar to previous best
## Run 494 stress 0.05169934
## Run 495 stress 0.05332947
## Run 496 stress 0.05049197
## ... Procrustes: rmse 0.03579636 max resid 0.1222834
## Run 497 stress 0.05034942
## ... Procrustes: rmse 3.921683e-05 max resid 0.0001033313
## ... Similar to previous best
## Run 498 stress 0.06027436
## Run 499 stress 0.0504916
## ... Procrustes: rmse 0.03579077 max resid 0.1222781
## Run 500 stress 0.05049129
## ... Procrustes: rmse 0.03589046 max resid 0.1225692
## *** Best solution repeated 69 times# Ocean sites and mixed lakes
pdom_NMDS <- metaMDS(pdom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.1004721
## Run 1 stress 0.1004721
## ... New best solution
## ... Procrustes: rmse 1.371069e-06 max resid 3.451741e-06
## ... Similar to previous best
## Run 2 stress 0.1004721
## ... Procrustes: rmse 2.745198e-06 max resid 7.001458e-06
## ... Similar to previous best
## Run 3 stress 0.1004721
## ... Procrustes: rmse 2.280855e-06 max resid 5.904657e-06
## ... Similar to previous best
## Run 4 stress 0.1524179
## Run 5 stress 0.1004721
## ... Procrustes: rmse 4.393051e-06 max resid 1.252852e-05
## ... Similar to previous best
## Run 6 stress 0.1004721
## ... Procrustes: rmse 3.770682e-06 max resid 7.920987e-06
## ... Similar to previous best
## Run 7 stress 0.1004721
## ... Procrustes: rmse 3.050485e-06 max resid 9.072242e-06
## ... Similar to previous best
## Run 8 stress 0.1004721
## ... New best solution
## ... Procrustes: rmse 7.940575e-07 max resid 1.532408e-06
## ... Similar to previous best
## Run 9 stress 0.1004721
## ... Procrustes: rmse 2.840354e-06 max resid 5.750285e-06
## ... Similar to previous best
## Run 10 stress 0.1429816
## Run 11 stress 0.1512115
## Run 12 stress 0.1004721
## ... Procrustes: rmse 3.624327e-06 max resid 1.005685e-05
## ... Similar to previous best
## Run 13 stress 0.1004721
## ... Procrustes: rmse 1.986407e-06 max resid 5.393094e-06
## ... Similar to previous best
## Run 14 stress 0.1004721
## ... Procrustes: rmse 6.300667e-07 max resid 1.548665e-06
## ... Similar to previous best
## Run 15 stress 0.1427047
## Run 16 stress 0.1004721
## ... Procrustes: rmse 1.931637e-06 max resid 5.318162e-06
## ... Similar to previous best
## Run 17 stress 0.1427047
## Run 18 stress 0.1004721
## ... Procrustes: rmse 1.699764e-05 max resid 4.791554e-05
## ... Similar to previous best
## Run 19 stress 0.1004721
## ... Procrustes: rmse 5.496431e-07 max resid 1.263723e-06
## ... Similar to previous best
## Run 20 stress 0.1429817
## Run 21 stress 0.31278
## Run 22 stress 0.1427047
## Run 23 stress 0.1429816
## Run 24 stress 0.1004721
## ... Procrustes: rmse 4.084679e-06 max resid 1.17892e-05
## ... Similar to previous best
## Run 25 stress 0.1429819
## Run 26 stress 0.1429817
## Run 27 stress 0.1429817
## Run 28 stress 0.1004721
## ... Procrustes: rmse 1.429042e-05 max resid 4.101681e-05
## ... Similar to previous best
## Run 29 stress 0.1004721
## ... Procrustes: rmse 3.342241e-06 max resid 9.497197e-06
## ... Similar to previous best
## Run 30 stress 0.1004721
## ... Procrustes: rmse 1.008077e-06 max resid 2.209778e-06
## ... Similar to previous best
## Run 31 stress 0.1004721
## ... Procrustes: rmse 2.056719e-06 max resid 4.707582e-06
## ... Similar to previous best
## Run 32 stress 0.1427047
## Run 33 stress 0.1427047
## Run 34 stress 0.152418
## Run 35 stress 0.1004721
## ... Procrustes: rmse 3.937366e-06 max resid 7.198502e-06
## ... Similar to previous best
## Run 36 stress 0.1004721
## ... Procrustes: rmse 6.50016e-06 max resid 1.842562e-05
## ... Similar to previous best
## Run 37 stress 0.1512114
## Run 38 stress 0.1004721
## ... Procrustes: rmse 2.408999e-06 max resid 4.958766e-06
## ... Similar to previous best
## Run 39 stress 0.1004721
## ... Procrustes: rmse 2.078947e-06 max resid 4.873866e-06
## ... Similar to previous best
## Run 40 stress 0.1004721
## ... New best solution
## ... Procrustes: rmse 2.819432e-07 max resid 5.825097e-07
## ... Similar to previous best
## Run 41 stress 0.1427047
## Run 42 stress 0.1004721
## ... Procrustes: rmse 7.641302e-06 max resid 2.097163e-05
## ... Similar to previous best
## Run 43 stress 0.1004721
## ... Procrustes: rmse 1.825069e-06 max resid 4.132303e-06
## ... Similar to previous best
## Run 44 stress 0.3578478
## Run 45 stress 0.1004721
## ... Procrustes: rmse 2.383723e-06 max resid 5.309489e-06
## ... Similar to previous best
## Run 46 stress 0.1004721
## ... Procrustes: rmse 3.532579e-06 max resid 9.928748e-06
## ... Similar to previous best
## Run 47 stress 0.1427047
## Run 48 stress 0.1004721
## ... Procrustes: rmse 3.211127e-06 max resid 8.681302e-06
## ... Similar to previous best
## Run 49 stress 0.1429816
## Run 50 stress 0.1004721
## ... Procrustes: rmse 3.61647e-06 max resid 1.01784e-05
## ... Similar to previous best
## Run 51 stress 0.1429819
## Run 52 stress 0.1004721
## ... New best solution
## ... Procrustes: rmse 1.237687e-06 max resid 3.480224e-06
## ... Similar to previous best
## Run 53 stress 0.1004721
## ... Procrustes: rmse 9.500415e-06 max resid 2.67487e-05
## ... Similar to previous best
## Run 54 stress 0.1004721
## ... Procrustes: rmse 3.161204e-06 max resid 8.972938e-06
## ... Similar to previous best
## Run 55 stress 0.1004721
## ... Procrustes: rmse 6.839594e-07 max resid 1.689962e-06
## ... Similar to previous best
## Run 56 stress 0.1427047
## Run 57 stress 0.1004721
## ... Procrustes: rmse 4.407486e-06 max resid 1.211983e-05
## ... Similar to previous best
## Run 58 stress 0.1427047
## Run 59 stress 0.1004721
## ... Procrustes: rmse 1.796656e-06 max resid 5.094202e-06
## ... Similar to previous best
## Run 60 stress 0.1004721
## ... Procrustes: rmse 5.069693e-06 max resid 1.382863e-05
## ... Similar to previous best
## Run 61 stress 0.1429818
## Run 62 stress 0.1004721
## ... Procrustes: rmse 3.529518e-06 max resid 8.906686e-06
## ... Similar to previous best
## Run 63 stress 0.1004721
## ... Procrustes: rmse 5.834074e-06 max resid 1.643692e-05
## ... Similar to previous best
## Run 64 stress 0.1004721
## ... Procrustes: rmse 4.29605e-06 max resid 1.203061e-05
## ... Similar to previous best
## Run 65 stress 0.1004721
## ... Procrustes: rmse 2.450324e-06 max resid 6.640265e-06
## ... Similar to previous best
## Run 66 stress 0.1427047
## Run 67 stress 0.1004721
## ... Procrustes: rmse 2.467317e-06 max resid 6.233374e-06
## ... Similar to previous best
## Run 68 stress 0.1004721
## ... Procrustes: rmse 4.319002e-06 max resid 1.175692e-05
## ... Similar to previous best
## Run 69 stress 0.1524177
## Run 70 stress 0.1004721
## ... Procrustes: rmse 1.097525e-06 max resid 2.149795e-06
## ... Similar to previous best
## Run 71 stress 0.1429816
## Run 72 stress 0.1429816
## Run 73 stress 0.3495564
## Run 74 stress 0.1004721
## ... Procrustes: rmse 2.069917e-06 max resid 5.590556e-06
## ... Similar to previous best
## Run 75 stress 0.1004721
## ... Procrustes: rmse 1.517109e-06 max resid 3.7189e-06
## ... Similar to previous best
## Run 76 stress 0.1004721
## ... Procrustes: rmse 1.012862e-05 max resid 2.783675e-05
## ... Similar to previous best
## Run 77 stress 0.1004721
## ... Procrustes: rmse 3.45892e-06 max resid 9.88289e-06
## ... Similar to previous best
## Run 78 stress 0.1004721
## ... Procrustes: rmse 9.590145e-07 max resid 2.542332e-06
## ... Similar to previous best
## Run 79 stress 0.1429819
## Run 80 stress 0.1004721
## ... Procrustes: rmse 3.942861e-06 max resid 9.676931e-06
## ... Similar to previous best
## Run 81 stress 0.1004721
## ... Procrustes: rmse 2.743332e-06 max resid 7.322949e-06
## ... Similar to previous best
## Run 82 stress 0.1427047
## Run 83 stress 0.1429817
## Run 84 stress 0.1004721
## ... Procrustes: rmse 3.28625e-06 max resid 9.274612e-06
## ... Similar to previous best
## Run 85 stress 0.1524177
## Run 86 stress 0.1004721
## ... Procrustes: rmse 1.48117e-06 max resid 3.924497e-06
## ... Similar to previous best
## Run 87 stress 0.1512114
## Run 88 stress 0.1004721
## ... Procrustes: rmse 1.741948e-06 max resid 4.894222e-06
## ... Similar to previous best
## Run 89 stress 0.1524178
## Run 90 stress 0.1004721
## ... Procrustes: rmse 6.808467e-06 max resid 1.917751e-05
## ... Similar to previous best
## Run 91 stress 0.1004721
## ... Procrustes: rmse 1.632724e-06 max resid 3.513423e-06
## ... Similar to previous best
## Run 92 stress 0.1004721
## ... Procrustes: rmse 6.967722e-06 max resid 1.879758e-05
## ... Similar to previous best
## Run 93 stress 0.1004721
## ... Procrustes: rmse 1.054822e-06 max resid 2.084007e-06
## ... Similar to previous best
## Run 94 stress 0.1004721
## ... Procrustes: rmse 2.715822e-06 max resid 7.640119e-06
## ... Similar to previous best
## Run 95 stress 0.1429819
## Run 96 stress 0.1429817
## Run 97 stress 0.1004721
## ... Procrustes: rmse 1.15717e-05 max resid 3.232902e-05
## ... Similar to previous best
## Run 98 stress 0.1004721
## ... Procrustes: rmse 1.774275e-06 max resid 4.704522e-06
## ... Similar to previous best
## Run 99 stress 0.1004721
## ... Procrustes: rmse 2.494462e-06 max resid 7.045316e-06
## ... Similar to previous best
## Run 100 stress 0.1004721
## ... Procrustes: rmse 2.758196e-06 max resid 6.482562e-06
## ... Similar to previous best
## Run 101 stress 0.1004721
## ... Procrustes: rmse 1.468761e-06 max resid 3.026613e-06
## ... Similar to previous best
## Run 102 stress 0.1004721
## ... Procrustes: rmse 1.116572e-06 max resid 2.952466e-06
## ... Similar to previous best
## Run 103 stress 0.1004721
## ... Procrustes: rmse 2.464439e-06 max resid 6.835892e-06
## ... Similar to previous best
## Run 104 stress 0.1004721
## ... Procrustes: rmse 1.671214e-06 max resid 3.436728e-06
## ... Similar to previous best
## Run 105 stress 0.1004721
## ... Procrustes: rmse 3.400087e-06 max resid 9.640243e-06
## ... Similar to previous best
## Run 106 stress 0.1004721
## ... Procrustes: rmse 4.35805e-06 max resid 1.226789e-05
## ... Similar to previous best
## Run 107 stress 0.1004721
## ... Procrustes: rmse 4.219863e-06 max resid 1.194594e-05
## ... Similar to previous best
## Run 108 stress 0.1427047
## Run 109 stress 0.1004721
## ... Procrustes: rmse 9.510263e-07 max resid 2.013971e-06
## ... Similar to previous best
## Run 110 stress 0.1004721
## ... Procrustes: rmse 3.885009e-06 max resid 1.099661e-05
## ... Similar to previous best
## Run 111 stress 0.1004721
## ... Procrustes: rmse 3.448719e-07 max resid 6.738636e-07
## ... Similar to previous best
## Run 112 stress 0.1004722
## ... Procrustes: rmse 1.288237e-05 max resid 3.0506e-05
## ... Similar to previous best
## Run 113 stress 0.1427047
## Run 114 stress 0.1004721
## ... Procrustes: rmse 1.763889e-06 max resid 4.964048e-06
## ... Similar to previous best
## Run 115 stress 0.1004722
## ... Procrustes: rmse 9.762645e-06 max resid 2.269809e-05
## ... Similar to previous best
## Run 116 stress 0.3495734
## Run 117 stress 0.1532428
## Run 118 stress 0.1004721
## ... Procrustes: rmse 1.05163e-06 max resid 2.610307e-06
## ... Similar to previous best
## Run 119 stress 0.1427047
## Run 120 stress 0.1004721
## ... Procrustes: rmse 1.141692e-05 max resid 2.915839e-05
## ... Similar to previous best
## Run 121 stress 0.1427047
## Run 122 stress 0.1427047
## Run 123 stress 0.1512113
## Run 124 stress 0.1004721
## ... Procrustes: rmse 2.647667e-06 max resid 7.418653e-06
## ... Similar to previous best
## Run 125 stress 0.1004721
## ... Procrustes: rmse 3.233557e-06 max resid 9.132302e-06
## ... Similar to previous best
## Run 126 stress 0.1004721
## ... Procrustes: rmse 4.081257e-06 max resid 1.176805e-05
## ... Similar to previous best
## Run 127 stress 0.1004721
## ... Procrustes: rmse 4.290723e-06 max resid 1.054698e-05
## ... Similar to previous best
## Run 128 stress 0.1427047
## Run 129 stress 0.1429816
## Run 130 stress 0.1004721
## ... Procrustes: rmse 4.394181e-06 max resid 1.097316e-05
## ... Similar to previous best
## Run 131 stress 0.1004721
## ... New best solution
## ... Procrustes: rmse 6.754423e-07 max resid 1.533606e-06
## ... Similar to previous best
## Run 132 stress 0.1004721
## ... Procrustes: rmse 1.594265e-06 max resid 4.500062e-06
## ... Similar to previous best
## Run 133 stress 0.3315178
## Run 134 stress 0.1004721
## ... Procrustes: rmse 2.703941e-06 max resid 7.518841e-06
## ... Similar to previous best
## Run 135 stress 0.1004721
## ... Procrustes: rmse 1.512767e-05 max resid 4.316804e-05
## ... Similar to previous best
## Run 136 stress 0.1004721
## ... Procrustes: rmse 2.143563e-06 max resid 5.886353e-06
## ... Similar to previous best
## Run 137 stress 0.1004721
## ... Procrustes: rmse 3.170207e-06 max resid 6.708987e-06
## ... Similar to previous best
## Run 138 stress 0.1004721
## ... Procrustes: rmse 6.51593e-06 max resid 1.817397e-05
## ... Similar to previous best
## Run 139 stress 0.1004721
## ... Procrustes: rmse 4.05091e-06 max resid 1.146363e-05
## ... Similar to previous best
## Run 140 stress 0.1004721
## ... Procrustes: rmse 1.754707e-06 max resid 3.858254e-06
## ... Similar to previous best
## Run 141 stress 0.1004721
## ... Procrustes: rmse 1.163525e-06 max resid 3.081634e-06
## ... Similar to previous best
## Run 142 stress 0.1004721
## ... Procrustes: rmse 7.996281e-06 max resid 2.259252e-05
## ... Similar to previous best
## Run 143 stress 0.1429816
## Run 144 stress 0.1004721
## ... Procrustes: rmse 8.017106e-07 max resid 1.425652e-06
## ... Similar to previous best
## Run 145 stress 0.1004721
## ... Procrustes: rmse 1.170802e-06 max resid 2.105504e-06
## ... Similar to previous best
## Run 146 stress 0.1004721
## ... Procrustes: rmse 2.123111e-05 max resid 6.070214e-05
## ... Similar to previous best
## Run 147 stress 0.1427047
## Run 148 stress 0.1004721
## ... Procrustes: rmse 1.91512e-06 max resid 5.073104e-06
## ... Similar to previous best
## Run 149 stress 0.1004721
## ... Procrustes: rmse 1.971399e-06 max resid 5.459595e-06
## ... Similar to previous best
## Run 150 stress 0.1004721
## ... Procrustes: rmse 1.587845e-06 max resid 3.691226e-06
## ... Similar to previous best
## Run 151 stress 0.1004722
## ... Procrustes: rmse 2.65528e-05 max resid 7.526046e-05
## ... Similar to previous best
## Run 152 stress 0.1004721
## ... Procrustes: rmse 3.512832e-06 max resid 7.212842e-06
## ... Similar to previous best
## Run 153 stress 0.1429818
## Run 154 stress 0.1004721
## ... Procrustes: rmse 1.239365e-06 max resid 3.125938e-06
## ... Similar to previous best
## Run 155 stress 0.1512113
## Run 156 stress 0.1429819
## Run 157 stress 0.1429816
## Run 158 stress 0.1004721
## ... Procrustes: rmse 5.762943e-06 max resid 1.256513e-05
## ... Similar to previous best
## Run 159 stress 0.1004721
## ... Procrustes: rmse 2.976904e-06 max resid 6.891116e-06
## ... Similar to previous best
## Run 160 stress 0.1004721
## ... Procrustes: rmse 4.875992e-06 max resid 1.359373e-05
## ... Similar to previous best
## Run 161 stress 0.1004721
## ... Procrustes: rmse 3.467948e-06 max resid 8.625877e-06
## ... Similar to previous best
## Run 162 stress 0.1004721
## ... Procrustes: rmse 3.851751e-06 max resid 1.075266e-05
## ... Similar to previous best
## Run 163 stress 0.3471818
## Run 164 stress 0.1004721
## ... Procrustes: rmse 1.348693e-06 max resid 3.095088e-06
## ... Similar to previous best
## Run 165 stress 0.1524178
## Run 166 stress 0.1004721
## ... Procrustes: rmse 5.312554e-06 max resid 1.465009e-05
## ... Similar to previous best
## Run 167 stress 0.1427047
## Run 168 stress 0.1004721
## ... Procrustes: rmse 2.400491e-06 max resid 6.489689e-06
## ... Similar to previous best
## Run 169 stress 0.1429816
## Run 170 stress 0.1004721
## ... Procrustes: rmse 1.100476e-06 max resid 2.389831e-06
## ... Similar to previous best
## Run 171 stress 0.1004721
## ... Procrustes: rmse 3.453413e-06 max resid 8.922668e-06
## ... Similar to previous best
## Run 172 stress 0.1004721
## ... Procrustes: rmse 1.151302e-06 max resid 2.941649e-06
## ... Similar to previous best
## Run 173 stress 0.1004721
## ... Procrustes: rmse 5.554261e-06 max resid 1.548007e-05
## ... Similar to previous best
## Run 174 stress 0.1524176
## Run 175 stress 0.1004721
## ... Procrustes: rmse 3.799531e-06 max resid 9.389909e-06
## ... Similar to previous best
## Run 176 stress 0.1004721
## ... Procrustes: rmse 9.235203e-06 max resid 2.63046e-05
## ... Similar to previous best
## Run 177 stress 0.1004721
## ... Procrustes: rmse 1.742139e-06 max resid 3.575223e-06
## ... Similar to previous best
## Run 178 stress 0.1524796
## Run 179 stress 0.1004721
## ... Procrustes: rmse 1.417144e-06 max resid 3.405753e-06
## ... Similar to previous best
## Run 180 stress 0.1004721
## ... Procrustes: rmse 4.466822e-06 max resid 1.269447e-05
## ... Similar to previous best
## Run 181 stress 0.1429816
## Run 182 stress 0.1004721
## ... Procrustes: rmse 3.537487e-06 max resid 9.959901e-06
## ... Similar to previous best
## Run 183 stress 0.1427047
## Run 184 stress 0.1004721
## ... Procrustes: rmse 4.027508e-06 max resid 9.966438e-06
## ... Similar to previous best
## Run 185 stress 0.1004721
## ... Procrustes: rmse 2.021523e-06 max resid 4.782067e-06
## ... Similar to previous best
## Run 186 stress 0.1004721
## ... Procrustes: rmse 3.474069e-06 max resid 9.726645e-06
## ... Similar to previous best
## Run 187 stress 0.1427047
## Run 188 stress 0.1004721
## ... Procrustes: rmse 8.999663e-07 max resid 2.305724e-06
## ... Similar to previous best
## Run 189 stress 0.1004721
## ... Procrustes: rmse 3.045138e-06 max resid 8.411433e-06
## ... Similar to previous best
## Run 190 stress 0.1004721
## ... Procrustes: rmse 1.394854e-06 max resid 2.743348e-06
## ... Similar to previous best
## Run 191 stress 0.1004721
## ... Procrustes: rmse 1.140969e-05 max resid 3.192817e-05
## ... Similar to previous best
## Run 192 stress 0.1004721
## ... Procrustes: rmse 2.036983e-06 max resid 3.976334e-06
## ... Similar to previous best
## Run 193 stress 0.1004721
## ... Procrustes: rmse 1.487096e-06 max resid 3.218815e-06
## ... Similar to previous best
## Run 194 stress 0.1004721
## ... Procrustes: rmse 3.808664e-06 max resid 9.383533e-06
## ... Similar to previous best
## Run 195 stress 0.1004721
## ... Procrustes: rmse 1.300109e-06 max resid 3.40879e-06
## ... Similar to previous best
## Run 196 stress 0.1004721
## ... Procrustes: rmse 5.23411e-06 max resid 1.463071e-05
## ... Similar to previous best
## Run 197 stress 0.1004721
## ... Procrustes: rmse 3.326992e-06 max resid 7.007443e-06
## ... Similar to previous best
## Run 198 stress 0.3151877
## Run 199 stress 0.1004721
## ... Procrustes: rmse 1.346369e-06 max resid 3.552618e-06
## ... Similar to previous best
## Run 200 stress 0.1004721
## ... Procrustes: rmse 4.108909e-06 max resid 1.129125e-05
## ... Similar to previous best
## Run 201 stress 0.1004721
## ... Procrustes: rmse 4.317843e-06 max resid 1.108299e-05
## ... Similar to previous best
## Run 202 stress 0.1004721
## ... Procrustes: rmse 5.406639e-06 max resid 1.522567e-05
## ... Similar to previous best
## Run 203 stress 0.1004721
## ... Procrustes: rmse 2.497296e-06 max resid 7.063309e-06
## ... Similar to previous best
## Run 204 stress 0.1004721
## ... Procrustes: rmse 1.119515e-06 max resid 1.943808e-06
## ... Similar to previous best
## Run 205 stress 0.1004721
## ... Procrustes: rmse 1.119969e-06 max resid 2.892787e-06
## ... Similar to previous best
## Run 206 stress 0.1532429
## Run 207 stress 0.1429818
## Run 208 stress 0.1429815
## Run 209 stress 0.1004721
## ... Procrustes: rmse 4.505876e-06 max resid 1.160799e-05
## ... Similar to previous best
## Run 210 stress 0.1004721
## ... Procrustes: rmse 3.859953e-06 max resid 1.061342e-05
## ... Similar to previous best
## Run 211 stress 0.1512113
## Run 212 stress 0.1524176
## Run 213 stress 0.1004721
## ... Procrustes: rmse 7.899222e-07 max resid 1.985794e-06
## ... Similar to previous best
## Run 214 stress 0.1004721
## ... Procrustes: rmse 9.626378e-07 max resid 2.13927e-06
## ... Similar to previous best
## Run 215 stress 0.1004721
## ... Procrustes: rmse 3.812162e-06 max resid 1.062899e-05
## ... Similar to previous best
## Run 216 stress 0.1427047
## Run 217 stress 0.1004721
## ... Procrustes: rmse 2.078214e-06 max resid 5.203776e-06
## ... Similar to previous best
## Run 218 stress 0.1004721
## ... Procrustes: rmse 2.143989e-06 max resid 5.968047e-06
## ... Similar to previous best
## Run 219 stress 0.1004721
## ... Procrustes: rmse 9.128449e-07 max resid 1.776072e-06
## ... Similar to previous best
## Run 220 stress 0.1004721
## ... Procrustes: rmse 2.930762e-06 max resid 6.505583e-06
## ... Similar to previous best
## Run 221 stress 0.1429818
## Run 222 stress 0.1429816
## Run 223 stress 0.1004721
## ... Procrustes: rmse 1.39145e-06 max resid 3.731509e-06
## ... Similar to previous best
## Run 224 stress 0.1004721
## ... Procrustes: rmse 4.466563e-06 max resid 1.234418e-05
## ... Similar to previous best
## Run 225 stress 0.1004721
## ... Procrustes: rmse 2.769363e-06 max resid 7.378193e-06
## ... Similar to previous best
## Run 226 stress 0.1004721
## ... Procrustes: rmse 8.938139e-06 max resid 2.534035e-05
## ... Similar to previous best
## Run 227 stress 0.1004721
## ... Procrustes: rmse 2.560514e-06 max resid 5.59505e-06
## ... Similar to previous best
## Run 228 stress 0.1429819
## Run 229 stress 0.1004721
## ... Procrustes: rmse 1.986998e-06 max resid 5.524016e-06
## ... Similar to previous best
## Run 230 stress 0.1004721
## ... Procrustes: rmse 3.286378e-06 max resid 8.013039e-06
## ... Similar to previous best
## Run 231 stress 0.1429818
## Run 232 stress 0.1004721
## ... Procrustes: rmse 2.540031e-06 max resid 6.5718e-06
## ... Similar to previous best
## Run 233 stress 0.3578483
## Run 234 stress 0.1004721
## ... Procrustes: rmse 2.196266e-06 max resid 6.044588e-06
## ... Similar to previous best
## Run 235 stress 0.1004721
## ... Procrustes: rmse 4.637412e-06 max resid 1.057479e-05
## ... Similar to previous best
## Run 236 stress 0.1004721
## ... Procrustes: rmse 1.646586e-06 max resid 4.176077e-06
## ... Similar to previous best
## Run 237 stress 0.1004721
## ... Procrustes: rmse 2.033184e-06 max resid 5.560107e-06
## ... Similar to previous best
## Run 238 stress 0.1004721
## ... Procrustes: rmse 1.683238e-06 max resid 4.034825e-06
## ... Similar to previous best
## Run 239 stress 0.1532428
## Run 240 stress 0.1004721
## ... Procrustes: rmse 2.559473e-06 max resid 6.491822e-06
## ... Similar to previous best
## Run 241 stress 0.142982
## Run 242 stress 0.1524176
## Run 243 stress 0.1004721
## ... Procrustes: rmse 2.170362e-06 max resid 4.878143e-06
## ... Similar to previous best
## Run 244 stress 0.1004721
## ... Procrustes: rmse 3.199517e-06 max resid 8.953741e-06
## ... Similar to previous best
## Run 245 stress 0.3108666
## Run 246 stress 0.1004721
## ... Procrustes: rmse 1.82256e-06 max resid 4.839727e-06
## ... Similar to previous best
## Run 247 stress 0.1004721
## ... Procrustes: rmse 3.937562e-06 max resid 1.075073e-05
## ... Similar to previous best
## Run 248 stress 0.1004721
## ... Procrustes: rmse 2.67833e-06 max resid 7.334719e-06
## ... Similar to previous best
## Run 249 stress 0.1004721
## ... Procrustes: rmse 3.344266e-06 max resid 9.44321e-06
## ... Similar to previous best
## Run 250 stress 0.1004721
## ... Procrustes: rmse 8.455764e-07 max resid 1.590289e-06
## ... Similar to previous best
## Run 251 stress 0.1004721
## ... Procrustes: rmse 1.860571e-06 max resid 3.891127e-06
## ... Similar to previous best
## Run 252 stress 0.1512113
## Run 253 stress 0.1004721
## ... Procrustes: rmse 2.101437e-06 max resid 5.011565e-06
## ... Similar to previous best
## Run 254 stress 0.1004721
## ... Procrustes: rmse 9.460898e-06 max resid 2.710399e-05
## ... Similar to previous best
## Run 255 stress 0.1429818
## Run 256 stress 0.1429822
## Run 257 stress 0.1524796
## Run 258 stress 0.1429815
## Run 259 stress 0.1512113
## Run 260 stress 0.1004721
## ... Procrustes: rmse 9.184829e-07 max resid 2.231773e-06
## ... Similar to previous best
## Run 261 stress 0.1004721
## ... Procrustes: rmse 2.056063e-06 max resid 4.549275e-06
## ... Similar to previous best
## Run 262 stress 0.1004721
## ... Procrustes: rmse 3.959906e-06 max resid 9.658973e-06
## ... Similar to previous best
## Run 263 stress 0.1004721
## ... Procrustes: rmse 1.634511e-06 max resid 4.32393e-06
## ... Similar to previous best
## Run 264 stress 0.1004721
## ... Procrustes: rmse 1.807894e-06 max resid 5.042819e-06
## ... Similar to previous best
## Run 265 stress 0.1004721
## ... Procrustes: rmse 1.866486e-06 max resid 4.77252e-06
## ... Similar to previous best
## Run 266 stress 0.1429819
## Run 267 stress 0.1004721
## ... New best solution
## ... Procrustes: rmse 4.02686e-07 max resid 7.447426e-07
## ... Similar to previous best
## Run 268 stress 0.1429818
## Run 269 stress 0.1429819
## Run 270 stress 0.1429822
## Run 271 stress 0.1004721
## ... Procrustes: rmse 9.35778e-07 max resid 1.975415e-06
## ... Similar to previous best
## Run 272 stress 0.1004721
## ... Procrustes: rmse 2.601327e-06 max resid 7.392125e-06
## ... Similar to previous best
## Run 273 stress 0.1427047
## Run 274 stress 0.1427047
## Run 275 stress 0.1004721
## ... Procrustes: rmse 2.616101e-06 max resid 5.412738e-06
## ... Similar to previous best
## Run 276 stress 0.1427047
## Run 277 stress 0.1429816
## Run 278 stress 0.1004721
## ... Procrustes: rmse 3.938095e-06 max resid 1.124817e-05
## ... Similar to previous best
## Run 279 stress 0.1004721
## ... Procrustes: rmse 2.95371e-06 max resid 7.365773e-06
## ... Similar to previous best
## Run 280 stress 0.1004721
## ... Procrustes: rmse 6.182122e-07 max resid 1.299736e-06
## ... Similar to previous best
## Run 281 stress 0.1004721
## ... Procrustes: rmse 3.729907e-06 max resid 1.062813e-05
## ... Similar to previous best
## Run 282 stress 0.1004721
## ... Procrustes: rmse 3.16072e-06 max resid 8.909175e-06
## ... Similar to previous best
## Run 283 stress 0.1004721
## ... Procrustes: rmse 3.140448e-06 max resid 8.968182e-06
## ... Similar to previous best
## Run 284 stress 0.1004721
## ... Procrustes: rmse 3.315871e-06 max resid 7.14524e-06
## ... Similar to previous best
## Run 285 stress 0.1512113
## Run 286 stress 0.1004721
## ... Procrustes: rmse 1.636489e-06 max resid 3.412304e-06
## ... Similar to previous best
## Run 287 stress 0.1004721
## ... Procrustes: rmse 1.767913e-06 max resid 4.665704e-06
## ... Similar to previous best
## Run 288 stress 0.1004721
## ... Procrustes: rmse 1.860076e-06 max resid 4.623625e-06
## ... Similar to previous best
## Run 289 stress 0.1004721
## ... Procrustes: rmse 4.162154e-06 max resid 9.435159e-06
## ... Similar to previous best
## Run 290 stress 0.1004721
## ... Procrustes: rmse 1.925943e-06 max resid 5.388943e-06
## ... Similar to previous best
## Run 291 stress 0.1004721
## ... Procrustes: rmse 2.66358e-06 max resid 5.699042e-06
## ... Similar to previous best
## Run 292 stress 0.1004721
## ... Procrustes: rmse 2.991769e-06 max resid 7.444095e-06
## ... Similar to previous best
## Run 293 stress 0.1004721
## ... Procrustes: rmse 3.683871e-06 max resid 1.040705e-05
## ... Similar to previous best
## Run 294 stress 0.152418
## Run 295 stress 0.1004721
## ... Procrustes: rmse 3.872181e-06 max resid 9.842289e-06
## ... Similar to previous best
## Run 296 stress 0.1004721
## ... Procrustes: rmse 2.304644e-06 max resid 6.500661e-06
## ... Similar to previous best
## Run 297 stress 0.1004721
## ... Procrustes: rmse 9.150402e-07 max resid 1.788771e-06
## ... Similar to previous best
## Run 298 stress 0.1004721
## ... Procrustes: rmse 1.87056e-06 max resid 5.353006e-06
## ... Similar to previous best
## Run 299 stress 0.1004721
## ... Procrustes: rmse 3.565105e-06 max resid 9.999709e-06
## ... Similar to previous best
## Run 300 stress 0.1512113
## Run 301 stress 0.1004721
## ... Procrustes: rmse 1.693622e-06 max resid 4.670218e-06
## ... Similar to previous best
## Run 302 stress 0.1427047
## Run 303 stress 0.1004721
## ... Procrustes: rmse 4.099932e-06 max resid 1.12221e-05
## ... Similar to previous best
## Run 304 stress 0.1524178
## Run 305 stress 0.1004721
## ... Procrustes: rmse 2.707179e-06 max resid 7.383583e-06
## ... Similar to previous best
## Run 306 stress 0.1004721
## ... Procrustes: rmse 1.166465e-06 max resid 3.28232e-06
## ... Similar to previous best
## Run 307 stress 0.1004721
## ... Procrustes: rmse 3.505657e-06 max resid 7.587234e-06
## ... Similar to previous best
## Run 308 stress 0.1427047
## Run 309 stress 0.1512115
## Run 310 stress 0.1427047
## Run 311 stress 0.1004721
## ... Procrustes: rmse 2.477491e-06 max resid 6.131224e-06
## ... Similar to previous best
## Run 312 stress 0.152418
## Run 313 stress 0.1004721
## ... Procrustes: rmse 3.250164e-06 max resid 7.711477e-06
## ... Similar to previous best
## Run 314 stress 0.1524175
## Run 315 stress 0.1532428
## Run 316 stress 0.1004721
## ... Procrustes: rmse 6.427578e-06 max resid 1.83481e-05
## ... Similar to previous best
## Run 317 stress 0.1429818
## Run 318 stress 0.1004721
## ... Procrustes: rmse 4.553945e-06 max resid 1.27671e-05
## ... Similar to previous best
## Run 319 stress 0.1004721
## ... Procrustes: rmse 1.374841e-06 max resid 2.368964e-06
## ... Similar to previous best
## Run 320 stress 0.1004721
## ... Procrustes: rmse 2.783915e-06 max resid 7.115811e-06
## ... Similar to previous best
## Run 321 stress 0.1004721
## ... Procrustes: rmse 1.030025e-05 max resid 2.871901e-05
## ... Similar to previous best
## Run 322 stress 0.1004721
## ... Procrustes: rmse 2.212333e-06 max resid 5.160446e-06
## ... Similar to previous best
## Run 323 stress 0.1004721
## ... Procrustes: rmse 1.078559e-05 max resid 3.019283e-05
## ... Similar to previous best
## Run 324 stress 0.1532428
## Run 325 stress 0.1004721
## ... Procrustes: rmse 1.409997e-06 max resid 3.410134e-06
## ... Similar to previous best
## Run 326 stress 0.1004721
## ... Procrustes: rmse 3.851047e-06 max resid 1.099577e-05
## ... Similar to previous best
## Run 327 stress 0.1004721
## ... Procrustes: rmse 4.337918e-06 max resid 1.214426e-05
## ... Similar to previous best
## Run 328 stress 0.1004721
## ... Procrustes: rmse 3.803445e-06 max resid 1.079418e-05
## ... Similar to previous best
## Run 329 stress 0.1004721
## ... Procrustes: rmse 1.480034e-06 max resid 3.760446e-06
## ... Similar to previous best
## Run 330 stress 0.1429819
## Run 331 stress 0.1004721
## ... Procrustes: rmse 3.129837e-06 max resid 8.877329e-06
## ... Similar to previous best
## Run 332 stress 0.1427047
## Run 333 stress 0.1427047
## Run 334 stress 0.1004721
## ... Procrustes: rmse 1.210307e-06 max resid 2.708882e-06
## ... Similar to previous best
## Run 335 stress 0.1427047
## Run 336 stress 0.1429816
## Run 337 stress 0.1427047
## Run 338 stress 0.1004721
## ... Procrustes: rmse 1.649218e-06 max resid 3.908317e-06
## ... Similar to previous best
## Run 339 stress 0.1429816
## Run 340 stress 0.1004721
## ... Procrustes: rmse 4.035926e-06 max resid 1.143608e-05
## ... Similar to previous best
## Run 341 stress 0.1004721
## ... Procrustes: rmse 3.875835e-06 max resid 1.044704e-05
## ... Similar to previous best
## Run 342 stress 0.1004721
## ... Procrustes: rmse 9.562569e-07 max resid 2.03364e-06
## ... Similar to previous best
## Run 343 stress 0.1004721
## ... Procrustes: rmse 4.293371e-06 max resid 1.227375e-05
## ... Similar to previous best
## Run 344 stress 0.1004721
## ... Procrustes: rmse 2.771819e-06 max resid 7.802403e-06
## ... Similar to previous best
## Run 345 stress 0.1524176
## Run 346 stress 0.1004721
## ... Procrustes: rmse 4.004491e-06 max resid 1.10725e-05
## ... Similar to previous best
## Run 347 stress 0.1427047
## Run 348 stress 0.1512113
## Run 349 stress 0.1004721
## ... Procrustes: rmse 4.20057e-06 max resid 1.136795e-05
## ... Similar to previous best
## Run 350 stress 0.3578441
## Run 351 stress 0.1512113
## Run 352 stress 0.1004721
## ... Procrustes: rmse 2.127745e-06 max resid 5.872781e-06
## ... Similar to previous best
## Run 353 stress 0.1532429
## Run 354 stress 0.1004721
## ... Procrustes: rmse 4.757821e-06 max resid 1.354773e-05
## ... Similar to previous best
## Run 355 stress 0.1429816
## Run 356 stress 0.1004721
## ... Procrustes: rmse 1.158628e-06 max resid 2.946599e-06
## ... Similar to previous best
## Run 357 stress 0.1524181
## Run 358 stress 0.1004721
## ... Procrustes: rmse 2.955658e-06 max resid 7.493241e-06
## ... Similar to previous best
## Run 359 stress 0.1524179
## Run 360 stress 0.1004721
## ... Procrustes: rmse 6.264947e-07 max resid 1.518598e-06
## ... Similar to previous best
## Run 361 stress 0.1512115
## Run 362 stress 0.1004721
## ... Procrustes: rmse 2.971644e-06 max resid 8.388485e-06
## ... Similar to previous best
## Run 363 stress 0.1004721
## ... Procrustes: rmse 6.339814e-07 max resid 1.218907e-06
## ... Similar to previous best
## Run 364 stress 0.1004721
## ... Procrustes: rmse 2.118594e-06 max resid 6.075766e-06
## ... Similar to previous best
## Run 365 stress 0.1004721
## ... Procrustes: rmse 4.212976e-06 max resid 1.207103e-05
## ... Similar to previous best
## Run 366 stress 0.1429818
## Run 367 stress 0.1524178
## Run 368 stress 0.1004721
## ... Procrustes: rmse 3.164877e-06 max resid 9.040988e-06
## ... Similar to previous best
## Run 369 stress 0.1004721
## ... Procrustes: rmse 5.28691e-06 max resid 1.281265e-05
## ... Similar to previous best
## Run 370 stress 0.1004721
## ... Procrustes: rmse 1.501224e-06 max resid 3.94928e-06
## ... Similar to previous best
## Run 371 stress 0.1004721
## ... Procrustes: rmse 3.245434e-07 max resid 7.234604e-07
## ... Similar to previous best
## Run 372 stress 0.1524177
## Run 373 stress 0.1004721
## ... Procrustes: rmse 2.166313e-06 max resid 5.684883e-06
## ... Similar to previous best
## Run 374 stress 0.1427047
## Run 375 stress 0.1004721
## ... Procrustes: rmse 3.430105e-06 max resid 9.085139e-06
## ... Similar to previous best
## Run 376 stress 0.1004721
## ... Procrustes: rmse 1.1918e-06 max resid 2.997723e-06
## ... Similar to previous best
## Run 377 stress 0.1004721
## ... Procrustes: rmse 1.262705e-06 max resid 3.546463e-06
## ... Similar to previous best
## Run 378 stress 0.3578479
## Run 379 stress 0.1004721
## ... Procrustes: rmse 5.299905e-06 max resid 1.476529e-05
## ... Similar to previous best
## Run 380 stress 0.1004721
## ... Procrustes: rmse 1.842268e-06 max resid 5.196282e-06
## ... Similar to previous best
## Run 381 stress 0.1004721
## ... Procrustes: rmse 8.271055e-07 max resid 1.974154e-06
## ... Similar to previous best
## Run 382 stress 0.1004721
## ... Procrustes: rmse 1.340815e-06 max resid 3.696932e-06
## ... Similar to previous best
## Run 383 stress 0.1004721
## ... Procrustes: rmse 3.169247e-06 max resid 8.731027e-06
## ... Similar to previous best
## Run 384 stress 0.1004721
## ... Procrustes: rmse 8.260208e-06 max resid 2.074549e-05
## ... Similar to previous best
## Run 385 stress 0.1429822
## Run 386 stress 0.1004721
## ... Procrustes: rmse 1.362668e-06 max resid 3.677049e-06
## ... Similar to previous best
## Run 387 stress 0.1427047
## Run 388 stress 0.1004721
## ... Procrustes: rmse 4.199704e-06 max resid 9.705149e-06
## ... Similar to previous best
## Run 389 stress 0.1429819
## Run 390 stress 0.1004721
## ... Procrustes: rmse 9.625556e-06 max resid 2.74616e-05
## ... Similar to previous best
## Run 391 stress 0.1427047
## Run 392 stress 0.1427047
## Run 393 stress 0.1004721
## ... Procrustes: rmse 4.049461e-06 max resid 1.145424e-05
## ... Similar to previous best
## Run 394 stress 0.1004721
## ... Procrustes: rmse 5.417521e-07 max resid 1.306148e-06
## ... Similar to previous best
## Run 395 stress 0.1524178
## Run 396 stress 0.1004721
## ... Procrustes: rmse 3.554854e-06 max resid 9.980253e-06
## ... Similar to previous best
## Run 397 stress 0.1004721
## ... Procrustes: rmse 1.649189e-06 max resid 4.718699e-06
## ... Similar to previous best
## Run 398 stress 0.1004721
## ... Procrustes: rmse 1.800008e-06 max resid 3.920382e-06
## ... Similar to previous best
## Run 399 stress 0.1004721
## ... Procrustes: rmse 4.004515e-06 max resid 1.133723e-05
## ... Similar to previous best
## Run 400 stress 0.1004721
## ... Procrustes: rmse 8.063675e-06 max resid 2.253947e-05
## ... Similar to previous best
## Run 401 stress 0.1004721
## ... Procrustes: rmse 2.954209e-06 max resid 8.096571e-06
## ... Similar to previous best
## Run 402 stress 0.1004721
## ... Procrustes: rmse 8.517902e-07 max resid 1.907573e-06
## ... Similar to previous best
## Run 403 stress 0.1004721
## ... Procrustes: rmse 5.357491e-06 max resid 1.498475e-05
## ... Similar to previous best
## Run 404 stress 0.1004721
## ... Procrustes: rmse 3.130896e-06 max resid 8.398818e-06
## ... Similar to previous best
## Run 405 stress 0.1004721
## ... Procrustes: rmse 1.701671e-06 max resid 3.691539e-06
## ... Similar to previous best
## Run 406 stress 0.1004721
## ... Procrustes: rmse 5.283387e-07 max resid 1.065616e-06
## ... Similar to previous best
## Run 407 stress 0.1004721
## ... Procrustes: rmse 1.897825e-06 max resid 4.943013e-06
## ... Similar to previous best
## Run 408 stress 0.1004721
## ... Procrustes: rmse 2.409424e-06 max resid 5.291258e-06
## ... Similar to previous best
## Run 409 stress 0.1429816
## Run 410 stress 0.1004721
## ... Procrustes: rmse 4.232138e-06 max resid 1.143443e-05
## ... Similar to previous best
## Run 411 stress 0.1524181
## Run 412 stress 0.1524176
## Run 413 stress 0.1512115
## Run 414 stress 0.1004721
## ... Procrustes: rmse 2.831162e-06 max resid 7.261606e-06
## ... Similar to previous best
## Run 415 stress 0.1004721
## ... Procrustes: rmse 8.18431e-07 max resid 2.197907e-06
## ... Similar to previous best
## Run 416 stress 0.1429816
## Run 417 stress 0.1004721
## ... Procrustes: rmse 9.484462e-07 max resid 1.361738e-06
## ... Similar to previous best
## Run 418 stress 0.1429817
## Run 419 stress 0.1004721
## ... Procrustes: rmse 2.02876e-06 max resid 4.193628e-06
## ... Similar to previous best
## Run 420 stress 0.1004721
## ... Procrustes: rmse 1.923046e-06 max resid 4.418099e-06
## ... Similar to previous best
## Run 421 stress 0.1512113
## Run 422 stress 0.1427047
## Run 423 stress 0.1429816
## Run 424 stress 0.1429817
## Run 425 stress 0.1427047
## Run 426 stress 0.1004721
## ... Procrustes: rmse 3.085175e-06 max resid 6.918795e-06
## ... Similar to previous best
## Run 427 stress 0.1532428
## Run 428 stress 0.1004721
## ... Procrustes: rmse 3.733783e-06 max resid 1.047001e-05
## ... Similar to previous best
## Run 429 stress 0.1429817
## Run 430 stress 0.1004721
## ... Procrustes: rmse 1.346469e-06 max resid 3.881231e-06
## ... Similar to previous best
## Run 431 stress 0.1004721
## ... Procrustes: rmse 1.445561e-06 max resid 3.884378e-06
## ... Similar to previous best
## Run 432 stress 0.1004721
## ... Procrustes: rmse 4.025645e-06 max resid 1.072022e-05
## ... Similar to previous best
## Run 433 stress 0.1004721
## ... Procrustes: rmse 1.381263e-06 max resid 3.563369e-06
## ... Similar to previous best
## Run 434 stress 0.1004721
## ... Procrustes: rmse 1.245098e-06 max resid 3.483805e-06
## ... Similar to previous best
## Run 435 stress 0.1004721
## ... Procrustes: rmse 2.436905e-06 max resid 6.478072e-06
## ... Similar to previous best
## Run 436 stress 0.1004721
## ... Procrustes: rmse 5.425772e-06 max resid 1.464646e-05
## ... Similar to previous best
## Run 437 stress 0.1004721
## ... Procrustes: rmse 1.418593e-06 max resid 3.413044e-06
## ... Similar to previous best
## Run 438 stress 0.1004721
## ... Procrustes: rmse 1.363651e-06 max resid 3.669386e-06
## ... Similar to previous best
## Run 439 stress 0.1004721
## ... Procrustes: rmse 3.520181e-07 max resid 7.232769e-07
## ... Similar to previous best
## Run 440 stress 0.1004721
## ... Procrustes: rmse 5.646911e-06 max resid 1.456706e-05
## ... Similar to previous best
## Run 441 stress 0.1427047
## Run 442 stress 0.142982
## Run 443 stress 0.1429819
## Run 444 stress 0.1004721
## ... Procrustes: rmse 1.878623e-06 max resid 5.320877e-06
## ... Similar to previous best
## Run 445 stress 0.1004721
## ... Procrustes: rmse 1.873868e-06 max resid 5.007386e-06
## ... Similar to previous best
## Run 446 stress 0.1512113
## Run 447 stress 0.1004721
## ... Procrustes: rmse 3.645026e-06 max resid 1.019922e-05
## ... Similar to previous best
## Run 448 stress 0.1524178
## Run 449 stress 0.1429818
## Run 450 stress 0.1004721
## ... Procrustes: rmse 3.601048e-06 max resid 1.001412e-05
## ... Similar to previous best
## Run 451 stress 0.1512114
## Run 452 stress 0.1524796
## Run 453 stress 0.1004721
## ... Procrustes: rmse 9.120651e-06 max resid 2.282377e-05
## ... Similar to previous best
## Run 454 stress 0.1004721
## ... Procrustes: rmse 4.110526e-06 max resid 1.151241e-05
## ... Similar to previous best
## Run 455 stress 0.1004721
## ... Procrustes: rmse 7.244893e-06 max resid 1.576638e-05
## ... Similar to previous best
## Run 456 stress 0.1004721
## ... Procrustes: rmse 1.991996e-06 max resid 5.175922e-06
## ... Similar to previous best
## Run 457 stress 0.1004721
## ... Procrustes: rmse 3.380523e-06 max resid 9.433621e-06
## ... Similar to previous best
## Run 458 stress 0.142982
## Run 459 stress 0.1004721
## ... Procrustes: rmse 4.451401e-06 max resid 1.260126e-05
## ... Similar to previous best
## Run 460 stress 0.1429818
## Run 461 stress 0.1004721
## ... Procrustes: rmse 6.53713e-07 max resid 1.455925e-06
## ... Similar to previous best
## Run 462 stress 0.152418
## Run 463 stress 0.1524796
## Run 464 stress 0.1004721
## ... Procrustes: rmse 3.799155e-06 max resid 1.065137e-05
## ... Similar to previous best
## Run 465 stress 0.1004721
## ... Procrustes: rmse 5.161659e-06 max resid 1.436953e-05
## ... Similar to previous best
## Run 466 stress 0.1004721
## ... Procrustes: rmse 2.920239e-06 max resid 7.526611e-06
## ... Similar to previous best
## Run 467 stress 0.1004721
## ... Procrustes: rmse 1.551771e-06 max resid 3.779973e-06
## ... Similar to previous best
## Run 468 stress 0.1004721
## ... Procrustes: rmse 2.197205e-06 max resid 6.245422e-06
## ... Similar to previous best
## Run 469 stress 0.142982
## Run 470 stress 0.1004721
## ... Procrustes: rmse 1.039807e-06 max resid 2.654597e-06
## ... Similar to previous best
## Run 471 stress 0.1004721
## ... Procrustes: rmse 3.294262e-06 max resid 9.340308e-06
## ... Similar to previous best
## Run 472 stress 0.1429817
## Run 473 stress 0.1427047
## Run 474 stress 0.1427047
## Run 475 stress 0.1004721
## ... Procrustes: rmse 8.181306e-06 max resid 2.305648e-05
## ... Similar to previous best
## Run 476 stress 0.1427047
## Run 477 stress 0.1004721
## ... Procrustes: rmse 7.130127e-06 max resid 2.024441e-05
## ... Similar to previous best
## Run 478 stress 0.1004721
## ... Procrustes: rmse 4.607721e-06 max resid 1.270619e-05
## ... Similar to previous best
## Run 479 stress 0.1524178
## Run 480 stress 0.1429818
## Run 481 stress 0.1004721
## ... Procrustes: rmse 1.873525e-06 max resid 4.712319e-06
## ... Similar to previous best
## Run 482 stress 0.1512114
## Run 483 stress 0.1004721
## ... Procrustes: rmse 7.852479e-06 max resid 1.557231e-05
## ... Similar to previous best
## Run 484 stress 0.1004721
## ... Procrustes: rmse 3.641953e-06 max resid 7.942452e-06
## ... Similar to previous best
## Run 485 stress 0.3017596
## Run 486 stress 0.1524176
## Run 487 stress 0.1004721
## ... Procrustes: rmse 1.509379e-06 max resid 3.142378e-06
## ... Similar to previous best
## Run 488 stress 0.1004721
## ... Procrustes: rmse 1.066679e-06 max resid 2.334279e-06
## ... Similar to previous best
## Run 489 stress 0.1004721
## ... Procrustes: rmse 1.497575e-06 max resid 3.289871e-06
## ... Similar to previous best
## Run 490 stress 0.1004721
## ... Procrustes: rmse 2.903611e-06 max resid 6.372272e-06
## ... Similar to previous best
## Run 491 stress 0.1004721
## ... Procrustes: rmse 3.145355e-06 max resid 8.429215e-06
## ... Similar to previous best
## Run 492 stress 0.1004721
## ... Procrustes: rmse 8.841246e-07 max resid 2.420365e-06
## ... Similar to previous best
## Run 493 stress 0.1427047
## Run 494 stress 0.1427047
## Run 495 stress 0.1004721
## ... Procrustes: rmse 3.341144e-06 max resid 9.400447e-06
## ... Similar to previous best
## Run 496 stress 0.1004721
## ... Procrustes: rmse 6.374299e-06 max resid 1.747625e-05
## ... Similar to previous best
## Run 497 stress 0.1429818
## Run 498 stress 0.1427047
## Run 499 stress 0.1429816
## Run 500 stress 0.1427047
## *** Best solution repeated 145 times# Stratified lakes and ocean sites
pdso_NMDS <- metaMDS(pdso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.05744284
## Run 1 stress 0.05440995
## ... New best solution
## ... Procrustes: rmse 0.0651015 max resid 0.131145
## Run 2 stress 0.06408673
## Run 3 stress 0.06692187
## Run 4 stress 0.04751759
## ... New best solution
## ... Procrustes: rmse 0.03827659 max resid 0.1061893
## Run 5 stress 0.04751762
## ... Procrustes: rmse 7.091946e-05 max resid 0.0001710738
## ... Similar to previous best
## Run 6 stress 0.05672451
## Run 7 stress 0.05820216
## Run 8 stress 0.0551636
## Run 9 stress 0.05672448
## Run 10 stress 0.04997309
## Run 11 stress 0.06317194
## Run 12 stress 0.05440994
## Run 13 stress 0.06408676
## Run 14 stress 0.06317199
## Run 15 stress 0.04378852
## ... New best solution
## ... Procrustes: rmse 0.06082563 max resid 0.1762176
## Run 16 stress 0.04624983
## Run 17 stress 0.05582247
## Run 18 stress 0.05408559
## Run 19 stress 0.05440997
## Run 20 stress 0.05820216
## Run 21 stress 0.05744588
## Run 22 stress 0.04378852
## ... Procrustes: rmse 9.229561e-06 max resid 1.420124e-05
## ... Similar to previous best
## Run 23 stress 0.05345089
## Run 24 stress 0.06376403
## Run 25 stress 0.05797435
## Run 26 stress 0.04751759
## Run 27 stress 0.05516361
## Run 28 stress 0.05440993
## Run 29 stress 0.05345089
## Run 30 stress 0.06376402
## Run 31 stress 0.04751758
## Run 32 stress 0.0509714
## Run 33 stress 0.05345087
## Run 34 stress 0.05861704
## Run 35 stress 0.04624983
## Run 36 stress 0.05097142
## Run 37 stress 0.05097153
## Run 38 stress 0.06408677
## Run 39 stress 0.05440993
## Run 40 stress 0.04624984
## Run 41 stress 0.05582211
## Run 42 stress 0.05861692
## Run 43 stress 0.04378852
## ... Procrustes: rmse 9.158117e-06 max resid 1.591213e-05
## ... Similar to previous best
## Run 44 stress 0.04751761
## Run 45 stress 0.05820218
## Run 46 stress 0.04997307
## Run 47 stress 0.05345088
## Run 48 stress 0.3495698
## Run 49 stress 0.05097143
## Run 50 stress 0.04624983
## Run 51 stress 0.05188584
## Run 52 stress 0.05408559
## Run 53 stress 0.06673688
## Run 54 stress 0.04378853
## ... Procrustes: rmse 2.666501e-05 max resid 4.757594e-05
## ... Similar to previous best
## Run 55 stress 0.05097142
## Run 56 stress 0.04751759
## Run 57 stress 0.05582463
## Run 58 stress 0.04708597
## Run 59 stress 0.04378852
## ... Procrustes: rmse 4.740301e-06 max resid 8.373124e-06
## ... Similar to previous best
## Run 60 stress 0.05440994
## Run 61 stress 0.04378852
## ... New best solution
## ... Procrustes: rmse 1.412649e-06 max resid 3.083181e-06
## ... Similar to previous best
## Run 62 stress 0.05797436
## Run 63 stress 0.0509714
## Run 64 stress 0.05307522
## Run 65 stress 0.05582203
## Run 66 stress 0.04708598
## Run 67 stress 0.05345088
## Run 68 stress 0.04708598
## Run 69 stress 0.0475176
## Run 70 stress 0.04624983
## Run 71 stress 0.04624983
## Run 72 stress 0.05797423
## Run 73 stress 0.04378852
## ... Procrustes: rmse 1.871276e-06 max resid 3.206638e-06
## ... Similar to previous best
## Run 74 stress 0.0534509
## Run 75 stress 0.04378853
## ... Procrustes: rmse 2.136595e-05 max resid 4.132983e-05
## ... Similar to previous best
## Run 76 stress 0.05345087
## Run 77 stress 0.05762361
## Run 78 stress 0.04378852
## ... Procrustes: rmse 3.705509e-06 max resid 6.592648e-06
## ... Similar to previous best
## Run 79 stress 0.05820216
## Run 80 stress 0.05762349
## Run 81 stress 0.05516361
## Run 82 stress 0.06376402
## Run 83 stress 0.0509714
## Run 84 stress 0.05440993
## Run 85 stress 0.05440994
## Run 86 stress 0.04751759
## Run 87 stress 0.0540856
## Run 88 stress 0.04624985
## Run 89 stress 0.05672436
## Run 90 stress 0.06673679
## Run 91 stress 0.06317192
## Run 92 stress 0.05861699
## Run 93 stress 0.05820217
## Run 94 stress 0.05820218
## Run 95 stress 0.05797422
## Run 96 stress 0.04751759
## Run 97 stress 0.06408673
## Run 98 stress 0.04378852
## ... Procrustes: rmse 1.266392e-06 max resid 2.358145e-06
## ... Similar to previous best
## Run 99 stress 0.05753097
## Run 100 stress 0.04751763
## Run 101 stress 0.05345087
## Run 102 stress 0.05440999
## Run 103 stress 0.05762375
## Run 104 stress 0.05582232
## Run 105 stress 0.04624983
## Run 106 stress 0.04751759
## Run 107 stress 0.05408561
## Run 108 stress 0.05440994
## Run 109 stress 0.0551636
## Run 110 stress 0.05097139
## Run 111 stress 0.04997309
## Run 112 stress 0.05097153
## Run 113 stress 0.04751758
## Run 114 stress 0.05345088
## Run 115 stress 0.05797431
## Run 116 stress 0.05797419
## Run 117 stress 0.04997307
## Run 118 stress 0.05440992
## Run 119 stress 0.04997304
## Run 120 stress 0.05820218
## Run 121 stress 0.06408676
## Run 122 stress 0.0534509
## Run 123 stress 0.05582236
## Run 124 stress 0.05516361
## Run 125 stress 0.06024748
## Run 126 stress 0.04751759
## Run 127 stress 0.05762359
## Run 128 stress 0.04751759
## Run 129 stress 0.05516362
## Run 130 stress 0.05097148
## Run 131 stress 0.05188592
## Run 132 stress 0.05582459
## Run 133 stress 0.04624983
## Run 134 stress 0.05307522
## Run 135 stress 0.05440992
## Run 136 stress 0.05440994
## Run 137 stress 0.05582243
## Run 138 stress 0.04624983
## Run 139 stress 0.04624983
## Run 140 stress 0.04624984
## Run 141 stress 0.0576234
## Run 142 stress 0.05097145
## Run 143 stress 0.05762367
## Run 144 stress 0.06285543
## Run 145 stress 0.05582175
## Run 146 stress 0.05408559
## Run 147 stress 0.04378853
## ... Procrustes: rmse 2.489692e-05 max resid 4.315074e-05
## ... Similar to previous best
## Run 148 stress 0.0475176
## Run 149 stress 0.05188584
## Run 150 stress 0.04751758
## Run 151 stress 0.05408566
## Run 152 stress 0.04997317
## Run 153 stress 0.05440998
## Run 154 stress 0.06408672
## Run 155 stress 0.04751759
## Run 156 stress 0.05440993
## Run 157 stress 0.05861689
## Run 158 stress 0.04997293
## Run 159 stress 0.04708597
## Run 160 stress 0.04751759
## Run 161 stress 0.05739947
## Run 162 stress 0.04378852
## ... Procrustes: rmse 8.357805e-06 max resid 1.488061e-05
## ... Similar to previous best
## Run 163 stress 0.04378852
## ... Procrustes: rmse 7.995719e-06 max resid 1.355584e-05
## ... Similar to previous best
## Run 164 stress 0.04751759
## Run 165 stress 0.05762347
## Run 166 stress 0.05440993
## Run 167 stress 0.05188588
## Run 168 stress 0.04751761
## Run 169 stress 0.05441
## Run 170 stress 0.04751758
## Run 171 stress 0.04751759
## Run 172 stress 0.04751762
## Run 173 stress 0.05440992
## Run 174 stress 0.05097154
## Run 175 stress 0.05744317
## Run 176 stress 0.05188589
## Run 177 stress 0.05762345
## Run 178 stress 0.06285562
## Run 179 stress 0.05762356
## Run 180 stress 0.04751759
## Run 181 stress 0.05440992
## Run 182 stress 0.0567244
## Run 183 stress 0.0551636
## Run 184 stress 0.04751761
## Run 185 stress 0.04378852
## ... New best solution
## ... Procrustes: rmse 1.160208e-06 max resid 2.546475e-06
## ... Similar to previous best
## Run 186 stress 0.06317203
## Run 187 stress 0.06024735
## Run 188 stress 0.05797433
## Run 189 stress 0.0551636
## Run 190 stress 0.05762344
## Run 191 stress 0.05744428
## Run 192 stress 0.04751758
## Run 193 stress 0.05188586
## Run 194 stress 0.05408559
## Run 195 stress 0.05739905
## Run 196 stress 0.04624984
## Run 197 stress 0.06673702
## Run 198 stress 0.04378852
## ... Procrustes: rmse 3.793241e-06 max resid 7.577256e-06
## ... Similar to previous best
## Run 199 stress 0.04378852
## ... Procrustes: rmse 6.104225e-06 max resid 9.792574e-06
## ... Similar to previous best
## Run 200 stress 0.05744345
## Run 201 stress 0.04378852
## ... Procrustes: rmse 5.977417e-06 max resid 1.057847e-05
## ... Similar to previous best
## Run 202 stress 0.05672442
## Run 203 stress 0.05097143
## Run 204 stress 0.04624984
## Run 205 stress 0.0475176
## Run 206 stress 0.05440995
## Run 207 stress 0.04624983
## Run 208 stress 0.06317193
## Run 209 stress 0.05744299
## Run 210 stress 0.05762341
## Run 211 stress 0.04378852
## ... Procrustes: rmse 5.521076e-06 max resid 9.120749e-06
## ... Similar to previous best
## Run 212 stress 0.04997291
## Run 213 stress 0.05516361
## Run 214 stress 0.05408559
## Run 215 stress 0.05097142
## Run 216 stress 0.05440993
## Run 217 stress 0.05516367
## Run 218 stress 0.05672436
## Run 219 stress 0.0509715
## Run 220 stress 0.0576235
## Run 221 stress 0.06317199
## Run 222 stress 0.05440994
## Run 223 stress 0.06408677
## Run 224 stress 0.05672447
## Run 225 stress 0.04708602
## Run 226 stress 0.06163049
## Run 227 stress 0.05739906
## Run 228 stress 0.05440992
## Run 229 stress 0.0586169
## Run 230 stress 0.04624983
## Run 231 stress 0.05797417
## Run 232 stress 0.04624983
## Run 233 stress 0.05188587
## Run 234 stress 0.0534509
## Run 235 stress 0.0475176
## Run 236 stress 0.05820218
## Run 237 stress 0.04378853
## ... Procrustes: rmse 2.957594e-05 max resid 5.224442e-05
## ... Similar to previous best
## Run 238 stress 0.04708595
## Run 239 stress 0.04378852
## ... Procrustes: rmse 8.121864e-06 max resid 1.461425e-05
## ... Similar to previous best
## Run 240 stress 0.04624983
## Run 241 stress 0.05188585
## Run 242 stress 0.04624983
## Run 243 stress 0.05408562
## Run 244 stress 0.0509714
## Run 245 stress 0.05188594
## Run 246 stress 0.05097142
## Run 247 stress 0.04624983
## Run 248 stress 0.05188589
## Run 249 stress 0.04751761
## Run 250 stress 0.05307522
## Run 251 stress 0.04378852
## ... Procrustes: rmse 1.490531e-05 max resid 2.595073e-05
## ... Similar to previous best
## Run 252 stress 0.04624983
## Run 253 stress 0.05582199
## Run 254 stress 0.04708596
## Run 255 stress 0.04751765
## Run 256 stress 0.05762383
## Run 257 stress 0.04624983
## Run 258 stress 0.04624984
## Run 259 stress 0.3495726
## Run 260 stress 0.06408673
## Run 261 stress 0.04378852
## ... Procrustes: rmse 7.417483e-06 max resid 1.423833e-05
## ... Similar to previous best
## Run 262 stress 0.04378852
## ... Procrustes: rmse 3.533775e-06 max resid 5.692727e-06
## ... Similar to previous best
## Run 263 stress 0.04378852
## ... Procrustes: rmse 2.088598e-05 max resid 3.679193e-05
## ... Similar to previous best
## Run 264 stress 0.06317203
## Run 265 stress 0.05440992
## Run 266 stress 0.05440992
## Run 267 stress 0.0509715
## Run 268 stress 0.05440995
## Run 269 stress 0.0616305
## Run 270 stress 0.04997297
## Run 271 stress 0.04378852
## ... Procrustes: rmse 7.099879e-06 max resid 1.277985e-05
## ... Similar to previous best
## Run 272 stress 0.04751758
## Run 273 stress 0.04751761
## Run 274 stress 0.05762375
## Run 275 stress 0.05440993
## Run 276 stress 0.04624984
## Run 277 stress 0.0551636
## Run 278 stress 0.05762369
## Run 279 stress 0.04378852
## ... Procrustes: rmse 1.849194e-06 max resid 2.953801e-06
## ... Similar to previous best
## Run 280 stress 0.0576235
## Run 281 stress 0.0551636
## Run 282 stress 0.05744464
## Run 283 stress 0.04997293
## Run 284 stress 0.05307527
## Run 285 stress 0.04624984
## Run 286 stress 0.04751758
## Run 287 stress 0.04751766
## Run 288 stress 0.04624984
## Run 289 stress 0.04997317
## Run 290 stress 0.05440997
## Run 291 stress 0.04751758
## Run 292 stress 0.05672439
## Run 293 stress 0.04708595
## Run 294 stress 0.06692226
## Run 295 stress 0.05762354
## Run 296 stress 0.0582022
## Run 297 stress 0.05582462
## Run 298 stress 0.05582184
## Run 299 stress 0.04751762
## Run 300 stress 0.04708599
## Run 301 stress 0.04378852
## ... Procrustes: rmse 1.680311e-05 max resid 2.99941e-05
## ... Similar to previous best
## Run 302 stress 0.04624985
## Run 303 stress 0.05762359
## Run 304 stress 0.05097143
## Run 305 stress 0.04378852
## ... Procrustes: rmse 7.418698e-06 max resid 1.260082e-05
## ... Similar to previous best
## Run 306 stress 0.06376401
## Run 307 stress 0.05188588
## Run 308 stress 0.04378853
## ... Procrustes: rmse 3.421482e-05 max resid 5.965839e-05
## ... Similar to previous best
## Run 309 stress 0.05307523
## Run 310 stress 0.04624983
## Run 311 stress 0.04997285
## Run 312 stress 0.06285537
## Run 313 stress 0.05739971
## Run 314 stress 0.05744525
## Run 315 stress 0.04624983
## Run 316 stress 0.04624984
## Run 317 stress 0.04624983
## Run 318 stress 0.05861694
## Run 319 stress 0.05797422
## Run 320 stress 0.05861705
## Run 321 stress 0.05820221
## Run 322 stress 0.0475176
## Run 323 stress 0.04624985
## Run 324 stress 0.05188593
## Run 325 stress 0.04624983
## Run 326 stress 0.05097147
## Run 327 stress 0.05408563
## Run 328 stress 0.05097154
## Run 329 stress 0.06673703
## Run 330 stress 0.05762335
## Run 331 stress 0.3318533
## Run 332 stress 0.04624986
## Run 333 stress 0.0575309
## Run 334 stress 0.04378852
## ... Procrustes: rmse 5.910088e-06 max resid 9.99348e-06
## ... Similar to previous best
## Run 335 stress 0.0475176
## Run 336 stress 0.04378852
## ... Procrustes: rmse 4.512838e-06 max resid 7.449304e-06
## ... Similar to previous best
## Run 337 stress 0.05097144
## Run 338 stress 0.0551636
## Run 339 stress 0.04378852
## ... Procrustes: rmse 1.959382e-05 max resid 3.428399e-05
## ... Similar to previous best
## Run 340 stress 0.04751759
## Run 341 stress 0.04378852
## ... Procrustes: rmse 2.965443e-06 max resid 6.589846e-06
## ... Similar to previous best
## Run 342 stress 0.063172
## Run 343 stress 0.04624984
## Run 344 stress 0.04997297
## Run 345 stress 0.05307524
## Run 346 stress 0.06317192
## Run 347 stress 0.0475176
## Run 348 stress 0.06024718
## Run 349 stress 0.04624983
## Run 350 stress 0.04624983
## Run 351 stress 0.0475176
## Run 352 stress 0.05861686
## Run 353 stress 0.04708601
## Run 354 stress 0.05582179
## Run 355 stress 0.06408673
## Run 356 stress 0.04624983
## Run 357 stress 0.05744406
## Run 358 stress 0.05797421
## Run 359 stress 0.05440994
## Run 360 stress 0.05516361
## Run 361 stress 0.04708597
## Run 362 stress 0.05582228
## Run 363 stress 0.04751758
## Run 364 stress 0.0540856
## Run 365 stress 0.05762349
## Run 366 stress 0.05440993
## Run 367 stress 0.0551636
## Run 368 stress 0.05097146
## Run 369 stress 0.05188585
## Run 370 stress 0.05440997
## Run 371 stress 0.05582236
## Run 372 stress 0.0631721
## Run 373 stress 0.0567245
## Run 374 stress 0.063172
## Run 375 stress 0.05582463
## Run 376 stress 0.04378853
## ... Procrustes: rmse 2.866342e-05 max resid 4.977335e-05
## ... Similar to previous best
## Run 377 stress 0.04751759
## Run 378 stress 0.05440992
## Run 379 stress 0.05188587
## Run 380 stress 0.04751762
## Run 381 stress 0.0551636
## Run 382 stress 0.05739903
## Run 383 stress 0.04378852
## ... Procrustes: rmse 7.773831e-06 max resid 1.902306e-05
## ... Similar to previous best
## Run 384 stress 0.04708598
## Run 385 stress 0.06317192
## Run 386 stress 0.0475176
## Run 387 stress 0.06673684
## Run 388 stress 0.05861697
## Run 389 stress 0.06376407
## Run 390 stress 0.04378852
## ... Procrustes: rmse 1.387107e-05 max resid 2.453052e-05
## ... Similar to previous best
## Run 391 stress 0.04378852
## ... Procrustes: rmse 5.97708e-06 max resid 1.044688e-05
## ... Similar to previous best
## Run 392 stress 0.06376401
## Run 393 stress 0.05516361
## Run 394 stress 0.05097149
## Run 395 stress 0.05097144
## Run 396 stress 0.05582168
## Run 397 stress 0.05440992
## Run 398 stress 0.06317198
## Run 399 stress 0.05345088
## Run 400 stress 0.05097156
## Run 401 stress 0.06163049
## Run 402 stress 0.05440996
## Run 403 stress 0.05345088
## Run 404 stress 0.05440992
## Run 405 stress 0.05762367
## Run 406 stress 0.05753083
## Run 407 stress 0.0573989
## Run 408 stress 0.04378852
## ... Procrustes: rmse 6.917572e-06 max resid 1.204174e-05
## ... Similar to previous best
## Run 409 stress 0.05672442
## Run 410 stress 0.05097141
## Run 411 stress 0.04751762
## Run 412 stress 0.05345088
## Run 413 stress 0.06163053
## Run 414 stress 0.05440993
## Run 415 stress 0.04708595
## Run 416 stress 0.05440998
## Run 417 stress 0.06285571
## Run 418 stress 0.05820217
## Run 419 stress 0.05408559
## Run 420 stress 0.04624984
## Run 421 stress 0.04708596
## Run 422 stress 0.04708595
## Run 423 stress 0.04624983
## Run 424 stress 0.05739897
## Run 425 stress 0.05672444
## Run 426 stress 0.04624983
## Run 427 stress 0.05441001
## Run 428 stress 0.04708595
## Run 429 stress 0.05744402
## Run 430 stress 0.05097154
## Run 431 stress 0.04378852
## ... Procrustes: rmse 5.719445e-06 max resid 1.000943e-05
## ... Similar to previous best
## Run 432 stress 0.04378852
## ... Procrustes: rmse 1.463937e-05 max resid 2.550184e-05
## ... Similar to previous best
## Run 433 stress 0.3442041
## Run 434 stress 0.05797416
## Run 435 stress 0.05753096
## Run 436 stress 0.06408676
## Run 437 stress 0.05516362
## Run 438 stress 0.04751759
## Run 439 stress 0.06673675
## Run 440 stress 0.05739943
## Run 441 stress 0.06024724
## Run 442 stress 0.04378852
## ... Procrustes: rmse 4.027651e-06 max resid 6.981168e-06
## ... Similar to previous best
## Run 443 stress 0.0574422
## Run 444 stress 0.06317193
## Run 445 stress 0.06163049
## Run 446 stress 0.05097142
## Run 447 stress 0.05820216
## Run 448 stress 0.05440998
## Run 449 stress 0.0475176
## Run 450 stress 0.05097149
## Run 451 stress 0.05672444
## Run 452 stress 0.05762352
## Run 453 stress 0.06408673
## Run 454 stress 0.05744325
## Run 455 stress 0.05440992
## Run 456 stress 0.04708595
## Run 457 stress 0.0558247
## Run 458 stress 0.04378852
## ... Procrustes: rmse 7.700612e-06 max resid 1.27689e-05
## ... Similar to previous best
## Run 459 stress 0.05097146
## Run 460 stress 0.04624984
## Run 461 stress 0.05582174
## Run 462 stress 0.06376403
## Run 463 stress 0.04708595
## Run 464 stress 0.05440993
## Run 465 stress 0.05440992
## Run 466 stress 0.05097143
## Run 467 stress 0.05672439
## Run 468 stress 0.05762363
## Run 469 stress 0.06408676
## Run 470 stress 0.04708596
## Run 471 stress 0.06408675
## Run 472 stress 0.04624983
## Run 473 stress 0.05408561
## Run 474 stress 0.05516361
## Run 475 stress 0.04751761
## Run 476 stress 0.04624983
## Run 477 stress 0.0540856
## Run 478 stress 0.05762369
## Run 479 stress 0.06735813
## Run 480 stress 0.05440992
## Run 481 stress 0.05672444
## Run 482 stress 0.05097139
## Run 483 stress 0.05516362
## Run 484 stress 0.05744317
## Run 485 stress 0.05097146
## Run 486 stress 0.05797419
## Run 487 stress 0.05345088
## Run 488 stress 0.05345088
## Run 489 stress 0.05188595
## Run 490 stress 0.04751758
## Run 491 stress 0.05861706
## Run 492 stress 0.04708599
## Run 493 stress 0.05188587
## Run 494 stress 0.05188587
## Run 495 stress 0.05408563
## Run 496 stress 0.05097148
## Run 497 stress 0.05516363
## Run 498 stress 0.04624983
## Run 499 stress 0.04378852
## ... Procrustes: rmse 6.587512e-06 max resid 1.079089e-05
## ... Similar to previous best
## Run 500 stress 0.05345089
## *** Best solution repeated 30 times# Stratified lakes
pds_NMDS <- metaMDS(pds_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.02693829
## Run 1 stress 0.02693834
## ... Procrustes: rmse 9.29161e-05 max resid 0.0001607191
## ... Similar to previous best
## Run 2 stress 0.08382835
## Run 3 stress 0.02693829
## ... Procrustes: rmse 1.666719e-05 max resid 2.882272e-05
## ... Similar to previous best
## Run 4 stress 0.07547299
## Run 5 stress 0.07374801
## Run 6 stress 0.08382845
## Run 7 stress 0.0269384
## ... Procrustes: rmse 0.000163561 max resid 0.0002807127
## ... Similar to previous best
## Run 8 stress 0.07547299
## Run 9 stress 0.02693832
## ... Procrustes: rmse 0.0001103702 max resid 0.000211996
## ... Similar to previous best
## Run 10 stress 0.07547299
## Run 11 stress 0.02693829
## ... Procrustes: rmse 4.385179e-05 max resid 7.491448e-05
## ... Similar to previous best
## Run 12 stress 0.02693835
## ... Procrustes: rmse 0.0001530402 max resid 0.0002618044
## ... Similar to previous best
## Run 13 stress 0.07374804
## Run 14 stress 0.07547299
## Run 15 stress 0.179905
## Run 16 stress 0.02693834
## ... Procrustes: rmse 0.0001425703 max resid 0.0002439744
## ... Similar to previous best
## Run 17 stress 0.07374805
## Run 18 stress 0.07374807
## Run 19 stress 0.07547301
## Run 20 stress 0.0269383
## ... Procrustes: rmse 5.76642e-05 max resid 9.846806e-05
## ... Similar to previous best
## Run 21 stress 0.02693838
## ... Procrustes: rmse 0.0001847753 max resid 0.000317978
## ... Similar to previous best
## Run 22 stress 0.07374801
## Run 23 stress 0.02693836
## ... Procrustes: rmse 9.235752e-05 max resid 0.0001540305
## ... Similar to previous best
## Run 24 stress 0.02693835
## ... Procrustes: rmse 0.0001623989 max resid 0.0002779555
## ... Similar to previous best
## Run 25 stress 0.073748
## Run 26 stress 0.02693837
## ... Procrustes: rmse 0.000137005 max resid 0.0002350724
## ... Similar to previous best
## Run 27 stress 0.02693828
## ... New best solution
## ... Procrustes: rmse 3.149383e-05 max resid 5.383675e-05
## ... Similar to previous best
## Run 28 stress 0.02693835
## ... Procrustes: rmse 0.000158182 max resid 0.0002710952
## ... Similar to previous best
## Run 29 stress 0.02693838
## ... Procrustes: rmse 0.0001494045 max resid 0.0002564463
## ... Similar to previous best
## Run 30 stress 0.073748
## Run 31 stress 0.1889143
## Run 32 stress 0.1889141
## Run 33 stress 0.02693838
## ... Procrustes: rmse 0.0001593238 max resid 0.0002746382
## ... Similar to previous best
## Run 34 stress 0.07374811
## Run 35 stress 0.07374811
## Run 36 stress 0.02693838
## ... Procrustes: rmse 0.000168617 max resid 0.0002868412
## ... Similar to previous best
## Run 37 stress 0.0269383
## ... Procrustes: rmse 9.066957e-05 max resid 0.0001562855
## ... Similar to previous best
## Run 38 stress 0.1889141
## Run 39 stress 0.07374808
## Run 40 stress 0.02693833
## ... Procrustes: rmse 0.0001240487 max resid 0.0002112457
## ... Similar to previous best
## Run 41 stress 0.02693833
## ... Procrustes: rmse 0.0001244781 max resid 0.0002118821
## ... Similar to previous best
## Run 42 stress 0.08382861
## Run 43 stress 0.07374808
## Run 44 stress 0.02693832
## ... Procrustes: rmse 9.258919e-05 max resid 0.0001619024
## ... Similar to previous best
## Run 45 stress 0.02693833
## ... Procrustes: rmse 0.0001071313 max resid 0.0001875899
## ... Similar to previous best
## Run 46 stress 0.02693834
## ... Procrustes: rmse 0.0001232024 max resid 0.0002120627
## ... Similar to previous best
## Run 47 stress 0.02693843
## ... Procrustes: rmse 0.0002041213 max resid 0.0003509954
## ... Similar to previous best
## Run 48 stress 0.1889141
## Run 49 stress 0.07374803
## Run 50 stress 0.07374803
## Run 51 stress 0.1799051
## Run 52 stress 0.07547299
## Run 53 stress 0.07374802
## Run 54 stress 0.02693835
## ... Procrustes: rmse 0.0001486244 max resid 0.0002555383
## ... Similar to previous best
## Run 55 stress 0.08382867
## Run 56 stress 0.1862383
## Run 57 stress 0.07374806
## Run 58 stress 0.07374812
## Run 59 stress 0.0838286
## Run 60 stress 0.075473
## Run 61 stress 0.02693835
## ... Procrustes: rmse 0.0001223948 max resid 0.0002100066
## ... Similar to previous best
## Run 62 stress 0.02693831
## ... Procrustes: rmse 7.473262e-05 max resid 0.0001286856
## ... Similar to previous best
## Run 63 stress 0.07547302
## Run 64 stress 0.02693829
## ... Procrustes: rmse 6.381307e-05 max resid 0.0001106423
## ... Similar to previous best
## Run 65 stress 0.02693837
## ... Procrustes: rmse 0.0001448984 max resid 0.0002527261
## ... Similar to previous best
## Run 66 stress 0.02693838
## ... Procrustes: rmse 0.0001791959 max resid 0.0003071833
## ... Similar to previous best
## Run 67 stress 0.08382825
## Run 68 stress 0.02693838
## ... Procrustes: rmse 0.0001573656 max resid 0.0002691611
## ... Similar to previous best
## Run 69 stress 0.02693831
## ... Procrustes: rmse 6.756698e-05 max resid 0.0001225144
## ... Similar to previous best
## Run 70 stress 0.02693836
## ... Procrustes: rmse 0.0001666984 max resid 0.000281343
## ... Similar to previous best
## Run 71 stress 0.07374802
## Run 72 stress 0.1756177
## Run 73 stress 0.02693839
## ... Procrustes: rmse 0.0001676988 max resid 0.0002871875
## ... Similar to previous best
## Run 74 stress 0.1756177
## Run 75 stress 0.08382847
## Run 76 stress 0.0269383
## ... Procrustes: rmse 8.206629e-05 max resid 0.0001405479
## ... Similar to previous best
## Run 77 stress 0.2273964
## Run 78 stress 0.02693838
## ... Procrustes: rmse 0.0001490631 max resid 0.0002537367
## ... Similar to previous best
## Run 79 stress 0.02693834
## ... Procrustes: rmse 0.0001414024 max resid 0.0002413386
## ... Similar to previous best
## Run 80 stress 0.1862386
## Run 81 stress 0.075473
## Run 82 stress 0.179905
## Run 83 stress 0.02693836
## ... Procrustes: rmse 0.0001663722 max resid 0.0002841554
## ... Similar to previous best
## Run 84 stress 0.07547299
## Run 85 stress 0.07547299
## Run 86 stress 0.02693831
## ... Procrustes: rmse 6.731871e-05 max resid 0.0001157086
## ... Similar to previous best
## Run 87 stress 0.1889142
## Run 88 stress 0.02693836
## ... Procrustes: rmse 0.0001395681 max resid 0.0002402668
## ... Similar to previous best
## Run 89 stress 0.02693838
## ... Procrustes: rmse 0.0001837346 max resid 0.0003143628
## ... Similar to previous best
## Run 90 stress 0.2273964
## Run 91 stress 0.02693838
## ... Procrustes: rmse 0.0001362744 max resid 0.0002347084
## ... Similar to previous best
## Run 92 stress 0.02693835
## ... Procrustes: rmse 0.0001452182 max resid 0.0002495811
## ... Similar to previous best
## Run 93 stress 0.02693831
## ... Procrustes: rmse 6.799429e-05 max resid 0.0001269799
## ... Similar to previous best
## Run 94 stress 0.075473
## Run 95 stress 0.07374805
## Run 96 stress 0.02693828
## ... Procrustes: rmse 2.196812e-05 max resid 3.802174e-05
## ... Similar to previous best
## Run 97 stress 0.07374805
## Run 98 stress 0.02693829
## ... Procrustes: rmse 3.148779e-05 max resid 5.403168e-05
## ... Similar to previous best
## Run 99 stress 0.02693833
## ... Procrustes: rmse 0.0001307443 max resid 0.0002239169
## ... Similar to previous best
## Run 100 stress 0.075473
## Run 101 stress 0.07374809
## Run 102 stress 0.08382836
## Run 103 stress 0.02693832
## ... Procrustes: rmse 3.495589e-05 max resid 5.88168e-05
## ... Similar to previous best
## Run 104 stress 0.02693837
## ... Procrustes: rmse 0.0001417436 max resid 0.000243421
## ... Similar to previous best
## Run 105 stress 0.02693832
## ... Procrustes: rmse 0.0001193994 max resid 0.0002037533
## ... Similar to previous best
## Run 106 stress 0.02693832
## ... Procrustes: rmse 8.93382e-05 max resid 0.0001531165
## ... Similar to previous best
## Run 107 stress 0.02693832
## ... Procrustes: rmse 8.427636e-05 max resid 0.0001461451
## ... Similar to previous best
## Run 108 stress 0.0269383
## ... Procrustes: rmse 7.53609e-05 max resid 0.0001285209
## ... Similar to previous best
## Run 109 stress 0.02693834
## ... Procrustes: rmse 7.265769e-05 max resid 0.00012134
## ... Similar to previous best
## Run 110 stress 0.179905
## Run 111 stress 0.02693831
## ... Procrustes: rmse 7.4522e-05 max resid 0.0001277591
## ... Similar to previous best
## Run 112 stress 0.02693838
## ... Procrustes: rmse 0.0001774741 max resid 0.000302713
## ... Similar to previous best
## Run 113 stress 0.02693838
## ... Procrustes: rmse 0.0001525065 max resid 0.0002604144
## ... Similar to previous best
## Run 114 stress 0.02693834
## ... Procrustes: rmse 0.0001458612 max resid 0.0002496378
## ... Similar to previous best
## Run 115 stress 0.07374804
## Run 116 stress 0.0269384
## ... Procrustes: rmse 0.0001746612 max resid 0.0002991847
## ... Similar to previous best
## Run 117 stress 0.1862388
## Run 118 stress 0.07547299
## Run 119 stress 0.02693841
## ... Procrustes: rmse 0.0001804184 max resid 0.0003101795
## ... Similar to previous best
## Run 120 stress 0.07374804
## Run 121 stress 0.07547301
## Run 122 stress 0.02693836
## ... Procrustes: rmse 0.0001631331 max resid 0.0002792539
## ... Similar to previous best
## Run 123 stress 0.08382849
## Run 124 stress 0.179905
## Run 125 stress 0.07374807
## Run 126 stress 0.02693834
## ... Procrustes: rmse 0.0001121217 max resid 0.0001925853
## ... Similar to previous best
## Run 127 stress 0.02693834
## ... Procrustes: rmse 0.0001414928 max resid 0.0002423425
## ... Similar to previous best
## Run 128 stress 0.02693833
## ... Procrustes: rmse 0.0001254873 max resid 0.0002149371
## ... Similar to previous best
## Run 129 stress 0.07547301
## Run 130 stress 0.08382832
## Run 131 stress 0.075473
## Run 132 stress 0.02693837
## ... Procrustes: rmse 0.0001473928 max resid 0.0002517501
## ... Similar to previous best
## Run 133 stress 0.08382864
## Run 134 stress 0.02693838
## ... Procrustes: rmse 0.0001484554 max resid 0.0002529153
## ... Similar to previous best
## Run 135 stress 0.07374806
## Run 136 stress 0.0269383
## ... Procrustes: rmse 5.798093e-05 max resid 9.959405e-05
## ... Similar to previous best
## Run 137 stress 0.02693829
## ... Procrustes: rmse 4.109596e-05 max resid 7.434626e-05
## ... Similar to previous best
## Run 138 stress 0.02693831
## ... Procrustes: rmse 0.0001016368 max resid 0.0001738912
## ... Similar to previous best
## Run 139 stress 0.02693834
## ... Procrustes: rmse 8.833897e-05 max resid 0.0001525527
## ... Similar to previous best
## Run 140 stress 0.02693838
## ... Procrustes: rmse 0.0001837683 max resid 0.0003149911
## ... Similar to previous best
## Run 141 stress 0.02693843
## ... Procrustes: rmse 0.0002212738 max resid 0.0003766217
## ... Similar to previous best
## Run 142 stress 0.07374805
## Run 143 stress 0.02693834
## ... Procrustes: rmse 0.0001389726 max resid 0.0002370929
## ... Similar to previous best
## Run 144 stress 0.07547301
## Run 145 stress 0.1756177
## Run 146 stress 0.1799051
## Run 147 stress 0.1756177
## Run 148 stress 0.08382873
## Run 149 stress 0.02693831
## ... Procrustes: rmse 9.569972e-05 max resid 0.0001627492
## ... Similar to previous best
## Run 150 stress 0.02693834
## ... Procrustes: rmse 0.0001252922 max resid 0.0002128099
## ... Similar to previous best
## Run 151 stress 0.08382856
## Run 152 stress 0.1862388
## Run 153 stress 0.02693832
## ... Procrustes: rmse 0.0001225493 max resid 0.0002098024
## ... Similar to previous best
## Run 154 stress 0.02693832
## ... Procrustes: rmse 8.860863e-05 max resid 0.0001519393
## ... Similar to previous best
## Run 155 stress 0.02693842
## ... Procrustes: rmse 0.0002145114 max resid 0.0003676543
## ... Similar to previous best
## Run 156 stress 0.073748
## Run 157 stress 0.02693829
## ... Procrustes: rmse 6.825272e-05 max resid 0.0001167909
## ... Similar to previous best
## Run 158 stress 0.02693831
## ... Procrustes: rmse 0.0001087518 max resid 0.0001874114
## ... Similar to previous best
## Run 159 stress 0.02693841
## ... Procrustes: rmse 0.0001706217 max resid 0.0002906058
## ... Similar to previous best
## Run 160 stress 0.07374803
## Run 161 stress 0.07374802
## Run 162 stress 0.0269384
## ... Procrustes: rmse 0.0001982607 max resid 0.0003393788
## ... Similar to previous best
## Run 163 stress 0.08382854
## Run 164 stress 0.08382849
## Run 165 stress 0.1756177
## Run 166 stress 0.07547299
## Run 167 stress 0.02693831
## ... Procrustes: rmse 8.951509e-05 max resid 0.0001520813
## ... Similar to previous best
## Run 168 stress 0.02693838
## ... Procrustes: rmse 0.000152157 max resid 0.0002601988
## ... Similar to previous best
## Run 169 stress 0.02693839
## ... Procrustes: rmse 0.0001572753 max resid 0.0002700246
## ... Similar to previous best
## Run 170 stress 0.179905
## Run 171 stress 0.2852148
## Run 172 stress 0.02693835
## ... Procrustes: rmse 0.0001577084 max resid 0.0002701594
## ... Similar to previous best
## Run 173 stress 0.02693839
## ... Procrustes: rmse 0.0001859172 max resid 0.0003188152
## ... Similar to previous best
## Run 174 stress 0.07374806
## Run 175 stress 0.08382839
## Run 176 stress 0.08382835
## Run 177 stress 0.073748
## Run 178 stress 0.0269383
## ... Procrustes: rmse 4.878894e-05 max resid 8.387499e-05
## ... Similar to previous best
## Run 179 stress 0.02693833
## ... Procrustes: rmse 0.0001058982 max resid 0.0001821997
## ... Similar to previous best
## Run 180 stress 0.02693837
## ... Procrustes: rmse 0.0001736035 max resid 0.000291262
## ... Similar to previous best
## Run 181 stress 0.02693839
## ... Procrustes: rmse 0.0001625556 max resid 0.0002779824
## ... Similar to previous best
## Run 182 stress 0.07374801
## Run 183 stress 0.07374804
## Run 184 stress 0.07374803
## Run 185 stress 0.07374813
## Run 186 stress 0.02693839
## ... Procrustes: rmse 0.0001524568 max resid 0.0002628587
## ... Similar to previous best
## Run 187 stress 0.07374804
## Run 188 stress 0.073748
## Run 189 stress 0.07374807
## Run 190 stress 0.07547299
## Run 191 stress 0.07374803
## Run 192 stress 0.02693836
## ... Procrustes: rmse 0.0001325976 max resid 0.0002275076
## ... Similar to previous best
## Run 193 stress 0.073748
## Run 194 stress 0.2273964
## Run 195 stress 0.07374803
## Run 196 stress 0.08382849
## Run 197 stress 0.07374808
## Run 198 stress 0.07374811
## Run 199 stress 0.02693837
## ... Procrustes: rmse 0.0001221587 max resid 0.0002105401
## ... Similar to previous best
## Run 200 stress 0.08382857
## Run 201 stress 0.02693829
## ... Procrustes: rmse 3.63268e-05 max resid 5.223606e-05
## ... Similar to previous best
## Run 202 stress 0.02693833
## ... Procrustes: rmse 0.0001240157 max resid 0.0002128922
## ... Similar to previous best
## Run 203 stress 0.07374809
## Run 204 stress 0.02693831
## ... Procrustes: rmse 8.161018e-05 max resid 0.0001398845
## ... Similar to previous best
## Run 205 stress 0.07374803
## Run 206 stress 0.1862383
## Run 207 stress 0.02693832
## ... Procrustes: rmse 9.407943e-05 max resid 0.0001616407
## ... Similar to previous best
## Run 208 stress 0.02693837
## ... Procrustes: rmse 0.0001695992 max resid 0.0002907071
## ... Similar to previous best
## Run 209 stress 0.07547299
## Run 210 stress 0.02693834
## ... Procrustes: rmse 0.0001139974 max resid 0.0001946969
## ... Similar to previous best
## Run 211 stress 0.02693835
## ... Procrustes: rmse 0.0001544169 max resid 0.000264393
## ... Similar to previous best
## Run 212 stress 0.07374802
## Run 213 stress 0.075473
## Run 214 stress 0.02693834
## ... Procrustes: rmse 0.0001129282 max resid 0.0001936716
## ... Similar to previous best
## Run 215 stress 0.02693834
## ... Procrustes: rmse 0.0001153353 max resid 0.0001976228
## ... Similar to previous best
## Run 216 stress 0.0269383
## ... Procrustes: rmse 8.402682e-05 max resid 0.0001435961
## ... Similar to previous best
## Run 217 stress 0.179905
## Run 218 stress 0.1862384
## Run 219 stress 0.02693832
## ... Procrustes: rmse 0.0001129062 max resid 0.0001933423
## ... Similar to previous best
## Run 220 stress 0.1889141
## Run 221 stress 0.0269383
## ... Procrustes: rmse 5.933413e-05 max resid 0.0001019149
## ... Similar to previous best
## Run 222 stress 0.02693833
## ... Procrustes: rmse 0.0001250503 max resid 0.0002138066
## ... Similar to previous best
## Run 223 stress 0.1889141
## Run 224 stress 0.02693835
## ... Procrustes: rmse 0.0001282563 max resid 0.0002199608
## ... Similar to previous best
## Run 225 stress 0.07374801
## Run 226 stress 0.02693832
## ... Procrustes: rmse 7.568656e-05 max resid 0.0001280391
## ... Similar to previous best
## Run 227 stress 0.07374804
## Run 228 stress 0.02693832
## ... Procrustes: rmse 9.992894e-05 max resid 0.0001692002
## ... Similar to previous best
## Run 229 stress 0.02693833
## ... Procrustes: rmse 0.0001033725 max resid 0.0001768556
## ... Similar to previous best
## Run 230 stress 0.02693839
## ... Procrustes: rmse 0.0001658922 max resid 0.0002856761
## ... Similar to previous best
## Run 231 stress 0.07374805
## Run 232 stress 0.02693833
## ... Procrustes: rmse 0.0001301089 max resid 0.0002228796
## ... Similar to previous best
## Run 233 stress 0.07374802
## Run 234 stress 0.07547299
## Run 235 stress 0.1799051
## Run 236 stress 0.07547299
## Run 237 stress 0.07374804
## Run 238 stress 0.02693831
## ... Procrustes: rmse 7.6773e-05 max resid 0.0001309259
## ... Similar to previous best
## Run 239 stress 0.0269383
## ... Procrustes: rmse 7.858631e-05 max resid 0.0001351911
## ... Similar to previous best
## Run 240 stress 0.02693839
## ... Procrustes: rmse 0.0001898706 max resid 0.0003247608
## ... Similar to previous best
## Run 241 stress 0.07374812
## Run 242 stress 0.1756177
## Run 243 stress 0.02693836
## ... Procrustes: rmse 0.0001487614 max resid 0.0002530885
## ... Similar to previous best
## Run 244 stress 0.02693835
## ... Procrustes: rmse 0.0001434286 max resid 0.0002468574
## ... Similar to previous best
## Run 245 stress 0.08382821
## Run 246 stress 0.0269383
## ... Procrustes: rmse 4.68451e-05 max resid 7.99795e-05
## ... Similar to previous best
## Run 247 stress 0.0838287
## Run 248 stress 0.02693831
## ... Procrustes: rmse 6.840617e-05 max resid 0.0001165319
## ... Similar to previous best
## Run 249 stress 0.02693829
## ... Procrustes: rmse 2.806885e-05 max resid 4.71564e-05
## ... Similar to previous best
## Run 250 stress 0.1756177
## Run 251 stress 0.07374801
## Run 252 stress 0.07374806
## Run 253 stress 0.02693829
## ... Procrustes: rmse 2.357875e-05 max resid 3.485181e-05
## ... Similar to previous best
## Run 254 stress 0.07374808
## Run 255 stress 0.07374801
## Run 256 stress 0.07374809
## Run 257 stress 0.02693832
## ... Procrustes: rmse 9.483839e-05 max resid 0.0001663127
## ... Similar to previous best
## Run 258 stress 0.02693837
## ... Procrustes: rmse 0.0001727518 max resid 0.000295796
## ... Similar to previous best
## Run 259 stress 0.02693831
## ... Procrustes: rmse 7.517182e-05 max resid 0.0001288073
## ... Similar to previous best
## Run 260 stress 0.1756177
## Run 261 stress 0.0269383
## ... Procrustes: rmse 3.891005e-05 max resid 6.716302e-05
## ... Similar to previous best
## Run 262 stress 0.02693835
## ... Procrustes: rmse 0.0001272573 max resid 0.000218114
## ... Similar to previous best
## Run 263 stress 0.1799051
## Run 264 stress 0.02693838
## ... Procrustes: rmse 0.0001736044 max resid 0.0002950519
## ... Similar to previous best
## Run 265 stress 0.02693834
## ... Procrustes: rmse 0.0001162459 max resid 0.0001989196
## ... Similar to previous best
## Run 266 stress 0.0737481
## Run 267 stress 0.08382829
## Run 268 stress 0.08382863
## Run 269 stress 0.08382859
## Run 270 stress 0.02693839
## ... Procrustes: rmse 0.0001566867 max resid 0.0002666363
## ... Similar to previous best
## Run 271 stress 0.02693829
## ... Procrustes: rmse 5.282251e-05 max resid 8.914433e-05
## ... Similar to previous best
## Run 272 stress 0.07374808
## Run 273 stress 0.02693835
## ... Procrustes: rmse 0.000156552 max resid 0.0002685289
## ... Similar to previous best
## Run 274 stress 0.02693838
## ... Procrustes: rmse 0.000181121 max resid 0.0003099844
## ... Similar to previous best
## Run 275 stress 0.07374806
## Run 276 stress 0.02693836
## ... Procrustes: rmse 0.0001332264 max resid 0.0002275165
## ... Similar to previous best
## Run 277 stress 0.02693836
## ... Procrustes: rmse 0.0001640304 max resid 0.000281667
## ... Similar to previous best
## Run 278 stress 0.02693835
## ... Procrustes: rmse 2.905254e-05 max resid 4.429859e-05
## ... Similar to previous best
## Run 279 stress 0.02693835
## ... Procrustes: rmse 0.0001238388 max resid 0.0002119222
## ... Similar to previous best
## Run 280 stress 0.07374805
## Run 281 stress 0.073748
## Run 282 stress 0.02693832
## ... Procrustes: rmse 9.519709e-05 max resid 0.0001634869
## ... Similar to previous best
## Run 283 stress 0.08382859
## Run 284 stress 0.1756177
## Run 285 stress 0.179905
## Run 286 stress 0.073748
## Run 287 stress 0.02693829
## ... Procrustes: rmse 3.18296e-05 max resid 5.370575e-05
## ... Similar to previous best
## Run 288 stress 0.179905
## Run 289 stress 0.0838288
## Run 290 stress 0.075473
## Run 291 stress 0.0269383
## ... Procrustes: rmse 4.023067e-05 max resid 6.94232e-05
## ... Similar to previous best
## Run 292 stress 0.1862384
## Run 293 stress 0.0269383
## ... Procrustes: rmse 8.807622e-05 max resid 0.0001508559
## ... Similar to previous best
## Run 294 stress 0.1862382
## Run 295 stress 0.07374801
## Run 296 stress 0.02693839
## ... Procrustes: rmse 0.0001850515 max resid 0.0003175961
## ... Similar to previous best
## Run 297 stress 0.07374801
## Run 298 stress 0.02693833
## ... Procrustes: rmse 0.0001278995 max resid 0.0002196794
## ... Similar to previous best
## Run 299 stress 0.02693835
## ... Procrustes: rmse 0.0001209061 max resid 0.0002062035
## ... Similar to previous best
## Run 300 stress 0.07547299
## Run 301 stress 0.073748
## Run 302 stress 0.07374809
## Run 303 stress 0.07547299
## Run 304 stress 0.179905
## Run 305 stress 0.07374807
## Run 306 stress 0.07374801
## Run 307 stress 0.07374801
## Run 308 stress 0.02693838
## ... Procrustes: rmse 0.0001423319 max resid 0.0002448075
## ... Similar to previous best
## Run 309 stress 0.02693839
## ... Procrustes: rmse 0.0001639308 max resid 0.0002803417
## ... Similar to previous best
## Run 310 stress 0.07374801
## Run 311 stress 0.1889142
## Run 312 stress 0.07547299
## Run 313 stress 0.02693831
## ... Procrustes: rmse 0.0001070463 max resid 0.0001828416
## ... Similar to previous best
## Run 314 stress 0.02693839
## ... Procrustes: rmse 0.0001899822 max resid 0.0003246349
## ... Similar to previous best
## Run 315 stress 0.08382863
## Run 316 stress 0.07547299
## Run 317 stress 0.02693831
## ... Procrustes: rmse 0.0001048561 max resid 0.0001800282
## ... Similar to previous best
## Run 318 stress 0.02693834
## ... Procrustes: rmse 0.0001169411 max resid 0.0002003733
## ... Similar to previous best
## Run 319 stress 0.0269384
## ... Procrustes: rmse 0.0001473027 max resid 0.0002503848
## ... Similar to previous best
## Run 320 stress 0.02693835
## ... Procrustes: rmse 0.0001529038 max resid 0.0002622041
## ... Similar to previous best
## Run 321 stress 0.02693832
## ... Procrustes: rmse 0.0001119663 max resid 0.0001914891
## ... Similar to previous best
## Run 322 stress 0.07374801
## Run 323 stress 0.07374801
## Run 324 stress 0.179905
## Run 325 stress 0.07374815
## Run 326 stress 0.0269384
## ... Procrustes: rmse 0.0002021211 max resid 0.0003459581
## ... Similar to previous best
## Run 327 stress 0.075473
## Run 328 stress 0.02693844
## ... Procrustes: rmse 0.0001823841 max resid 0.0003139879
## ... Similar to previous best
## Run 329 stress 0.08382823
## Run 330 stress 0.07374803
## Run 331 stress 0.0269384
## ... Procrustes: rmse 0.0001958905 max resid 0.000335762
## ... Similar to previous best
## Run 332 stress 0.02693829
## ... Procrustes: rmse 2.686215e-05 max resid 4.620787e-05
## ... Similar to previous best
## Run 333 stress 0.1756177
## Run 334 stress 0.075473
## Run 335 stress 0.08382867
## Run 336 stress 0.08382848
## Run 337 stress 0.02693829
## ... Procrustes: rmse 6.473889e-05 max resid 0.0001152779
## ... Similar to previous best
## Run 338 stress 0.07374805
## Run 339 stress 0.1862387
## Run 340 stress 0.07547301
## Run 341 stress 0.02693831
## ... Procrustes: rmse 0.0001074001 max resid 0.0001832893
## ... Similar to previous best
## Run 342 stress 0.07374801
## Run 343 stress 0.02693837
## ... Procrustes: rmse 0.0001723104 max resid 0.0002957907
## ... Similar to previous best
## Run 344 stress 0.1756177
## Run 345 stress 0.07374802
## Run 346 stress 0.0269383
## ... Procrustes: rmse 4.724173e-05 max resid 7.990105e-05
## ... Similar to previous best
## Run 347 stress 0.07374801
## Run 348 stress 0.08382828
## Run 349 stress 0.07374802
## Run 350 stress 0.1756177
## Run 351 stress 0.07374811
## Run 352 stress 0.02693834
## ... Procrustes: rmse 0.0001373361 max resid 0.0002309669
## ... Similar to previous best
## Run 353 stress 0.07374801
## Run 354 stress 0.02693833
## ... Procrustes: rmse 9.919407e-05 max resid 0.0001703868
## ... Similar to previous best
## Run 355 stress 0.07374809
## Run 356 stress 0.02693829
## ... Procrustes: rmse 5.370788e-05 max resid 9.206045e-05
## ... Similar to previous best
## Run 357 stress 0.02693831
## ... Procrustes: rmse 0.0001034713 max resid 0.0001769701
## ... Similar to previous best
## Run 358 stress 0.02693838
## ... Procrustes: rmse 0.0001820162 max resid 0.0003120563
## ... Similar to previous best
## Run 359 stress 0.02693829
## ... Procrustes: rmse 6.158183e-05 max resid 0.0001045953
## ... Similar to previous best
## Run 360 stress 0.08382826
## Run 361 stress 0.02693829
## ... Procrustes: rmse 5.769839e-05 max resid 9.903037e-05
## ... Similar to previous best
## Run 362 stress 0.08382846
## Run 363 stress 0.1756177
## Run 364 stress 0.02693828
## ... New best solution
## ... Procrustes: rmse 2.04421e-05 max resid 3.509852e-05
## ... Similar to previous best
## Run 365 stress 0.1799051
## Run 366 stress 0.02693832
## ... Procrustes: rmse 9.803296e-05 max resid 0.0001675924
## ... Similar to previous best
## Run 367 stress 0.1900877
## Run 368 stress 0.179905
## Run 369 stress 0.0269384
## ... Procrustes: rmse 0.0001759289 max resid 0.0003007863
## ... Similar to previous best
## Run 370 stress 0.0737481
## Run 371 stress 0.0269383
## ... Procrustes: rmse 5.356244e-05 max resid 9.162543e-05
## ... Similar to previous best
## Run 372 stress 0.07374809
## Run 373 stress 0.02693835
## ... Procrustes: rmse 0.0001336107 max resid 0.0002281556
## ... Similar to previous best
## Run 374 stress 0.07374816
## Run 375 stress 0.1862385
## Run 376 stress 0.07547299
## Run 377 stress 0.0269383
## ... Procrustes: rmse 6.400672e-05 max resid 0.0001091106
## ... Similar to previous best
## Run 378 stress 0.02693831
## ... Procrustes: rmse 8.505314e-05 max resid 0.0001615486
## ... Similar to previous best
## Run 379 stress 0.0269383
## ... Procrustes: rmse 6.434923e-05 max resid 0.000110348
## ... Similar to previous best
## Run 380 stress 0.02693835
## ... Procrustes: rmse 0.0001484421 max resid 0.0002544351
## ... Similar to previous best
## Run 381 stress 0.02693839
## ... Procrustes: rmse 0.0001470184 max resid 0.0002491006
## ... Similar to previous best
## Run 382 stress 0.07374804
## Run 383 stress 0.07374809
## Run 384 stress 0.07374803
## Run 385 stress 0.02693832
## ... Procrustes: rmse 0.0001155778 max resid 0.000198893
## ... Similar to previous best
## Run 386 stress 0.07374808
## Run 387 stress 0.0269383
## ... Procrustes: rmse 5.851414e-05 max resid 8.29688e-05
## ... Similar to previous best
## Run 388 stress 0.2852162
## Run 389 stress 0.02693829
## ... Procrustes: rmse 2.834796e-05 max resid 4.767245e-05
## ... Similar to previous best
## Run 390 stress 0.02693832
## ... Procrustes: rmse 8.885859e-05 max resid 0.0001520677
## ... Similar to previous best
## Run 391 stress 0.0737481
## Run 392 stress 0.02693829
## ... Procrustes: rmse 5.252668e-05 max resid 8.954037e-05
## ... Similar to previous best
## Run 393 stress 0.07374802
## Run 394 stress 0.02693838
## ... Procrustes: rmse 0.000176509 max resid 0.000302154
## ... Similar to previous best
## Run 395 stress 0.2852142
## Run 396 stress 0.1862385
## Run 397 stress 0.02693841
## ... Procrustes: rmse 0.0001950606 max resid 0.0003355894
## ... Similar to previous best
## Run 398 stress 0.08382823
## Run 399 stress 0.1756177
## Run 400 stress 0.08382836
## Run 401 stress 0.02693839
## ... Procrustes: rmse 0.0001649802 max resid 0.0002811797
## ... Similar to previous best
## Run 402 stress 0.08382822
## Run 403 stress 0.0269383
## ... Procrustes: rmse 8.204868e-05 max resid 0.0001405374
## ... Similar to previous best
## Run 404 stress 0.08382827
## Run 405 stress 0.02693831
## ... Procrustes: rmse 7.258629e-05 max resid 0.0001243059
## ... Similar to previous best
## Run 406 stress 0.07547299
## Run 407 stress 0.02693832
## ... Procrustes: rmse 0.0001053198 max resid 0.0001808109
## ... Similar to previous best
## Run 408 stress 0.1799051
## Run 409 stress 0.02693832
## ... Procrustes: rmse 9.14289e-05 max resid 0.0001566372
## ... Similar to previous best
## Run 410 stress 0.02693829
## ... Procrustes: rmse 2.966634e-05 max resid 5.091205e-05
## ... Similar to previous best
## Run 411 stress 0.0269383
## ... Procrustes: rmse 7.529185e-05 max resid 0.0001294547
## ... Similar to previous best
## Run 412 stress 0.07547299
## Run 413 stress 0.07374803
## Run 414 stress 0.08382857
## Run 415 stress 0.02693835
## ... Procrustes: rmse 0.000130159 max resid 0.0002217989
## ... Similar to previous best
## Run 416 stress 0.02693831
## ... Procrustes: rmse 9.737019e-05 max resid 0.0001669011
## ... Similar to previous best
## Run 417 stress 0.08382857
## Run 418 stress 0.07374808
## Run 419 stress 0.02693833
## ... Procrustes: rmse 0.0001049376 max resid 0.0001783595
## ... Similar to previous best
## Run 420 stress 0.07374804
## Run 421 stress 0.02693838
## ... Procrustes: rmse 0.0001760003 max resid 0.0003023435
## ... Similar to previous best
## Run 422 stress 0.07374807
## Run 423 stress 0.2842805
## Run 424 stress 0.0269383
## ... Procrustes: rmse 5.362847e-05 max resid 9.38514e-05
## ... Similar to previous best
## Run 425 stress 0.02693833
## ... Procrustes: rmse 0.0001012484 max resid 0.0001725704
## ... Similar to previous best
## Run 426 stress 0.075473
## Run 427 stress 0.0939192
## Run 428 stress 0.1889143
## Run 429 stress 0.1889141
## Run 430 stress 0.07374807
## Run 431 stress 0.1756177
## Run 432 stress 0.02693837
## ... Procrustes: rmse 0.0001550374 max resid 0.0002647792
## ... Similar to previous best
## Run 433 stress 0.0269383
## ... Procrustes: rmse 5.021443e-05 max resid 8.510684e-05
## ... Similar to previous best
## Run 434 stress 0.02693838
## ... Procrustes: rmse 0.0001643797 max resid 0.0002807176
## ... Similar to previous best
## Run 435 stress 0.08382844
## Run 436 stress 0.07374803
## Run 437 stress 0.08382866
## Run 438 stress 0.0838285
## Run 439 stress 0.07547299
## Run 440 stress 0.08382831
## Run 441 stress 0.02693829
## ... Procrustes: rmse 5.806941e-05 max resid 9.970296e-05
## ... Similar to previous best
## Run 442 stress 0.07374803
## Run 443 stress 0.02693829
## ... Procrustes: rmse 2.168629e-05 max resid 3.784689e-05
## ... Similar to previous best
## Run 444 stress 0.1889143
## Run 445 stress 0.073748
## Run 446 stress 0.02693834
## ... Procrustes: rmse 0.0001325418 max resid 0.0002280699
## ... Similar to previous best
## Run 447 stress 0.02693835
## ... Procrustes: rmse 0.000147173 max resid 0.0002519905
## ... Similar to previous best
## Run 448 stress 0.07374802
## Run 449 stress 0.07547301
## Run 450 stress 0.08382847
## Run 451 stress 0.02693836
## ... Procrustes: rmse 0.0001390816 max resid 0.0002384388
## ... Similar to previous best
## Run 452 stress 0.07547299
## Run 453 stress 0.02693837
## ... Procrustes: rmse 0.000159925 max resid 0.0002732947
## ... Similar to previous best
## Run 454 stress 0.0269384
## ... Procrustes: rmse 0.0001601368 max resid 0.0002724742
## ... Similar to previous best
## Run 455 stress 0.0939189
## Run 456 stress 0.02693839
## ... Procrustes: rmse 0.0001812591 max resid 0.0003112561
## ... Similar to previous best
## Run 457 stress 0.02693831
## ... Procrustes: rmse 7.596784e-05 max resid 0.0001288313
## ... Similar to previous best
## Run 458 stress 0.07374803
## Run 459 stress 0.0838285
## Run 460 stress 0.02693831
## ... Procrustes: rmse 9.650911e-05 max resid 0.0001653755
## ... Similar to previous best
## Run 461 stress 0.02693835
## ... Procrustes: rmse 0.0001366275 max resid 0.0002336874
## ... Similar to previous best
## Run 462 stress 0.08382849
## Run 463 stress 0.07547301
## Run 464 stress 0.1756177
## Run 465 stress 0.07374811
## Run 466 stress 0.0838285
## Run 467 stress 0.073748
## Run 468 stress 0.179905
## Run 469 stress 0.07374803
## Run 470 stress 0.07374808
## Run 471 stress 0.02693841
## ... Procrustes: rmse 0.0002030576 max resid 0.0003479584
## ... Similar to previous best
## Run 472 stress 0.02693839
## ... Procrustes: rmse 0.0001879307 max resid 0.0003240735
## ... Similar to previous best
## Run 473 stress 0.07374809
## Run 474 stress 0.2273964
## Run 475 stress 0.07374806
## Run 476 stress 0.02693831
## ... Procrustes: rmse 9.623369e-05 max resid 0.0001651207
## ... Similar to previous best
## Run 477 stress 0.02693838
## ... Procrustes: rmse 0.0001586237 max resid 0.0002710368
## ... Similar to previous best
## Run 478 stress 0.02693829
## ... Procrustes: rmse 4.143953e-05 max resid 7.027205e-05
## ... Similar to previous best
## Run 479 stress 0.0838285
## Run 480 stress 0.179905
## Run 481 stress 0.02693833
## ... Procrustes: rmse 0.0001170094 max resid 0.0001989898
## ... Similar to previous best
## Run 482 stress 0.07374807
## Run 483 stress 0.07374807
## Run 484 stress 0.07374802
## Run 485 stress 0.0737481
## Run 486 stress 0.07374803
## Run 487 stress 0.02693834
## ... Procrustes: rmse 0.0001134071 max resid 0.0001950423
## ... Similar to previous best
## Run 488 stress 0.02693834
## ... Procrustes: rmse 0.000139114 max resid 0.0002379674
## ... Similar to previous best
## Run 489 stress 0.0269383
## ... Procrustes: rmse 6.492297e-05 max resid 0.0001119257
## ... Similar to previous best
## Run 490 stress 0.02693832
## ... Procrustes: rmse 9.496589e-05 max resid 0.0001622607
## ... Similar to previous best
## Run 491 stress 0.1756177
## Run 492 stress 0.0838284
## Run 493 stress 0.1862388
## Run 494 stress 0.08382839
## Run 495 stress 0.07374801
## Run 496 stress 0.08382844
## Run 497 stress 0.07374805
## Run 498 stress 0.02693835
## ... Procrustes: rmse 0.000117507 max resid 0.0002022616
## ... Similar to previous best
## Run 499 stress 0.07547299
## Run 500 stress 0.07374811
## *** Best solution repeated 55 times### Environmental
pde_NMDS <- metaMDS(pde_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.06490857
## Run 1 stress 0.06490859
## ... Procrustes: rmse 1.171624e-05 max resid 2.736692e-05
## ... Similar to previous best
## Run 2 stress 0.0649086
## ... Procrustes: rmse 0.0003525199 max resid 0.0008203691
## ... Similar to previous best
## Run 3 stress 0.06490846
## ... New best solution
## ... Procrustes: rmse 0.0002225897 max resid 0.0005173215
## ... Similar to previous best
## Run 4 stress 0.06490845
## ... New best solution
## ... Procrustes: rmse 3.933228e-05 max resid 0.0001076566
## ... Similar to previous best
## Run 5 stress 0.09902366
## Run 6 stress 0.06490855
## ... Procrustes: rmse 0.0001336938 max resid 0.0003314655
## ... Similar to previous best
## Run 7 stress 0.06529102
## ... Procrustes: rmse 0.01616691 max resid 0.0612721
## Run 8 stress 0.06529112
## ... Procrustes: rmse 0.0161393 max resid 0.0611536
## Run 9 stress 0.06529109
## ... Procrustes: rmse 0.01619401 max resid 0.06138383
## Run 10 stress 0.06529099
## ... Procrustes: rmse 0.01615129 max resid 0.06120888
## Run 11 stress 0.06490845
## ... New best solution
## ... Procrustes: rmse 2.422036e-05 max resid 6.025929e-05
## ... Similar to previous best
## Run 12 stress 0.06529105
## ... Procrustes: rmse 0.01618526 max resid 0.0613436
## Run 13 stress 0.06490855
## ... Procrustes: rmse 0.0001463969 max resid 0.0003343056
## ... Similar to previous best
## Run 14 stress 0.06490858
## ... Procrustes: rmse 0.0001481074 max resid 0.0003371748
## ... Similar to previous best
## Run 15 stress 0.06529094
## ... Procrustes: rmse 0.01612149 max resid 0.0610812
## Run 16 stress 0.06490849
## ... Procrustes: rmse 8.796007e-05 max resid 0.0001896031
## ... Similar to previous best
## Run 17 stress 0.06529094
## ... Procrustes: rmse 0.01598213 max resid 0.06050315
## Run 18 stress 0.08860086
## Run 19 stress 0.09053737
## Run 20 stress 0.06490845
## ... Procrustes: rmse 8.991602e-06 max resid 1.884773e-05
## ... Similar to previous best
## Run 21 stress 0.0649086
## ... Procrustes: rmse 9.250952e-05 max resid 0.0002003656
## ... Similar to previous best
## Run 22 stress 0.09037745
## Run 23 stress 0.06529105
## ... Procrustes: rmse 0.01617585 max resid 0.06130555
## Run 24 stress 0.08847899
## Run 25 stress 0.06490845
## ... Procrustes: rmse 8.358769e-06 max resid 2.202549e-05
## ... Similar to previous best
## Run 26 stress 0.06529093
## ... Procrustes: rmse 0.01611872 max resid 0.06106991
## Run 27 stress 0.06490845
## ... Procrustes: rmse 1.494631e-05 max resid 4.118268e-05
## ... Similar to previous best
## Run 28 stress 0.06529095
## ... Procrustes: rmse 0.01612332 max resid 0.06108827
## Run 29 stress 0.06529098
## ... Procrustes: rmse 0.01615018 max resid 0.06119932
## Run 30 stress 0.09560193
## Run 31 stress 0.06490849
## ... Procrustes: rmse 8.449573e-05 max resid 0.000208369
## ... Similar to previous best
## Run 32 stress 0.06490855
## ... Procrustes: rmse 0.0001466737 max resid 0.0003312868
## ... Similar to previous best
## Run 33 stress 0.06529091
## ... Procrustes: rmse 0.01608909 max resid 0.06094817
## Run 34 stress 0.06490848
## ... Procrustes: rmse 7.315598e-05 max resid 0.0001602197
## ... Similar to previous best
## Run 35 stress 0.0652909
## ... Procrustes: rmse 0.01603934 max resid 0.06074128
## Run 36 stress 0.06529098
## ... Procrustes: rmse 0.01614609 max resid 0.06118199
## Run 37 stress 0.06529107
## ... Procrustes: rmse 0.01617624 max resid 0.06130691
## Run 38 stress 0.06490846
## ... Procrustes: rmse 3.032502e-05 max resid 8.060161e-05
## ... Similar to previous best
## Run 39 stress 0.06529096
## ... Procrustes: rmse 0.01612397 max resid 0.06109247
## Run 40 stress 0.06529101
## ... Procrustes: rmse 0.01616342 max resid 0.0612538
## Run 41 stress 0.06529106
## ... Procrustes: rmse 0.0161873 max resid 0.06135153
## Run 42 stress 0.065291
## ... Procrustes: rmse 0.0161455 max resid 0.06118161
## Run 43 stress 0.06529101
## ... Procrustes: rmse 0.01616675 max resid 0.06126744
## Run 44 stress 0.06490866
## ... Procrustes: rmse 0.0002085231 max resid 0.0004737599
## ... Similar to previous best
## Run 45 stress 0.06490845
## ... New best solution
## ... Procrustes: rmse 3.148372e-06 max resid 9.810483e-06
## ... Similar to previous best
## Run 46 stress 0.06490846
## ... Procrustes: rmse 3.704065e-05 max resid 8.223345e-05
## ... Similar to previous best
## Run 47 stress 0.06529104
## ... Procrustes: rmse 0.0161783 max resid 0.06131576
## Run 48 stress 0.06529098
## ... Procrustes: rmse 0.01614089 max resid 0.06116128
## Run 49 stress 0.06529094
## ... Procrustes: rmse 0.01612763 max resid 0.06110715
## Run 50 stress 0.06490852
## ... Procrustes: rmse 6.159619e-05 max resid 0.0001424095
## ... Similar to previous best
## Run 51 stress 0.065291
## ... Procrustes: rmse 0.01615374 max resid 0.06121465
## Run 52 stress 0.06490848
## ... Procrustes: rmse 7.290033e-05 max resid 0.000160731
## ... Similar to previous best
## Run 53 stress 0.0652911
## ... Procrustes: rmse 0.01620618 max resid 0.06142999
## Run 54 stress 0.06490856
## ... Procrustes: rmse 0.0001499124 max resid 0.0003459655
## ... Similar to previous best
## Run 55 stress 0.06529095
## ... Procrustes: rmse 0.01612883 max resid 0.06111176
## Run 56 stress 0.08860085
## Run 57 stress 0.06490865
## ... Procrustes: rmse 0.0002106658 max resid 0.0004804649
## ... Similar to previous best
## Run 58 stress 0.06490847
## ... Procrustes: rmse 6.608091e-05 max resid 0.0001496111
## ... Similar to previous best
## Run 59 stress 0.09890146
## Run 60 stress 0.06529098
## ... Procrustes: rmse 0.01614333 max resid 0.06117284
## Run 61 stress 0.06490846
## ... Procrustes: rmse 3.053365e-05 max resid 9.712392e-05
## ... Similar to previous best
## Run 62 stress 0.06490847
## ... Procrustes: rmse 5.511206e-05 max resid 0.000111535
## ... Similar to previous best
## Run 63 stress 0.06490846
## ... Procrustes: rmse 3.626807e-05 max resid 7.908008e-05
## ... Similar to previous best
## Run 64 stress 0.06529101
## ... Procrustes: rmse 0.01616405 max resid 0.06125687
## Run 65 stress 0.09616738
## Run 66 stress 0.06490845
## ... Procrustes: rmse 1.678634e-05 max resid 5.518175e-05
## ... Similar to previous best
## Run 67 stress 0.06490845
## ... Procrustes: rmse 9.878379e-06 max resid 2.648264e-05
## ... Similar to previous best
## Run 68 stress 0.06529098
## ... Procrustes: rmse 0.01614528 max resid 0.06117958
## Run 69 stress 0.1009564
## Run 70 stress 0.0649085
## ... Procrustes: rmse 9.93986e-05 max resid 0.000234634
## ... Similar to previous best
## Run 71 stress 0.06529099
## ... Procrustes: rmse 0.01614785 max resid 0.06118927
## Run 72 stress 0.06490858
## ... Procrustes: rmse 0.0001621095 max resid 0.0003682846
## ... Similar to previous best
## Run 73 stress 0.08847896
## Run 74 stress 0.06490846
## ... Procrustes: rmse 3.702981e-05 max resid 6.678203e-05
## ... Similar to previous best
## Run 75 stress 0.06529105
## ... Procrustes: rmse 0.01616988 max resid 0.06128289
## Run 76 stress 0.06529089
## ... Procrustes: rmse 0.01604974 max resid 0.06078334
## Run 77 stress 0.06490845
## ... Procrustes: rmse 1.915741e-05 max resid 3.463387e-05
## ... Similar to previous best
## Run 78 stress 0.06529094
## ... Procrustes: rmse 0.01612919 max resid 0.0611137
## Run 79 stress 0.06490855
## ... Procrustes: rmse 0.0001507114 max resid 0.0003541345
## ... Similar to previous best
## Run 80 stress 0.06490845
## ... Procrustes: rmse 1.274966e-05 max resid 2.74848e-05
## ... Similar to previous best
## Run 81 stress 0.06529089
## ... Procrustes: rmse 0.01604192 max resid 0.06075299
## Run 82 stress 0.06529096
## ... Procrustes: rmse 0.01613063 max resid 0.06111923
## Run 83 stress 0.06529098
## ... Procrustes: rmse 0.01610522 max resid 0.06101469
## Run 84 stress 0.06490845
## ... Procrustes: rmse 1.377883e-05 max resid 2.817753e-05
## ... Similar to previous best
## Run 85 stress 0.06490845
## ... Procrustes: rmse 5.448958e-06 max resid 9.539916e-06
## ... Similar to previous best
## Run 86 stress 0.06490847
## ... Procrustes: rmse 3.206674e-05 max resid 5.61202e-05
## ... Similar to previous best
## Run 87 stress 0.09516608
## Run 88 stress 0.06490853
## ... Procrustes: rmse 0.0001290054 max resid 0.000297861
## ... Similar to previous best
## Run 89 stress 0.06529096
## ... Procrustes: rmse 0.0161263 max resid 0.06110041
## Run 90 stress 0.06529099
## ... Procrustes: rmse 0.01614937 max resid 0.06119539
## Run 91 stress 0.06529101
## ... Procrustes: rmse 0.01615448 max resid 0.06121741
## Run 92 stress 0.09030832
## Run 93 stress 0.06490846
## ... Procrustes: rmse 4.696209e-05 max resid 0.0001048201
## ... Similar to previous best
## Run 94 stress 0.08847896
## Run 95 stress 0.06490859
## ... Procrustes: rmse 0.0001766831 max resid 0.0004094304
## ... Similar to previous best
## Run 96 stress 0.06490847
## ... Procrustes: rmse 6.427144e-05 max resid 0.000145672
## ... Similar to previous best
## Run 97 stress 0.06490845
## ... Procrustes: rmse 1.360464e-05 max resid 2.764295e-05
## ... Similar to previous best
## Run 98 stress 0.3503473
## Run 99 stress 0.09030815
## Run 100 stress 0.06490845
## ... Procrustes: rmse 2.793803e-05 max resid 5.108919e-05
## ... Similar to previous best
## Run 101 stress 0.06490852
## ... Procrustes: rmse 0.0001248661 max resid 0.000284726
## ... Similar to previous best
## Run 102 stress 0.0649085
## ... Procrustes: rmse 0.0001008547 max resid 0.0002307343
## ... Similar to previous best
## Run 103 stress 0.06490845
## ... Procrustes: rmse 2.278627e-05 max resid 4.152481e-05
## ... Similar to previous best
## Run 104 stress 0.06490849
## ... Procrustes: rmse 8.913947e-05 max resid 0.0002111257
## ... Similar to previous best
## Run 105 stress 0.065291
## ... Procrustes: rmse 0.01616418 max resid 0.06125787
## Run 106 stress 0.09516608
## Run 107 stress 0.06490845
## ... Procrustes: rmse 6.523751e-06 max resid 1.302807e-05
## ... Similar to previous best
## Run 108 stress 0.09030815
## Run 109 stress 0.06529098
## ... Procrustes: rmse 0.01614974 max resid 0.06119786
## Run 110 stress 0.06490848
## ... Procrustes: rmse 8.057876e-05 max resid 0.0001851349
## ... Similar to previous best
## Run 111 stress 0.08847899
## Run 112 stress 0.06529094
## ... Procrustes: rmse 0.01612278 max resid 0.06108724
## Run 113 stress 0.06490845
## ... Procrustes: rmse 9.597149e-07 max resid 2.457592e-06
## ... Similar to previous best
## Run 114 stress 0.09030816
## Run 115 stress 0.08860086
## Run 116 stress 0.08847897
## Run 117 stress 0.06529093
## ... Procrustes: rmse 0.01598792 max resid 0.06052805
## Run 118 stress 0.06490845
## ... Procrustes: rmse 1.191527e-05 max resid 3.694431e-05
## ... Similar to previous best
## Run 119 stress 0.06490858
## ... Procrustes: rmse 0.0001657007 max resid 0.0003829699
## ... Similar to previous best
## Run 120 stress 0.06490846
## ... Procrustes: rmse 3.456656e-05 max resid 8.158665e-05
## ... Similar to previous best
## Run 121 stress 0.0957172
## Run 122 stress 0.06490851
## ... Procrustes: rmse 0.000112099 max resid 0.0002385307
## ... Similar to previous best
## Run 123 stress 0.06529101
## ... Procrustes: rmse 0.01616922 max resid 0.06127863
## Run 124 stress 0.065291
## ... Procrustes: rmse 0.01616454 max resid 0.06125925
## Run 125 stress 0.06490849
## ... Procrustes: rmse 9.503019e-05 max resid 0.0002093327
## ... Similar to previous best
## Run 126 stress 0.06490846
## ... Procrustes: rmse 3.229305e-05 max resid 5.920171e-05
## ... Similar to previous best
## Run 127 stress 0.06490845
## ... Procrustes: rmse 3.418168e-06 max resid 9.118518e-06
## ... Similar to previous best
## Run 128 stress 0.06490856
## ... Procrustes: rmse 0.0001610096 max resid 0.0003749556
## ... Similar to previous best
## Run 129 stress 0.06490845
## ... Procrustes: rmse 2.519554e-05 max resid 6.192021e-05
## ... Similar to previous best
## Run 130 stress 0.09053735
## Run 131 stress 0.06529095
## ... Procrustes: rmse 0.01613393 max resid 0.06113314
## Run 132 stress 0.06529102
## ... Procrustes: rmse 0.01616406 max resid 0.06125581
## Run 133 stress 0.06490852
## ... Procrustes: rmse 0.0001227839 max resid 0.000278329
## ... Similar to previous best
## Run 134 stress 0.06490845
## ... Procrustes: rmse 2.015353e-05 max resid 6.499139e-05
## ... Similar to previous best
## Run 135 stress 0.06490847
## ... Procrustes: rmse 6.899293e-05 max resid 0.0001251463
## ... Similar to previous best
## Run 136 stress 0.06490854
## ... Procrustes: rmse 0.0001084226 max resid 0.0002504038
## ... Similar to previous best
## Run 137 stress 0.06529095
## ... Procrustes: rmse 0.01613255 max resid 0.06112756
## Run 138 stress 0.09053739
## Run 139 stress 0.09030825
## Run 140 stress 0.06490846
## ... Procrustes: rmse 3.542843e-05 max resid 7.817361e-05
## ... Similar to previous best
## Run 141 stress 0.06490845
## ... Procrustes: rmse 1.038759e-05 max resid 2.187019e-05
## ... Similar to previous best
## Run 142 stress 0.06529105
## ... Procrustes: rmse 0.01617254 max resid 0.06129395
## Run 143 stress 0.06529091
## ... Procrustes: rmse 0.01609554 max resid 0.06097452
## Run 144 stress 0.06529102
## ... Procrustes: rmse 0.01616968 max resid 0.06127945
## Run 145 stress 0.06490849
## ... Procrustes: rmse 9.239583e-05 max resid 0.0002187083
## ... Similar to previous best
## Run 146 stress 0.06529097
## ... Procrustes: rmse 0.01613959 max resid 0.06115644
## Run 147 stress 0.08847897
## Run 148 stress 0.06490845
## ... Procrustes: rmse 6.855143e-06 max resid 1.233423e-05
## ... Similar to previous best
## Run 149 stress 0.06529103
## ... Procrustes: rmse 0.01617728 max resid 0.06131157
## Run 150 stress 0.06490845
## ... Procrustes: rmse 1.075378e-05 max resid 1.927165e-05
## ... Similar to previous best
## Run 151 stress 0.06490859
## ... Procrustes: rmse 0.0001754059 max resid 0.0004052439
## ... Similar to previous best
## Run 152 stress 0.06529095
## ... Procrustes: rmse 0.01612861 max resid 0.06111122
## Run 153 stress 0.06529094
## ... Procrustes: rmse 0.01612916 max resid 0.06111358
## Run 154 stress 0.06490846
## ... Procrustes: rmse 5.21833e-05 max resid 9.344745e-05
## ... Similar to previous best
## Run 155 stress 0.06490845
## ... Procrustes: rmse 7.140328e-06 max resid 1.608671e-05
## ... Similar to previous best
## Run 156 stress 0.06490855
## ... Procrustes: rmse 0.0001475838 max resid 0.0003418343
## ... Similar to previous best
## Run 157 stress 0.06529092
## ... Procrustes: rmse 0.01611124 max resid 0.06103966
## Run 158 stress 0.06529095
## ... Procrustes: rmse 0.01612708 max resid 0.061104
## Run 159 stress 0.09037753
## Run 160 stress 0.06529092
## ... Procrustes: rmse 0.01610875 max resid 0.06102915
## Run 161 stress 0.065291
## ... Procrustes: rmse 0.01615897 max resid 0.06123653
## Run 162 stress 0.06490845
## ... Procrustes: rmse 2.087397e-05 max resid 5.056342e-05
## ... Similar to previous best
## Run 163 stress 0.06490845
## ... Procrustes: rmse 1.055763e-05 max resid 1.923335e-05
## ... Similar to previous best
## Run 164 stress 0.06490849
## ... Procrustes: rmse 7.982999e-05 max resid 0.0001803656
## ... Similar to previous best
## Run 165 stress 0.06490859
## ... Procrustes: rmse 0.0001785224 max resid 0.0004221627
## ... Similar to previous best
## Run 166 stress 0.06529098
## ... Procrustes: rmse 0.01614586 max resid 0.06118195
## Run 167 stress 0.06490845
## ... Procrustes: rmse 2.337136e-05 max resid 4.808535e-05
## ... Similar to previous best
## Run 168 stress 0.06529112
## ... Procrustes: rmse 0.01620607 max resid 0.06143004
## Run 169 stress 0.06529105
## ... Procrustes: rmse 0.01618337 max resid 0.06133652
## Run 170 stress 0.06490846
## ... Procrustes: rmse 2.643662e-05 max resid 6.971951e-05
## ... Similar to previous best
## Run 171 stress 0.06529095
## ... Procrustes: rmse 0.01612261 max resid 0.06108778
## Run 172 stress 0.06529108
## ... Procrustes: rmse 0.01619661 max resid 0.06139137
## Run 173 stress 0.06490845
## ... Procrustes: rmse 2.008483e-05 max resid 3.565281e-05
## ... Similar to previous best
## Run 174 stress 0.06490845
## ... Procrustes: rmse 9.624985e-06 max resid 1.858287e-05
## ... Similar to previous best
## Run 175 stress 0.06529095
## ... Procrustes: rmse 0.01606927 max resid 0.06086795
## Run 176 stress 0.06490847
## ... Procrustes: rmse 6.708953e-05 max resid 0.0001521513
## ... Similar to previous best
## Run 177 stress 0.0649085
## ... Procrustes: rmse 0.0001037907 max resid 0.0002399291
## ... Similar to previous best
## Run 178 stress 0.06529095
## ... Procrustes: rmse 0.01613022 max resid 0.06111767
## Run 179 stress 0.06529096
## ... Procrustes: rmse 0.01614221 max resid 0.06116749
## Run 180 stress 0.06490854
## ... Procrustes: rmse 9.566218e-05 max resid 0.000211582
## ... Similar to previous best
## Run 181 stress 0.06529109
## ... Procrustes: rmse 0.01619508 max resid 0.06138408
## Run 182 stress 0.06490845
## ... Procrustes: rmse 1.562155e-05 max resid 3.415623e-05
## ... Similar to previous best
## Run 183 stress 0.09037741
## Run 184 stress 0.08847898
## Run 185 stress 0.06529107
## ... Procrustes: rmse 0.01592623 max resid 0.0602685
## Run 186 stress 0.06490845
## ... Procrustes: rmse 2.215023e-05 max resid 5.37075e-05
## ... Similar to previous best
## Run 187 stress 0.06490846
## ... Procrustes: rmse 4.159227e-05 max resid 9.494736e-05
## ... Similar to previous best
## Run 188 stress 0.06490846
## ... Procrustes: rmse 4.183505e-05 max resid 9.28878e-05
## ... Similar to previous best
## Run 189 stress 0.06490845
## ... Procrustes: rmse 9.870548e-06 max resid 1.770359e-05
## ... Similar to previous best
## Run 190 stress 0.0990237
## Run 191 stress 0.06529096
## ... Procrustes: rmse 0.01614026 max resid 0.0611593
## Run 192 stress 0.06490845
## ... Procrustes: rmse 2.537615e-05 max resid 4.735262e-05
## ... Similar to previous best
## Run 193 stress 0.06529102
## ... Procrustes: rmse 0.01616915 max resid 0.06127779
## Run 194 stress 0.06490845
## ... Procrustes: rmse 1.459368e-05 max resid 2.700572e-05
## ... Similar to previous best
## Run 195 stress 0.08860085
## Run 196 stress 0.06529091
## ... Procrustes: rmse 0.01609945 max resid 0.06099104
## Run 197 stress 0.06490848
## ... Procrustes: rmse 8.505867e-05 max resid 0.0001943572
## ... Similar to previous best
## Run 198 stress 0.0652909
## ... Procrustes: rmse 0.01607473 max resid 0.06088876
## Run 199 stress 0.09053757
## Run 200 stress 0.06490852
## ... Procrustes: rmse 0.0001239789 max resid 0.0002856316
## ... Similar to previous best
## Run 201 stress 0.09046708
## Run 202 stress 0.09107433
## Run 203 stress 0.06490845
## ... Procrustes: rmse 2.932105e-05 max resid 5.288042e-05
## ... Similar to previous best
## Run 204 stress 0.09046709
## Run 205 stress 0.06529111
## ... Procrustes: rmse 0.01619126 max resid 0.06136645
## Run 206 stress 0.06529097
## ... Procrustes: rmse 0.01613174 max resid 0.06112476
## Run 207 stress 0.06490847
## ... Procrustes: rmse 4.992741e-05 max resid 0.0001098693
## ... Similar to previous best
## Run 208 stress 0.06529094
## ... Procrustes: rmse 0.01612481 max resid 0.06109577
## Run 209 stress 0.08860085
## Run 210 stress 0.06490847
## ... Procrustes: rmse 6.177642e-05 max resid 0.0001401884
## ... Similar to previous best
## Run 211 stress 0.06529093
## ... Procrustes: rmse 0.01611619 max resid 0.06105995
## Run 212 stress 0.06490845
## ... Procrustes: rmse 2.391667e-05 max resid 5.120275e-05
## ... Similar to previous best
## Run 213 stress 0.06490848
## ... Procrustes: rmse 8.043197e-05 max resid 0.000183132
## ... Similar to previous best
## Run 214 stress 0.06490846
## ... Procrustes: rmse 2.388852e-05 max resid 5.832107e-05
## ... Similar to previous best
## Run 215 stress 0.06490854
## ... Procrustes: rmse 0.000137688 max resid 0.0003170552
## ... Similar to previous best
## Run 216 stress 0.09030815
## Run 217 stress 0.06529091
## ... Procrustes: rmse 0.0160119 max resid 0.06062791
## Run 218 stress 0.06490852
## ... Procrustes: rmse 0.0001178329 max resid 0.0002720112
## ... Similar to previous best
## Run 219 stress 0.09569943
## Run 220 stress 0.06490847
## ... Procrustes: rmse 3.695751e-05 max resid 8.102548e-05
## ... Similar to previous best
## Run 221 stress 0.06490854
## ... Procrustes: rmse 0.0001402362 max resid 0.0003070139
## ... Similar to previous best
## Run 222 stress 0.06490845
## ... Procrustes: rmse 2.179698e-05 max resid 4.420472e-05
## ... Similar to previous best
## Run 223 stress 0.06529112
## ... Procrustes: rmse 0.01620118 max resid 0.06140814
## Run 224 stress 0.0649085
## ... Procrustes: rmse 9.841684e-05 max resid 0.000196061
## ... Similar to previous best
## Run 225 stress 0.06529097
## ... Procrustes: rmse 0.01614631 max resid 0.0611842
## Run 226 stress 0.06490845
## ... Procrustes: rmse 2.253242e-05 max resid 4.800823e-05
## ... Similar to previous best
## Run 227 stress 0.06490848
## ... Procrustes: rmse 8.15317e-05 max resid 0.0001860156
## ... Similar to previous best
## Run 228 stress 0.06490846
## ... Procrustes: rmse 5.001925e-05 max resid 0.0001114312
## ... Similar to previous best
## Run 229 stress 0.3473543
## Run 230 stress 0.06529098
## ... Procrustes: rmse 0.01615428 max resid 0.06121686
## Run 231 stress 0.06529095
## ... Procrustes: rmse 0.01612156 max resid 0.0610813
## Run 232 stress 0.06490855
## ... Procrustes: rmse 0.0001288857 max resid 0.0002963474
## ... Similar to previous best
## Run 233 stress 0.06529094
## ... Procrustes: rmse 0.01612229 max resid 0.06108536
## Run 234 stress 0.06529113
## ... Procrustes: rmse 0.01621699 max resid 0.06147462
## Run 235 stress 0.06490845
## ... Procrustes: rmse 9.19604e-06 max resid 2.561698e-05
## ... Similar to previous best
## Run 236 stress 0.06529091
## ... Procrustes: rmse 0.01608726 max resid 0.06093999
## Run 237 stress 0.1042408
## Run 238 stress 0.06490847
## ... Procrustes: rmse 6.914401e-05 max resid 0.0001681327
## ... Similar to previous best
## Run 239 stress 0.09030815
## Run 240 stress 0.06529097
## ... Procrustes: rmse 0.01614266 max resid 0.06116989
## Run 241 stress 0.06529098
## ... Procrustes: rmse 0.01614785 max resid 0.06119008
## Run 242 stress 0.06490845
## ... Procrustes: rmse 1.436084e-05 max resid 2.590786e-05
## ... Similar to previous best
## Run 243 stress 0.09612475
## Run 244 stress 0.08860086
## Run 245 stress 0.06490854
## ... Procrustes: rmse 0.0001220815 max resid 0.0002770525
## ... Similar to previous best
## Run 246 stress 0.06490858
## ... Procrustes: rmse 0.0001771783 max resid 0.0004203203
## ... Similar to previous best
## Run 247 stress 0.06529093
## ... Procrustes: rmse 0.01610445 max resid 0.06101228
## Run 248 stress 0.09037745
## Run 249 stress 0.09647707
## Run 250 stress 0.06529105
## ... Procrustes: rmse 0.01617369 max resid 0.06129689
## Run 251 stress 0.06529097
## ... Procrustes: rmse 0.0161416 max resid 0.06116516
## Run 252 stress 0.06490848
## ... Procrustes: rmse 7.460519e-05 max resid 0.0001695549
## ... Similar to previous best
## Run 253 stress 0.06490845
## ... Procrustes: rmse 1.375468e-05 max resid 2.428384e-05
## ... Similar to previous best
## Run 254 stress 0.06490849
## ... Procrustes: rmse 9.602501e-05 max resid 0.000219456
## ... Similar to previous best
## Run 255 stress 0.1012667
## Run 256 stress 0.08860086
## Run 257 stress 0.06529092
## ... Procrustes: rmse 0.01600524 max resid 0.06060009
## Run 258 stress 0.06490859
## ... Procrustes: rmse 0.0001742829 max resid 0.0003951157
## ... Similar to previous best
## Run 259 stress 0.06490846
## ... Procrustes: rmse 4.129848e-05 max resid 0.0001000721
## ... Similar to previous best
## Run 260 stress 0.06529093
## ... Procrustes: rmse 0.01611639 max resid 0.06106087
## Run 261 stress 0.08847896
## Run 262 stress 0.06529094
## ... Procrustes: rmse 0.01598068 max resid 0.06049765
## Run 263 stress 0.06490845
## ... Procrustes: rmse 1.474146e-05 max resid 2.6743e-05
## ... Similar to previous best
## Run 264 stress 0.06490847
## ... Procrustes: rmse 5.80467e-05 max resid 0.0001311832
## ... Similar to previous best
## Run 265 stress 0.06529112
## ... Procrustes: rmse 0.01621145 max resid 0.06145145
## Run 266 stress 0.06529094
## ... Procrustes: rmse 0.01612577 max resid 0.06109895
## Run 267 stress 0.09559703
## Run 268 stress 0.06490857
## ... Procrustes: rmse 0.0001592085 max resid 0.0003357353
## ... Similar to previous best
## Run 269 stress 0.06490853
## ... Procrustes: rmse 0.0001216803 max resid 0.0002670485
## ... Similar to previous best
## Run 270 stress 0.1004324
## Run 271 stress 0.06490845
## ... Procrustes: rmse 7.690632e-06 max resid 1.67094e-05
## ... Similar to previous best
## Run 272 stress 0.06490845
## ... Procrustes: rmse 1.264327e-05 max resid 3.499321e-05
## ... Similar to previous best
## Run 273 stress 0.06490848
## ... Procrustes: rmse 6.075693e-05 max resid 0.0001371343
## ... Similar to previous best
## Run 274 stress 0.06490851
## ... Procrustes: rmse 6.284112e-05 max resid 0.0001441722
## ... Similar to previous best
## Run 275 stress 0.1044665
## Run 276 stress 0.08847898
## Run 277 stress 0.06490853
## ... Procrustes: rmse 0.000139519 max resid 0.0003278524
## ... Similar to previous best
## Run 278 stress 0.08860086
## Run 279 stress 0.06490847
## ... Procrustes: rmse 6.608449e-05 max resid 0.0001501591
## ... Similar to previous best
## Run 280 stress 0.06490849
## ... Procrustes: rmse 0.0001036136 max resid 0.0002446468
## ... Similar to previous best
## Run 281 stress 0.101486
## Run 282 stress 0.06490845
## ... New best solution
## ... Procrustes: rmse 4.59898e-06 max resid 1.223619e-05
## ... Similar to previous best
## Run 283 stress 0.06490849
## ... Procrustes: rmse 9.788746e-05 max resid 0.000227086
## ... Similar to previous best
## Run 284 stress 0.06529104
## ... Procrustes: rmse 0.01618065 max resid 0.06132724
## Run 285 stress 0.06529095
## ... Procrustes: rmse 0.01612815 max resid 0.06111067
## Run 286 stress 0.06490845
## ... Procrustes: rmse 2.310682e-06 max resid 4.067682e-06
## ... Similar to previous best
## Run 287 stress 0.06490859
## ... Procrustes: rmse 0.0001756667 max resid 0.0004115659
## ... Similar to previous best
## Run 288 stress 0.06490845
## ... Procrustes: rmse 6.945693e-06 max resid 1.607474e-05
## ... Similar to previous best
## Run 289 stress 0.06490845
## ... Procrustes: rmse 1.267211e-05 max resid 2.636757e-05
## ... Similar to previous best
## Run 290 stress 0.06529094
## ... Procrustes: rmse 0.01601228 max resid 0.06062986
## Run 291 stress 0.06490854
## ... Procrustes: rmse 0.000146175 max resid 0.0003419416
## ... Similar to previous best
## Run 292 stress 0.06490847
## ... Procrustes: rmse 5.90041e-05 max resid 0.0001380677
## ... Similar to previous best
## Run 293 stress 0.06490845
## ... Procrustes: rmse 2.456568e-05 max resid 4.49565e-05
## ... Similar to previous best
## Run 294 stress 0.06529103
## ... Procrustes: rmse 0.01616699 max resid 0.06127169
## Run 295 stress 0.06490845
## ... Procrustes: rmse 4.40066e-06 max resid 1.013118e-05
## ... Similar to previous best
## Run 296 stress 0.06529098
## ... Procrustes: rmse 0.01596212 max resid 0.06042175
## Run 297 stress 0.06490854
## ... Procrustes: rmse 0.0001433537 max resid 0.0003340173
## ... Similar to previous best
## Run 298 stress 0.06490845
## ... Procrustes: rmse 2.307896e-05 max resid 4.215174e-05
## ... Similar to previous best
## Run 299 stress 0.09030817
## Run 300 stress 0.06490846
## ... Procrustes: rmse 1.447045e-05 max resid 2.775088e-05
## ... Similar to previous best
## Run 301 stress 0.06490849
## ... Procrustes: rmse 9.441362e-05 max resid 0.0002201679
## ... Similar to previous best
## Run 302 stress 0.08860085
## Run 303 stress 0.06490849
## ... Procrustes: rmse 9.716477e-05 max resid 0.0002120352
## ... Similar to previous best
## Run 304 stress 0.06490856
## ... Procrustes: rmse 0.0001552037 max resid 0.0003626786
## ... Similar to previous best
## Run 305 stress 0.08847896
## Run 306 stress 0.1006197
## Run 307 stress 0.06490846
## ... Procrustes: rmse 4.738153e-05 max resid 0.0001037799
## ... Similar to previous best
## Run 308 stress 0.06490854
## ... Procrustes: rmse 0.0001440084 max resid 0.0003363987
## ... Similar to previous best
## Run 309 stress 0.0652909
## ... Procrustes: rmse 0.01602294 max resid 0.06067534
## Run 310 stress 0.09616734
## Run 311 stress 0.06490848
## ... Procrustes: rmse 6.474038e-05 max resid 0.0001186373
## ... Similar to previous best
## Run 312 stress 0.06490867
## ... Procrustes: rmse 0.0001950146 max resid 0.0004488454
## ... Similar to previous best
## Run 313 stress 0.06490849
## ... Procrustes: rmse 9.090149e-05 max resid 0.0002023816
## ... Similar to previous best
## Run 314 stress 0.06490852
## ... Procrustes: rmse 0.0001294204 max resid 0.0003013236
## ... Similar to previous best
## Run 315 stress 0.06490852
## ... Procrustes: rmse 0.000110794 max resid 0.0002595624
## ... Similar to previous best
## Run 316 stress 0.06529105
## ... Procrustes: rmse 0.01618442 max resid 0.06134106
## Run 317 stress 0.06490845
## ... Procrustes: rmse 1.809964e-05 max resid 4.554777e-05
## ... Similar to previous best
## Run 318 stress 0.06490847
## ... Procrustes: rmse 5.041033e-05 max resid 0.0001147368
## ... Similar to previous best
## Run 319 stress 0.06490849
## ... Procrustes: rmse 9.247872e-05 max resid 0.0002150495
## ... Similar to previous best
## Run 320 stress 0.0649086
## ... Procrustes: rmse 0.0001830211 max resid 0.0004272931
## ... Similar to previous best
## Run 321 stress 0.06490857
## ... Procrustes: rmse 0.0001649958 max resid 0.0003866595
## ... Similar to previous best
## Run 322 stress 0.06490847
## ... Procrustes: rmse 6.838179e-05 max resid 0.0001598929
## ... Similar to previous best
## Run 323 stress 0.06490853
## ... Procrustes: rmse 0.0001226723 max resid 0.0002847649
## ... Similar to previous best
## Run 324 stress 0.06490852
## ... Procrustes: rmse 0.0001146288 max resid 0.0002642052
## ... Similar to previous best
## Run 325 stress 0.06490845
## ... Procrustes: rmse 2.248543e-05 max resid 5.31548e-05
## ... Similar to previous best
## Run 326 stress 0.06490845
## ... Procrustes: rmse 1.242906e-05 max resid 3.411353e-05
## ... Similar to previous best
## Run 327 stress 0.06490845
## ... Procrustes: rmse 1.041702e-05 max resid 1.916389e-05
## ... Similar to previous best
## Run 328 stress 0.08860086
## Run 329 stress 0.0652909
## ... Procrustes: rmse 0.01602778 max resid 0.06069522
## Run 330 stress 0.06529096
## ... Procrustes: rmse 0.01613473 max resid 0.06113833
## Run 331 stress 0.06490852
## ... Procrustes: rmse 0.0001235552 max resid 0.0002874039
## ... Similar to previous best
## Run 332 stress 0.06490845
## ... Procrustes: rmse 7.029082e-06 max resid 1.922239e-05
## ... Similar to previous best
## Run 333 stress 0.06529093
## ... Procrustes: rmse 0.01612409 max resid 0.06109357
## Run 334 stress 0.06490847
## ... Procrustes: rmse 6.766611e-05 max resid 0.0001576712
## ... Similar to previous best
## Run 335 stress 0.06529108
## ... Procrustes: rmse 0.01619778 max resid 0.06139709
## Run 336 stress 0.06529108
## ... Procrustes: rmse 0.0162013 max resid 0.06141107
## Run 337 stress 0.06490847
## ... Procrustes: rmse 6.975592e-05 max resid 0.0001638154
## ... Similar to previous best
## Run 338 stress 0.06529109
## ... Procrustes: rmse 0.01619274 max resid 0.06137771
## Run 339 stress 0.06529095
## ... Procrustes: rmse 0.01613419 max resid 0.06113525
## Run 340 stress 0.06490845
## ... Procrustes: rmse 6.198972e-06 max resid 1.457158e-05
## ... Similar to previous best
## Run 341 stress 0.06529094
## ... Procrustes: rmse 0.01611516 max resid 0.06105693
## Run 342 stress 0.0652909
## ... Procrustes: rmse 0.01609085 max resid 0.06095692
## Run 343 stress 0.06490845
## ... Procrustes: rmse 1.27748e-05 max resid 2.892359e-05
## ... Similar to previous best
## Run 344 stress 0.06490846
## ... Procrustes: rmse 3.769807e-05 max resid 8.57841e-05
## ... Similar to previous best
## Run 345 stress 0.09030821
## Run 346 stress 0.06490847
## ... Procrustes: rmse 6.776085e-05 max resid 0.0001569015
## ... Similar to previous best
## Run 347 stress 0.06529097
## ... Procrustes: rmse 0.01614551 max resid 0.06118217
## Run 348 stress 0.06490852
## ... Procrustes: rmse 0.0001210273 max resid 0.000283435
## ... Similar to previous best
## Run 349 stress 0.06490846
## ... Procrustes: rmse 4.588987e-05 max resid 0.0001072308
## ... Similar to previous best
## Run 350 stress 0.06490845
## ... Procrustes: rmse 5.017301e-06 max resid 1.704941e-05
## ... Similar to previous best
## Run 351 stress 0.06529098
## ... Procrustes: rmse 0.01615035 max resid 0.06120272
## Run 352 stress 0.0652911
## ... Procrustes: rmse 0.01618799 max resid 0.06135778
## Run 353 stress 0.06529102
## ... Procrustes: rmse 0.0161735 max resid 0.0612982
## Run 354 stress 0.06529091
## ... Procrustes: rmse 0.01609939 max resid 0.06099133
## Run 355 stress 0.06490855
## ... Procrustes: rmse 0.0001462309 max resid 0.0003400873
## ... Similar to previous best
## Run 356 stress 0.06529097
## ... Procrustes: rmse 0.01596541 max resid 0.06043514
## Run 357 stress 0.06490845
## ... Procrustes: rmse 6.914206e-06 max resid 1.273173e-05
## ... Similar to previous best
## Run 358 stress 0.06490845
## ... Procrustes: rmse 1.099616e-05 max resid 2.382034e-05
## ... Similar to previous best
## Run 359 stress 0.06490845
## ... Procrustes: rmse 6.341959e-06 max resid 1.986658e-05
## ... Similar to previous best
## Run 360 stress 0.065291
## ... Procrustes: rmse 0.01616666 max resid 0.06126913
## Run 361 stress 0.06529096
## ... Procrustes: rmse 0.01614358 max resid 0.06117418
## Run 362 stress 0.06490845
## ... Procrustes: rmse 1.421816e-05 max resid 4.251231e-05
## ... Similar to previous best
## Run 363 stress 0.06529096
## ... Procrustes: rmse 0.01614155 max resid 0.0611666
## Run 364 stress 0.06490859
## ... Procrustes: rmse 0.0001593046 max resid 0.0003713543
## ... Similar to previous best
## Run 365 stress 0.06529096
## ... Procrustes: rmse 0.01614445 max resid 0.0611779
## Run 366 stress 0.1010491
## Run 367 stress 0.06490847
## ... Procrustes: rmse 5.832675e-05 max resid 0.0001197253
## ... Similar to previous best
## Run 368 stress 0.06490845
## ... Procrustes: rmse 3.67181e-06 max resid 9.072643e-06
## ... Similar to previous best
## Run 369 stress 0.09046706
## Run 370 stress 0.06529096
## ... Procrustes: rmse 0.01614205 max resid 0.0611679
## Run 371 stress 0.06529095
## ... Procrustes: rmse 0.01613233 max resid 0.06112802
## Run 372 stress 0.06490845
## ... Procrustes: rmse 1.709764e-05 max resid 4.062381e-05
## ... Similar to previous best
## Run 373 stress 0.06529111
## ... Procrustes: rmse 0.01619792 max resid 0.06139883
## Run 374 stress 0.06490845
## ... Procrustes: rmse 2.140484e-05 max resid 3.956117e-05
## ... Similar to previous best
## Run 375 stress 0.06529096
## ... Procrustes: rmse 0.01597127 max resid 0.06046001
## Run 376 stress 0.06529097
## ... Procrustes: rmse 0.01614561 max resid 0.06118247
## Run 377 stress 0.06490849
## ... Procrustes: rmse 9.474995e-05 max resid 0.000225368
## ... Similar to previous best
## Run 378 stress 0.09030815
## Run 379 stress 0.09836078
## Run 380 stress 0.06529099
## ... Procrustes: rmse 0.01615324 max resid 0.06121359
## Run 381 stress 0.06490845
## ... Procrustes: rmse 8.38568e-06 max resid 1.974247e-05
## ... Similar to previous best
## Run 382 stress 0.06490845
## ... Procrustes: rmse 1.784932e-05 max resid 4.099768e-05
## ... Similar to previous best
## Run 383 stress 0.06490846
## ... Procrustes: rmse 5.085367e-05 max resid 0.0001177814
## ... Similar to previous best
## Run 384 stress 0.06529102
## ... Procrustes: rmse 0.01616859 max resid 0.06127836
## Run 385 stress 0.06529102
## ... Procrustes: rmse 0.01615297 max resid 0.06121502
## Run 386 stress 0.0652909
## ... Procrustes: rmse 0.01604201 max resid 0.06075456
## Run 387 stress 0.06529094
## ... Procrustes: rmse 0.01612386 max resid 0.06109347
## Run 388 stress 0.09046711
## Run 389 stress 0.0652909
## ... Procrustes: rmse 0.01604198 max resid 0.06075275
## Run 390 stress 0.09053742
## Run 391 stress 0.06490849
## ... Procrustes: rmse 8.129905e-05 max resid 0.0001859734
## ... Similar to previous best
## Run 392 stress 0.09030816
## Run 393 stress 0.06490854
## ... Procrustes: rmse 0.0001411942 max resid 0.0003258857
## ... Similar to previous best
## Run 394 stress 0.06529091
## ... Procrustes: rmse 0.01609228 max resid 0.06096161
## Run 395 stress 0.06490845
## ... Procrustes: rmse 6.664103e-06 max resid 1.810331e-05
## ... Similar to previous best
## Run 396 stress 0.06490845
## ... Procrustes: rmse 1.088063e-05 max resid 2.506386e-05
## ... Similar to previous best
## Run 397 stress 0.06529112
## ... Procrustes: rmse 0.01621232 max resid 0.06145616
## Run 398 stress 0.06490848
## ... Procrustes: rmse 7.651668e-05 max resid 0.0001780299
## ... Similar to previous best
## Run 399 stress 0.06490845
## ... Procrustes: rmse 1.444953e-05 max resid 4.904029e-05
## ... Similar to previous best
## Run 400 stress 0.06490855
## ... Procrustes: rmse 6.912106e-05 max resid 0.0001450519
## ... Similar to previous best
## Run 401 stress 0.06490851
## ... Procrustes: rmse 0.0001104725 max resid 0.0002574078
## ... Similar to previous best
## Run 402 stress 0.06529096
## ... Procrustes: rmse 0.01614086 max resid 0.06116298
## Run 403 stress 0.06529101
## ... Procrustes: rmse 0.01594294 max resid 0.06034091
## Run 404 stress 0.06490845
## ... Procrustes: rmse 1.954495e-05 max resid 4.556731e-05
## ... Similar to previous best
## Run 405 stress 0.06490846
## ... Procrustes: rmse 4.504501e-05 max resid 8.213364e-05
## ... Similar to previous best
## Run 406 stress 0.06490845
## ... Procrustes: rmse 1.035843e-05 max resid 2.449957e-05
## ... Similar to previous best
## Run 407 stress 0.06490845
## ... Procrustes: rmse 1.287075e-05 max resid 3.299114e-05
## ... Similar to previous best
## Run 408 stress 0.06529098
## ... Procrustes: rmse 0.01615423 max resid 0.061218
## Run 409 stress 0.08860085
## Run 410 stress 0.06529099
## ... Procrustes: rmse 0.01616161 max resid 0.06124839
## Run 411 stress 0.06490862
## ... Procrustes: rmse 0.0001847756 max resid 0.0004254095
## ... Similar to previous best
## Run 412 stress 0.09612473
## Run 413 stress 0.06490846
## ... Procrustes: rmse 4.368373e-05 max resid 8.991787e-05
## ... Similar to previous best
## Run 414 stress 0.06529103
## ... Procrustes: rmse 0.01617969 max resid 0.06132219
## Run 415 stress 0.08860085
## Run 416 stress 0.06490847
## ... Procrustes: rmse 4.39256e-05 max resid 9.701e-05
## ... Similar to previous best
## Run 417 stress 0.06490845
## ... Procrustes: rmse 1.188133e-05 max resid 2.563286e-05
## ... Similar to previous best
## Run 418 stress 0.06490846
## ... Procrustes: rmse 1.946029e-05 max resid 4.299367e-05
## ... Similar to previous best
## Run 419 stress 0.09046705
## Run 420 stress 0.08860085
## Run 421 stress 0.06490845
## ... Procrustes: rmse 6.851523e-06 max resid 1.290742e-05
## ... Similar to previous best
## Run 422 stress 0.06490845
## ... Procrustes: rmse 2.424275e-05 max resid 6.194228e-05
## ... Similar to previous best
## Run 423 stress 0.09037739
## Run 424 stress 0.06490847
## ... Procrustes: rmse 6.242683e-05 max resid 0.0001455538
## ... Similar to previous best
## Run 425 stress 0.06529106
## ... Procrustes: rmse 0.01619211 max resid 0.06137355
## Run 426 stress 0.0904671
## Run 427 stress 0.06490845
## ... Procrustes: rmse 4.07057e-06 max resid 8.365557e-06
## ... Similar to previous best
## Run 428 stress 0.06490849
## ... Procrustes: rmse 9.108773e-05 max resid 0.0002125466
## ... Similar to previous best
## Run 429 stress 0.06490845
## ... Procrustes: rmse 2.837358e-05 max resid 6.669249e-05
## ... Similar to previous best
## Run 430 stress 0.06490846
## ... Procrustes: rmse 3.907122e-05 max resid 9.02799e-05
## ... Similar to previous best
## Run 431 stress 0.06529097
## ... Procrustes: rmse 0.01614799 max resid 0.06119215
## Run 432 stress 0.08847896
## Run 433 stress 0.08860086
## Run 434 stress 0.06490846
## ... Procrustes: rmse 5.747997e-05 max resid 0.0001361831
## ... Similar to previous best
## Run 435 stress 0.06490845
## ... Procrustes: rmse 1.832952e-05 max resid 4.32469e-05
## ... Similar to previous best
## Run 436 stress 0.08860085
## Run 437 stress 0.06490847
## ... Procrustes: rmse 5.211329e-05 max resid 0.0001223772
## ... Similar to previous best
## Run 438 stress 0.09046707
## Run 439 stress 0.06490848
## ... Procrustes: rmse 8.06255e-05 max resid 0.000167368
## ... Similar to previous best
## Run 440 stress 0.06529105
## ... Procrustes: rmse 0.01618628 max resid 0.06134956
## Run 441 stress 0.06529093
## ... Procrustes: rmse 0.01611596 max resid 0.06106037
## Run 442 stress 0.09046706
## Run 443 stress 0.06529098
## ... Procrustes: rmse 0.01614984 max resid 0.0611995
## Run 444 stress 0.06490849
## ... Procrustes: rmse 9.958064e-05 max resid 0.0002164381
## ... Similar to previous best
## Run 445 stress 0.06490861
## ... Procrustes: rmse 0.0001767711 max resid 0.000411037
## ... Similar to previous best
## Run 446 stress 0.06490846
## ... Procrustes: rmse 3.550594e-05 max resid 8.464201e-05
## ... Similar to previous best
## Run 447 stress 0.06490845
## ... Procrustes: rmse 1.89143e-05 max resid 3.463361e-05
## ... Similar to previous best
## Run 448 stress 0.06529108
## ... Procrustes: rmse 0.01619673 max resid 0.06139372
## Run 449 stress 0.06490847
## ... Procrustes: rmse 6.454463e-05 max resid 0.0001505683
## ... Similar to previous best
## Run 450 stress 0.06529097
## ... Procrustes: rmse 0.01614616 max resid 0.06118514
## Run 451 stress 0.06490858
## ... Procrustes: rmse 0.0001653152 max resid 0.0003798854
## ... Similar to previous best
## Run 452 stress 0.08860086
## Run 453 stress 0.08860086
## Run 454 stress 0.06490846
## ... Procrustes: rmse 1.460056e-05 max resid 2.882042e-05
## ... Similar to previous best
## Run 455 stress 0.06490845
## ... Procrustes: rmse 1.675723e-05 max resid 3.861723e-05
## ... Similar to previous best
## Run 456 stress 0.09660071
## Run 457 stress 0.06529095
## ... Procrustes: rmse 0.01613424 max resid 0.06113576
## Run 458 stress 0.06529104
## ... Procrustes: rmse 0.01618098 max resid 0.06132857
## Run 459 stress 0.06529098
## ... Procrustes: rmse 0.01615562 max resid 0.06122383
## Run 460 stress 0.06529092
## ... Procrustes: rmse 0.0161068 max resid 0.06102258
## Run 461 stress 0.06490848
## ... Procrustes: rmse 7.896744e-05 max resid 0.0001786979
## ... Similar to previous best
## Run 462 stress 0.06490852
## ... Procrustes: rmse 0.0001270852 max resid 0.0002979114
## ... Similar to previous best
## Run 463 stress 0.06529093
## ... Procrustes: rmse 0.01611723 max resid 0.06106552
## Run 464 stress 0.09030823
## Run 465 stress 0.09053737
## Run 466 stress 0.06529104
## ... Procrustes: rmse 0.01618266 max resid 0.06133539
## Run 467 stress 0.06490846
## ... Procrustes: rmse 5.34998e-05 max resid 0.0001250213
## ... Similar to previous best
## Run 468 stress 0.06529093
## ... Procrustes: rmse 0.01612116 max resid 0.06108201
## Run 469 stress 0.09053736
## Run 470 stress 0.06529107
## ... Procrustes: rmse 0.01619149 max resid 0.0613718
## Run 471 stress 0.06529104
## ... Procrustes: rmse 0.01617388 max resid 0.06129805
## Run 472 stress 0.06529096
## ... Procrustes: rmse 0.01613827 max resid 0.06115179
## Run 473 stress 0.06529108
## ... Procrustes: rmse 0.01591674 max resid 0.06023223
## Run 474 stress 0.09030815
## Run 475 stress 0.06529097
## ... Procrustes: rmse 0.01614582 max resid 0.06118302
## Run 476 stress 0.06490849
## ... Procrustes: rmse 9.88838e-05 max resid 0.0002220912
## ... Similar to previous best
## Run 477 stress 0.06490845
## ... Procrustes: rmse 2.769236e-05 max resid 5.966389e-05
## ... Similar to previous best
## Run 478 stress 0.06529103
## ... Procrustes: rmse 0.01617659 max resid 0.06131025
## Run 479 stress 0.06529092
## ... Procrustes: rmse 0.01611112 max resid 0.06104027
## Run 480 stress 0.06490845
## ... Procrustes: rmse 8.525083e-06 max resid 1.588955e-05
## ... Similar to previous best
## Run 481 stress 0.06490849
## ... Procrustes: rmse 3.011706e-05 max resid 7.582828e-05
## ... Similar to previous best
## Run 482 stress 0.06490846
## ... Procrustes: rmse 5.340674e-05 max resid 0.0001241809
## ... Similar to previous best
## Run 483 stress 0.06529095
## ... Procrustes: rmse 0.01612383 max resid 0.06109314
## Run 484 stress 0.06529106
## ... Procrustes: rmse 0.01619083 max resid 0.06136838
## Run 485 stress 0.06529092
## ... Procrustes: rmse 0.01610785 max resid 0.06102673
## Run 486 stress 0.06490845
## ... Procrustes: rmse 2.547236e-06 max resid 8.341152e-06
## ... Similar to previous best
## Run 487 stress 0.09651763
## Run 488 stress 0.06490853
## ... Procrustes: rmse 0.000129654 max resid 0.0003036392
## ... Similar to previous best
## Run 489 stress 0.06490849
## ... Procrustes: rmse 9.22273e-05 max resid 0.0002139116
## ... Similar to previous best
## Run 490 stress 0.06490845
## ... Procrustes: rmse 3.140989e-05 max resid 7.418681e-05
## ... Similar to previous best
## Run 491 stress 0.06490846
## ... Procrustes: rmse 3.800127e-05 max resid 8.813583e-05
## ... Similar to previous best
## Run 492 stress 0.06490845
## ... Procrustes: rmse 2.50324e-05 max resid 4.917032e-05
## ... Similar to previous best
## Run 493 stress 0.08847897
## Run 494 stress 0.09107474
## Run 495 stress 0.0652909
## ... Procrustes: rmse 0.01603187 max resid 0.06071235
## Run 496 stress 0.06529089
## ... Procrustes: rmse 0.0160573 max resid 0.06081576
## Run 497 stress 0.09053743
## Run 498 stress 0.06490849
## ... Procrustes: rmse 9.657472e-05 max resid 0.0002255936
## ... Similar to previous best
## Run 499 stress 0.06490845
## ... Procrustes: rmse 1.294089e-05 max resid 3.057914e-05
## ... Similar to previous best
## Run 500 stress 0.06529091
## ... Procrustes: rmse 0.01609971 max resid 0.06099331
## *** Best solution repeated 111 times# Mixed and stratified lakes
pdems_NMDS <- metaMDS(pdems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.05254584
## Run 1 stress 0.05164056
## ... New best solution
## ... Procrustes: rmse 0.03098962 max resid 0.1084405
## Run 2 stress 0.0606983
## Run 3 stress 0.06045999
## Run 4 stress 0.0607548
## Run 5 stress 0.06296546
## Run 6 stress 0.06139661
## Run 7 stress 0.06296553
## Run 8 stress 0.0667384
## Run 9 stress 0.05986303
## Run 10 stress 0.06953364
## Run 11 stress 0.06852391
## Run 12 stress 0.07009202
## Run 13 stress 0.05919885
## Run 14 stress 0.05919865
## Run 15 stress 0.05164046
## ... New best solution
## ... Procrustes: rmse 9.517256e-05 max resid 0.0002119089
## ... Similar to previous best
## Run 16 stress 0.06069813
## Run 17 stress 0.06069813
## Run 18 stress 0.06047314
## Run 19 stress 0.0604733
## Run 20 stress 0.06139663
## Run 21 stress 0.06887255
## Run 22 stress 0.07696098
## Run 23 stress 0.06737709
## Run 24 stress 0.05164045
## ... New best solution
## ... Procrustes: rmse 1.071083e-05 max resid 2.684688e-05
## ... Similar to previous best
## Run 25 stress 0.07217828
## Run 26 stress 0.06501993
## Run 27 stress 0.06046
## Run 28 stress 0.06047315
## Run 29 stress 0.06686144
## Run 30 stress 0.0583366
## Run 31 stress 0.05986304
## Run 32 stress 0.06045996
## Run 33 stress 0.05919859
## Run 34 stress 0.06213234
## Run 35 stress 0.06501995
## Run 36 stress 0.06495322
## Run 37 stress 0.05833664
## Run 38 stress 0.05164055
## ... Procrustes: rmse 0.0002609661 max resid 0.0006120397
## ... Similar to previous best
## Run 39 stress 0.06213226
## Run 40 stress 0.05164049
## ... Procrustes: rmse 4.641954e-05 max resid 0.0001017607
## ... Similar to previous best
## Run 41 stress 0.05254589
## Run 42 stress 0.06045997
## Run 43 stress 0.06364095
## Run 44 stress 0.06904439
## Run 45 stress 0.06197546
## Run 46 stress 0.05164043
## ... New best solution
## ... Procrustes: rmse 3.786043e-05 max resid 8.917012e-05
## ... Similar to previous best
## Run 47 stress 0.05919877
## Run 48 stress 0.06501991
## Run 49 stress 0.06197541
## Run 50 stress 0.06364097
## Run 51 stress 0.07097704
## Run 52 stress 0.07049476
## Run 53 stress 0.05164048
## ... Procrustes: rmse 6.967701e-05 max resid 0.0001583409
## ... Similar to previous best
## Run 54 stress 0.06233269
## Run 55 stress 0.06501981
## Run 56 stress 0.07099732
## Run 57 stress 0.05164046
## ... Procrustes: rmse 0.0001426453 max resid 0.0003182175
## ... Similar to previous best
## Run 58 stress 0.06751097
## Run 59 stress 0.06296551
## Run 60 stress 0.0721497
## Run 61 stress 0.06732444
## Run 62 stress 0.07187085
## Run 63 stress 0.06045996
## Run 64 stress 0.07083048
## Run 65 stress 0.07092776
## Run 66 stress 0.06045995
## Run 67 stress 0.06046001
## Run 68 stress 0.060417
## Run 69 stress 0.06076604
## Run 70 stress 0.06364095
## Run 71 stress 0.06338439
## Run 72 stress 0.05254587
## Run 73 stress 0.06467874
## Run 74 stress 0.05164063
## ... Procrustes: rmse 0.000156451 max resid 0.0003564699
## ... Similar to previous best
## Run 75 stress 0.06045998
## Run 76 stress 0.05882327
## Run 77 stress 0.05164046
## ... Procrustes: rmse 4.712733e-05 max resid 0.0001099708
## ... Similar to previous best
## Run 78 stress 0.06124126
## Run 79 stress 0.06683359
## Run 80 stress 0.06762717
## Run 81 stress 0.0607548
## Run 82 stress 0.06069821
## Run 83 stress 0.06501983
## Run 84 stress 0.06129265
## Run 85 stress 0.06874203
## Run 86 stress 0.06705325
## Run 87 stress 0.06034493
## Run 88 stress 0.07092775
## Run 89 stress 0.06075482
## Run 90 stress 0.05164049
## ... Procrustes: rmse 7.528464e-05 max resid 0.0001869061
## ... Similar to previous best
## Run 91 stress 0.06705326
## Run 92 stress 0.06921958
## Run 93 stress 0.06495318
## Run 94 stress 0.06159185
## Run 95 stress 0.05164056
## ... Procrustes: rmse 0.0001335615 max resid 0.0003025578
## ... Similar to previous best
## Run 96 stress 0.06046001
## Run 97 stress 0.06034497
## Run 98 stress 0.05882321
## Run 99 stress 0.06041702
## Run 100 stress 0.06197567
## Run 101 stress 0.05164053
## ... Procrustes: rmse 0.0001150356 max resid 0.0002582073
## ... Similar to previous best
## Run 102 stress 0.06011618
## Run 103 stress 0.07092777
## Run 104 stress 0.07367999
## Run 105 stress 0.05254591
## Run 106 stress 0.06495329
## Run 107 stress 0.05254592
## Run 108 stress 0.06233269
## Run 109 stress 0.05164045
## ... Procrustes: rmse 2.420904e-05 max resid 5.168096e-05
## ... Similar to previous best
## Run 110 stress 0.05254592
## Run 111 stress 0.06075479
## Run 112 stress 0.06737707
## Run 113 stress 0.07083086
## Run 114 stress 0.0543584
## Run 115 stress 0.06364093
## Run 116 stress 0.05833674
## Run 117 stress 0.06338441
## Run 118 stress 0.05164054
## ... Procrustes: rmse 0.0001207388 max resid 0.0002712632
## ... Similar to previous best
## Run 119 stress 0.05164052
## ... Procrustes: rmse 0.0001066453 max resid 0.0002336763
## ... Similar to previous best
## Run 120 stress 0.06739961
## Run 121 stress 0.06069817
## Run 122 stress 0.05882321
## Run 123 stress 0.05919865
## Run 124 stress 0.06887266
## Run 125 stress 0.05435839
## Run 126 stress 0.05254585
## Run 127 stress 0.06045997
## Run 128 stress 0.06683355
## Run 129 stress 0.05254585
## Run 130 stress 0.06501991
## Run 131 stress 0.06495324
## Run 132 stress 0.06732442
## Run 133 stress 0.05164047
## ... Procrustes: rmse 6.111706e-05 max resid 0.000208622
## ... Similar to previous best
## Run 134 stress 0.05435837
## Run 135 stress 0.07279466
## Run 136 stress 0.05164055
## ... Procrustes: rmse 0.0001295959 max resid 0.0002709153
## ... Similar to previous best
## Run 137 stress 0.0671188
## Run 138 stress 0.05164049
## ... Procrustes: rmse 7.728206e-05 max resid 0.0001771889
## ... Similar to previous best
## Run 139 stress 0.05986302
## Run 140 stress 0.07214962
## Run 141 stress 0.06804697
## Run 142 stress 0.06501978
## Run 143 stress 0.06705335
## Run 144 stress 0.0588232
## Run 145 stress 0.05254578
## Run 146 stress 0.06884608
## Run 147 stress 0.06075486
## Run 148 stress 0.05164052
## ... Procrustes: rmse 0.0001011407 max resid 0.0002092684
## ... Similar to previous best
## Run 149 stress 0.0714146
## Run 150 stress 0.05833663
## Run 151 stress 0.05164052
## ... Procrustes: rmse 0.0001039139 max resid 0.0002364147
## ... Similar to previous best
## Run 152 stress 0.05164061
## ... Procrustes: rmse 0.0001645547 max resid 0.0003761209
## ... Similar to previous best
## Run 153 stress 0.05254587
## Run 154 stress 0.05882321
## Run 155 stress 0.05986313
## Run 156 stress 0.0753221
## Run 157 stress 0.05833664
## Run 158 stress 0.06045999
## Run 159 stress 0.05882329
## Run 160 stress 0.06686162
## Run 161 stress 0.06045996
## Run 162 stress 0.05164046
## ... Procrustes: rmse 4.735445e-05 max resid 0.0001080575
## ... Similar to previous best
## Run 163 stress 0.07092778
## Run 164 stress 0.05925176
## Run 165 stress 0.06045996
## Run 166 stress 0.05254593
## Run 167 stress 0.05986303
## Run 168 stress 0.05833664
## Run 169 stress 0.06948381
## Run 170 stress 0.06884601
## Run 171 stress 0.07092783
## Run 172 stress 0.06681501
## Run 173 stress 0.06237456
## Run 174 stress 0.0516405
## ... Procrustes: rmse 9.146285e-05 max resid 0.0002070064
## ... Similar to previous best
## Run 175 stress 0.06045996
## Run 176 stress 0.06338442
## Run 177 stress 0.05254592
## Run 178 stress 0.06683378
## Run 179 stress 0.06741529
## Run 180 stress 0.05254601
## Run 181 stress 0.06047336
## Run 182 stress 0.06852403
## Run 183 stress 0.06139661
## Run 184 stress 0.06686149
## Run 185 stress 0.06213231
## Run 186 stress 0.06069816
## Run 187 stress 0.05882322
## Run 188 stress 0.071104
## Run 189 stress 0.05882331
## Run 190 stress 0.06495322
## Run 191 stress 0.05986305
## Run 192 stress 0.07417943
## Run 193 stress 0.06296568
## Run 194 stress 0.06953325
## Run 195 stress 0.0649533
## Run 196 stress 0.05986312
## Run 197 stress 0.06069819
## Run 198 stress 0.05833664
## Run 199 stress 0.05882321
## Run 200 stress 0.07187086
## Run 201 stress 0.061975
## Run 202 stress 0.06124123
## Run 203 stress 0.05164048
## ... Procrustes: rmse 7.187076e-05 max resid 0.0002307871
## ... Similar to previous best
## Run 204 stress 0.06069825
## Run 205 stress 0.05435834
## Run 206 stress 0.0516405
## ... Procrustes: rmse 0.0001527361 max resid 0.0003373825
## ... Similar to previous best
## Run 207 stress 0.05164049
## ... Procrustes: rmse 7.109276e-05 max resid 0.0001517037
## ... Similar to previous best
## Run 208 stress 0.06741523
## Run 209 stress 0.0588232
## Run 210 stress 0.06213239
## Run 211 stress 0.06688862
## Run 212 stress 0.06495323
## Run 213 stress 0.06197572
## Run 214 stress 0.06129267
## Run 215 stress 0.05254597
## Run 216 stress 0.05254597
## Run 217 stress 0.06197566
## Run 218 stress 0.06751082
## Run 219 stress 0.05254593
## Run 220 stress 0.05164046
## ... Procrustes: rmse 5.397242e-05 max resid 0.0001235392
## ... Similar to previous best
## Run 221 stress 0.05164045
## ... Procrustes: rmse 0.0001089014 max resid 0.000274831
## ... Similar to previous best
## Run 222 stress 0.06711896
## Run 223 stress 0.0623327
## Run 224 stress 0.07187086
## Run 225 stress 0.05164057
## ... Procrustes: rmse 0.0001426958 max resid 0.0003258264
## ... Similar to previous best
## Run 226 stress 0.05833671
## Run 227 stress 0.05254584
## Run 228 stress 0.05164045
## ... Procrustes: rmse 0.0001240121 max resid 0.0002495575
## ... Similar to previous best
## Run 229 stress 0.06197543
## Run 230 stress 0.06645973
## Run 231 stress 0.06069815
## Run 232 stress 0.06797299
## Run 233 stress 0.06045996
## Run 234 stress 0.05254578
## Run 235 stress 0.05986306
## Run 236 stress 0.05164052
## ... Procrustes: rmse 0.0001374049 max resid 0.0002851103
## ... Similar to previous best
## Run 237 stress 0.06296549
## Run 238 stress 0.05919885
## Run 239 stress 0.05254589
## Run 240 stress 0.05254583
## Run 241 stress 0.05164045
## ... Procrustes: rmse 2.557779e-05 max resid 5.71182e-05
## ... Similar to previous best
## Run 242 stress 0.05986302
## Run 243 stress 0.06213228
## Run 244 stress 0.06495321
## Run 245 stress 0.0588232
## Run 246 stress 0.0583366
## Run 247 stress 0.05164044
## ... Procrustes: rmse 1.813991e-05 max resid 4.115094e-05
## ... Similar to previous best
## Run 248 stress 0.0603449
## Run 249 stress 0.06739937
## Run 250 stress 0.07097706
## Run 251 stress 0.05833669
## Run 252 stress 0.05164054
## ... Procrustes: rmse 0.000120619 max resid 0.0002759804
## ... Similar to previous best
## Run 253 stress 0.05164043
## ... New best solution
## ... Procrustes: rmse 7.633679e-05 max resid 0.0001512195
## ... Similar to previous best
## Run 254 stress 0.06046
## Run 255 stress 0.07305242
## Run 256 stress 0.05435841
## Run 257 stress 0.06364089
## Run 258 stress 0.06984346
## Run 259 stress 0.05986303
## Run 260 stress 0.05164044
## ... Procrustes: rmse 8.327983e-05 max resid 0.000165442
## ... Similar to previous best
## Run 261 stress 0.0516405
## ... Procrustes: rmse 0.0001620477 max resid 0.0003184768
## ... Similar to previous best
## Run 262 stress 0.06011618
## Run 263 stress 0.05164054
## ... Procrustes: rmse 0.0001884223 max resid 0.0003784223
## ... Similar to previous best
## Run 264 stress 0.05164044
## ... Procrustes: rmse 8.255705e-05 max resid 0.000163305
## ... Similar to previous best
## Run 265 stress 0.06705322
## Run 266 stress 0.07092777
## Run 267 stress 0.05254577
## Run 268 stress 0.0588232
## Run 269 stress 0.05833669
## Run 270 stress 0.05833665
## Run 271 stress 0.05986304
## Run 272 stress 0.05833662
## Run 273 stress 0.05925178
## Run 274 stress 0.05164046
## ... Procrustes: rmse 0.0001235711 max resid 0.0002378331
## ... Similar to previous best
## Run 275 stress 0.06842835
## Run 276 stress 0.06686153
## Run 277 stress 0.05254596
## Run 278 stress 0.06069826
## Run 279 stress 0.05254582
## Run 280 stress 0.06197539
## Run 281 stress 0.06041701
## Run 282 stress 0.06034489
## Run 283 stress 0.05164042
## ... New best solution
## ... Procrustes: rmse 3.264351e-05 max resid 6.642585e-05
## ... Similar to previous best
## Run 284 stress 0.05882321
## Run 285 stress 0.06034497
## Run 286 stress 0.05833664
## Run 287 stress 0.06904461
## Run 288 stress 0.06197536
## Run 289 stress 0.06076578
## Run 290 stress 0.06495321
## Run 291 stress 0.06045998
## Run 292 stress 0.06034493
## Run 293 stress 0.06069821
## Run 294 stress 0.05164058
## ... Procrustes: rmse 0.0001984978 max resid 0.0004465646
## ... Similar to previous best
## Run 295 stress 0.06705326
## Run 296 stress 0.05833662
## Run 297 stress 0.05164044
## ... Procrustes: rmse 5.783559e-05 max resid 0.0001892404
## ... Similar to previous best
## Run 298 stress 0.06495321
## Run 299 stress 0.0588232
## Run 300 stress 0.06047326
## Run 301 stress 0.05986307
## Run 302 stress 0.06852388
## Run 303 stress 0.07049481
## Run 304 stress 0.06645961
## Run 305 stress 0.05164048
## ... Procrustes: rmse 0.0001161492 max resid 0.0002609516
## ... Similar to previous best
## Run 306 stress 0.06495328
## Run 307 stress 0.07417947
## Run 308 stress 0.05833663
## Run 309 stress 0.07227081
## Run 310 stress 0.07083084
## Run 311 stress 0.06501986
## Run 312 stress 0.05254588
## Run 313 stress 0.05164059
## ... Procrustes: rmse 0.0002044316 max resid 0.0004618716
## ... Similar to previous best
## Run 314 stress 0.06296573
## Run 315 stress 0.05164054
## ... Procrustes: rmse 0.0001708953 max resid 0.0003845137
## ... Similar to previous best
## Run 316 stress 0.05833661
## Run 317 stress 0.0607548
## Run 318 stress 0.05164045
## ... Procrustes: rmse 8.592858e-05 max resid 0.0001932511
## ... Similar to previous best
## Run 319 stress 0.06159188
## Run 320 stress 0.07350645
## Run 321 stress 0.0621324
## Run 322 stress 0.07219913
## Run 323 stress 0.05833662
## Run 324 stress 0.06233276
## Run 325 stress 0.06011618
## Run 326 stress 0.05919862
## Run 327 stress 0.05254609
## Run 328 stress 0.06842831
## Run 329 stress 0.06046006
## Run 330 stress 0.0516406
## ... Procrustes: rmse 0.0001849486 max resid 0.0004110825
## ... Similar to previous best
## Run 331 stress 0.06047326
## Run 332 stress 0.0658153
## Run 333 stress 0.06011619
## Run 334 stress 0.0587359
## Run 335 stress 0.06047317
## Run 336 stress 0.06075489
## Run 337 stress 0.05833668
## Run 338 stress 0.06737705
## Run 339 stress 0.06034489
## Run 340 stress 0.05833669
## Run 341 stress 0.05833666
## Run 342 stress 0.06711886
## Run 343 stress 0.06129263
## Run 344 stress 0.07009201
## Run 345 stress 0.0709771
## Run 346 stress 0.0604732
## Run 347 stress 0.05164049
## ... Procrustes: rmse 0.0001308622 max resid 0.0002934268
## ... Similar to previous best
## Run 348 stress 0.068047
## Run 349 stress 0.06739931
## Run 350 stress 0.05254594
## Run 351 stress 0.05435835
## Run 352 stress 0.07265265
## Run 353 stress 0.07305238
## Run 354 stress 0.05164044
## ... Procrustes: rmse 7.513309e-05 max resid 0.0001675824
## ... Similar to previous best
## Run 355 stress 0.05164047
## ... Procrustes: rmse 0.0001003218 max resid 0.0002009942
## ... Similar to previous best
## Run 356 stress 0.05833663
## Run 357 stress 0.06296569
## Run 358 stress 0.06034492
## Run 359 stress 0.05254584
## Run 360 stress 0.05833675
## Run 361 stress 0.06069813
## Run 362 stress 0.05435837
## Run 363 stress 0.0516405
## ... Procrustes: rmse 0.0001374511 max resid 0.0003085218
## ... Similar to previous best
## Run 364 stress 0.06338459
## Run 365 stress 0.0607548
## Run 366 stress 0.05164044
## ... Procrustes: rmse 6.966261e-05 max resid 0.0001544007
## ... Similar to previous best
## Run 367 stress 0.06732448
## Run 368 stress 0.05986303
## Run 369 stress 0.07092777
## Run 370 stress 0.06495324
## Run 371 stress 0.05164052
## ... Procrustes: rmse 0.000155852 max resid 0.0003492378
## ... Similar to previous best
## Run 372 stress 0.06495321
## Run 373 stress 0.05833665
## Run 374 stress 0.05435839
## Run 375 stress 0.07187086
## Run 376 stress 0.06047329
## Run 377 stress 0.06454834
## Run 378 stress 0.07256818
## Run 379 stress 0.05833673
## Run 380 stress 0.06904437
## Run 381 stress 0.06495322
## Run 382 stress 0.05164054
## ... Procrustes: rmse 0.0001751838 max resid 0.0003942175
## ... Similar to previous best
## Run 383 stress 0.05164043
## ... Procrustes: rmse 2.809514e-05 max resid 5.070456e-05
## ... Similar to previous best
## Run 384 stress 0.05925145
## Run 385 stress 0.05164047
## ... Procrustes: rmse 0.000115909 max resid 0.000262362
## ... Similar to previous best
## Run 386 stress 0.07299887
## Run 387 stress 0.05164045
## ... Procrustes: rmse 8.278255e-05 max resid 0.0001859987
## ... Similar to previous best
## Run 388 stress 0.05254591
## Run 389 stress 0.05925115
## Run 390 stress 0.05919858
## Run 391 stress 0.05833663
## Run 392 stress 0.06045995
## Run 393 stress 0.05254594
## Run 394 stress 0.06069821
## Run 395 stress 0.05164044
## ... Procrustes: rmse 6.962052e-05 max resid 0.0001592216
## ... Similar to previous best
## Run 396 stress 0.06047314
## Run 397 stress 0.3460975
## Run 398 stress 0.05164044
## ... Procrustes: rmse 4.718717e-05 max resid 0.0001169602
## ... Similar to previous best
## Run 399 stress 0.07202686
## Run 400 stress 0.06233269
## Run 401 stress 0.05986306
## Run 402 stress 0.07049495
## Run 403 stress 0.06673864
## Run 404 stress 0.05164043
## ... Procrustes: rmse 3.478087e-05 max resid 5.719011e-05
## ... Similar to previous best
## Run 405 stress 0.05254591
## Run 406 stress 0.06874201
## Run 407 stress 0.06045995
## Run 408 stress 0.06683359
## Run 409 stress 0.05925152
## Run 410 stress 0.06197501
## Run 411 stress 0.06495326
## Run 412 stress 0.05164042
## ... Procrustes: rmse 1.217591e-05 max resid 3.338891e-05
## ... Similar to previous best
## Run 413 stress 0.06124123
## Run 414 stress 0.05833668
## Run 415 stress 0.05833662
## Run 416 stress 0.06011618
## Run 417 stress 0.05882321
## Run 418 stress 0.05254583
## Run 419 stress 0.05164055
## ... Procrustes: rmse 0.0001780741 max resid 0.0004018458
## ... Similar to previous best
## Run 420 stress 0.05435837
## Run 421 stress 0.05164048
## ... Procrustes: rmse 0.0001175478 max resid 0.0002660725
## ... Similar to previous best
## Run 422 stress 0.05254581
## Run 423 stress 0.0588232
## Run 424 stress 0.05254595
## Run 425 stress 0.05254598
## Run 426 stress 0.060417
## Run 427 stress 0.07256822
## Run 428 stress 0.06045995
## Run 429 stress 0.05986311
## Run 430 stress 0.06034489
## Run 431 stress 0.06981706
## Run 432 stress 0.07187086
## Run 433 stress 0.05882321
## Run 434 stress 0.06705336
## Run 435 stress 0.06045998
## Run 436 stress 0.06852392
## Run 437 stress 0.06045999
## Run 438 stress 0.06296544
## Run 439 stress 0.0619757
## Run 440 stress 0.07417947
## Run 441 stress 0.0636409
## Run 442 stress 0.05925174
## Run 443 stress 0.05833663
## Run 444 stress 0.06045996
## Run 445 stress 0.05254578
## Run 446 stress 0.07305238
## Run 447 stress 0.06069816
## Run 448 stress 0.06237429
## Run 449 stress 0.06233269
## Run 450 stress 0.06213239
## Run 451 stress 0.06069818
## Run 452 stress 0.0607654
## Run 453 stress 0.05435835
## Run 454 stress 0.06741529
## Run 455 stress 0.07415316
## Run 456 stress 0.06069817
## Run 457 stress 0.06737697
## Run 458 stress 0.06981692
## Run 459 stress 0.06495319
## Run 460 stress 0.05164057
## ... Procrustes: rmse 0.000194936 max resid 0.0004393789
## ... Similar to previous best
## Run 461 stress 0.06904439
## Run 462 stress 0.06296552
## Run 463 stress 0.06705314
## Run 464 stress 0.07049483
## Run 465 stress 0.06011618
## Run 466 stress 0.05882321
## Run 467 stress 0.06981714
## Run 468 stress 0.06045996
## Run 469 stress 0.06197536
## Run 470 stress 0.06501977
## Run 471 stress 0.05986305
## Run 472 stress 0.06495328
## Run 473 stress 0.0588232
## Run 474 stress 0.07141462
## Run 475 stress 0.06296555
## Run 476 stress 0.05254582
## Run 477 stress 0.05833665
## Run 478 stress 0.06011618
## Run 479 stress 0.07202675
## Run 480 stress 0.06087817
## Run 481 stress 0.05164049
## ... Procrustes: rmse 0.0001276127 max resid 0.0002875181
## ... Similar to previous best
## Run 482 stress 0.06045997
## Run 483 stress 0.05833665
## Run 484 stress 0.07256819
## Run 485 stress 0.06197504
## Run 486 stress 0.06233269
## Run 487 stress 0.0543584
## Run 488 stress 0.05164059
## ... Procrustes: rmse 0.000180306 max resid 0.0004030514
## ... Similar to previous best
## Run 489 stress 0.06139664
## Run 490 stress 0.07299888
## Run 491 stress 0.06159183
## Run 492 stress 0.05833662
## Run 493 stress 0.05986306
## Run 494 stress 0.05164046
## ... Procrustes: rmse 0.0001051809 max resid 0.0002340216
## ... Similar to previous best
## Run 495 stress 0.05164042
## ... Procrustes: rmse 1.34332e-05 max resid 3.082632e-05
## ... Similar to previous best
## Run 496 stress 0.05164053
## ... Procrustes: rmse 0.0001655925 max resid 0.0003709751
## ... Similar to previous best
## Run 497 stress 0.05164042
## ... New best solution
## ... Procrustes: rmse 8.959587e-06 max resid 2.641724e-05
## ... Similar to previous best
## Run 498 stress 0.06495327
## Run 499 stress 0.06826172
## Run 500 stress 0.06233269
## *** Best solution repeated 1 times# Ocean sites and mixed lakes
pdeom_NMDS <- metaMDS(pdeom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.07947529
## Run 1 stress 0.0794767
## ... Procrustes: rmse 0.005157121 max resid 0.01243623
## Run 2 stress 0.07947678
## ... Procrustes: rmse 0.005096456 max resid 0.01228501
## Run 3 stress 0.07947646
## ... Procrustes: rmse 0.006199677 max resid 0.0150551
## Run 4 stress 0.07947531
## ... Procrustes: rmse 6.863664e-05 max resid 0.0001661852
## ... Similar to previous best
## Run 5 stress 0.07947531
## ... Procrustes: rmse 8.225189e-05 max resid 0.0002009549
## ... Similar to previous best
## Run 6 stress 0.3160766
## Run 7 stress 0.07947532
## ... Procrustes: rmse 9.735671e-05 max resid 0.0002342267
## ... Similar to previous best
## Run 8 stress 0.07947531
## ... Procrustes: rmse 0.0002150205 max resid 0.0005231264
## ... Similar to previous best
## Run 9 stress 0.07947532
## ... Procrustes: rmse 0.0001046149 max resid 0.0002537269
## ... Similar to previous best
## Run 10 stress 0.07947531
## ... Procrustes: rmse 6.47162e-05 max resid 0.000157365
## ... Similar to previous best
## Run 11 stress 0.07947529
## ... Procrustes: rmse 3.375251e-05 max resid 8.059501e-05
## ... Similar to previous best
## Run 12 stress 0.07947643
## ... Procrustes: rmse 0.00614378 max resid 0.01491713
## Run 13 stress 0.07947869
## ... Procrustes: rmse 0.003638903 max resid 0.008691486
## ... Similar to previous best
## Run 14 stress 0.0794753
## ... Procrustes: rmse 4.452205e-05 max resid 0.000106122
## ... Similar to previous best
## Run 15 stress 0.07947528
## ... New best solution
## ... Procrustes: rmse 1.15184e-05 max resid 2.081387e-05
## ... Similar to previous best
## Run 16 stress 0.3403702
## Run 17 stress 0.07947652
## ... Procrustes: rmse 0.006262769 max resid 0.01521456
## Run 18 stress 0.07947535
## ... Procrustes: rmse 0.000150822 max resid 0.0003691662
## ... Similar to previous best
## Run 19 stress 0.07947651
## ... Procrustes: rmse 0.005361743 max resid 0.01295043
## Run 20 stress 0.07947529
## ... Procrustes: rmse 4.255306e-05 max resid 0.0001048272
## ... Similar to previous best
## Run 21 stress 0.07947649
## ... Procrustes: rmse 0.006202073 max resid 0.01506333
## Run 22 stress 0.07947637
## ... Procrustes: rmse 0.006053651 max resid 0.01468863
## Run 23 stress 0.07947739
## ... Procrustes: rmse 0.004566473 max resid 0.01095274
## Run 24 stress 0.07947631
## ... Procrustes: rmse 0.005850646 max resid 0.01417833
## Run 25 stress 0.0794754
## ... Procrustes: rmse 0.0002150619 max resid 0.0005230213
## ... Similar to previous best
## Run 26 stress 0.07947528
## ... New best solution
## ... Procrustes: rmse 3.955847e-05 max resid 9.360453e-05
## ... Similar to previous best
## Run 27 stress 0.3262953
## Run 28 stress 0.07947529
## ... Procrustes: rmse 7.14085e-05 max resid 0.0001738276
## ... Similar to previous best
## Run 29 stress 0.07947649
## ... Procrustes: rmse 0.006189477 max resid 0.01503183
## Run 30 stress 0.07947638
## ... Procrustes: rmse 0.006004656 max resid 0.01456956
## Run 31 stress 0.3042249
## Run 32 stress 0.07947532
## ... Procrustes: rmse 0.0001116604 max resid 0.0002721202
## ... Similar to previous best
## Run 33 stress 0.07947528
## ... Procrustes: rmse 2.688824e-05 max resid 6.466252e-05
## ... Similar to previous best
## Run 34 stress 0.07947649
## ... Procrustes: rmse 0.005389445 max resid 0.01302009
## Run 35 stress 0.07947529
## ... Procrustes: rmse 4.768672e-05 max resid 0.0001151854
## ... Similar to previous best
## Run 36 stress 0.07947635
## ... Procrustes: rmse 0.005979259 max resid 0.01450302
## Run 37 stress 0.07947528
## ... Procrustes: rmse 3.41688e-05 max resid 8.35367e-05
## ... Similar to previous best
## Run 38 stress 0.0794765
## ... Procrustes: rmse 0.006180683 max resid 0.01500836
## Run 39 stress 0.07947529
## ... Procrustes: rmse 7.683367e-05 max resid 0.0001866126
## ... Similar to previous best
## Run 40 stress 0.07947534
## ... Procrustes: rmse 0.0001833099 max resid 0.0004470428
## ... Similar to previous best
## Run 41 stress 0.07947632
## ... Procrustes: rmse 0.005739691 max resid 0.01390103
## Run 42 stress 0.3407338
## Run 43 stress 0.07947643
## ... Procrustes: rmse 0.005440519 max resid 0.01315053
## Run 44 stress 0.1966885
## Run 45 stress 0.0794765
## ... Procrustes: rmse 0.006200345 max resid 0.0150589
## Run 46 stress 0.3174257
## Run 47 stress 0.07947528
## ... New best solution
## ... Procrustes: rmse 2.365111e-05 max resid 5.596386e-05
## ... Similar to previous best
## Run 48 stress 0.07947639
## ... Procrustes: rmse 0.006038297 max resid 0.01465388
## Run 49 stress 0.07947531
## ... Procrustes: rmse 5.757784e-05 max resid 0.0001438273
## ... Similar to previous best
## Run 50 stress 0.07947648
## ... Procrustes: rmse 0.006101489 max resid 0.01481229
## Run 51 stress 0.07947682
## ... Procrustes: rmse 0.004971863 max resid 0.01197579
## Run 52 stress 0.07947644
## ... Procrustes: rmse 0.00610935 max resid 0.014833
## Run 53 stress 0.07947688
## ... Procrustes: rmse 0.004989163 max resid 0.0120141
## Run 54 stress 0.07947531
## ... Procrustes: rmse 0.000151807 max resid 0.0003694953
## ... Similar to previous best
## Run 55 stress 0.07947699
## ... Procrustes: rmse 0.004839267 max resid 0.01164308
## Run 56 stress 0.07947533
## ... Procrustes: rmse 0.0001749544 max resid 0.0004260408
## ... Similar to previous best
## Run 57 stress 0.07947635
## ... Procrustes: rmse 0.005953591 max resid 0.01444297
## Run 58 stress 0.07947642
## ... Procrustes: rmse 0.006091122 max resid 0.01478726
## Run 59 stress 0.07947649
## ... Procrustes: rmse 0.006161032 max resid 0.01496296
## Run 60 stress 0.0794766
## ... Procrustes: rmse 0.006271439 max resid 0.01524034
## Run 61 stress 0.07947632
## ... Procrustes: rmse 0.005725388 max resid 0.01386754
## Run 62 stress 0.07947535
## ... Procrustes: rmse 0.0001930832 max resid 0.0004703904
## ... Similar to previous best
## Run 63 stress 0.07947642
## ... Procrustes: rmse 0.006082274 max resid 0.01476482
## Run 64 stress 0.07947529
## ... Procrustes: rmse 8.442479e-05 max resid 0.0002055281
## ... Similar to previous best
## Run 65 stress 0.07947893
## ... Procrustes: rmse 0.002834108 max resid 0.006788327
## ... Similar to previous best
## Run 66 stress 0.07947528
## ... Procrustes: rmse 4.065413e-05 max resid 0.0001113175
## ... Similar to previous best
## Run 67 stress 0.3010202
## Run 68 stress 0.1916271
## Run 69 stress 0.1916272
## Run 70 stress 0.07947643
## ... Procrustes: rmse 0.006097262 max resid 0.0148032
## Run 71 stress 0.07947636
## ... Procrustes: rmse 0.005912115 max resid 0.01433846
## Run 72 stress 0.07947763
## ... Procrustes: rmse 0.004333842 max resid 0.01037575
## Run 73 stress 0.07947763
## ... Procrustes: rmse 0.004327263 max resid 0.01035919
## Run 74 stress 0.07947706
## ... Procrustes: rmse 0.00475878 max resid 0.01144062
## Run 75 stress 0.07947648
## ... Procrustes: rmse 0.006158741 max resid 0.01495736
## Run 76 stress 0.07947632
## ... Procrustes: rmse 0.0058273 max resid 0.01412608
## Run 77 stress 0.07947589
## ... Procrustes: rmse 0.0007258368 max resid 0.001758583
## ... Similar to previous best
## Run 78 stress 0.0794753
## ... Procrustes: rmse 0.0001296954 max resid 0.0003160521
## ... Similar to previous best
## Run 79 stress 0.07947661
## ... Procrustes: rmse 0.006280938 max resid 0.01526432
## Run 80 stress 0.07947528
## ... Procrustes: rmse 2.609069e-05 max resid 6.355538e-05
## ... Similar to previous best
## Run 81 stress 0.07947531
## ... Procrustes: rmse 0.0001353014 max resid 0.0003297829
## ... Similar to previous best
## Run 82 stress 0.07947814
## ... Procrustes: rmse 0.002010286 max resid 0.004834677
## ... Similar to previous best
## Run 83 stress 0.07947655
## ... Procrustes: rmse 0.006226047 max resid 0.01512526
## Run 84 stress 0.07947645
## ... Procrustes: rmse 0.006123049 max resid 0.01486766
## Run 85 stress 0.07947661
## ... Procrustes: rmse 0.005175186 max resid 0.01248709
## Run 86 stress 0.0794753
## ... Procrustes: rmse 0.0001208334 max resid 0.0002944959
## ... Similar to previous best
## Run 87 stress 0.07947667
## ... Procrustes: rmse 0.006321844 max resid 0.01536774
## Run 88 stress 0.07947536
## ... Procrustes: rmse 0.0002104031 max resid 0.0005120486
## ... Similar to previous best
## Run 89 stress 0.3174261
## Run 90 stress 0.07947745
## ... Procrustes: rmse 0.004464704 max resid 0.01070401
## Run 91 stress 0.07947673
## ... Procrustes: rmse 0.005056862 max resid 0.01218965
## Run 92 stress 0.07947633
## ... Procrustes: rmse 0.00588678 max resid 0.01427397
## Run 93 stress 0.07947635
## ... Procrustes: rmse 0.005933508 max resid 0.01439096
## Run 94 stress 0.07947646
## ... Procrustes: rmse 0.006133779 max resid 0.01489584
## Run 95 stress 0.07947644
## ... Procrustes: rmse 0.005395704 max resid 0.01304079
## Run 96 stress 0.07947649
## ... Procrustes: rmse 0.006142189 max resid 0.01491453
## Run 97 stress 0.07947799
## ... Procrustes: rmse 0.004078488 max resid 0.009738111
## ... Similar to previous best
## Run 98 stress 0.07947531
## ... Procrustes: rmse 0.0001397961 max resid 0.0003409466
## ... Similar to previous best
## Run 99 stress 0.07947648
## ... Procrustes: rmse 0.006158445 max resid 0.01495697
## Run 100 stress 0.07947771
## ... Procrustes: rmse 0.00427617 max resid 0.01022875
## Run 101 stress 0.07947533
## ... Procrustes: rmse 0.000187699 max resid 0.0004598018
## ... Similar to previous best
## Run 102 stress 0.07947642
## ... Procrustes: rmse 0.006092791 max resid 0.01479153
## Run 103 stress 0.07947658
## ... Procrustes: rmse 0.006130436 max resid 0.01488886
## Run 104 stress 0.07947532
## ... Procrustes: rmse 0.0001644554 max resid 0.0004011173
## ... Similar to previous best
## Run 105 stress 0.07947897
## ... Procrustes: rmse 0.003000402 max resid 0.007182038
## ... Similar to previous best
## Run 106 stress 0.07947657
## ... Procrustes: rmse 0.005223364 max resid 0.01260766
## Run 107 stress 0.07947705
## ... Procrustes: rmse 0.004779137 max resid 0.01149374
## Run 108 stress 0.07947529
## ... Procrustes: rmse 8.180201e-05 max resid 0.000198747
## ... Similar to previous best
## Run 109 stress 0.07947533
## ... Procrustes: rmse 0.0002029833 max resid 0.0004936584
## ... Similar to previous best
## Run 110 stress 0.07947532
## ... Procrustes: rmse 0.0001536091 max resid 0.0003736681
## ... Similar to previous best
## Run 111 stress 0.07947532
## ... Procrustes: rmse 6.084206e-05 max resid 0.0001339292
## ... Similar to previous best
## Run 112 stress 0.07947644
## ... Procrustes: rmse 0.006104319 max resid 0.01482068
## Run 113 stress 0.07947632
## ... Procrustes: rmse 0.005846441 max resid 0.01417292
## Run 114 stress 0.0794764
## ... Procrustes: rmse 0.006045088 max resid 0.01467176
## Run 115 stress 0.07947662
## ... Procrustes: rmse 0.006286769 max resid 0.01527864
## Run 116 stress 0.0794772
## ... Procrustes: rmse 0.004652358 max resid 0.01117356
## Run 117 stress 0.07947643
## ... Procrustes: rmse 0.006076635 max resid 0.01475004
## Run 118 stress 0.07947635
## ... Procrustes: rmse 0.005944071 max resid 0.01442015
## Run 119 stress 0.07947729
## ... Procrustes: rmse 0.004581855 max resid 0.01099608
## Run 120 stress 0.1916272
## Run 121 stress 0.07947528
## ... Procrustes: rmse 1.318573e-05 max resid 3.198178e-05
## ... Similar to previous best
## Run 122 stress 0.07947695
## ... Procrustes: rmse 0.004852196 max resid 0.01167526
## Run 123 stress 0.1916274
## Run 124 stress 0.07947535
## ... Procrustes: rmse 0.0002076731 max resid 0.0005063878
## ... Similar to previous best
## Run 125 stress 0.191627
## Run 126 stress 0.07947558
## ... Procrustes: rmse 0.0004912359 max resid 0.001192315
## ... Similar to previous best
## Run 127 stress 0.07947829
## ... Procrustes: rmse 0.003874171 max resid 0.009237177
## ... Similar to previous best
## Run 128 stress 0.07947536
## ... Procrustes: rmse 0.0002220317 max resid 0.0005384894
## ... Similar to previous best
## Run 129 stress 0.07947637
## ... Procrustes: rmse 0.006008469 max resid 0.01457896
## Run 130 stress 0.07947868
## ... Procrustes: rmse 0.003580509 max resid 0.008547861
## ... Similar to previous best
## Run 131 stress 0.1916275
## Run 132 stress 0.07947653
## ... Procrustes: rmse 0.006144511 max resid 0.0149198
## Run 133 stress 0.0794753
## ... Procrustes: rmse 0.0001206032 max resid 0.000292532
## ... Similar to previous best
## Run 134 stress 0.07947528
## ... Procrustes: rmse 2.105059e-05 max resid 5.111519e-05
## ... Similar to previous best
## Run 135 stress 0.07947534
## ... Procrustes: rmse 0.0001844589 max resid 0.0004471223
## ... Similar to previous best
## Run 136 stress 0.07947534
## ... Procrustes: rmse 0.0001997502 max resid 0.0004871619
## ... Similar to previous best
## Run 137 stress 0.07947656
## ... Procrustes: rmse 0.00624041 max resid 0.01516193
## Run 138 stress 0.07947645
## ... Procrustes: rmse 0.006122762 max resid 0.01486685
## Run 139 stress 0.07947687
## ... Procrustes: rmse 0.004924743 max resid 0.01185742
## Run 140 stress 0.07947528
## ... Procrustes: rmse 5.074253e-05 max resid 0.0001228962
## ... Similar to previous best
## Run 141 stress 0.07947528
## ... Procrustes: rmse 4.383338e-05 max resid 0.0001066236
## ... Similar to previous best
## Run 142 stress 0.07947636
## ... Procrustes: rmse 0.005971075 max resid 0.01448648
## Run 143 stress 0.07947636
## ... Procrustes: rmse 0.00598021 max resid 0.01450864
## Run 144 stress 0.1916275
## Run 145 stress 0.07947643
## ... Procrustes: rmse 0.006094211 max resid 0.01479545
## Run 146 stress 0.0794753
## ... Procrustes: rmse 0.0001087921 max resid 0.0002636237
## ... Similar to previous best
## Run 147 stress 0.07947709
## ... Procrustes: rmse 0.00473997 max resid 0.01139371
## Run 148 stress 0.07947528
## ... Procrustes: rmse 5.138918e-05 max resid 0.0001244592
## ... Similar to previous best
## Run 149 stress 0.07947531
## ... Procrustes: rmse 0.0001540433 max resid 0.0003756107
## ... Similar to previous best
## Run 150 stress 0.07947631
## ... Procrustes: rmse 0.005756876 max resid 0.01394695
## Run 151 stress 0.07947638
## ... Procrustes: rmse 0.005997364 max resid 0.01455469
## Run 152 stress 0.07947646
## ... Procrustes: rmse 0.006141218 max resid 0.01491315
## Run 153 stress 0.07947635
## ... Procrustes: rmse 0.005968381 max resid 0.01447899
## Run 154 stress 0.07947529
## ... Procrustes: rmse 9.087961e-05 max resid 0.0002218181
## ... Similar to previous best
## Run 155 stress 0.07947646
## ... Procrustes: rmse 0.006121247 max resid 0.01486361
## Run 156 stress 0.0794765
## ... Procrustes: rmse 0.006179955 max resid 0.01501212
## Run 157 stress 0.0794766
## ... Procrustes: rmse 0.00625702 max resid 0.01520507
## Run 158 stress 0.07947896
## ... Procrustes: rmse 0.003126973 max resid 0.007479072
## ... Similar to previous best
## Run 159 stress 0.07947633
## ... Procrustes: rmse 0.005883699 max resid 0.01426622
## Run 160 stress 0.07947643
## ... Procrustes: rmse 0.006095223 max resid 0.0147981
## Run 161 stress 0.3125652
## Run 162 stress 0.07947645
## ... Procrustes: rmse 0.00612095 max resid 0.01486226
## Run 163 stress 0.07947529
## ... Procrustes: rmse 8.455763e-05 max resid 0.000203851
## ... Similar to previous best
## Run 164 stress 0.07947655
## ... Procrustes: rmse 0.006231703 max resid 0.01514083
## Run 165 stress 0.07947532
## ... Procrustes: rmse 0.0001615421 max resid 0.0003924468
## ... Similar to previous best
## Run 166 stress 0.07947536
## ... Procrustes: rmse 0.0002281883 max resid 0.0005566374
## ... Similar to previous best
## Run 167 stress 0.07947529
## ... Procrustes: rmse 6.666583e-05 max resid 0.0001623609
## ... Similar to previous best
## Run 168 stress 0.07947537
## ... Procrustes: rmse 0.0002416729 max resid 0.0005904099
## ... Similar to previous best
## Run 169 stress 0.07947528
## ... Procrustes: rmse 6.267369e-05 max resid 0.0001525504
## ... Similar to previous best
## Run 170 stress 0.07947632
## ... Procrustes: rmse 0.005863968 max resid 0.01421673
## Run 171 stress 0.07947639
## ... Procrustes: rmse 0.006024666 max resid 0.01462221
## Run 172 stress 0.07947632
## ... Procrustes: rmse 0.005829888 max resid 0.01413109
## Run 173 stress 0.07947635
## ... Procrustes: rmse 0.005967529 max resid 0.01447681
## Run 174 stress 0.07947531
## ... Procrustes: rmse 0.0001438317 max resid 0.0003524523
## ... Similar to previous best
## Run 175 stress 0.312268
## Run 176 stress 0.07947759
## ... Procrustes: rmse 0.004361238 max resid 0.01044373
## Run 177 stress 0.07947638
## ... Procrustes: rmse 0.006020277 max resid 0.014608
## Run 178 stress 0.07947532
## ... Procrustes: rmse 0.0001570511 max resid 0.0003821103
## ... Similar to previous best
## Run 179 stress 0.0794765
## ... Procrustes: rmse 0.006164811 max resid 0.01497304
## Run 180 stress 0.07947534
## ... Procrustes: rmse 0.0001993959 max resid 0.0004875734
## ... Similar to previous best
## Run 181 stress 0.07947638
## ... Procrustes: rmse 0.006012736 max resid 0.01459051
## Run 182 stress 0.0794772
## ... Procrustes: rmse 0.004653397 max resid 0.01117571
## Run 183 stress 0.07947661
## ... Procrustes: rmse 0.005181128 max resid 0.01250196
## Run 184 stress 0.0794753
## ... Procrustes: rmse 0.000118224 max resid 0.0002889683
## ... Similar to previous best
## Run 185 stress 0.07947643
## ... Procrustes: rmse 0.006102019 max resid 0.01481414
## Run 186 stress 0.07947529
## ... Procrustes: rmse 7.371221e-05 max resid 0.0001791833
## ... Similar to previous best
## Run 187 stress 0.07947637
## ... Procrustes: rmse 0.005995087 max resid 0.01454775
## Run 188 stress 0.07947764
## ... Procrustes: rmse 0.004325339 max resid 0.01035501
## Run 189 stress 0.07947635
## ... Procrustes: rmse 0.005960084 max resid 0.01445815
## Run 190 stress 0.07947646
## ... Procrustes: rmse 0.006082485 max resid 0.01475945
## Run 191 stress 0.07947867
## ... Procrustes: rmse 0.002432556 max resid 0.005839147
## ... Similar to previous best
## Run 192 stress 0.07947663
## ... Procrustes: rmse 0.006250653 max resid 0.01518988
## Run 193 stress 0.0794753
## ... Procrustes: rmse 0.0001135942 max resid 0.0002758111
## ... Similar to previous best
## Run 194 stress 0.191627
## Run 195 stress 0.1966883
## Run 196 stress 0.07947646
## ... Procrustes: rmse 0.006136156 max resid 0.01489988
## Run 197 stress 0.07947642
## ... Procrustes: rmse 0.006089571 max resid 0.01478455
## Run 198 stress 0.07947655
## ... Procrustes: rmse 0.006192491 max resid 0.01504195
## Run 199 stress 0.07947533
## ... Procrustes: rmse 0.0001838241 max resid 0.0004490332
## ... Similar to previous best
## Run 200 stress 0.07947531
## ... Procrustes: rmse 0.0001403939 max resid 0.0003424394
## ... Similar to previous best
## Run 201 stress 0.07947656
## ... Procrustes: rmse 0.005237644 max resid 0.01264355
## Run 202 stress 0.07947641
## ... Procrustes: rmse 0.00606751 max resid 0.01472645
## Run 203 stress 0.07947669
## ... Procrustes: rmse 0.006315379 max resid 0.01535044
## Run 204 stress 0.07947528
## ... Procrustes: rmse 1.511119e-05 max resid 3.021116e-05
## ... Similar to previous best
## Run 205 stress 0.07947531
## ... Procrustes: rmse 0.000148118 max resid 0.0003605379
## ... Similar to previous best
## Run 206 stress 0.07947895
## ... Procrustes: rmse 0.003183198 max resid 0.007613451
## ... Similar to previous best
## Run 207 stress 0.0794781
## ... Procrustes: rmse 0.004003632 max resid 0.009553847
## ... Similar to previous best
## Run 208 stress 0.07947645
## ... Procrustes: rmse 0.006090208 max resid 0.01478528
## Run 209 stress 0.07947528
## ... Procrustes: rmse 3.97266e-05 max resid 9.071665e-05
## ... Similar to previous best
## Run 210 stress 0.0794754
## ... Procrustes: rmse 0.0003087694 max resid 0.0007513366
## ... Similar to previous best
## Run 211 stress 0.07947641
## ... Procrustes: rmse 0.006068548 max resid 0.01473052
## Run 212 stress 0.07947638
## ... Procrustes: rmse 0.005990752 max resid 0.01453431
## Run 213 stress 0.07947636
## ... Procrustes: rmse 0.005989307 max resid 0.01453147
## Run 214 stress 0.07947533
## ... Procrustes: rmse 0.0001886439 max resid 0.0004601573
## ... Similar to previous best
## Run 215 stress 0.07947636
## ... Procrustes: rmse 0.00597353 max resid 0.01449197
## Run 216 stress 0.07947664
## ... Procrustes: rmse 0.006281837 max resid 0.01526655
## Run 217 stress 0.07947895
## ... Procrustes: rmse 0.002873498 max resid 0.006882121
## ... Similar to previous best
## Run 218 stress 0.07947635
## ... Procrustes: rmse 0.005948866 max resid 0.01443027
## Run 219 stress 0.07947529
## ... Procrustes: rmse 8.240012e-05 max resid 0.0002012995
## ... Similar to previous best
## Run 220 stress 0.1916273
## Run 221 stress 0.1916272
## Run 222 stress 0.07947728
## ... Procrustes: rmse 0.004589306 max resid 0.01101475
## Run 223 stress 0.07947656
## ... Procrustes: rmse 0.006227032 max resid 0.01512619
## Run 224 stress 0.07947533
## ... Procrustes: rmse 0.0001782769 max resid 0.0004329963
## ... Similar to previous best
## Run 225 stress 0.07947648
## ... Procrustes: rmse 0.00616097 max resid 0.01496244
## Run 226 stress 0.07947534
## ... Procrustes: rmse 0.0001730053 max resid 0.0004229114
## ... Similar to previous best
## Run 227 stress 0.07947651
## ... Procrustes: rmse 0.00529486 max resid 0.01278758
## Run 228 stress 0.07947631
## ... Procrustes: rmse 0.00580623 max resid 0.01407102
## Run 229 stress 0.0794753
## ... Procrustes: rmse 0.0001229204 max resid 0.0002998856
## ... Similar to previous best
## Run 230 stress 0.3403702
## Run 231 stress 0.07947635
## ... Procrustes: rmse 0.005962491 max resid 0.01446524
## Run 232 stress 0.07947705
## ... Procrustes: rmse 0.004776356 max resid 0.01148688
## Run 233 stress 0.0794753
## ... Procrustes: rmse 0.0001082515 max resid 0.0002638379
## ... Similar to previous best
## Run 234 stress 0.07947637
## ... Procrustes: rmse 0.006000473 max resid 0.01455947
## Run 235 stress 0.07947641
## ... Procrustes: rmse 0.00607118 max resid 0.01473668
## Run 236 stress 0.07947531
## ... Procrustes: rmse 0.0001378014 max resid 0.0003361687
## ... Similar to previous best
## Run 237 stress 0.07947643
## ... Procrustes: rmse 0.006091771 max resid 0.01478908
## Run 238 stress 0.07947636
## ... Procrustes: rmse 0.005558991 max resid 0.01344853
## Run 239 stress 0.07947632
## ... Procrustes: rmse 0.005684256 max resid 0.0137654
## Run 240 stress 0.07947632
## ... Procrustes: rmse 0.00584515 max resid 0.01416942
## Run 241 stress 0.07947643
## ... Procrustes: rmse 0.006099511 max resid 0.01480839
## Run 242 stress 0.0794753
## ... Procrustes: rmse 0.0001202281 max resid 0.0002922616
## ... Similar to previous best
## Run 243 stress 0.07947729
## ... Procrustes: rmse 0.004589209 max resid 0.01101472
## Run 244 stress 0.07947532
## ... Procrustes: rmse 0.0001286725 max resid 0.0003124597
## ... Similar to previous best
## Run 245 stress 0.07947642
## ... Procrustes: rmse 0.006083959 max resid 0.01476868
## Run 246 stress 0.07947658
## ... Procrustes: rmse 0.005215405 max resid 0.01258635
## Run 247 stress 0.07947635
## ... Procrustes: rmse 0.005944633 max resid 0.01441894
## Run 248 stress 0.07947528
## ... Procrustes: rmse 5.054809e-05 max resid 0.0001229967
## ... Similar to previous best
## Run 249 stress 0.07947533
## ... Procrustes: rmse 0.0001777622 max resid 0.0004325109
## ... Similar to previous best
## Run 250 stress 0.07947671
## ... Procrustes: rmse 0.006354017 max resid 0.01544847
## Run 251 stress 0.07947668
## ... Procrustes: rmse 0.006324053 max resid 0.01537332
## Run 252 stress 0.07947529
## ... Procrustes: rmse 8.794362e-05 max resid 0.000213902
## ... Similar to previous best
## Run 253 stress 0.07947655
## ... Procrustes: rmse 0.006226054 max resid 0.01512645
## Run 254 stress 0.07947643
## ... Procrustes: rmse 0.006035701 max resid 0.01464735
## Run 255 stress 0.07947789
## ... Procrustes: rmse 0.004146101 max resid 0.009908402
## ... Similar to previous best
## Run 256 stress 0.07947892
## ... Procrustes: rmse 0.003261708 max resid 0.007797589
## ... Similar to previous best
## Run 257 stress 0.07947529
## ... Procrustes: rmse 9.207698e-05 max resid 0.000224438
## ... Similar to previous best
## Run 258 stress 0.07947646
## ... Procrustes: rmse 0.006135031 max resid 0.01489807
## Run 259 stress 0.07947531
## ... Procrustes: rmse 0.0001535308 max resid 0.0003732982
## ... Similar to previous best
## Run 260 stress 0.07947532
## ... Procrustes: rmse 0.000153663 max resid 0.0003758673
## ... Similar to previous best
## Run 261 stress 0.07947645
## ... Procrustes: rmse 0.005402891 max resid 0.01305915
## Run 262 stress 0.07947591
## ... Procrustes: rmse 0.0006994105 max resid 0.001696213
## ... Similar to previous best
## Run 263 stress 0.0794764
## ... Procrustes: rmse 0.006050834 max resid 0.01468589
## Run 264 stress 0.07947529
## ... Procrustes: rmse 7.570365e-05 max resid 0.0001835841
## ... Similar to previous best
## Run 265 stress 0.07947529
## ... Procrustes: rmse 0.0001019742 max resid 0.0002482905
## ... Similar to previous best
## Run 266 stress 0.07947612
## ... Procrustes: rmse 0.0008710092 max resid 0.002107463
## ... Similar to previous best
## Run 267 stress 0.07947538
## ... Procrustes: rmse 0.0002476106 max resid 0.0006041835
## ... Similar to previous best
## Run 268 stress 0.07947662
## ... Procrustes: rmse 0.006283697 max resid 0.01527093
## Run 269 stress 0.07947529
## ... Procrustes: rmse 7.353046e-05 max resid 0.0001714085
## ... Similar to previous best
## Run 270 stress 0.07947716
## ... Procrustes: rmse 0.004681054 max resid 0.01124547
## Run 271 stress 0.3403702
## Run 272 stress 0.07947897
## ... Procrustes: rmse 0.003052368 max resid 0.00730305
## ... Similar to previous best
## Run 273 stress 0.07947529
## ... Procrustes: rmse 9.979043e-05 max resid 0.0002422192
## ... Similar to previous best
## Run 274 stress 0.07947532
## ... Procrustes: rmse 0.0001547397 max resid 0.0003771393
## ... Similar to previous best
## Run 275 stress 0.07947649
## ... Procrustes: rmse 0.006109783 max resid 0.01482919
## Run 276 stress 0.07947528
## ... Procrustes: rmse 6.913085e-05 max resid 0.0001679072
## ... Similar to previous best
## Run 277 stress 0.07947638
## ... Procrustes: rmse 0.006017514 max resid 0.01460233
## Run 278 stress 0.07947632
## ... Procrustes: rmse 0.005692086 max resid 0.01378138
## Run 279 stress 0.07947528
## ... Procrustes: rmse 5.00004e-05 max resid 0.0001209948
## ... Similar to previous best
## Run 280 stress 0.07947642
## ... Procrustes: rmse 0.006068729 max resid 0.01473206
## Run 281 stress 0.1916275
## Run 282 stress 0.07947559
## ... Procrustes: rmse 0.0005016862 max resid 0.001216443
## ... Similar to previous best
## Run 283 stress 0.07947664
## ... Procrustes: rmse 0.005147928 max resid 0.01241698
## Run 284 stress 0.07947661
## ... Procrustes: rmse 0.006277989 max resid 0.01525698
## Run 285 stress 0.07947804
## ... Procrustes: rmse 0.001960071 max resid 0.004715039
## ... Similar to previous best
## Run 286 stress 0.07947632
## ... Procrustes: rmse 0.005840227 max resid 0.01415509
## Run 287 stress 0.07947638
## ... Procrustes: rmse 0.006015859 max resid 0.01459931
## Run 288 stress 0.07947705
## ... Procrustes: rmse 0.004771657 max resid 0.01147295
## Run 289 stress 0.0794753
## ... Procrustes: rmse 0.0001298099 max resid 0.0003161282
## ... Similar to previous best
## Run 290 stress 0.07947642
## ... Procrustes: rmse 0.006070398 max resid 0.0147356
## Run 291 stress 0.07947553
## ... Procrustes: rmse 0.0004214393 max resid 0.001023881
## ... Similar to previous best
## Run 292 stress 0.302694
## Run 293 stress 0.191627
## Run 294 stress 0.0794756
## ... Procrustes: rmse 0.0004887262 max resid 0.001185801
## ... Similar to previous best
## Run 295 stress 0.0794764
## ... Procrustes: rmse 0.005492649 max resid 0.01328429
## Run 296 stress 0.07947531
## ... Procrustes: rmse 0.000139065 max resid 0.0003400145
## ... Similar to previous best
## Run 297 stress 0.07947661
## ... Procrustes: rmse 0.006281091 max resid 0.01526491
## Run 298 stress 0.07947532
## ... Procrustes: rmse 0.000165918 max resid 0.0004039928
## ... Similar to previous best
## Run 299 stress 0.07947714
## ... Procrustes: rmse 0.004724471 max resid 0.01135548
## Run 300 stress 0.07947529
## ... Procrustes: rmse 9.145828e-05 max resid 0.0002229512
## ... Similar to previous best
## Run 301 stress 0.07947637
## ... Procrustes: rmse 0.00599661 max resid 0.0145497
## Run 302 stress 0.07947639
## ... Procrustes: rmse 0.006043807 max resid 0.01466857
## Run 303 stress 0.07947812
## ... Procrustes: rmse 0.002007773 max resid 0.004828622
## ... Similar to previous best
## Run 304 stress 0.07947529
## ... Procrustes: rmse 8.53221e-05 max resid 0.0002078388
## ... Similar to previous best
## Run 305 stress 0.07947645
## ... Procrustes: rmse 0.006119308 max resid 0.0148587
## Run 306 stress 0.07947532
## ... Procrustes: rmse 0.000170601 max resid 0.0004160751
## ... Similar to previous best
## Run 307 stress 0.07947649
## ... Procrustes: rmse 0.006176068 max resid 0.01500045
## Run 308 stress 0.07947647
## ... Procrustes: rmse 0.00615452 max resid 0.01494635
## Run 309 stress 0.07947661
## ... Procrustes: rmse 0.00627698 max resid 0.01525431
## Run 310 stress 0.07947532
## ... Procrustes: rmse 0.0001461036 max resid 0.0003540607
## ... Similar to previous best
## Run 311 stress 0.07947776
## ... Procrustes: rmse 0.004236591 max resid 0.01013367
## Run 312 stress 0.0794764
## ... Procrustes: rmse 0.006062637 max resid 0.01471548
## Run 313 stress 0.0794779
## ... Procrustes: rmse 0.004144347 max resid 0.009902517
## ... Similar to previous best
## Run 314 stress 0.07947537
## ... Procrustes: rmse 0.00023787 max resid 0.0005772207
## ... Similar to previous best
## Run 315 stress 0.07947736
## ... Procrustes: rmse 0.004529311 max resid 0.01086393
## Run 316 stress 0.07947637
## ... Procrustes: rmse 0.005540737 max resid 0.01340361
## Run 317 stress 0.1916272
## Run 318 stress 0.07947664
## ... Procrustes: rmse 0.006303197 max resid 0.01532053
## Run 319 stress 0.07947531
## ... Procrustes: rmse 0.0001447327 max resid 0.0003524904
## ... Similar to previous best
## Run 320 stress 0.07947635
## ... Procrustes: rmse 0.005569039 max resid 0.01347628
## Run 321 stress 0.07947658
## ... Procrustes: rmse 0.005209553 max resid 0.01257334
## Run 322 stress 0.07947533
## ... Procrustes: rmse 0.0001844728 max resid 0.0004499784
## ... Similar to previous best
## Run 323 stress 0.07947532
## ... Procrustes: rmse 0.0001567637 max resid 0.000382454
## ... Similar to previous best
## Run 324 stress 0.191627
## Run 325 stress 0.07947529
## ... Procrustes: rmse 8.481425e-05 max resid 0.0002061736
## ... Similar to previous best
## Run 326 stress 0.07947528
## ... Procrustes: rmse 1.052151e-05 max resid 2.527079e-05
## ... Similar to previous best
## Run 327 stress 0.07947528
## ... Procrustes: rmse 5.645118e-06 max resid 1.121539e-05
## ... Similar to previous best
## Run 328 stress 0.07947532
## ... Procrustes: rmse 0.0001713907 max resid 0.0004192548
## ... Similar to previous best
## Run 329 stress 0.07947666
## ... Procrustes: rmse 0.006316691 max resid 0.0153545
## Run 330 stress 0.07947642
## ... Procrustes: rmse 0.006080854 max resid 0.01476144
## Run 331 stress 0.07947537
## ... Procrustes: rmse 0.0002214837 max resid 0.0005406293
## ... Similar to previous best
## Run 332 stress 0.07947897
## ... Procrustes: rmse 0.002989514 max resid 0.007153959
## ... Similar to previous best
## Run 333 stress 0.07947633
## ... Procrustes: rmse 0.005892048 max resid 0.01428615
## Run 334 stress 0.07947636
## ... Procrustes: rmse 0.005980359 max resid 0.01450905
## Run 335 stress 0.07947649
## ... Procrustes: rmse 0.006167704 max resid 0.0149784
## Run 336 stress 0.07947532
## ... Procrustes: rmse 0.0001625835 max resid 0.0003959472
## ... Similar to previous best
## Run 337 stress 0.07947529
## ... Procrustes: rmse 0.0001006183 max resid 0.0002450899
## ... Similar to previous best
## Run 338 stress 0.1916272
## Run 339 stress 0.07947532
## ... Procrustes: rmse 0.000151552 max resid 0.000369433
## ... Similar to previous best
## Run 340 stress 0.07947633
## ... Procrustes: rmse 0.005635874 max resid 0.01364375
## Run 341 stress 0.07947649
## ... Procrustes: rmse 0.006167092 max resid 0.01497826
## Run 342 stress 0.07947643
## ... Procrustes: rmse 0.006082023 max resid 0.01476061
## Run 343 stress 0.07947529
## ... Procrustes: rmse 0.0001063822 max resid 0.0002593056
## ... Similar to previous best
## Run 344 stress 0.07947896
## ... Procrustes: rmse 0.002868575 max resid 0.006867173
## ... Similar to previous best
## Run 345 stress 0.07947655
## ... Procrustes: rmse 0.006223286 max resid 0.01511986
## Run 346 stress 0.0794753
## ... Procrustes: rmse 0.0001193411 max resid 0.0002904102
## ... Similar to previous best
## Run 347 stress 0.0794753
## ... Procrustes: rmse 0.0001103275 max resid 0.0002681188
## ... Similar to previous best
## Run 348 stress 0.07947644
## ... Procrustes: rmse 0.005427863 max resid 0.01312184
## Run 349 stress 0.07947634
## ... Procrustes: rmse 0.005920347 max resid 0.01435821
## Run 350 stress 0.0794766
## ... Procrustes: rmse 0.006270724 max resid 0.01523841
## Run 351 stress 0.07947528
## ... Procrustes: rmse 6.921754e-05 max resid 0.0001683311
## ... Similar to previous best
## Run 352 stress 0.07947533
## ... Procrustes: rmse 0.0001882182 max resid 0.000458441
## ... Similar to previous best
## Run 353 stress 0.07947529
## ... Procrustes: rmse 7.841605e-05 max resid 0.0001911405
## ... Similar to previous best
## Run 354 stress 0.07947633
## ... Procrustes: rmse 0.005655331 max resid 0.01369371
## Run 355 stress 0.07947644
## ... Procrustes: rmse 0.006115867 max resid 0.0148496
## Run 356 stress 0.07947652
## ... Procrustes: rmse 0.006204275 max resid 0.01507167
## Run 357 stress 0.07947635
## ... Procrustes: rmse 0.00595154 max resid 0.01443664
## Run 358 stress 0.1916271
## Run 359 stress 0.07947643
## ... Procrustes: rmse 0.006084363 max resid 0.01476836
## Run 360 stress 0.07947636
## ... Procrustes: rmse 0.005978208 max resid 0.01450168
## Run 361 stress 0.07947529
## ... Procrustes: rmse 9.447731e-05 max resid 0.0002308798
## ... Similar to previous best
## Run 362 stress 0.07947532
## ... Procrustes: rmse 0.0001593373 max resid 0.0003884622
## ... Similar to previous best
## Run 363 stress 0.07947645
## ... Procrustes: rmse 0.006129639 max resid 0.01488389
## Run 364 stress 0.07947654
## ... Procrustes: rmse 0.005255278 max resid 0.01268826
## Run 365 stress 0.07947723
## ... Procrustes: rmse 0.004628708 max resid 0.01111365
## Run 366 stress 0.07947553
## ... Procrustes: rmse 0.000449774 max resid 0.001091761
## ... Similar to previous best
## Run 367 stress 0.07947529
## ... Procrustes: rmse 0.0001003768 max resid 0.0002443221
## ... Similar to previous best
## Run 368 stress 0.3174254
## Run 369 stress 0.07947532
## ... Procrustes: rmse 0.0001731602 max resid 0.0004224528
## ... Similar to previous best
## Run 370 stress 0.07947645
## ... Procrustes: rmse 0.006069134 max resid 0.01472635
## Run 371 stress 0.07947767
## ... Procrustes: rmse 0.004301833 max resid 0.01029595
## Run 372 stress 0.07947529
## ... Procrustes: rmse 9.076271e-05 max resid 0.0002213528
## ... Similar to previous best
## Run 373 stress 0.07947665
## ... Procrustes: rmse 0.005161828 max resid 0.01245317
## Run 374 stress 0.07947528
## ... Procrustes: rmse 6.44591e-05 max resid 0.0001567085
## ... Similar to previous best
## Run 375 stress 0.07947622
## ... Procrustes: rmse 0.0009343534 max resid 0.002260829
## ... Similar to previous best
## Run 376 stress 0.07947531
## ... Procrustes: rmse 0.00015374 max resid 0.0003738698
## ... Similar to previous best
## Run 377 stress 0.07947647
## ... Procrustes: rmse 0.006112168 max resid 0.01484291
## Run 378 stress 0.07947529
## ... Procrustes: rmse 9.332414e-05 max resid 0.0002268842
## ... Similar to previous best
## Run 379 stress 0.07947637
## ... Procrustes: rmse 0.006000513 max resid 0.01455971
## Run 380 stress 0.07947534
## ... Procrustes: rmse 0.0001892605 max resid 0.0004621311
## ... Similar to previous best
## Run 381 stress 0.0794767
## ... Procrustes: rmse 0.005087308 max resid 0.01226697
## Run 382 stress 0.07947694
## ... Procrustes: rmse 0.004862965 max resid 0.01170234
## Run 383 stress 0.07947634
## ... Procrustes: rmse 0.005943661 max resid 0.01441698
## Run 384 stress 0.07947637
## ... Procrustes: rmse 0.005994707 max resid 0.01454548
## Run 385 stress 0.07947534
## ... Procrustes: rmse 0.0001986909 max resid 0.0004842343
## ... Similar to previous best
## Run 386 stress 0.1916274
## Run 387 stress 0.07947637
## ... Procrustes: rmse 0.005993302 max resid 0.01454168
## Run 388 stress 0.07947641
## ... Procrustes: rmse 0.005440383 max resid 0.01315272
## Run 389 stress 0.07947646
## ... Procrustes: rmse 0.006114143 max resid 0.01484572
## Run 390 stress 0.0794758
## ... Procrustes: rmse 0.0006665646 max resid 0.001615519
## ... Similar to previous best
## Run 391 stress 0.07947645
## ... Procrustes: rmse 0.006125801 max resid 0.01487445
## Run 392 stress 0.1916271
## Run 393 stress 0.07947685
## ... Procrustes: rmse 0.004956223 max resid 0.01193994
## Run 394 stress 0.07947637
## ... Procrustes: rmse 0.005976342 max resid 0.01450219
## Run 395 stress 0.07947636
## ... Procrustes: rmse 0.005985523 max resid 0.01452168
## Run 396 stress 0.07947528
## ... Procrustes: rmse 2.254746e-05 max resid 5.57011e-05
## ... Similar to previous best
## Run 397 stress 0.07947643
## ... Procrustes: rmse 0.006078991 max resid 0.0147528
## Run 398 stress 0.07947632
## ... Procrustes: rmse 0.005805278 max resid 0.01406798
## Run 399 stress 0.07947533
## ... Procrustes: rmse 0.0001686377 max resid 0.0004116278
## ... Similar to previous best
## Run 400 stress 0.0794753
## ... Procrustes: rmse 0.0001160923 max resid 0.0002817183
## ... Similar to previous best
## Run 401 stress 0.3174252
## Run 402 stress 0.07947534
## ... Procrustes: rmse 0.0001452365 max resid 0.0003433964
## ... Similar to previous best
## Run 403 stress 0.07947638
## ... Procrustes: rmse 0.005506685 max resid 0.01331954
## Run 404 stress 0.1966891
## Run 405 stress 0.07947587
## ... Procrustes: rmse 0.000715599 max resid 0.001732796
## ... Similar to previous best
## Run 406 stress 0.0794765
## ... Procrustes: rmse 0.006175306 max resid 0.01499932
## Run 407 stress 0.07947646
## ... Procrustes: rmse 0.006127523 max resid 0.01487944
## Run 408 stress 0.07947655
## ... Procrustes: rmse 0.006229993 max resid 0.01513639
## Run 409 stress 0.07947529
## ... Procrustes: rmse 4.76145e-05 max resid 0.000114395
## ... Similar to previous best
## Run 410 stress 0.07947529
## ... Procrustes: rmse 8.987271e-05 max resid 0.0002189778
## ... Similar to previous best
## Run 411 stress 0.07947535
## ... Procrustes: rmse 0.000199349 max resid 0.0004856314
## ... Similar to previous best
## Run 412 stress 0.07947666
## ... Procrustes: rmse 0.006317343 max resid 0.0153561
## Run 413 stress 0.07947649
## ... Procrustes: rmse 0.00532006 max resid 0.01285091
## Run 414 stress 0.07947535
## ... Procrustes: rmse 0.0002012741 max resid 0.0004906771
## ... Similar to previous best
## Run 415 stress 0.07947602
## ... Procrustes: rmse 0.0007810703 max resid 0.00189157
## ... Similar to previous best
## Run 416 stress 0.07947641
## ... Procrustes: rmse 0.00606215 max resid 0.01471486
## Run 417 stress 0.07947637
## ... Procrustes: rmse 0.006007811 max resid 0.01457769
## Run 418 stress 0.07947872
## ... Procrustes: rmse 0.002497971 max resid 0.005993225
## ... Similar to previous best
## Run 419 stress 0.07947531
## ... Procrustes: rmse 0.0001357327 max resid 0.0003304282
## ... Similar to previous best
## Run 420 stress 0.07947531
## ... Procrustes: rmse 0.0001465254 max resid 0.0003570995
## ... Similar to previous best
## Run 421 stress 0.07947632
## ... Procrustes: rmse 0.005861434 max resid 0.01421066
## Run 422 stress 0.07947638
## ... Procrustes: rmse 0.00602278 max resid 0.01461547
## Run 423 stress 0.07947637
## ... Procrustes: rmse 0.006010488 max resid 0.01458513
## Run 424 stress 0.07947528
## ... Procrustes: rmse 6.30667e-05 max resid 0.0001538113
## ... Similar to previous best
## Run 425 stress 0.07947655
## ... Procrustes: rmse 0.00622141 max resid 0.01511513
## Run 426 stress 0.07947645
## ... Procrustes: rmse 0.006121372 max resid 0.01486507
## Run 427 stress 0.07947639
## ... Procrustes: rmse 0.006043386 max resid 0.01466713
## Run 428 stress 0.07947529
## ... Procrustes: rmse 9.091095e-05 max resid 0.0002216853
## ... Similar to previous best
## Run 429 stress 0.07947528
## ... Procrustes: rmse 4.479672e-05 max resid 0.0001056501
## ... Similar to previous best
## Run 430 stress 0.07947678
## ... Procrustes: rmse 0.005032696 max resid 0.01212899
## Run 431 stress 0.07947535
## ... Procrustes: rmse 0.0002133069 max resid 0.0005203901
## ... Similar to previous best
## Run 432 stress 0.07947529
## ... Procrustes: rmse 5.389752e-05 max resid 0.0001261148
## ... Similar to previous best
## Run 433 stress 0.07947633
## ... Procrustes: rmse 0.005907486 max resid 0.01432491
## Run 434 stress 0.07947751
## ... Procrustes: rmse 0.004421134 max resid 0.01059331
## Run 435 stress 0.1966881
## Run 436 stress 0.0794754
## ... Procrustes: rmse 0.0002433332 max resid 0.0005893356
## ... Similar to previous best
## Run 437 stress 0.1916273
## Run 438 stress 0.07947529
## ... Procrustes: rmse 6.834002e-05 max resid 0.0001672265
## ... Similar to previous best
## Run 439 stress 0.07947531
## ... Procrustes: rmse 0.0001528907 max resid 0.0003740178
## ... Similar to previous best
## Run 440 stress 0.07947645
## ... Procrustes: rmse 0.00611526 max resid 0.01484904
## Run 441 stress 0.07947528
## ... Procrustes: rmse 4.894598e-05 max resid 0.0001194994
## ... Similar to previous best
## Run 442 stress 0.07947639
## ... Procrustes: rmse 0.00604439 max resid 0.01466993
## Run 443 stress 0.07947765
## ... Procrustes: rmse 0.004315241 max resid 0.01032976
## Run 444 stress 0.07947649
## ... Procrustes: rmse 0.005327367 max resid 0.01286942
## Run 445 stress 0.07947531
## ... Procrustes: rmse 0.0001443642 max resid 0.0003524559
## ... Similar to previous best
## Run 446 stress 0.0794753
## ... Procrustes: rmse 0.0001200165 max resid 0.0002926235
## ... Similar to previous best
## Run 447 stress 0.07947541
## ... Procrustes: rmse 0.0003089113 max resid 0.0007498903
## ... Similar to previous best
## Run 448 stress 0.2899131
## Run 449 stress 0.07947538
## ... Procrustes: rmse 0.0002228846 max resid 0.0005402105
## ... Similar to previous best
## Run 450 stress 0.07947639
## ... Procrustes: rmse 0.006030667 max resid 0.01463559
## Run 451 stress 0.0794765
## ... Procrustes: rmse 0.006172423 max resid 0.01499064
## Run 452 stress 0.07947538
## ... Procrustes: rmse 0.0002229119 max resid 0.0005423915
## ... Similar to previous best
## Run 453 stress 0.07947652
## ... Procrustes: rmse 0.006176303 max resid 0.01500277
## Run 454 stress 0.07947642
## ... Procrustes: rmse 0.006088924 max resid 0.01478194
## Run 455 stress 0.07947534
## ... Procrustes: rmse 0.0001856781 max resid 0.000448598
## ... Similar to previous best
## Run 456 stress 0.07947585
## ... Procrustes: rmse 0.0006770829 max resid 0.001638844
## ... Similar to previous best
## Run 457 stress 0.1916271
## Run 458 stress 0.07947537
## ... Procrustes: rmse 0.0002371314 max resid 0.0005774834
## ... Similar to previous best
## Run 459 stress 0.07947642
## ... Procrustes: rmse 0.00608526 max resid 0.01477269
## Run 460 stress 0.07947709
## ... Procrustes: rmse 0.004744368 max resid 0.01140353
## Run 461 stress 0.07947531
## ... Procrustes: rmse 0.0001409571 max resid 0.0003431639
## ... Similar to previous best
## Run 462 stress 0.07947539
## ... Procrustes: rmse 0.0002620834 max resid 0.0006381466
## ... Similar to previous best
## Run 463 stress 0.1966884
## Run 464 stress 0.07947651
## ... Procrustes: rmse 0.006187626 max resid 0.01502971
## Run 465 stress 0.07947744
## ... Procrustes: rmse 0.00447023 max resid 0.0107164
## Run 466 stress 0.07947532
## ... Procrustes: rmse 0.0001744396 max resid 0.0004256646
## ... Similar to previous best
## Run 467 stress 0.3171831
## Run 468 stress 0.07947638
## ... Procrustes: rmse 0.006019115 max resid 0.01460641
## Run 469 stress 0.0794753
## ... Procrustes: rmse 0.0001065562 max resid 0.0002592253
## ... Similar to previous best
## Run 470 stress 0.07947805
## ... Procrustes: rmse 0.004044137 max resid 0.009653186
## ... Similar to previous best
## Run 471 stress 0.07947643
## ... Procrustes: rmse 0.006098409 max resid 0.01480536
## Run 472 stress 0.07947529
## ... Procrustes: rmse 9.986583e-05 max resid 0.0002452629
## ... Similar to previous best
## Run 473 stress 0.07947528
## ... Procrustes: rmse 1.179269e-05 max resid 2.172586e-05
## ... Similar to previous best
## Run 474 stress 0.0794766
## ... Procrustes: rmse 0.006274346 max resid 0.01524807
## Run 475 stress 0.07947641
## ... Procrustes: rmse 0.006067936 max resid 0.01473047
## Run 476 stress 0.07947632
## ... Procrustes: rmse 0.00573402 max resid 0.01388867
## Run 477 stress 0.07947691
## ... Procrustes: rmse 0.004892471 max resid 0.01177691
## Run 478 stress 0.07947896
## ... Procrustes: rmse 0.003138449 max resid 0.00750506
## ... Similar to previous best
## Run 479 stress 0.07947531
## ... Procrustes: rmse 0.0001457117 max resid 0.0003559081
## ... Similar to previous best
## Run 480 stress 0.07947667
## ... Procrustes: rmse 0.006324549 max resid 0.01537443
## Run 481 stress 0.07947638
## ... Procrustes: rmse 0.006009108 max resid 0.0145795
## Run 482 stress 0.07947641
## ... Procrustes: rmse 0.006067786 max resid 0.01472906
## Run 483 stress 0.0794764
## ... Procrustes: rmse 0.006045249 max resid 0.0146721
## Run 484 stress 0.07947657
## ... Procrustes: rmse 0.006244711 max resid 0.01517322
## Run 485 stress 0.07947632
## ... Procrustes: rmse 0.005715599 max resid 0.01384363
## Run 486 stress 0.1916274
## Run 487 stress 0.07947533
## ... Procrustes: rmse 0.0001840384 max resid 0.0004465324
## ... Similar to previous best
## Run 488 stress 0.07947634
## ... Procrustes: rmse 0.005927946 max resid 0.01437669
## Run 489 stress 0.0794765
## ... Procrustes: rmse 0.006125235 max resid 0.01487432
## Run 490 stress 0.07947534
## ... Procrustes: rmse 0.0001975132 max resid 0.000480965
## ... Similar to previous best
## Run 491 stress 0.07947649
## ... Procrustes: rmse 0.00615654 max resid 0.01495103
## Run 492 stress 0.07947529
## ... Procrustes: rmse 9.063386e-05 max resid 0.000218799
## ... Similar to previous best
## Run 493 stress 0.07947531
## ... Procrustes: rmse 0.0001525531 max resid 0.0003720408
## ... Similar to previous best
## Run 494 stress 0.07947643
## ... Procrustes: rmse 0.006085534 max resid 0.01477265
## Run 495 stress 0.07947529
## ... Procrustes: rmse 7.270939e-05 max resid 0.0001766391
## ... Similar to previous best
## Run 496 stress 0.07947529
## ... Procrustes: rmse 9.373565e-05 max resid 0.0002282594
## ... Similar to previous best
## Run 497 stress 0.07947542
## ... Procrustes: rmse 0.0003222106 max resid 0.0007821788
## ... Similar to previous best
## Run 498 stress 0.07947647
## ... Procrustes: rmse 0.006149275 max resid 0.01493387
## Run 499 stress 0.07947529
## ... Procrustes: rmse 8.075678e-05 max resid 0.0001968383
## ... Similar to previous best
## Run 500 stress 0.1916275
## *** Best solution repeated 184 times# Stratified lakes and ocean sites
pdeso_NMDS <- metaMDS(pdeso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 9.841877e-05
## Run 1 stress 9.952278e-05
## ... Procrustes: rmse 0.0003100209 max resid 0.0004592501
## ... Similar to previous best
## Run 2 stress 9.883773e-05
## ... Procrustes: rmse 0.0004840984 max resid 0.001130581
## ... Similar to previous best
## Run 3 stress 9.658225e-05
## ... New best solution
## ... Procrustes: rmse 0.0003407781 max resid 0.0005545689
## ... Similar to previous best
## Run 4 stress 9.62451e-05
## ... New best solution
## ... Procrustes: rmse 0.0002386501 max resid 0.0006340264
## ... Similar to previous best
## Run 5 stress 9.506702e-05
## ... New best solution
## ... Procrustes: rmse 0.0001813902 max resid 0.0003185648
## ... Similar to previous best
## Run 6 stress 9.807832e-05
## ... Procrustes: rmse 1.001523e-05 max resid 2.109195e-05
## ... Similar to previous best
## Run 7 stress 9.98454e-05
## ... Procrustes: rmse 0.000127037 max resid 0.0002980753
## ... Similar to previous best
## Run 8 stress 9.227927e-05
## ... New best solution
## ... Procrustes: rmse 0.000134831 max resid 0.0002882817
## ... Similar to previous best
## Run 9 stress 9.896308e-05
## ... Procrustes: rmse 0.0003564186 max resid 0.0006782592
## ... Similar to previous best
## Run 10 stress 0.3275196
## Run 11 stress 9.499081e-05
## ... Procrustes: rmse 0.0001320705 max resid 0.0002847586
## ... Similar to previous best
## Run 12 stress 9.462627e-05
## ... Procrustes: rmse 0.0001886885 max resid 0.0004427109
## ... Similar to previous best
## Run 13 stress 9.363911e-05
## ... Procrustes: rmse 0.0002045539 max resid 0.0004525967
## ... Similar to previous best
## Run 14 stress 9.778537e-05
## ... Procrustes: rmse 0.0002169553 max resid 0.0003723202
## ... Similar to previous best
## Run 15 stress 9.819632e-05
## ... Procrustes: rmse 0.0003371087 max resid 0.0006125078
## ... Similar to previous best
## Run 16 stress 9.932515e-05
## ... Procrustes: rmse 0.0002879067 max resid 0.0005062405
## ... Similar to previous best
## Run 17 stress 9.882799e-05
## ... Procrustes: rmse 0.0001399301 max resid 0.0002947246
## ... Similar to previous best
## Run 18 stress 9.964121e-05
## ... Procrustes: rmse 0.0003298097 max resid 0.0006813054
## ... Similar to previous best
## Run 19 stress 9.738327e-05
## ... Procrustes: rmse 0.0003295529 max resid 0.0005860983
## ... Similar to previous best
## Run 20 stress 0.2693972
## Run 21 stress 9.609779e-05
## ... Procrustes: rmse 0.0001208226 max resid 0.0003305467
## ... Similar to previous best
## Run 22 stress 9.904169e-05
## ... Procrustes: rmse 0.0003395648 max resid 0.0006163953
## ... Similar to previous best
## Run 23 stress 9.67023e-05
## ... Procrustes: rmse 0.0001198794 max resid 0.0002846052
## ... Similar to previous best
## Run 24 stress 9.768804e-05
## ... Procrustes: rmse 0.0003353028 max resid 0.0006091379
## ... Similar to previous best
## Run 25 stress 9.428031e-05
## ... Procrustes: rmse 0.0001338181 max resid 0.0002876763
## ... Similar to previous best
## Run 26 stress 9.993375e-05
## ... Procrustes: rmse 0.0002552055 max resid 0.0004615783
## ... Similar to previous best
## Run 27 stress 9.98311e-05
## ... Procrustes: rmse 0.0002567683 max resid 0.0005013541
## ... Similar to previous best
## Run 28 stress 9.892056e-05
## ... Procrustes: rmse 0.0002874701 max resid 0.0004706755
## ... Similar to previous best
## Run 29 stress 9.423854e-05
## ... Procrustes: rmse 0.0001958548 max resid 0.0003966364
## ... Similar to previous best
## Run 30 stress 9.747487e-05
## ... Procrustes: rmse 0.0002840188 max resid 0.0004240471
## ... Similar to previous best
## Run 31 stress 9.859965e-05
## ... Procrustes: rmse 0.0003082754 max resid 0.0006562274
## ... Similar to previous best
## Run 32 stress 9.275789e-05
## ... Procrustes: rmse 0.0001943818 max resid 0.000306393
## ... Similar to previous best
## Run 33 stress 9.540856e-05
## ... Procrustes: rmse 0.0003004714 max resid 0.0006397999
## ... Similar to previous best
## Run 34 stress 9.88192e-05
## ... Procrustes: rmse 0.0001809935 max resid 0.0003391258
## ... Similar to previous best
## Run 35 stress 9.509373e-05
## ... Procrustes: rmse 0.000133926 max resid 0.0002880054
## ... Similar to previous best
## Run 36 stress 9.645388e-05
## ... Procrustes: rmse 0.0001971215 max resid 0.0004045435
## ... Similar to previous best
## Run 37 stress 9.502506e-05
## ... Procrustes: rmse 0.0001685068 max resid 0.0003805872
## ... Similar to previous best
## Run 38 stress 9.308348e-05
## ... Procrustes: rmse 0.0002918726 max resid 0.0006249771
## ... Similar to previous best
## Run 39 stress 7.393023e-05
## ... New best solution
## ... Procrustes: rmse 0.0001689793 max resid 0.0003787732
## ... Similar to previous best
## Run 40 stress 9.648534e-05
## ... Procrustes: rmse 0.0003298258 max resid 0.0005471845
## ... Similar to previous best
## Run 41 stress 9.727932e-05
## ... Procrustes: rmse 0.0001800687 max resid 0.0003154765
## ... Similar to previous best
## Run 42 stress 9.695273e-05
## ... Procrustes: rmse 0.0001782652 max resid 0.0003187433
## ... Similar to previous best
## Run 43 stress 9.867894e-05
## ... Procrustes: rmse 0.000346137 max resid 0.0006107768
## ... Similar to previous best
## Run 44 stress 9.493727e-05
## ... Procrustes: rmse 0.0001224528 max resid 0.0002982462
## ... Similar to previous best
## Run 45 stress 9.997134e-05
## ... Procrustes: rmse 0.0002508948 max resid 0.0004985898
## ... Similar to previous best
## Run 46 stress 9.732898e-05
## ... Procrustes: rmse 0.0003197431 max resid 0.0005928609
## ... Similar to previous best
## Run 47 stress 9.946821e-05
## ... Procrustes: rmse 0.0003383515 max resid 0.0005983349
## ... Similar to previous best
## Run 48 stress 9.767432e-05
## ... Procrustes: rmse 0.0002916955 max resid 0.0006083547
## ... Similar to previous best
## Run 49 stress 9.697486e-05
## ... Procrustes: rmse 0.0002227337 max resid 0.0004065158
## ... Similar to previous best
## Run 50 stress 9.350447e-05
## ... Procrustes: rmse 0.0002031477 max resid 0.0003451213
## ... Similar to previous best
## Run 51 stress 9.794023e-05
## ... Procrustes: rmse 0.0002454516 max resid 0.0004909589
## ... Similar to previous best
## Run 52 stress 9.856086e-05
## ... Procrustes: rmse 0.0001788565 max resid 0.0003927678
## ... Similar to previous best
## Run 53 stress 9.862603e-05
## ... Procrustes: rmse 0.000182094 max resid 0.0003155612
## ... Similar to previous best
## Run 54 stress 9.985794e-05
## ... Procrustes: rmse 0.0002969385 max resid 0.0004490526
## ... Similar to previous best
## Run 55 stress 0.2520003
## Run 56 stress 9.429355e-05
## ... Procrustes: rmse 0.0003274962 max resid 0.0006197181
## ... Similar to previous best
## Run 57 stress 9.684308e-05
## ... Procrustes: rmse 0.0003066299 max resid 0.0005942055
## ... Similar to previous best
## Run 58 stress 9.82393e-05
## ... Procrustes: rmse 0.000247974 max resid 0.0004943316
## ... Similar to previous best
## Run 59 stress 9.904462e-05
## ... Procrustes: rmse 0.0003139755 max resid 0.0006190313
## ... Similar to previous best
## Run 60 stress 9.818607e-05
## ... Procrustes: rmse 0.0003110811 max resid 0.0006067776
## ... Similar to previous best
## Run 61 stress 9.884847e-05
## ... Procrustes: rmse 0.0001740619 max resid 0.0003853338
## ... Similar to previous best
## Run 62 stress 9.710921e-05
## ... Procrustes: rmse 0.0002388431 max resid 0.0004836797
## ... Similar to previous best
## Run 63 stress 8.292996e-05
## ... Procrustes: rmse 0.0001492417 max resid 0.0003468076
## ... Similar to previous best
## Run 64 stress 9.863039e-05
## ... Procrustes: rmse 0.0003253188 max resid 0.0004942105
## ... Similar to previous best
## Run 65 stress 9.76319e-05
## ... Procrustes: rmse 0.0003069422 max resid 0.0006220446
## ... Similar to previous best
## Run 66 stress 9.651012e-05
## ... Procrustes: rmse 0.000190924 max resid 0.0003558999
## ... Similar to previous best
## Run 67 stress 9.882365e-05
## ... Procrustes: rmse 0.0003264289 max resid 0.0004942074
## ... Similar to previous best
## Run 68 stress 9.557032e-05
## ... Procrustes: rmse 0.0002191034 max resid 0.0003620392
## ... Similar to previous best
## Run 69 stress 7.913553e-05
## ... Procrustes: rmse 0.0001277024 max resid 0.0002990235
## ... Similar to previous best
## Run 70 stress 9.794229e-05
## ... Procrustes: rmse 0.0001891731 max resid 0.0003391618
## ... Similar to previous best
## Run 71 stress 9.750029e-05
## ... Procrustes: rmse 0.0002164811 max resid 0.0004012227
## ... Similar to previous best
## Run 72 stress 9.787938e-05
## ... Procrustes: rmse 0.0002962545 max resid 0.0006113439
## ... Similar to previous best
## Run 73 stress 9.899137e-05
## ... Procrustes: rmse 0.0002971139 max resid 0.000614067
## ... Similar to previous best
## Run 74 stress 8.976376e-05
## ... Procrustes: rmse 0.000170602 max resid 0.0003454537
## ... Similar to previous best
## Run 75 stress 8.627087e-05
## ... Procrustes: rmse 0.0001591522 max resid 0.0002880488
## ... Similar to previous best
## Run 76 stress 9.481555e-05
## ... Procrustes: rmse 0.0002195314 max resid 0.0003632253
## ... Similar to previous best
## Run 77 stress 9.153604e-05
## ... Procrustes: rmse 0.000303777 max resid 0.0005899523
## ... Similar to previous best
## Run 78 stress 9.91274e-05
## ... Procrustes: rmse 0.0002493661 max resid 0.000442075
## ... Similar to previous best
## Run 79 stress 9.99829e-05
## ... Procrustes: rmse 0.0002337748 max resid 0.0003825657
## ... Similar to previous best
## Run 80 stress 9.949214e-05
## ... Procrustes: rmse 0.0001802374 max resid 0.0003564473
## ... Similar to previous best
## Run 81 stress 9.707194e-05
## ... Procrustes: rmse 0.0001961933 max resid 0.0002923167
## ... Similar to previous best
## Run 82 stress 9.861979e-05
## ... Procrustes: rmse 0.0003031586 max resid 0.0006242726
## ... Similar to previous best
## Run 83 stress 7.741513e-05
## ... Procrustes: rmse 9.056005e-05 max resid 0.0002162475
## ... Similar to previous best
## Run 84 stress 9.767919e-05
## ... Procrustes: rmse 0.0002559906 max resid 0.0004888481
## ... Similar to previous best
## Run 85 stress 9.670556e-05
## ... Procrustes: rmse 0.0002161346 max resid 0.0003599981
## ... Similar to previous best
## Run 86 stress 8.965377e-05
## ... Procrustes: rmse 0.0002121683 max resid 0.0003350655
## ... Similar to previous best
## Run 87 stress 9.927443e-05
## ... Procrustes: rmse 0.0003273878 max resid 0.0005001326
## ... Similar to previous best
## Run 88 stress 9.90688e-05
## ... Procrustes: rmse 0.0003217002 max resid 0.0006428284
## ... Similar to previous best
## Run 89 stress 9.442997e-05
## ... Procrustes: rmse 0.0001605508 max resid 0.0003647688
## ... Similar to previous best
## Run 90 stress 9.690094e-05
## ... Procrustes: rmse 0.0003295161 max resid 0.0006057214
## ... Similar to previous best
## Run 91 stress 9.858384e-05
## ... Procrustes: rmse 0.0001822997 max resid 0.0003184947
## ... Similar to previous best
## Run 92 stress 9.945798e-05
## ... Procrustes: rmse 0.0001981148 max resid 0.0003385742
## ... Similar to previous best
## Run 93 stress 9.366036e-05
## ... Procrustes: rmse 0.0001800555 max resid 0.0003398224
## ... Similar to previous best
## Run 94 stress 9.820416e-05
## ... Procrustes: rmse 0.0002366902 max resid 0.000357433
## ... Similar to previous best
## Run 95 stress 9.797941e-05
## ... Procrustes: rmse 0.0003238004 max resid 0.0004916469
## ... Similar to previous best
## Run 96 stress 9.783986e-05
## ... Procrustes: rmse 0.0001808814 max resid 0.0003178332
## ... Similar to previous best
## Run 97 stress 9.672335e-05
## ... Procrustes: rmse 0.0001783147 max resid 0.0003201679
## ... Similar to previous best
## Run 98 stress 8.619542e-05
## ... Procrustes: rmse 0.0001588134 max resid 0.0002868908
## ... Similar to previous best
## Run 99 stress 9.857266e-05
## ... Procrustes: rmse 0.0002491994 max resid 0.0004960985
## ... Similar to previous best
## Run 100 stress 9.285954e-05
## ... Procrustes: rmse 0.0001784808 max resid 0.0003372155
## ... Similar to previous best
## Run 101 stress 0.2693981
## Run 102 stress 9.918599e-05
## ... Procrustes: rmse 0.0003173623 max resid 0.0006181359
## ... Similar to previous best
## Run 103 stress 9.687981e-05
## ... Procrustes: rmse 0.0003287873 max resid 0.0006060029
## ... Similar to previous best
## Run 104 stress 9.631085e-05
## ... Procrustes: rmse 0.0003296769 max resid 0.0006118868
## ... Similar to previous best
## Run 105 stress 9.662143e-05
## ... Procrustes: rmse 0.0001360707 max resid 0.0002354444
## ... Similar to previous best
## Run 106 stress 9.238155e-05
## ... Procrustes: rmse 0.0001841852 max resid 0.0004336456
## ... Similar to previous best
## Run 107 stress 9.892129e-05
## ... Procrustes: rmse 0.0002355883 max resid 0.0003552934
## ... Similar to previous best
## Run 108 stress 9.96877e-05
## ... Procrustes: rmse 0.0003427467 max resid 0.0006434789
## ... Similar to previous best
## Run 109 stress 0.2694895
## Run 110 stress 9.82631e-05
## ... Procrustes: rmse 0.000283649 max resid 0.0006010232
## ... Similar to previous best
## Run 111 stress 9.857581e-05
## ... Procrustes: rmse 0.0002791953 max resid 0.0005004598
## ... Similar to previous best
## Run 112 stress 8.90138e-05
## ... Procrustes: rmse 0.0001567653 max resid 0.0002826582
## ... Similar to previous best
## Run 113 stress 9.888441e-05
## ... Procrustes: rmse 0.0001924534 max resid 0.0003457151
## ... Similar to previous best
## Run 114 stress 9.773596e-05
## ... Procrustes: rmse 0.0002480907 max resid 0.0004414285
## ... Similar to previous best
## Run 115 stress 9.783022e-05
## ... Procrustes: rmse 0.0001425594 max resid 0.0002372759
## ... Similar to previous best
## Run 116 stress 9.656761e-05
## ... Procrustes: rmse 0.000225684 max resid 0.0004072014
## ... Similar to previous best
## Run 117 stress 0.3192024
## Run 118 stress 9.923712e-05
## ... Procrustes: rmse 0.0002809638 max resid 0.0004882085
## ... Similar to previous best
## Run 119 stress 9.907121e-05
## ... Procrustes: rmse 0.000304171 max resid 0.0005998444
## ... Similar to previous best
## Run 120 stress 8.611182e-05
## ... Procrustes: rmse 0.0001629218 max resid 0.0004009404
## ... Similar to previous best
## Run 121 stress 9.789276e-05
## ... Procrustes: rmse 0.0002758565 max resid 0.000468953
## ... Similar to previous best
## Run 122 stress 9.881198e-05
## ... Procrustes: rmse 0.0001972833 max resid 0.0002926123
## ... Similar to previous best
## Run 123 stress 9.727474e-05
## ... Procrustes: rmse 0.0001915851 max resid 0.0003306425
## ... Similar to previous best
## Run 124 stress 9.874357e-05
## ... Procrustes: rmse 0.0002936661 max resid 0.0006084069
## ... Similar to previous best
## Run 125 stress 9.823174e-05
## ... Procrustes: rmse 0.0002447127 max resid 0.0004379599
## ... Similar to previous best
## Run 126 stress 9.87865e-05
## ... Procrustes: rmse 0.0003181945 max resid 0.0004809266
## ... Similar to previous best
## Run 127 stress 9.871719e-05
## ... Procrustes: rmse 0.0001301978 max resid 0.0003483054
## ... Similar to previous best
## Run 128 stress 9.407203e-05
## ... Procrustes: rmse 0.000226537 max resid 0.0003474162
## ... Similar to previous best
## Run 129 stress 9.784841e-05
## ... Procrustes: rmse 0.0002477212 max resid 0.0004402969
## ... Similar to previous best
## Run 130 stress 9.864093e-05
## ... Procrustes: rmse 0.0001816434 max resid 0.0003105469
## ... Similar to previous best
## Run 131 stress 9.905026e-05
## ... Procrustes: rmse 0.0003408648 max resid 0.0006484338
## ... Similar to previous best
## Run 132 stress 9.279755e-05
## ... Procrustes: rmse 0.000203847 max resid 0.0003113093
## ... Similar to previous best
## Run 133 stress 8.353456e-05
## ... Procrustes: rmse 0.0001970253 max resid 0.0003347273
## ... Similar to previous best
## Run 134 stress 9.309457e-05
## ... Procrustes: rmse 0.0001477208 max resid 0.000310306
## ... Similar to previous best
## Run 135 stress 9.851283e-05
## ... Procrustes: rmse 0.0003151274 max resid 0.0006175841
## ... Similar to previous best
## Run 136 stress 0.2447068
## Run 137 stress 9.956164e-05
## ... Procrustes: rmse 0.0003138458 max resid 0.0005611093
## ... Similar to previous best
## Run 138 stress 9.930764e-05
## ... Procrustes: rmse 0.000300779 max resid 0.0006186016
## ... Similar to previous best
## Run 139 stress 9.669727e-05
## ... Procrustes: rmse 0.0001789575 max resid 0.0003144849
## ... Similar to previous best
## Run 140 stress 9.47972e-05
## ... Procrustes: rmse 0.0002196698 max resid 0.0003631486
## ... Similar to previous best
## Run 141 stress 9.724061e-05
## ... Procrustes: rmse 0.0002149965 max resid 0.0003568391
## ... Similar to previous best
## Run 142 stress 9.987191e-05
## ... Procrustes: rmse 0.0002530175 max resid 0.0005006451
## ... Similar to previous best
## Run 143 stress 9.441864e-05
## ... Procrustes: rmse 0.0001229197 max resid 0.0003001835
## ... Similar to previous best
## Run 144 stress 9.748949e-05
## ... Procrustes: rmse 0.00028978 max resid 0.0006029811
## ... Similar to previous best
## Run 145 stress 9.916644e-05
## ... Procrustes: rmse 0.0003195371 max resid 0.0006496381
## ... Similar to previous best
## Run 146 stress 9.434759e-05
## ... Procrustes: rmse 0.0001718349 max resid 0.0003827401
## ... Similar to previous best
## Run 147 stress 9.897118e-05
## ... Procrustes: rmse 0.0003290758 max resid 0.0005022929
## ... Similar to previous best
## Run 148 stress 9.838305e-05
## ... Procrustes: rmse 0.0003406524 max resid 0.0006389992
## ... Similar to previous best
## Run 149 stress 9.600321e-05
## ... Procrustes: rmse 0.000237457 max resid 0.0004807694
## ... Similar to previous best
## Run 150 stress 9.880447e-05
## ... Procrustes: rmse 0.0001912825 max resid 0.0003662146
## ... Similar to previous best
## Run 151 stress 9.97739e-05
## ... Procrustes: rmse 0.0003422753 max resid 0.0005666857
## ... Similar to previous best
## Run 152 stress 9.498572e-05
## ... Procrustes: rmse 0.0001690632 max resid 0.0003099
## ... Similar to previous best
## Run 153 stress 9.227027e-05
## ... Procrustes: rmse 0.0003037544 max resid 0.0004600242
## ... Similar to previous best
## Run 154 stress 8.963464e-05
## ... Procrustes: rmse 0.0001707944 max resid 0.0003110015
## ... Similar to previous best
## Run 155 stress 9.92336e-05
## ... Procrustes: rmse 0.0003291139 max resid 0.0005001941
## ... Similar to previous best
## Run 156 stress 9.572366e-05
## ... Procrustes: rmse 0.0002296688 max resid 0.0003477788
## ... Similar to previous best
## Run 157 stress 0.2520002
## Run 158 stress 9.977476e-05
## ... Procrustes: rmse 0.0003408663 max resid 0.0005623714
## ... Similar to previous best
## Run 159 stress 8.828007e-05
## ... Procrustes: rmse 0.0002117514 max resid 0.0004465379
## ... Similar to previous best
## Run 160 stress 9.833225e-05
## ... Procrustes: rmse 0.0001815025 max resid 0.0003190122
## ... Similar to previous best
## Run 161 stress 9.758197e-05
## ... Procrustes: rmse 0.0001791529 max resid 0.0003133705
## ... Similar to previous best
## Run 162 stress 9.684435e-05
## ... Procrustes: rmse 0.0001410587 max resid 0.0002337492
## ... Similar to previous best
## Run 163 stress 9.381482e-05
## ... Procrustes: rmse 0.0002361097 max resid 0.0004795088
## ... Similar to previous best
## Run 164 stress 8.810325e-05
## ... Procrustes: rmse 0.0002464521 max resid 0.0005070525
## ... Similar to previous best
## Run 165 stress 9.857976e-05
## ... Procrustes: rmse 0.0003433429 max resid 0.0006042464
## ... Similar to previous best
## Run 166 stress 9.960072e-05
## ... Procrustes: rmse 0.0003399555 max resid 0.0005592443
## ... Similar to previous best
## Run 167 stress 9.974914e-05
## ... Procrustes: rmse 0.0003324023 max resid 0.0006732624
## ... Similar to previous best
## Run 168 stress 9.113287e-05
## ... Procrustes: rmse 0.0001680049 max resid 0.0002998828
## ... Similar to previous best
## Run 169 stress 9.320622e-05
## ... Procrustes: rmse 0.0001788985 max resid 0.0003234977
## ... Similar to previous best
## Run 170 stress 0.2581126
## Run 171 stress 9.543219e-05
## ... Procrustes: rmse 0.0002268081 max resid 0.0004692973
## ... Similar to previous best
## Run 172 stress 9.695158e-05
## ... Procrustes: rmse 0.000207436 max resid 0.000400043
## ... Similar to previous best
## Run 173 stress 9.492874e-05
## ... Procrustes: rmse 0.0002843659 max resid 0.0005912166
## ... Similar to previous best
## Run 174 stress 9.528204e-05
## ... Procrustes: rmse 0.0002397142 max resid 0.0004840484
## ... Similar to previous best
## Run 175 stress 9.764875e-05
## ... Procrustes: rmse 0.000290931 max resid 0.0006115474
## ... Similar to previous best
## Run 176 stress 9.726462e-05
## ... Procrustes: rmse 0.0001882783 max resid 0.00033721
## ... Similar to previous best
## Run 177 stress 9.718826e-05
## ... Procrustes: rmse 0.0001795089 max resid 0.000314753
## ... Similar to previous best
## Run 178 stress 9.970094e-05
## ... Procrustes: rmse 0.0001792274 max resid 0.0003223714
## ... Similar to previous best
## Run 179 stress 0.2520002
## Run 180 stress 8.552464e-05
## ... Procrustes: rmse 0.000172397 max resid 0.0002869987
## ... Similar to previous best
## Run 181 stress 9.900868e-05
## ... Procrustes: rmse 0.0002948914 max resid 0.0006050924
## ... Similar to previous best
## Run 182 stress 9.855021e-05
## ... Procrustes: rmse 0.0001818306 max resid 0.0003002358
## ... Similar to previous best
## Run 183 stress 9.871139e-05
## ... Procrustes: rmse 0.0001903367 max resid 0.0003541002
## ... Similar to previous best
## Run 184 stress 9.747343e-05
## ... Procrustes: rmse 0.0003099819 max resid 0.0006055316
## ... Similar to previous best
## Run 185 stress 9.928102e-05
## ... Procrustes: rmse 0.0003405422 max resid 0.0005980702
## ... Similar to previous best
## Run 186 stress 9.734727e-05
## ... Procrustes: rmse 0.0001538345 max resid 0.0003218977
## ... Similar to previous best
## Run 187 stress 9.904583e-05
## ... Procrustes: rmse 0.0001911763 max resid 0.0003422779
## ... Similar to previous best
## Run 188 stress 9.972277e-05
## ... Procrustes: rmse 0.0003277142 max resid 0.0005939831
## ... Similar to previous best
## Run 189 stress 9.596403e-05
## ... Procrustes: rmse 0.0001759196 max resid 0.0003105817
## ... Similar to previous best
## Run 190 stress 9.472086e-05
## ... Procrustes: rmse 0.0002694141 max resid 0.0004654728
## ... Similar to previous best
## Run 191 stress 9.782344e-05
## ... Procrustes: rmse 0.0002439833 max resid 0.0004356586
## ... Similar to previous best
## Run 192 stress 0.2624778
## Run 193 stress 9.774888e-05
## ... Procrustes: rmse 0.0002883435 max resid 0.0005858208
## ... Similar to previous best
## Run 194 stress 9.946425e-05
## ... Procrustes: rmse 0.0003188811 max resid 0.0006573119
## ... Similar to previous best
## Run 195 stress 9.99658e-05
## ... Procrustes: rmse 0.0003249518 max resid 0.0006500414
## ... Similar to previous best
## Run 196 stress 9.749439e-05
## ... Procrustes: rmse 0.000226764 max resid 0.0003728747
## ... Similar to previous best
## Run 197 stress 9.145414e-05
## ... Procrustes: rmse 0.0001661189 max resid 0.0002875102
## ... Similar to previous best
## Run 198 stress 9.783598e-05
## ... Procrustes: rmse 0.000341185 max resid 0.0006009701
## ... Similar to previous best
## Run 199 stress 9.96031e-05
## ... Procrustes: rmse 0.0002516784 max resid 0.0004988581
## ... Similar to previous best
## Run 200 stress 9.196296e-05
## ... Procrustes: rmse 0.0002267776 max resid 0.0004683383
## ... Similar to previous best
## Run 201 stress 9.845751e-05
## ... Procrustes: rmse 0.0001909266 max resid 0.0003410286
## ... Similar to previous best
## Run 202 stress 9.098764e-05
## ... Procrustes: rmse 2.787832e-05 max resid 4.070849e-05
## ... Similar to previous best
## Run 203 stress 9.690656e-05
## ... Procrustes: rmse 0.0002312204 max resid 0.0003489157
## ... Similar to previous best
## Run 204 stress 9.497038e-05
## ... Procrustes: rmse 0.0003130914 max resid 0.0004825173
## ... Similar to previous best
## Run 205 stress 9.883784e-05
## ... Procrustes: rmse 0.0003281647 max resid 0.0004992412
## ... Similar to previous best
## Run 206 stress 9.226279e-05
## ... Procrustes: rmse 0.0001170006 max resid 0.0002870895
## ... Similar to previous best
## Run 207 stress 9.943316e-05
## ... Procrustes: rmse 0.0001922814 max resid 0.0003583559
## ... Similar to previous best
## Run 208 stress 9.934719e-05
## ... Procrustes: rmse 0.0001973045 max resid 0.0002954176
## ... Similar to previous best
## Run 209 stress 8.775518e-05
## ... Procrustes: rmse 4.194735e-05 max resid 8.272518e-05
## ... Similar to previous best
## Run 210 stress 9.513778e-05
## ... Procrustes: rmse 0.0003066925 max resid 0.0005486508
## ... Similar to previous best
## Run 211 stress 9.955612e-05
## ... Procrustes: rmse 0.000258086 max resid 0.0005011564
## ... Similar to previous best
## Run 212 stress 9.864565e-05
## ... Procrustes: rmse 0.0003424181 max resid 0.0006375009
## ... Similar to previous best
## Run 213 stress 9.881786e-05
## ... Procrustes: rmse 0.0001792941 max resid 0.0003223376
## ... Similar to previous best
## Run 214 stress 0.3407342
## Run 215 stress 9.868297e-05
## ... Procrustes: rmse 0.0003408065 max resid 0.0006455894
## ... Similar to previous best
## Run 216 stress 9.298857e-05
## ... Procrustes: rmse 0.0001453632 max resid 0.0002961653
## ... Similar to previous best
## Run 217 stress 9.677986e-05
## ... Procrustes: rmse 0.0002912431 max resid 0.0006012676
## ... Similar to previous best
## Run 218 stress 9.575311e-05
## ... Procrustes: rmse 0.0001531189 max resid 0.0003402039
## ... Similar to previous best
## Run 219 stress 9.873373e-05
## ... Procrustes: rmse 0.0001783569 max resid 0.0003919165
## ... Similar to previous best
## Run 220 stress 9.719179e-05
## ... Procrustes: rmse 0.000126513 max resid 0.0003014609
## ... Similar to previous best
## Run 221 stress 9.966536e-05
## ... Procrustes: rmse 0.0002387412 max resid 0.0004852761
## ... Similar to previous best
## Run 222 stress 9.922739e-05
## ... Procrustes: rmse 0.0002618535 max resid 0.0004084569
## ... Similar to previous best
## Run 223 stress 9.714825e-05
## ... Procrustes: rmse 0.0001830148 max resid 0.0003499651
## ... Similar to previous best
## Run 224 stress 9.680395e-05
## ... Procrustes: rmse 0.0003299878 max resid 0.0006073969
## ... Similar to previous best
## Run 225 stress 9.855834e-05
## ... Procrustes: rmse 0.0003374289 max resid 0.0005567205
## ... Similar to previous best
## Run 226 stress 9.910716e-05
## ... Procrustes: rmse 0.0001450853 max resid 0.000241474
## ... Similar to previous best
## Run 227 stress 9.819002e-05
## ... Procrustes: rmse 0.0003174102 max resid 0.0006342245
## ... Similar to previous best
## Run 228 stress 9.838315e-05
## ... Procrustes: rmse 0.0001650565 max resid 0.0003220254
## ... Similar to previous best
## Run 229 stress 0.2454662
## Run 230 stress 9.41286e-05
## ... Procrustes: rmse 0.0001829394 max resid 0.0003169666
## ... Similar to previous best
## Run 231 stress 9.940703e-05
## ... Procrustes: rmse 0.0001457453 max resid 0.0002395431
## ... Similar to previous best
## Run 232 stress 9.619118e-05
## ... Procrustes: rmse 0.0002352084 max resid 0.000425717
## ... Similar to previous best
## Run 233 stress 9.777678e-05
## ... Procrustes: rmse 0.0003215632 max resid 0.0004868729
## ... Similar to previous best
## Run 234 stress 8.970844e-05
## ... Procrustes: rmse 0.0001147608 max resid 0.000213847
## ... Similar to previous best
## Run 235 stress 9.917077e-05
## ... Procrustes: rmse 0.0003235447 max resid 0.00064789
## ... Similar to previous best
## Run 236 stress 0.3407342
## Run 237 stress 9.774062e-05
## ... Procrustes: rmse 0.0002487041 max resid 0.0004416454
## ... Similar to previous best
## Run 238 stress 9.829776e-05
## ... Procrustes: rmse 0.000276921 max resid 0.0004583146
## ... Similar to previous best
## Run 239 stress 9.709257e-05
## ... Procrustes: rmse 0.0003092443 max resid 0.0006031464
## ... Similar to previous best
## Run 240 stress 9.834554e-05
## ... Procrustes: rmse 0.0003086158 max resid 0.0006081793
## ... Similar to previous best
## Run 241 stress 9.902295e-05
## ... Procrustes: rmse 0.0001874431 max resid 0.0003345411
## ... Similar to previous best
## Run 242 stress 9.713925e-05
## ... Procrustes: rmse 0.0001306581 max resid 0.0003517624
## ... Similar to previous best
## Run 243 stress 9.634508e-05
## ... Procrustes: rmse 0.0002439569 max resid 0.0004363345
## ... Similar to previous best
## Run 244 stress 9.395006e-05
## ... Procrustes: rmse 0.0001739128 max resid 0.0003084155
## ... Similar to previous best
## Run 245 stress 9.616801e-05
## ... Procrustes: rmse 0.0001768868 max resid 0.0003112725
## ... Similar to previous best
## Run 246 stress 9.281969e-05
## ... Procrustes: rmse 0.0002196087 max resid 0.0003369857
## ... Similar to previous best
## Run 247 stress 0.2681919
## Run 248 stress 9.971437e-05
## ... Procrustes: rmse 0.0003407902 max resid 0.0005625606
## ... Similar to previous best
## Run 249 stress 9.984687e-05
## ... Procrustes: rmse 0.0001854627 max resid 0.000322684
## ... Similar to previous best
## Run 250 stress 9.165661e-05
## ... Procrustes: rmse 0.0001291457 max resid 0.000227062
## ... Similar to previous best
## Run 251 stress 9.886795e-05
## ... Procrustes: rmse 0.0002248529 max resid 0.0003708543
## ... Similar to previous best
## Run 252 stress 0.3407339
## Run 253 stress 9.770842e-05
## ... Procrustes: rmse 0.0002523167 max resid 0.0003961022
## ... Similar to previous best
## Run 254 stress 9.766432e-05
## ... Procrustes: rmse 0.0002273025 max resid 0.0003729054
## ... Similar to previous best
## Run 255 stress 9.794697e-05
## ... Procrustes: rmse 0.000188666 max resid 0.0003529788
## ... Similar to previous best
## Run 256 stress 8.809977e-05
## ... Procrustes: rmse 0.0001442017 max resid 0.0003253516
## ... Similar to previous best
## Run 257 stress 9.931087e-05
## ... Procrustes: rmse 0.0002501744 max resid 0.0004976852
## ... Similar to previous best
## Run 258 stress 9.957228e-05
## ... Procrustes: rmse 0.0001772778 max resid 0.0003900401
## ... Similar to previous best
## Run 259 stress 9.797658e-05
## ... Procrustes: rmse 0.0003401047 max resid 0.000635057
## ... Similar to previous best
## Run 260 stress 9.523332e-05
## ... Procrustes: rmse 0.0003232053 max resid 0.0005372967
## ... Similar to previous best
## Run 261 stress 9.558371e-05
## ... Procrustes: rmse 0.0001379294 max resid 0.0002324978
## ... Similar to previous best
## Run 262 stress 9.612755e-05
## ... Procrustes: rmse 0.0002851752 max resid 0.0005807863
## ... Similar to previous best
## Run 263 stress 9.680452e-05
## ... Procrustes: rmse 0.0001759211 max resid 0.0003029536
## ... Similar to previous best
## Run 264 stress 7.040399e-05
## ... New best solution
## ... Procrustes: rmse 1.362379e-05 max resid 2.367606e-05
## ... Similar to previous best
## Run 265 stress 9.209469e-05
## ... Procrustes: rmse 0.0002956033 max resid 0.0005505583
## ... Similar to previous best
## Run 266 stress 9.67059e-05
## ... Procrustes: rmse 0.0002501128 max resid 0.0004329506
## ... Similar to previous best
## Run 267 stress 9.806223e-05
## ... Procrustes: rmse 0.0003270651 max resid 0.0004963397
## ... Similar to previous best
## Run 268 stress 9.232938e-05
## ... Procrustes: rmse 0.0001684342 max resid 0.0003002381
## ... Similar to previous best
## Run 269 stress 9.830269e-05
## ... Procrustes: rmse 0.0001801186 max resid 0.0003165509
## ... Similar to previous best
## Run 270 stress 9.760899e-05
## ... Procrustes: rmse 0.000185203 max resid 0.0003363695
## ... Similar to previous best
## Run 271 stress 9.549527e-05
## ... Procrustes: rmse 0.0002839699 max resid 0.000601504
## ... Similar to previous best
## Run 272 stress 9.681634e-05
## ... Procrustes: rmse 0.0001766851 max resid 0.0003143237
## ... Similar to previous best
## Run 273 stress 9.833394e-05
## ... Procrustes: rmse 0.0001802509 max resid 0.0003177574
## ... Similar to previous best
## Run 274 stress 9.810589e-05
## ... Procrustes: rmse 0.0003343118 max resid 0.0005518175
## ... Similar to previous best
## Run 275 stress 9.928935e-05
## ... Procrustes: rmse 0.0003355167 max resid 0.0005115495
## ... Similar to previous best
## Run 276 stress 9.866648e-05
## ... Procrustes: rmse 0.0002950449 max resid 0.0006049577
## ... Similar to previous best
## Run 277 stress 9.71259e-05
## ... Procrustes: rmse 0.0002480728 max resid 0.0004884033
## ... Similar to previous best
## Run 278 stress 9.520372e-05
## ... Procrustes: rmse 0.0001886949 max resid 0.00029166
## ... Similar to previous best
## Run 279 stress 9.923785e-05
## ... Procrustes: rmse 0.0003414771 max resid 0.0006322354
## ... Similar to previous best
## Run 280 stress 9.785658e-05
## ... Procrustes: rmse 0.0001950612 max resid 0.0003325418
## ... Similar to previous best
## Run 281 stress 9.75352e-05
## ... Procrustes: rmse 0.0002482807 max resid 0.0004897796
## ... Similar to previous best
## Run 282 stress 9.908067e-05
## ... Procrustes: rmse 0.0003196501 max resid 0.0006405062
## ... Similar to previous best
## Run 283 stress 9.811513e-05
## ... Procrustes: rmse 0.0002308298 max resid 0.0004153807
## ... Similar to previous best
## Run 284 stress 9.611187e-05
## ... Procrustes: rmse 0.0001543682 max resid 0.0003302341
## ... Similar to previous best
## Run 285 stress 9.900123e-05
## ... Procrustes: rmse 0.0001251055 max resid 0.0002973169
## ... Similar to previous best
## Run 286 stress 9.912449e-05
## ... Procrustes: rmse 0.0002969786 max resid 0.0006075496
## ... Similar to previous best
## Run 287 stress 9.909407e-05
## ... Procrustes: rmse 0.0002515682 max resid 0.0004913206
## ... Similar to previous best
## Run 288 stress 9.902482e-05
## ... Procrustes: rmse 0.0003416644 max resid 0.0006362365
## ... Similar to previous best
## Run 289 stress 9.776024e-05
## ... Procrustes: rmse 0.0003182947 max resid 0.0006438087
## ... Similar to previous best
## Run 290 stress 9.498607e-05
## ... Procrustes: rmse 0.000280928 max resid 0.0005823334
## ... Similar to previous best
## Run 291 stress 9.838809e-05
## ... Procrustes: rmse 0.0002202825 max resid 0.0003980795
## ... Similar to previous best
## Run 292 stress 9.992565e-05
## ... Procrustes: rmse 0.0002694954 max resid 0.0004130538
## ... Similar to previous best
## Run 293 stress 9.530931e-05
## ... Procrustes: rmse 0.0001215244 max resid 0.0002934332
## ... Similar to previous best
## Run 294 stress 9.837354e-05
## ... Procrustes: rmse 0.0003430014 max resid 0.000603094
## ... Similar to previous best
## Run 295 stress 9.914116e-05
## ... Procrustes: rmse 0.0001280298 max resid 0.0003084689
## ... Similar to previous best
## Run 296 stress 9.69167e-05
## ... Procrustes: rmse 7.07671e-05 max resid 0.0001124556
## ... Similar to previous best
## Run 297 stress 9.444154e-05
## ... Procrustes: rmse 0.0001197948 max resid 0.000295692
## ... Similar to previous best
## Run 298 stress 9.921749e-05
## ... Procrustes: rmse 0.0003304396 max resid 0.0005026145
## ... Similar to previous best
## Run 299 stress 9.136575e-05
## ... Procrustes: rmse 0.0001952344 max resid 0.0003829882
## ... Similar to previous best
## Run 300 stress 9.861913e-05
## ... Procrustes: rmse 0.0002021684 max resid 0.0003372727
## ... Similar to previous best
## Run 301 stress 9.849586e-05
## ... Procrustes: rmse 0.0003097961 max resid 0.0005989233
## ... Similar to previous best
## Run 302 stress 9.236507e-05
## ... Procrustes: rmse 0.000311656 max resid 0.0006341206
## ... Similar to previous best
## Run 303 stress 0.3407333
## Run 304 stress 9.887468e-05
## ... Procrustes: rmse 0.0002346671 max resid 0.0003778569
## ... Similar to previous best
## Run 305 stress 9.925757e-05
## ... Procrustes: rmse 0.0003390372 max resid 0.0005607063
## ... Similar to previous best
## Run 306 stress 9.798706e-05
## ... Procrustes: rmse 0.0001959559 max resid 0.0002894044
## ... Similar to previous best
## Run 307 stress 9.850079e-05
## ... Procrustes: rmse 0.0003398058 max resid 0.0006318384
## ... Similar to previous best
## Run 308 stress 9.874719e-05
## ... Procrustes: rmse 0.0002224853 max resid 0.0003963738
## ... Similar to previous best
## Run 309 stress 9.570158e-05
## ... Procrustes: rmse 0.0001535806 max resid 0.0003333251
## ... Similar to previous best
## Run 310 stress 8.892742e-05
## ... Procrustes: rmse 0.0001258947 max resid 0.0002321976
## ... Similar to previous best
## Run 311 stress 9.981091e-05
## ... Procrustes: rmse 0.0003488082 max resid 0.0006126613
## ... Similar to previous best
## Run 312 stress 9.893508e-05
## ... Procrustes: rmse 0.0003376705 max resid 0.0006458987
## ... Similar to previous best
## Run 313 stress 9.634322e-05
## ... Procrustes: rmse 0.0001940572 max resid 0.0003302235
## ... Similar to previous best
## Run 314 stress 9.811456e-05
## ... Procrustes: rmse 0.0003157286 max resid 0.0006340475
## ... Similar to previous best
## Run 315 stress 9.811382e-05
## ... Procrustes: rmse 0.0001280968 max resid 0.0003316811
## ... Similar to previous best
## Run 316 stress 9.828801e-05
## ... Procrustes: rmse 0.0002786088 max resid 0.0004786343
## ... Similar to previous best
## Run 317 stress 9.997196e-05
## ... Procrustes: rmse 0.0003441001 max resid 0.000645948
## ... Similar to previous best
## Run 318 stress 9.82846e-05
## ... Procrustes: rmse 0.0002735733 max resid 0.0004920144
## ... Similar to previous best
## Run 319 stress 9.656541e-05
## ... Procrustes: rmse 0.0001555902 max resid 0.0003371599
## ... Similar to previous best
## Run 320 stress 0.2448021
## Run 321 stress 9.782779e-05
## ... Procrustes: rmse 0.0003056194 max resid 0.0006169381
## ... Similar to previous best
## Run 322 stress 9.949768e-05
## ... Procrustes: rmse 0.0003400436 max resid 0.0005622704
## ... Similar to previous best
## Run 323 stress 9.925983e-05
## ... Procrustes: rmse 0.0003110373 max resid 0.0004786162
## ... Similar to previous best
## Run 324 stress 8.053355e-05
## ... Procrustes: rmse 0.0001043356 max resid 0.0002105651
## ... Similar to previous best
## Run 325 stress 9.915558e-05
## ... Procrustes: rmse 0.000161085 max resid 0.0003438416
## ... Similar to previous best
## Run 326 stress 9.902138e-05
## ... Procrustes: rmse 0.0003382426 max resid 0.000561703
## ... Similar to previous best
## Run 327 stress 9.799901e-05
## ... Procrustes: rmse 0.0002535463 max resid 0.0004363612
## ... Similar to previous best
## Run 328 stress 9.913711e-05
## ... Procrustes: rmse 0.0003255968 max resid 0.0005772349
## ... Similar to previous best
## Run 329 stress 9.545764e-05
## ... Procrustes: rmse 0.0001921385 max resid 0.0003183518
## ... Similar to previous best
## Run 330 stress 9.762134e-05
## ... Procrustes: rmse 0.0001532064 max resid 0.0003283446
## ... Similar to previous best
## Run 331 stress 9.909103e-05
## ... Procrustes: rmse 0.000341694 max resid 0.0006403127
## ... Similar to previous best
## Run 332 stress 9.811065e-05
## ... Procrustes: rmse 0.0001256543 max resid 0.0003000342
## ... Similar to previous best
## Run 333 stress 9.84776e-05
## ... Procrustes: rmse 0.0002458006 max resid 0.0004857166
## ... Similar to previous best
## Run 334 stress 9.706712e-05
## ... Procrustes: rmse 0.0003305344 max resid 0.0005439644
## ... Similar to previous best
## Run 335 stress 9.730436e-05
## ... Procrustes: rmse 0.0002988661 max resid 0.0005754422
## ... Similar to previous best
## Run 336 stress 9.824136e-05
## ... Procrustes: rmse 0.000235336 max resid 0.0003796137
## ... Similar to previous best
## Run 337 stress 9.917672e-05
## ... Procrustes: rmse 0.0002760349 max resid 0.0004655461
## ... Similar to previous best
## Run 338 stress 9.875023e-05
## ... Procrustes: rmse 0.000331636 max resid 0.0005057171
## ... Similar to previous best
## Run 339 stress 9.537781e-05
## ... Procrustes: rmse 0.0001542121 max resid 0.0003383046
## ... Similar to previous best
## Run 340 stress 0.2581126
## Run 341 stress 9.682342e-05
## ... Procrustes: rmse 0.0001785741 max resid 0.0003380405
## ... Similar to previous best
## Run 342 stress 9.762929e-05
## ... Procrustes: rmse 0.0002392781 max resid 0.0003605404
## ... Similar to previous best
## Run 343 stress 9.9302e-05
## ... Procrustes: rmse 0.0001523676 max resid 0.0002517062
## ... Similar to previous best
## Run 344 stress 9.885644e-05
## ... Procrustes: rmse 0.0003408411 max resid 0.0006373318
## ... Similar to previous best
## Run 345 stress 9.644944e-05
## ... Procrustes: rmse 0.00012269 max resid 0.0002919332
## ... Similar to previous best
## Run 346 stress 9.859703e-05
## ... Procrustes: rmse 0.0003438252 max resid 0.0006027701
## ... Similar to previous best
## Run 347 stress 9.616376e-05
## ... Procrustes: rmse 0.0002071857 max resid 0.000394745
## ... Similar to previous best
## Run 348 stress 9.693831e-05
## ... Procrustes: rmse 0.0002917195 max resid 0.0005986035
## ... Similar to previous best
## Run 349 stress 9.915154e-05
## ... Procrustes: rmse 0.0002350371 max resid 0.0004809949
## ... Similar to previous best
## Run 350 stress 9.604154e-05
## ... Procrustes: rmse 0.0002451802 max resid 0.000484687
## ... Similar to previous best
## Run 351 stress 9.84665e-05
## ... Procrustes: rmse 0.0002647504 max resid 0.0004076352
## ... Similar to previous best
## Run 352 stress 9.788236e-05
## ... Procrustes: rmse 0.0003334459 max resid 0.0006133868
## ... Similar to previous best
## Run 353 stress 9.549359e-05
## ... Procrustes: rmse 0.0003019357 max resid 0.0005892031
## ... Similar to previous best
## Run 354 stress 9.651087e-05
## ... Procrustes: rmse 0.0003316841 max resid 0.0006255532
## ... Similar to previous best
## Run 355 stress 9.951612e-05
## ... Procrustes: rmse 0.00034775 max resid 0.0006106964
## ... Similar to previous best
## Run 356 stress 9.66372e-05
## ... Procrustes: rmse 0.0003339842 max resid 0.0006223234
## ... Similar to previous best
## Run 357 stress 9.858456e-05
## ... Procrustes: rmse 0.0003210377 max resid 0.0006451375
## ... Similar to previous best
## Run 358 stress 9.550965e-05
## ... Procrustes: rmse 5.506163e-05 max resid 0.0001012085
## ... Similar to previous best
## Run 359 stress 9.840164e-05
## ... Procrustes: rmse 0.0003210439 max resid 0.0004814805
## ... Similar to previous best
## Run 360 stress 9.739369e-05
## ... Procrustes: rmse 0.0003284322 max resid 0.0004994853
## ... Similar to previous best
## Run 361 stress 9.480052e-05
## ... Procrustes: rmse 0.0001567475 max resid 0.0003433006
## ... Similar to previous best
## Run 362 stress 9.83742e-05
## ... Procrustes: rmse 0.0003377956 max resid 0.0006240967
## ... Similar to previous best
## Run 363 stress 9.96228e-05
## ... Procrustes: rmse 0.000343335 max resid 0.0006425712
## ... Similar to previous best
## Run 364 stress 9.865166e-05
## ... Procrustes: rmse 0.0002641713 max resid 0.0004060927
## ... Similar to previous best
## Run 365 stress 9.712131e-05
## ... Procrustes: rmse 0.0001460172 max resid 0.0002493672
## ... Similar to previous best
## Run 366 stress 9.864513e-05
## ... Procrustes: rmse 0.0003396911 max resid 0.0006318743
## ... Similar to previous best
## Run 367 stress 9.866556e-05
## ... Procrustes: rmse 0.000193333 max resid 0.0003442633
## ... Similar to previous best
## Run 368 stress 9.338276e-05
## ... Procrustes: rmse 0.0003135719 max resid 0.0005843685
## ... Similar to previous best
## Run 369 stress 9.233205e-05
## ... Procrustes: rmse 0.0001504133 max resid 0.0003668752
## ... Similar to previous best
## Run 370 stress 9.815638e-05
## ... Procrustes: rmse 0.0003343007 max resid 0.0005483466
## ... Similar to previous best
## Run 371 stress 9.768115e-05
## ... Procrustes: rmse 0.0002769301 max resid 0.0004743254
## ... Similar to previous best
## Run 372 stress 9.839534e-05
## ... Procrustes: rmse 0.0003326415 max resid 0.0006311331
## ... Similar to previous best
## Run 373 stress 9.800866e-05
## ... Procrustes: rmse 0.0002933611 max resid 0.0006020318
## ... Similar to previous best
## Run 374 stress 9.74461e-05
## ... Procrustes: rmse 0.0002493761 max resid 0.0004897924
## ... Similar to previous best
## Run 375 stress 9.99766e-05
## ... Procrustes: rmse 0.0002791027 max resid 0.0004747043
## ... Similar to previous best
## Run 376 stress 9.604714e-05
## ... Procrustes: rmse 0.0002411919 max resid 0.0004778243
## ... Similar to previous best
## Run 377 stress 9.351193e-05
## ... Procrustes: rmse 0.0001878585 max resid 0.000285031
## ... Similar to previous best
## Run 378 stress 9.629118e-05
## ... Procrustes: rmse 0.0001564018 max resid 0.0003373607
## ... Similar to previous best
## Run 379 stress 9.508753e-05
## ... Procrustes: rmse 0.0001741452 max resid 0.0003804773
## ... Similar to previous best
## Run 380 stress 9.96534e-05
## ... Procrustes: rmse 0.000192972 max resid 0.0003441
## ... Similar to previous best
## Run 381 stress 9.062629e-05
## ... Procrustes: rmse 0.000189366 max resid 0.000311047
## ... Similar to previous best
## Run 382 stress 9.95134e-05
## ... Procrustes: rmse 0.000281538 max resid 0.0004851493
## ... Similar to previous best
## Run 383 stress 9.622764e-05
## ... Procrustes: rmse 0.0001416513 max resid 0.0002418381
## ... Similar to previous best
## Run 384 stress 9.792373e-05
## ... Procrustes: rmse 0.0001435589 max resid 0.000312618
## ... Similar to previous best
## Run 385 stress 9.845884e-05
## ... Procrustes: rmse 0.0002568944 max resid 0.0004945651
## ... Similar to previous best
## Run 386 stress 9.816982e-05
## ... Procrustes: rmse 0.0003350572 max resid 0.0005542451
## ... Similar to previous best
## Run 387 stress 9.513616e-05
## ... Procrustes: rmse 0.0001731956 max resid 0.0003078997
## ... Similar to previous best
## Run 388 stress 9.979887e-05
## ... Procrustes: rmse 0.0003317742 max resid 0.0005573459
## ... Similar to previous best
## Run 389 stress 9.43632e-05
## ... Procrustes: rmse 0.0001210793 max resid 0.0002949282
## ... Similar to previous best
## Run 390 stress 9.639645e-05
## ... Procrustes: rmse 0.000323853 max resid 0.0004911747
## ... Similar to previous best
## Run 391 stress 9.900937e-05
## ... Procrustes: rmse 0.0003324756 max resid 0.0005049848
## ... Similar to previous best
## Run 392 stress 9.709351e-05
## ... Procrustes: rmse 0.0001774759 max resid 0.0003102059
## ... Similar to previous best
## Run 393 stress 9.880357e-05
## ... Procrustes: rmse 0.0002965573 max resid 0.0006074996
## ... Similar to previous best
## Run 394 stress 9.82632e-05
## ... Procrustes: rmse 0.0003471768 max resid 0.000659688
## ... Similar to previous best
## Run 395 stress 9.583024e-05
## ... Procrustes: rmse 0.0001232691 max resid 0.0002965565
## ... Similar to previous best
## Run 396 stress 9.30383e-05
## ... Procrustes: rmse 0.0002162117 max resid 0.0003571044
## ... Similar to previous best
## Run 397 stress 8.577675e-05
## ... Procrustes: rmse 0.0001589673 max resid 0.0003582961
## ... Similar to previous best
## Run 398 stress 9.216253e-05
## ... Procrustes: rmse 0.0001677118 max resid 0.0003723602
## ... Similar to previous best
## Run 399 stress 8.960987e-05
## ... Procrustes: rmse 0.0002392034 max resid 0.0004056286
## ... Similar to previous best
## Run 400 stress 9.717591e-05
## ... Procrustes: rmse 0.0002777955 max resid 0.0005737107
## ... Similar to previous best
## Run 401 stress 9.491768e-05
## ... Procrustes: rmse 0.0003037587 max resid 0.0006154829
## ... Similar to previous best
## Run 402 stress 9.903029e-05
## ... Procrustes: rmse 0.0001258364 max resid 0.0002608561
## ... Similar to previous best
## Run 403 stress 9.930474e-05
## ... Procrustes: rmse 0.0001444602 max resid 0.0002488783
## ... Similar to previous best
## Run 404 stress 9.794006e-05
## ... Procrustes: rmse 0.0001946127 max resid 0.0004594688
## ... Similar to previous best
## Run 405 stress 9.310702e-05
## ... Procrustes: rmse 0.0001700986 max resid 0.0003749811
## ... Similar to previous best
## Run 406 stress 8.645332e-05
## ... Procrustes: rmse 0.0002945855 max resid 0.0005428686
## ... Similar to previous best
## Run 407 stress 9.691165e-05
## ... Procrustes: rmse 0.0001902747 max resid 0.0003612784
## ... Similar to previous best
## Run 408 stress 9.180479e-05
## ... Procrustes: rmse 0.000172588 max resid 0.0003556366
## ... Similar to previous best
## Run 409 stress 9.693583e-05
## ... Procrustes: rmse 0.0001948031 max resid 0.0003918202
## ... Similar to previous best
## Run 410 stress 9.803959e-05
## ... Procrustes: rmse 0.0001252863 max resid 0.0003135431
## ... Similar to previous best
## Run 411 stress 9.780679e-05
## ... Procrustes: rmse 0.0002316877 max resid 0.0003767378
## ... Similar to previous best
## Run 412 stress 9.955093e-05
## ... Procrustes: rmse 0.0001416407 max resid 0.0003571935
## ... Similar to previous best
## Run 413 stress 9.719574e-05
## ... Procrustes: rmse 0.0002498391 max resid 0.0004331889
## ... Similar to previous best
## Run 414 stress 9.982919e-05
## ... Procrustes: rmse 0.0001453216 max resid 0.0002420648
## ... Similar to previous best
## Run 415 stress 8.166527e-05
## ... Procrustes: rmse 0.0001954743 max resid 0.000398208
## ... Similar to previous best
## Run 416 stress 9.921356e-05
## ... Procrustes: rmse 0.000184797 max resid 0.0004325044
## ... Similar to previous best
## Run 417 stress 9.898688e-05
## ... Procrustes: rmse 0.0003401246 max resid 0.0006343251
## ... Similar to previous best
## Run 418 stress 9.879158e-05
## ... Procrustes: rmse 0.0002504924 max resid 0.0004902897
## ... Similar to previous best
## Run 419 stress 9.679115e-05
## ... Procrustes: rmse 0.0002456385 max resid 0.0004862883
## ... Similar to previous best
## Run 420 stress 9.607712e-05
## ... Procrustes: rmse 0.0001866545 max resid 0.0003341795
## ... Similar to previous best
## Run 421 stress 9.656944e-05
## ... Procrustes: rmse 0.0001450582 max resid 0.0002483846
## ... Similar to previous best
## Run 422 stress 9.976295e-05
## ... Procrustes: rmse 0.0001173679 max resid 0.000260433
## ... Similar to previous best
## Run 423 stress 9.756782e-05
## ... Procrustes: rmse 0.0002937834 max resid 0.0006026127
## ... Similar to previous best
## Run 424 stress 9.843132e-05
## ... Procrustes: rmse 0.0003111529 max resid 0.0006449732
## ... Similar to previous best
## Run 425 stress 9.889182e-05
## ... Procrustes: rmse 0.0003453687 max resid 0.0006057234
## ... Similar to previous best
## Run 426 stress 0.2627752
## Run 427 stress 9.259338e-05
## ... Procrustes: rmse 0.0001397265 max resid 0.0003757591
## ... Similar to previous best
## Run 428 stress 9.599278e-05
## ... Procrustes: rmse 0.0001436642 max resid 0.0002458114
## ... Similar to previous best
## Run 429 stress 9.691742e-05
## ... Procrustes: rmse 0.0001833701 max resid 0.000348537
## ... Similar to previous best
## Run 430 stress 9.527245e-05
## ... Procrustes: rmse 0.0003039256 max resid 0.0005219848
## ... Similar to previous best
## Run 431 stress 9.866555e-05
## ... Procrustes: rmse 0.0003095935 max resid 0.0006061341
## ... Similar to previous best
## Run 432 stress 9.895693e-05
## ... Procrustes: rmse 0.00029757 max resid 0.0006102012
## ... Similar to previous best
## Run 433 stress 8.696061e-05
## ... Procrustes: rmse 0.0001899131 max resid 0.0003553055
## ... Similar to previous best
## Run 434 stress 9.043206e-05
## ... Procrustes: rmse 0.0001473493 max resid 0.0003223272
## ... Similar to previous best
## Run 435 stress 9.768803e-05
## ... Procrustes: rmse 0.0001781754 max resid 0.0003128706
## ... Similar to previous best
## Run 436 stress 9.806014e-05
## ... Procrustes: rmse 0.0002329206 max resid 0.0003768569
## ... Similar to previous best
## Run 437 stress 9.427878e-05
## ... Procrustes: rmse 0.0002563089 max resid 0.0004427149
## ... Similar to previous best
## Run 438 stress 9.578318e-05
## ... Procrustes: rmse 0.0001229641 max resid 0.0002949951
## ... Similar to previous best
## Run 439 stress 9.95497e-05
## ... Procrustes: rmse 0.0001296941 max resid 0.0003117162
## ... Similar to previous best
## Run 440 stress 9.814524e-05
## ... Procrustes: rmse 0.000254132 max resid 0.0004368651
## ... Similar to previous best
## Run 441 stress 9.973094e-05
## ... Procrustes: rmse 0.0003203357 max resid 0.0006440372
## ... Similar to previous best
## Run 442 stress 9.979218e-05
## ... Procrustes: rmse 0.0001832233 max resid 0.0003230933
## ... Similar to previous best
## Run 443 stress 9.928948e-05
## ... Procrustes: rmse 0.0002888894 max resid 0.0005966352
## ... Similar to previous best
## Run 444 stress 9.786327e-05
## ... Procrustes: rmse 0.0001260027 max resid 0.0002992727
## ... Similar to previous best
## Run 445 stress 9.928982e-05
## ... Procrustes: rmse 0.000287352 max resid 0.0005900698
## ... Similar to previous best
## Run 446 stress 9.993935e-05
## ... Procrustes: rmse 0.0002973588 max resid 0.0006079855
## ... Similar to previous best
## Run 447 stress 9.637831e-05
## ... Procrustes: rmse 0.0001473203 max resid 0.0002468084
## ... Similar to previous best
## Run 448 stress 9.891465e-05
## ... Procrustes: rmse 0.0001910735 max resid 0.0003569343
## ... Similar to previous best
## Run 449 stress 9.182631e-05
## ... Procrustes: rmse 0.0001107935 max resid 0.0002756857
## ... Similar to previous best
## Run 450 stress 9.593011e-05
## ... Procrustes: rmse 0.000307512 max resid 0.0005623147
## ... Similar to previous best
## Run 451 stress 9.609121e-05
## ... Procrustes: rmse 0.000270248 max resid 0.0004640325
## ... Similar to previous best
## Run 452 stress 9.962634e-05
## ... Procrustes: rmse 0.0003329801 max resid 0.0005045624
## ... Similar to previous best
## Run 453 stress 9.494063e-05
## ... Procrustes: rmse 0.000150661 max resid 0.0003093652
## ... Similar to previous best
## Run 454 stress 9.979453e-05
## ... Procrustes: rmse 0.0003231021 max resid 0.0006211751
## ... Similar to previous best
## Run 455 stress 9.645678e-05
## ... Procrustes: rmse 0.0003049812 max resid 0.0006352157
## ... Similar to previous best
## Run 456 stress 9.448096e-05
## ... Procrustes: rmse 0.0002383031 max resid 0.0004748696
## ... Similar to previous best
## Run 457 stress 9.939426e-05
## ... Procrustes: rmse 0.0003408245 max resid 0.0006349978
## ... Similar to previous best
## Run 458 stress 9.74302e-05
## ... Procrustes: rmse 0.0001990026 max resid 0.0003342293
## ... Similar to previous best
## Run 459 stress 9.916113e-05
## ... Procrustes: rmse 0.0002915401 max resid 0.0006004617
## ... Similar to previous best
## Run 460 stress 9.563531e-05
## ... Procrustes: rmse 0.0001412713 max resid 0.0002453954
## ... Similar to previous best
## Run 461 stress 9.943822e-05
## ... Procrustes: rmse 0.0003349849 max resid 0.0005105608
## ... Similar to previous best
## Run 462 stress 9.77079e-05
## ... Procrustes: rmse 0.000239755 max resid 0.000360139
## ... Similar to previous best
## Run 463 stress 9.779357e-05
## ... Procrustes: rmse 0.0002334893 max resid 0.0003769402
## ... Similar to previous best
## Run 464 stress 9.706119e-05
## ... Procrustes: rmse 0.0001572114 max resid 0.0002580487
## ... Similar to previous best
## Run 465 stress 9.685242e-05
## ... Procrustes: rmse 0.0002787052 max resid 0.0005860636
## ... Similar to previous best
## Run 466 stress 9.994108e-05
## ... Procrustes: rmse 0.0002558687 max resid 0.000498103
## ... Similar to previous best
## Run 467 stress 9.156996e-05
## ... Procrustes: rmse 0.0001153147 max resid 0.0002979971
## ... Similar to previous best
## Run 468 stress 0.2357285
## Run 469 stress 9.79154e-05
## ... Procrustes: rmse 0.0003392464 max resid 0.0005955055
## ... Similar to previous best
## Run 470 stress 9.92524e-05
## ... Procrustes: rmse 0.0003358717 max resid 0.0005509625
## ... Similar to previous best
## Run 471 stress 9.867965e-05
## ... Procrustes: rmse 0.00019014 max resid 0.0003564503
## ... Similar to previous best
## Run 472 stress 9.585511e-05
## ... Procrustes: rmse 0.000331081 max resid 0.0006152963
## ... Similar to previous best
## Run 473 stress 8.915309e-05
## ... Procrustes: rmse 0.0002249536 max resid 0.0004588856
## ... Similar to previous best
## Run 474 stress 9.692544e-05
## ... Procrustes: rmse 0.0001241845 max resid 0.0002955527
## ... Similar to previous best
## Run 475 stress 9.666023e-05
## ... Procrustes: rmse 0.0002298208 max resid 0.0003715493
## ... Similar to previous best
## Run 476 stress 9.378322e-05
## ... Procrustes: rmse 0.0002798617 max resid 0.0005789074
## ... Similar to previous best
## Run 477 stress 9.486854e-05
## ... Procrustes: rmse 0.0001733573 max resid 0.0003077551
## ... Similar to previous best
## Run 478 stress 9.874413e-05
## ... Procrustes: rmse 0.0003404292 max resid 0.0006360096
## ... Similar to previous best
## Run 479 stress 9.944239e-05
## ... Procrustes: rmse 0.0002448896 max resid 0.0004838484
## ... Similar to previous best
## Run 480 stress 9.850921e-05
## ... Procrustes: rmse 0.0003116282 max resid 0.0006065741
## ... Similar to previous best
## Run 481 stress 9.832606e-05
## ... Procrustes: rmse 0.0001923117 max resid 0.0003448231
## ... Similar to previous best
## Run 482 stress 9.952582e-05
## ... Procrustes: rmse 0.000314477 max resid 0.0006104126
## ... Similar to previous best
## Run 483 stress 9.979053e-05
## ... Procrustes: rmse 0.0003491432 max resid 0.0006131709
## ... Similar to previous best
## Run 484 stress 9.865426e-05
## ... Procrustes: rmse 0.00025233 max resid 0.000493016
## ... Similar to previous best
## Run 485 stress 9.933828e-05
## ... Procrustes: rmse 0.0003358152 max resid 0.0005504408
## ... Similar to previous best
## Run 486 stress 9.897096e-05
## ... Procrustes: rmse 0.0001516298 max resid 0.0002516696
## ... Similar to previous best
## Run 487 stress 9.150479e-05
## ... Procrustes: rmse 0.0001678813 max resid 0.0003715403
## ... Similar to previous best
## Run 488 stress 9.518695e-05
## ... Procrustes: rmse 0.000121656 max resid 0.000299594
## ... Similar to previous best
## Run 489 stress 9.833361e-05
## ... Procrustes: rmse 0.0002488807 max resid 0.0004895553
## ... Similar to previous best
## Run 490 stress 9.919496e-05
## ... Procrustes: rmse 0.0003388692 max resid 0.0005628293
## ... Similar to previous best
## Run 491 stress 9.524463e-05
## ... Procrustes: rmse 0.0003239924 max resid 0.0005361357
## ... Similar to previous best
## Run 492 stress 9.56446e-05
## ... Procrustes: rmse 0.0002239155 max resid 0.0003670331
## ... Similar to previous best
## Run 493 stress 9.530466e-05
## ... Procrustes: rmse 0.000234316 max resid 0.0004700335
## ... Similar to previous best
## Run 494 stress 9.835092e-05
## ... Procrustes: rmse 0.0001759861 max resid 0.000382952
## ... Similar to previous best
## Run 495 stress 9.725162e-05
## ... Procrustes: rmse 0.0002466919 max resid 0.0004874793
## ... Similar to previous best
## Run 496 stress 9.28143e-05
## ... Procrustes: rmse 0.0001633103 max resid 0.0003629456
## ... Similar to previous best
## Run 497 stress 9.927771e-05
## ... Procrustes: rmse 0.0001472264 max resid 0.0002518653
## ... Similar to previous best
## Run 498 stress 9.993281e-05
## ... Procrustes: rmse 0.0001742422 max resid 0.0003186161
## ... Similar to previous best
## Run 499 stress 9.627144e-05
## ... Procrustes: rmse 0.0002895768 max resid 0.0005956214
## ... Similar to previous best
## Run 500 stress 8.986514e-05
## ... Procrustes: rmse 0.000146835 max resid 0.0003205697
## ... Similar to previous best
## *** Best solution repeated 232 times## Warning in metaMDS(pdeso_dist, try = 1000, parallel = 4, previous.best, :
## stress is (nearly) zero: you may have insufficient data### Biogeographic
pdb_NMDS <- metaMDS(pdb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.08126274
## Run 1 stress 0.0898624
## Run 2 stress 0.08214344
## Run 3 stress 0.08152768
## ... Procrustes: rmse 0.01614718 max resid 0.05109388
## Run 4 stress 0.1059303
## Run 5 stress 0.08269655
## Run 6 stress 0.08976426
## Run 7 stress 0.08269666
## Run 8 stress 0.08156447
## ... Procrustes: rmse 0.02288236 max resid 0.07971365
## Run 9 stress 0.1078434
## Run 10 stress 0.08156448
## ... Procrustes: rmse 0.02289508 max resid 0.07984469
## Run 11 stress 0.0815544
## ... Procrustes: rmse 0.01385916 max resid 0.05232924
## Run 12 stress 0.0815544
## ... Procrustes: rmse 0.01383552 max resid 0.05220807
## Run 13 stress 0.09031456
## Run 14 stress 0.09097327
## Run 15 stress 0.08106097
## ... New best solution
## ... Procrustes: rmse 0.01028676 max resid 0.03732631
## Run 16 stress 0.09031454
## Run 17 stress 0.1078435
## Run 18 stress 0.08155429
## ... Procrustes: rmse 0.01793862 max resid 0.05403403
## Run 19 stress 0.09128269
## Run 20 stress 0.08214344
## Run 21 stress 0.08976422
## Run 22 stress 0.08126269
## ... Procrustes: rmse 0.01029081 max resid 0.03727235
## Run 23 stress 0.08152784
## ... Procrustes: rmse 0.01412085 max resid 0.05314554
## Run 24 stress 0.08155428
## ... Procrustes: rmse 0.01793443 max resid 0.0539897
## Run 25 stress 0.08155441
## ... Procrustes: rmse 0.01794413 max resid 0.05411477
## Run 26 stress 0.08269671
## Run 27 stress 0.08155451
## ... Procrustes: rmse 0.01794459 max resid 0.05414081
## Run 28 stress 0.100381
## Run 29 stress 0.08976395
## Run 30 stress 0.0908595
## Run 31 stress 0.09097328
## Run 32 stress 0.08106097
## ... New best solution
## ... Procrustes: rmse 0.0002419789 max resid 0.0008765032
## ... Similar to previous best
## Run 33 stress 0.1048345
## Run 34 stress 0.08155438
## ... Procrustes: rmse 0.0178867 max resid 0.05362103
## Run 35 stress 0.08126276
## ... Procrustes: rmse 0.01028034 max resid 0.03724729
## Run 36 stress 0.08156446
## Run 37 stress 0.1029437
## Run 38 stress 0.08269663
## Run 39 stress 0.08976409
## Run 40 stress 0.08156447
## Run 41 stress 0.08126272
## ... Procrustes: rmse 0.01026407 max resid 0.03718216
## Run 42 stress 0.08106091
## ... New best solution
## ... Procrustes: rmse 7.511909e-05 max resid 0.0002520492
## ... Similar to previous best
## Run 43 stress 0.08126269
## ... Procrustes: rmse 0.01027911 max resid 0.03725041
## Run 44 stress 0.08152778
## ... Procrustes: rmse 0.01405063 max resid 0.0527734
## Run 45 stress 0.09031452
## Run 46 stress 0.08155444
## ... Procrustes: rmse 0.01791317 max resid 0.05372533
## Run 47 stress 0.08986239
## Run 48 stress 0.08126285
## ... Procrustes: rmse 0.01027068 max resid 0.03721449
## Run 49 stress 0.08986245
## Run 50 stress 0.08126269
## ... Procrustes: rmse 0.01027874 max resid 0.03724994
## Run 51 stress 0.08152777
## ... Procrustes: rmse 0.01405892 max resid 0.05281642
## Run 52 stress 0.09432779
## Run 53 stress 0.08152771
## ... Procrustes: rmse 0.01403681 max resid 0.05270201
## Run 54 stress 0.08152774
## ... Procrustes: rmse 0.01403596 max resid 0.05270066
## Run 55 stress 0.0815279
## ... Procrustes: rmse 0.01406589 max resid 0.05285172
## Run 56 stress 0.09024779
## Run 57 stress 0.09031451
## Run 58 stress 0.09097334
## Run 59 stress 0.08156447
## Run 60 stress 0.08986238
## Run 61 stress 0.08106092
## ... Procrustes: rmse 0.0001223993 max resid 0.0004272938
## ... Similar to previous best
## Run 62 stress 0.09097327
## Run 63 stress 0.08152778
## ... Procrustes: rmse 0.01405139 max resid 0.05277729
## Run 64 stress 0.1056117
## Run 65 stress 0.08155432
## ... Procrustes: rmse 0.01792417 max resid 0.05393273
## Run 66 stress 0.09149139
## Run 67 stress 0.08156446
## Run 68 stress 0.1061746
## Run 69 stress 0.08214351
## Run 70 stress 0.08126269
## ... Procrustes: rmse 0.01027954 max resid 0.03725335
## Run 71 stress 0.08214348
## Run 72 stress 0.1026422
## Run 73 stress 0.08126278
## ... Procrustes: rmse 0.01027389 max resid 0.03722871
## Run 74 stress 0.081061
## ... Procrustes: rmse 0.0001877529 max resid 0.0006762821
## ... Similar to previous best
## Run 75 stress 0.08156455
## Run 76 stress 0.08152787
## ... Procrustes: rmse 0.01406387 max resid 0.0528391
## Run 77 stress 0.08269655
## Run 78 stress 0.09079867
## Run 79 stress 0.1021548
## Run 80 stress 0.08126279
## ... Procrustes: rmse 0.01027298 max resid 0.0372253
## Run 81 stress 0.08155432
## ... Procrustes: rmse 0.01790763 max resid 0.05375063
## Run 82 stress 0.08214344
## Run 83 stress 0.1049027
## Run 84 stress 0.1012502
## Run 85 stress 0.08152775
## ... Procrustes: rmse 0.01396929 max resid 0.05232697
## Run 86 stress 0.08269647
## Run 87 stress 0.08152796
## ... Procrustes: rmse 0.01408444 max resid 0.05294667
## Run 88 stress 0.08986251
## Run 89 stress 0.1006555
## Run 90 stress 0.1050738
## Run 91 stress 0.09031459
## Run 92 stress 0.08152769
## ... Procrustes: rmse 0.01403092 max resid 0.05267063
## Run 93 stress 0.08156447
## Run 94 stress 0.08155435
## ... Procrustes: rmse 0.01793503 max resid 0.0540053
## Run 95 stress 0.08126271
## ... Procrustes: rmse 0.01027781 max resid 0.03724659
## Run 96 stress 0.08126273
## ... Procrustes: rmse 0.01027896 max resid 0.03725043
## Run 97 stress 0.1028355
## Run 98 stress 0.08155429
## ... Procrustes: rmse 0.01792671 max resid 0.05390948
## Run 99 stress 0.0815543
## ... Procrustes: rmse 0.0179384 max resid 0.05398106
## Run 100 stress 0.1029442
## Run 101 stress 0.08156446
## Run 102 stress 0.08156446
## Run 103 stress 0.09118065
## Run 104 stress 0.08152781
## ... Procrustes: rmse 0.01398641 max resid 0.05241261
## Run 105 stress 0.1057893
## Run 106 stress 0.1006558
## Run 107 stress 0.08152769
## ... Procrustes: rmse 0.01402938 max resid 0.05266382
## Run 108 stress 0.08155433
## ... Procrustes: rmse 0.01792358 max resid 0.05393083
## Run 109 stress 0.08156446
## Run 110 stress 0.08126272
## ... Procrustes: rmse 0.01027777 max resid 0.03724678
## Run 111 stress 0.08156447
## Run 112 stress 0.08986241
## Run 113 stress 0.08156448
## Run 114 stress 0.09128258
## Run 115 stress 0.09097327
## Run 116 stress 0.09222198
## Run 117 stress 0.08156447
## Run 118 stress 0.08214352
## Run 119 stress 0.09118068
## Run 120 stress 0.09118065
## Run 121 stress 0.09097329
## Run 122 stress 0.08155432
## ... Procrustes: rmse 0.01790819 max resid 0.05376312
## Run 123 stress 0.1057893
## Run 124 stress 0.08269668
## Run 125 stress 0.09118068
## Run 126 stress 0.0898624
## Run 127 stress 0.08986242
## Run 128 stress 0.08986244
## Run 129 stress 0.09097329
## Run 130 stress 0.09079867
## Run 131 stress 0.09208521
## Run 132 stress 0.08986265
## Run 133 stress 0.1019327
## Run 134 stress 0.09097328
## Run 135 stress 0.0812627
## ... Procrustes: rmse 0.01028985 max resid 0.03729163
## Run 136 stress 0.08106091
## ... Procrustes: rmse 0.0001058669 max resid 0.0003714009
## ... Similar to previous best
## Run 137 stress 0.08126269
## ... Procrustes: rmse 0.01028135 max resid 0.03725724
## Run 138 stress 0.08126281
## ... Procrustes: rmse 0.01027383 max resid 0.0372287
## Run 139 stress 0.08126284
## ... Procrustes: rmse 0.0102989 max resid 0.03731978
## Run 140 stress 0.08976393
## Run 141 stress 0.09128261
## Run 142 stress 0.09085948
## Run 143 stress 0.08269633
## Run 144 stress 0.0826967
## Run 145 stress 0.1041304
## Run 146 stress 0.09085945
## Run 147 stress 0.08106093
## ... Procrustes: rmse 0.0001114312 max resid 0.0004003324
## ... Similar to previous best
## Run 148 stress 0.08126271
## ... Procrustes: rmse 0.01027864 max resid 0.03725007
## Run 149 stress 0.08214347
## Run 150 stress 0.08156446
## Run 151 stress 0.08976402
## Run 152 stress 0.09031451
## Run 153 stress 0.08986239
## Run 154 stress 0.08156446
## Run 155 stress 0.08976406
## Run 156 stress 0.08155438
## ... Procrustes: rmse 0.01794319 max resid 0.05392042
## Run 157 stress 0.09024779
## Run 158 stress 0.09128263
## Run 159 stress 0.08156448
## Run 160 stress 0.09031462
## Run 161 stress 0.09085953
## Run 162 stress 0.09118075
## Run 163 stress 0.08155429
## ... Procrustes: rmse 0.01791521 max resid 0.05382036
## Run 164 stress 0.09131345
## Run 165 stress 0.08976448
## Run 166 stress 0.08126284
## ... Procrustes: rmse 0.01029936 max resid 0.03732032
## Run 167 stress 0.09128264
## Run 168 stress 0.0898626
## Run 169 stress 0.09118065
## Run 170 stress 0.08986242
## Run 171 stress 0.08126271
## ... Procrustes: rmse 0.01027783 max resid 0.03724672
## Run 172 stress 0.08106102
## ... Procrustes: rmse 0.0001063894 max resid 0.0003612123
## ... Similar to previous best
## Run 173 stress 0.08156446
## Run 174 stress 0.08152769
## ... Procrustes: rmse 0.01402927 max resid 0.05266362
## Run 175 stress 0.08156446
## Run 176 stress 0.1012499
## Run 177 stress 0.09079866
## Run 178 stress 0.08156448
## Run 179 stress 0.0909733
## Run 180 stress 0.09085954
## Run 181 stress 0.1070554
## Run 182 stress 0.0821435
## Run 183 stress 0.0902478
## Run 184 stress 0.08986241
## Run 185 stress 0.08155437
## ... Procrustes: rmse 0.01792877 max resid 0.05397903
## Run 186 stress 0.09118059
## Run 187 stress 0.1078432
## Run 188 stress 0.08156451
## Run 189 stress 0.09149138
## Run 190 stress 0.1061424
## Run 191 stress 0.08156446
## Run 192 stress 0.09118059
## Run 193 stress 0.1070554
## Run 194 stress 0.09097344
## Run 195 stress 0.09097331
## Run 196 stress 0.0902479
## Run 197 stress 0.08156446
## Run 198 stress 0.08214345
## Run 199 stress 0.08156446
## Run 200 stress 0.08156446
## Run 201 stress 0.09085943
## Run 202 stress 0.1049027
## Run 203 stress 0.09149136
## Run 204 stress 0.08156453
## Run 205 stress 0.08976416
## Run 206 stress 0.08976411
## Run 207 stress 0.08106093
## ... Procrustes: rmse 3.955486e-05 max resid 0.000133627
## ... Similar to previous best
## Run 208 stress 0.1012499
## Run 209 stress 0.08106098
## ... Procrustes: rmse 0.0001729993 max resid 0.0006239717
## ... Similar to previous best
## Run 210 stress 0.08106098
## ... Procrustes: rmse 0.0001698249 max resid 0.0006154298
## ... Similar to previous best
## Run 211 stress 0.09031451
## Run 212 stress 0.08986263
## Run 213 stress 0.08106104
## ... Procrustes: rmse 0.0001326087 max resid 0.0004530076
## ... Similar to previous best
## Run 214 stress 0.08156447
## Run 215 stress 0.0821435
## Run 216 stress 0.08126277
## ... Procrustes: rmse 0.01029528 max resid 0.03730848
## Run 217 stress 0.0903145
## Run 218 stress 0.09118069
## Run 219 stress 0.08155438
## ... Procrustes: rmse 0.01789729 max resid 0.05367205
## Run 220 stress 0.0810609
## ... New best solution
## ... Procrustes: rmse 7.538173e-05 max resid 0.0002605305
## ... Similar to previous best
## Run 221 stress 0.08126276
## ... Procrustes: rmse 0.01028586 max resid 0.03728053
## Run 222 stress 0.08155438
## ... Procrustes: rmse 0.01794158 max resid 0.05404671
## Run 223 stress 0.08106092
## ... Procrustes: rmse 9.395707e-05 max resid 0.000322506
## ... Similar to previous best
## Run 224 stress 0.09079866
## Run 225 stress 0.08156448
## Run 226 stress 0.08152767
## ... Procrustes: rmse 0.01400901 max resid 0.05254267
## Run 227 stress 0.08986244
## Run 228 stress 0.08106097
## ... Procrustes: rmse 9.60657e-05 max resid 0.0003453742
## ... Similar to previous best
## Run 229 stress 0.08155432
## ... Procrustes: rmse 0.01796082 max resid 0.05404942
## Run 230 stress 0.08156446
## Run 231 stress 0.09079867
## Run 232 stress 0.08156448
## Run 233 stress 0.08986242
## Run 234 stress 0.08156456
## Run 235 stress 0.09128258
## Run 236 stress 0.09085951
## Run 237 stress 0.1057893
## Run 238 stress 0.09024781
## Run 239 stress 0.08214345
## Run 240 stress 0.08126285
## ... Procrustes: rmse 0.0103137 max resid 0.03737106
## Run 241 stress 0.09024781
## Run 242 stress 0.08156448
## Run 243 stress 0.08156447
## Run 244 stress 0.08156449
## Run 245 stress 0.0911806
## Run 246 stress 0.0815645
## Run 247 stress 0.0911806
## Run 248 stress 0.08152772
## ... Procrustes: rmse 0.01397059 max resid 0.05234225
## Run 249 stress 0.09085947
## Run 250 stress 0.3566728
## Run 251 stress 0.08986241
## Run 252 stress 0.08156446
## Run 253 stress 0.0810609
## ... New best solution
## ... Procrustes: rmse 5.360538e-06 max resid 1.361445e-05
## ... Similar to previous best
## Run 254 stress 0.1049027
## Run 255 stress 0.09079865
## Run 256 stress 0.08976408
## Run 257 stress 0.08269683
## Run 258 stress 0.09118064
## Run 259 stress 0.08106092
## ... Procrustes: rmse 4.649111e-05 max resid 0.0001632013
## ... Similar to previous best
## Run 260 stress 0.08214355
## Run 261 stress 0.08214344
## Run 262 stress 0.08156446
## Run 263 stress 0.08156447
## Run 264 stress 0.08152764
## ... Procrustes: rmse 0.01401601 max resid 0.05258429
## Run 265 stress 0.0914915
## Run 266 stress 0.08156449
## Run 267 stress 0.08156452
## Run 268 stress 0.09118053
## Run 269 stress 0.0912826
## Run 270 stress 0.0912826
## Run 271 stress 0.0902478
## Run 272 stress 0.0902478
## Run 273 stress 0.0898625
## Run 274 stress 0.09085943
## Run 275 stress 0.3562761
## Run 276 stress 0.08126283
## ... Procrustes: rmse 0.01028112 max resid 0.03725946
## Run 277 stress 0.08156446
## Run 278 stress 0.0815645
## Run 279 stress 0.09232382
## Run 280 stress 0.08126282
## ... Procrustes: rmse 0.01028266 max resid 0.03726599
## Run 281 stress 0.08986242
## Run 282 stress 0.08976461
## Run 283 stress 0.08156446
## Run 284 stress 0.09097328
## Run 285 stress 0.08986275
## Run 286 stress 0.09024779
## Run 287 stress 0.0815645
## Run 288 stress 0.09432765
## Run 289 stress 0.08986255
## Run 290 stress 0.08214344
## Run 291 stress 0.08976415
## Run 292 stress 0.09118055
## Run 293 stress 0.08155432
## ... Procrustes: rmse 0.01791958 max resid 0.05381936
## Run 294 stress 0.09031452
## Run 295 stress 0.09097332
## Run 296 stress 0.08152778
## ... Procrustes: rmse 0.01395094 max resid 0.05223365
## Run 297 stress 0.08156448
## Run 298 stress 0.08986246
## Run 299 stress 0.08106091
## ... Procrustes: rmse 7.238446e-05 max resid 0.0002542883
## ... Similar to previous best
## Run 300 stress 0.08156447
## Run 301 stress 0.08152764
## ... Procrustes: rmse 0.01402395 max resid 0.05262819
## Run 302 stress 0.09097331
## Run 303 stress 0.08986249
## Run 304 stress 0.08214346
## Run 305 stress 0.1049026
## Run 306 stress 0.1041614
## Run 307 stress 0.08156447
## Run 308 stress 0.08156449
## Run 309 stress 0.09024784
## Run 310 stress 0.09085948
## Run 311 stress 0.08126272
## ... Procrustes: rmse 0.01028732 max resid 0.03728405
## Run 312 stress 0.08155429
## ... Procrustes: rmse 0.01794188 max resid 0.05399798
## Run 313 stress 0.08156449
## Run 314 stress 0.08126268
## ... Procrustes: rmse 0.01029117 max resid 0.03729893
## Run 315 stress 0.08156446
## Run 316 stress 0.08155431
## ... Procrustes: rmse 0.01793202 max resid 0.05396355
## Run 317 stress 0.08269681
## Run 318 stress 0.08156448
## Run 319 stress 0.08126272
## ... Procrustes: rmse 0.01028694 max resid 0.03728332
## Run 320 stress 0.0908595
## Run 321 stress 0.09085944
## Run 322 stress 0.08126275
## ... Procrustes: rmse 0.01028881 max resid 0.03729074
## Run 323 stress 0.08976468
## Run 324 stress 0.1016169
## Run 325 stress 0.08986243
## Run 326 stress 0.08156449
## Run 327 stress 0.09097338
## Run 328 stress 0.08976451
## Run 329 stress 0.08156447
## Run 330 stress 0.09443166
## Run 331 stress 0.08155428
## ... Procrustes: rmse 0.01792551 max resid 0.05390722
## Run 332 stress 0.08156447
## Run 333 stress 0.08156446
## Run 334 stress 0.08152776
## ... Procrustes: rmse 0.0140594 max resid 0.05281314
## Run 335 stress 0.09024781
## Run 336 stress 0.08976395
## Run 337 stress 0.08156454
## Run 338 stress 0.09149139
## Run 339 stress 0.09443182
## Run 340 stress 0.1048616
## Run 341 stress 0.08976414
## Run 342 stress 0.08156449
## Run 343 stress 0.08976397
## Run 344 stress 0.0821435
## Run 345 stress 0.08155428
## ... Procrustes: rmse 0.01792519 max resid 0.05388888
## Run 346 stress 0.08155436
## ... Procrustes: rmse 0.01794428 max resid 0.05406637
## Run 347 stress 0.08156448
## Run 348 stress 0.08152784
## ... Procrustes: rmse 0.01407006 max resid 0.0528639
## Run 349 stress 0.08106098
## ... Procrustes: rmse 0.0001031776 max resid 0.0003640154
## ... Similar to previous best
## Run 350 stress 0.08986243
## Run 351 stress 0.08156452
## Run 352 stress 0.0812627
## ... Procrustes: rmse 0.01028914 max resid 0.03729182
## Run 353 stress 0.09085944
## Run 354 stress 0.08214346
## Run 355 stress 0.08156446
## Run 356 stress 0.08214347
## Run 357 stress 0.09097331
## Run 358 stress 0.08976396
## Run 359 stress 0.08156447
## Run 360 stress 0.09432778
## Run 361 stress 0.09097331
## Run 362 stress 0.08156449
## Run 363 stress 0.09097327
## Run 364 stress 0.08155441
## ... Procrustes: rmse 0.0178992 max resid 0.05367904
## Run 365 stress 0.1096928
## Run 366 stress 0.08156448
## Run 367 stress 0.08156447
## Run 368 stress 0.08214344
## Run 369 stress 0.08155433
## ... Procrustes: rmse 0.01791793 max resid 0.05380849
## Run 370 stress 0.08126277
## ... Procrustes: rmse 0.01028442 max resid 0.03727374
## Run 371 stress 0.08106091
## ... Procrustes: rmse 3.106115e-05 max resid 0.0001118581
## ... Similar to previous best
## Run 372 stress 0.0815544
## ... Procrustes: rmse 0.01792389 max resid 0.05381274
## Run 373 stress 0.08106095
## ... Procrustes: rmse 0.0001347359 max resid 0.0004787301
## ... Similar to previous best
## Run 374 stress 0.09239146
## Run 375 stress 0.08155431
## ... Procrustes: rmse 0.0179337 max resid 0.05397298
## Run 376 stress 0.08126285
## ... Procrustes: rmse 0.01031193 max resid 0.03736177
## Run 377 stress 0.08156446
## Run 378 stress 0.09024779
## Run 379 stress 0.08155438
## ... Procrustes: rmse 0.01793889 max resid 0.05403288
## Run 380 stress 0.08155438
## ... Procrustes: rmse 0.01794023 max resid 0.05404495
## Run 381 stress 0.08214347
## Run 382 stress 0.1041305
## Run 383 stress 0.08269649
## Run 384 stress 0.0826964
## Run 385 stress 0.0902478
## Run 386 stress 0.09097332
## Run 387 stress 0.09149136
## Run 388 stress 0.08126269
## ... Procrustes: rmse 0.01028997 max resid 0.03729541
## Run 389 stress 0.0810609
## ... New best solution
## ... Procrustes: rmse 2.952754e-05 max resid 9.151892e-05
## ... Similar to previous best
## Run 390 stress 0.08986264
## Run 391 stress 0.09443248
## Run 392 stress 0.0815543
## ... Procrustes: rmse 0.01792775 max resid 0.05391432
## Run 393 stress 0.08126285
## ... Procrustes: rmse 0.01030343 max resid 0.03733105
## Run 394 stress 0.08214347
## Run 395 stress 0.08106096
## ... Procrustes: rmse 8.166197e-05 max resid 0.0002777048
## ... Similar to previous best
## Run 396 stress 0.08155445
## ... Procrustes: rmse 0.01793833 max resid 0.05407845
## Run 397 stress 0.08214347
## Run 398 stress 0.09128258
## Run 399 stress 0.09097327
## Run 400 stress 0.08986246
## Run 401 stress 0.08156448
## Run 402 stress 0.08155433
## ... Procrustes: rmse 0.01791378 max resid 0.05383079
## Run 403 stress 0.09443267
## Run 404 stress 0.08156455
## Run 405 stress 0.08156447
## Run 406 stress 0.08106094
## ... Procrustes: rmse 3.504736e-05 max resid 9.544613e-05
## ... Similar to previous best
## Run 407 stress 0.08152776
## ... Procrustes: rmse 0.01396806 max resid 0.05233624
## Run 408 stress 0.08156452
## Run 409 stress 0.1012499
## Run 410 stress 0.09118058
## Run 411 stress 0.08156446
## Run 412 stress 0.08126279
## ... Procrustes: rmse 0.01030144 max resid 0.03732623
## Run 413 stress 0.08106094
## ... Procrustes: rmse 9.984225e-05 max resid 0.000341018
## ... Similar to previous best
## Run 414 stress 0.08126274
## ... Procrustes: rmse 0.01029778 max resid 0.03731569
## Run 415 stress 0.0898624
## Run 416 stress 0.1056581
## Run 417 stress 0.0909733
## Run 418 stress 0.08156446
## Run 419 stress 0.08155436
## ... Procrustes: rmse 0.01791591 max resid 0.05380187
## Run 420 stress 0.09024779
## Run 421 stress 0.08106108
## ... Procrustes: rmse 0.0001973767 max resid 0.0006817164
## ... Similar to previous best
## Run 422 stress 0.08156446
## Run 423 stress 0.0909733
## Run 424 stress 0.08986267
## Run 425 stress 0.08986239
## Run 426 stress 0.08152767
## ... Procrustes: rmse 0.0140392 max resid 0.05272401
## Run 427 stress 0.09097327
## Run 428 stress 0.08126278
## ... Procrustes: rmse 0.0103 max resid 0.03732142
## Run 429 stress 0.1048615
## Run 430 stress 0.08156448
## Run 431 stress 0.09149152
## Run 432 stress 0.08155444
## ... Procrustes: rmse 0.01794083 max resid 0.05408368
## Run 433 stress 0.08156449
## Run 434 stress 0.08155429
## ... Procrustes: rmse 0.01793787 max resid 0.0539612
## Run 435 stress 0.1078431
## Run 436 stress 0.08986243
## Run 437 stress 0.08156452
## Run 438 stress 0.09031452
## Run 439 stress 0.08106093
## ... Procrustes: rmse 7.245395e-05 max resid 0.0002447516
## ... Similar to previous best
## Run 440 stress 0.09079871
## Run 441 stress 0.09079867
## Run 442 stress 0.08269665
## Run 443 stress 0.08155429
## ... Procrustes: rmse 0.01792772 max resid 0.05395042
## Run 444 stress 0.09443247
## Run 445 stress 0.0812627
## ... Procrustes: rmse 0.01028204 max resid 0.03726233
## Run 446 stress 0.08152789
## ... Procrustes: rmse 0.01407656 max resid 0.05291326
## Run 447 stress 0.08269664
## Run 448 stress 0.0909733
## Run 449 stress 0.09085944
## Run 450 stress 0.08152783
## ... Procrustes: rmse 0.01396606 max resid 0.05231837
## Run 451 stress 0.08106091
## ... Procrustes: rmse 4.816931e-05 max resid 0.000168182
## ... Similar to previous best
## Run 452 stress 0.1006559
## Run 453 stress 0.08156448
## Run 454 stress 0.08214345
## Run 455 stress 0.0903146
## Run 456 stress 0.09131338
## Run 457 stress 0.08214347
## Run 458 stress 0.08214345
## Run 459 stress 0.08156451
## Run 460 stress 0.08152773
## ... Procrustes: rmse 0.01404972 max resid 0.05278018
## Run 461 stress 0.08152772
## ... Procrustes: rmse 0.01405034 max resid 0.05278255
## Run 462 stress 0.0815543
## ... Procrustes: rmse 0.01791694 max resid 0.05384081
## Run 463 stress 0.09031464
## Run 464 stress 0.08152776
## ... Procrustes: rmse 0.01399089 max resid 0.05245807
## Run 465 stress 0.08106092
## ... Procrustes: rmse 6.004325e-05 max resid 0.0002088177
## ... Similar to previous best
## Run 466 stress 0.09085952
## Run 467 stress 0.08976401
## Run 468 stress 0.08106094
## ... Procrustes: rmse 8.589426e-05 max resid 0.0002910515
## ... Similar to previous best
## Run 469 stress 0.08156446
## Run 470 stress 0.08156448
## Run 471 stress 0.09128266
## Run 472 stress 0.08156451
## Run 473 stress 0.08156446
## Run 474 stress 0.09085948
## Run 475 stress 0.09024779
## Run 476 stress 0.08156447
## Run 477 stress 0.08156446
## Run 478 stress 0.0923238
## Run 479 stress 0.08269646
## Run 480 stress 0.08156451
## Run 481 stress 0.08156446
## Run 482 stress 0.08156454
## Run 483 stress 0.09031452
## Run 484 stress 0.09432768
## Run 485 stress 0.1041613
## Run 486 stress 0.1021548
## Run 487 stress 0.08155446
## ... Procrustes: rmse 0.01794037 max resid 0.05408873
## Run 488 stress 0.08152769
## ... Procrustes: rmse 0.0140405 max resid 0.05273236
## Run 489 stress 0.08269649
## Run 490 stress 0.1003811
## Run 491 stress 0.09149144
## Run 492 stress 0.09443213
## Run 493 stress 0.08155428
## ... Procrustes: rmse 0.01792497 max resid 0.05391868
## Run 494 stress 0.0815645
## Run 495 stress 0.09024781
## Run 496 stress 0.08155444
## ... Procrustes: rmse 0.01795402 max resid 0.05415866
## Run 497 stress 0.08152782
## ... Procrustes: rmse 0.0140682 max resid 0.05287163
## Run 498 stress 0.08106093
## ... Procrustes: rmse 8.744304e-05 max resid 0.0002684966
## ... Similar to previous best
## Run 499 stress 0.105532
## Run 500 stress 0.09085944
## *** Best solution repeated 10 times# Mixed and stratified lakes
pdbms_NMDS <- metaMDS(pdbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.0483367
## Run 1 stress 0.05991814
## Run 2 stress 0.05849517
## Run 3 stress 0.05991814
## Run 4 stress 0.04833679
## ... Procrustes: rmse 0.0001232015 max resid 0.0002019661
## ... Similar to previous best
## Run 5 stress 0.06236538
## Run 6 stress 0.06086881
## Run 7 stress 0.04833671
## ... Procrustes: rmse 6.582133e-05 max resid 0.0001087847
## ... Similar to previous best
## Run 8 stress 0.04875018
## ... Procrustes: rmse 0.04162559 max resid 0.1397899
## Run 9 stress 0.04833671
## ... Procrustes: rmse 2.912563e-05 max resid 4.171814e-05
## ... Similar to previous best
## Run 10 stress 0.05992871
## Run 11 stress 0.05849515
## Run 12 stress 0.0593847
## Run 13 stress 0.06758829
## Run 14 stress 0.06036745
## Run 15 stress 0.05431629
## Run 16 stress 0.04875025
## ... Procrustes: rmse 0.04151772 max resid 0.1394626
## Run 17 stress 0.0662233
## Run 18 stress 0.05116424
## Run 19 stress 0.04833672
## ... Procrustes: rmse 4.861201e-05 max resid 7.192009e-05
## ... Similar to previous best
## Run 20 stress 0.05938476
## Run 21 stress 0.05431625
## Run 22 stress 0.05938473
## Run 23 stress 0.05992879
## Run 24 stress 0.05991816
## Run 25 stress 0.05849516
## Run 26 stress 0.05863405
## Run 27 stress 0.06036743
## Run 28 stress 0.07504544
## Run 29 stress 0.05938469
## Run 30 stress 0.06758839
## Run 31 stress 0.06086846
## Run 32 stress 0.07038312
## Run 33 stress 0.0529571
## Run 34 stress 0.05938469
## Run 35 stress 0.06833884
## Run 36 stress 0.06203536
## Run 37 stress 0.05933295
## Run 38 stress 0.04833672
## ... Procrustes: rmse 4.817783e-05 max resid 7.141616e-05
## ... Similar to previous best
## Run 39 stress 0.0564381
## Run 40 stress 0.0608685
## Run 41 stress 0.06161797
## Run 42 stress 0.06036753
## Run 43 stress 0.05116418
## Run 44 stress 0.06203528
## Run 45 stress 0.05938478
## Run 46 stress 0.05933159
## Run 47 stress 0.05116415
## Run 48 stress 0.05643819
## Run 49 stress 0.04833671
## ... Procrustes: rmse 4.060474e-05 max resid 5.979774e-05
## ... Similar to previous best
## Run 50 stress 0.04833683
## ... Procrustes: rmse 0.0001563368 max resid 0.0002571755
## ... Similar to previous best
## Run 51 stress 0.0623653
## Run 52 stress 0.05849519
## Run 53 stress 0.05295713
## Run 54 stress 0.05933307
## Run 55 stress 0.06203526
## Run 56 stress 0.05748891
## Run 57 stress 0.04875021
## ... Procrustes: rmse 0.04164871 max resid 0.1398609
## Run 58 stress 0.04875022
## ... Procrustes: rmse 0.04153534 max resid 0.1395162
## Run 59 stress 0.05380038
## Run 60 stress 0.04833671
## ... Procrustes: rmse 2.865054e-05 max resid 4.347614e-05
## ... Similar to previous best
## Run 61 stress 0.07292777
## Run 62 stress 0.06236543
## Run 63 stress 0.04833672
## ... Procrustes: rmse 5.055511e-05 max resid 7.460028e-05
## ... Similar to previous best
## Run 64 stress 0.06814643
## Run 65 stress 0.05935356
## Run 66 stress 0.05933127
## Run 67 stress 0.05933157
## Run 68 stress 0.05849524
## Run 69 stress 0.06939827
## Run 70 stress 0.04833676
## ... Procrustes: rmse 0.0001286348 max resid 0.0002180247
## ... Similar to previous best
## Run 71 stress 0.0483367
## ... Procrustes: rmse 1.859779e-05 max resid 3.389636e-05
## ... Similar to previous best
## Run 72 stress 0.05380036
## Run 73 stress 0.06203526
## Run 74 stress 0.05933306
## Run 75 stress 0.06041478
## Run 76 stress 0.0538004
## Run 77 stress 0.05849526
## Run 78 stress 0.05748885
## Run 79 stress 0.04833671
## ... Procrustes: rmse 3.793115e-05 max resid 5.630118e-05
## ... Similar to previous best
## Run 80 stress 0.06939828
## Run 81 stress 0.04875023
## ... Procrustes: rmse 0.0415271 max resid 0.139491
## Run 82 stress 0.06617401
## Run 83 stress 0.0593847
## Run 84 stress 0.07206107
## Run 85 stress 0.059333
## Run 86 stress 0.0483367
## ... New best solution
## ... Procrustes: rmse 8.000854e-06 max resid 1.512167e-05
## ... Similar to previous best
## Run 87 stress 0.04833677
## ... Procrustes: rmse 0.0001301415 max resid 0.0002242138
## ... Similar to previous best
## Run 88 stress 0.06593278
## Run 89 stress 0.06161806
## Run 90 stress 0.06786008
## Run 91 stress 0.0574889
## Run 92 stress 0.06624134
## Run 93 stress 0.0487502
## ... Procrustes: rmse 0.0416078 max resid 0.1397352
## Run 94 stress 0.06036744
## Run 95 stress 0.04833677
## ... Procrustes: rmse 0.000121002 max resid 0.0002273582
## ... Similar to previous best
## Run 96 stress 0.07020888
## Run 97 stress 0.05295711
## Run 98 stress 0.04875017
## ... Procrustes: rmse 0.04159223 max resid 0.1396885
## Run 99 stress 0.05992867
## Run 100 stress 0.05295712
## Run 101 stress 0.05849521
## Run 102 stress 0.0483367
## ... Procrustes: rmse 2.632356e-05 max resid 4.214278e-05
## ... Similar to previous best
## Run 103 stress 0.05938469
## Run 104 stress 0.06092386
## Run 105 stress 0.06092386
## Run 106 stress 0.0609239
## Run 107 stress 0.04875023
## ... Procrustes: rmse 0.04152341 max resid 0.1394787
## Run 108 stress 0.06614136
## Run 109 stress 0.06036754
## Run 110 stress 0.06086859
## Run 111 stress 0.06092391
## Run 112 stress 0.04833672
## ... Procrustes: rmse 4.150508e-05 max resid 6.896386e-05
## ... Similar to previous best
## Run 113 stress 0.05431632
## Run 114 stress 0.0529571
## Run 115 stress 0.05933294
## Run 116 stress 0.05295716
## Run 117 stress 0.05863407
## Run 118 stress 0.05992866
## Run 119 stress 0.05380047
## Run 120 stress 0.05116416
## Run 121 stress 0.0661414
## Run 122 stress 0.05748879
## Run 123 stress 0.07277538
## Run 124 stress 0.0529572
## Run 125 stress 0.0584952
## Run 126 stress 0.05748883
## Run 127 stress 0.05431633
## Run 128 stress 0.05992866
## Run 129 stress 0.0483367
## ... Procrustes: rmse 1.118378e-05 max resid 2.053039e-05
## ... Similar to previous best
## Run 130 stress 0.05643812
## Run 131 stress 0.06086857
## Run 132 stress 0.0483367
## ... Procrustes: rmse 3.091357e-05 max resid 4.654194e-05
## ... Similar to previous best
## Run 133 stress 0.06599285
## Run 134 stress 0.0584953
## Run 135 stress 0.05346104
## Run 136 stress 0.05863409
## Run 137 stress 0.05295713
## Run 138 stress 0.05748887
## Run 139 stress 0.04875023
## ... Procrustes: rmse 0.04152847 max resid 0.1394946
## Run 140 stress 0.06911406
## Run 141 stress 0.05295718
## Run 142 stress 0.05116416
## Run 143 stress 0.05992869
## Run 144 stress 0.05748884
## Run 145 stress 0.06161799
## Run 146 stress 0.06170845
## Run 147 stress 0.06236531
## Run 148 stress 0.04833672
## ... Procrustes: rmse 5.54443e-05 max resid 8.136201e-05
## ... Similar to previous best
## Run 149 stress 0.06831109
## Run 150 stress 0.06203534
## Run 151 stress 0.05748887
## Run 152 stress 0.0529572
## Run 153 stress 0.04875027
## ... Procrustes: rmse 0.04150974 max resid 0.139437
## Run 154 stress 0.05748881
## Run 155 stress 0.05431626
## Run 156 stress 0.05938472
## Run 157 stress 0.04875018
## ... Procrustes: rmse 0.04155507 max resid 0.1395756
## Run 158 stress 0.05295719
## Run 159 stress 0.04875024
## ... Procrustes: rmse 0.04152576 max resid 0.1394847
## Run 160 stress 0.0483367
## ... Procrustes: rmse 2.168602e-05 max resid 3.376134e-05
## ... Similar to previous best
## Run 161 stress 0.05295713
## Run 162 stress 0.07117138
## Run 163 stress 0.04833674
## ... Procrustes: rmse 9.004072e-05 max resid 0.0001480343
## ... Similar to previous best
## Run 164 stress 0.05748885
## Run 165 stress 0.04875021
## ... Procrustes: rmse 0.04164724 max resid 0.1398554
## Run 166 stress 0.05933167
## Run 167 stress 0.06972016
## Run 168 stress 0.06170845
## Run 169 stress 0.05748879
## Run 170 stress 0.04833672
## ... Procrustes: rmse 5.875122e-05 max resid 8.674094e-05
## ... Similar to previous best
## Run 171 stress 0.04875018
## ... Procrustes: rmse 0.04162478 max resid 0.1397871
## Run 172 stress 0.06041486
## Run 173 stress 0.0604148
## Run 174 stress 0.05938469
## Run 175 stress 0.05295715
## Run 176 stress 0.04875019
## ... Procrustes: rmse 0.04155332 max resid 0.1395698
## Run 177 stress 0.06911411
## Run 178 stress 0.06036756
## Run 179 stress 0.06614131
## Run 180 stress 0.05863399
## Run 181 stress 0.05748878
## Run 182 stress 0.04875032
## ... Procrustes: rmse 0.04168963 max resid 0.1399828
## Run 183 stress 0.05116422
## Run 184 stress 0.04875016
## ... Procrustes: rmse 0.04157687 max resid 0.1396418
## Run 185 stress 0.06161797
## Run 186 stress 0.05380046
## Run 187 stress 0.05849517
## Run 188 stress 0.06850994
## Run 189 stress 0.06036746
## Run 190 stress 0.06161793
## Run 191 stress 0.0483367
## ... Procrustes: rmse 9.934626e-06 max resid 1.597256e-05
## ... Similar to previous best
## Run 192 stress 0.05992876
## Run 193 stress 0.0659331
## Run 194 stress 0.05295716
## Run 195 stress 0.05938469
## Run 196 stress 0.04833672
## ... Procrustes: rmse 7.90561e-05 max resid 0.0001321859
## ... Similar to previous best
## Run 197 stress 0.06041479
## Run 198 stress 0.04875025
## ... Procrustes: rmse 0.04151617 max resid 0.1394568
## Run 199 stress 0.04875021
## ... Procrustes: rmse 0.04164156 max resid 0.1398384
## Run 200 stress 0.04833672
## ... Procrustes: rmse 5.509653e-05 max resid 8.126176e-05
## ... Similar to previous best
## Run 201 stress 0.06161816
## Run 202 stress 0.06236541
## Run 203 stress 0.06092392
## Run 204 stress 0.05431628
## Run 205 stress 0.07114121
## Run 206 stress 0.06851009
## Run 207 stress 0.05849523
## Run 208 stress 0.05295723
## Run 209 stress 0.05295721
## Run 210 stress 0.04875022
## ... Procrustes: rmse 0.04154863 max resid 0.139555
## Run 211 stress 0.05863398
## Run 212 stress 0.06086873
## Run 213 stress 0.3501116
## Run 214 stress 0.04833671
## ... Procrustes: rmse 4.799942e-05 max resid 7.071672e-05
## ... Similar to previous best
## Run 215 stress 0.06092386
## Run 216 stress 0.06850997
## Run 217 stress 0.05992864
## Run 218 stress 0.06036752
## Run 219 stress 0.04833671
## ... Procrustes: rmse 6.227252e-05 max resid 0.0001031799
## ... Similar to previous best
## Run 220 stress 0.04833671
## ... Procrustes: rmse 4.411906e-05 max resid 7.136166e-05
## ... Similar to previous best
## Run 221 stress 0.05933202
## Run 222 stress 0.05346083
## Run 223 stress 0.061618
## Run 224 stress 0.06203524
## Run 225 stress 0.06911414
## Run 226 stress 0.05295711
## Run 227 stress 0.05933297
## Run 228 stress 0.06161789
## Run 229 stress 0.0593847
## Run 230 stress 0.04833671
## ... Procrustes: rmse 3.345726e-05 max resid 4.940493e-05
## ... Similar to previous best
## Run 231 stress 0.04833672
## ... Procrustes: rmse 7.002024e-05 max resid 0.0001183931
## ... Similar to previous best
## Run 232 stress 0.05992868
## Run 233 stress 0.04875017
## ... Procrustes: rmse 0.0416108 max resid 0.1397446
## Run 234 stress 0.05346092
## Run 235 stress 0.05380033
## Run 236 stress 0.06203521
## Run 237 stress 0.0574888
## Run 238 stress 0.05933132
## Run 239 stress 0.06622332
## Run 240 stress 0.04875022
## ... Procrustes: rmse 0.04153236 max resid 0.1395067
## Run 241 stress 0.05748877
## Run 242 stress 0.0593847
## Run 243 stress 0.0534608
## Run 244 stress 0.06317336
## Run 245 stress 0.05933182
## Run 246 stress 0.05748882
## Run 247 stress 0.04833671
## ... Procrustes: rmse 4.95095e-05 max resid 8.652935e-05
## ... Similar to previous best
## Run 248 stress 0.04875023
## ... Procrustes: rmse 0.0416517 max resid 0.1398684
## Run 249 stress 0.05431626
## Run 250 stress 0.04833674
## ... Procrustes: rmse 0.0001045268 max resid 0.0001785565
## ... Similar to previous best
## Run 251 stress 0.06036753
## Run 252 stress 0.06613486
## Run 253 stress 0.06911401
## Run 254 stress 0.0574888
## Run 255 stress 0.05863395
## Run 256 stress 0.04833676
## ... Procrustes: rmse 0.0001176368 max resid 0.0001715438
## ... Similar to previous best
## Run 257 stress 0.04875022
## ... Procrustes: rmse 0.04152629 max resid 0.139488
## Run 258 stress 0.07206074
## Run 259 stress 0.05992865
## Run 260 stress 0.06971987
## Run 261 stress 0.05938475
## Run 262 stress 0.05991819
## Run 263 stress 0.04875019
## ... Procrustes: rmse 0.04156027 max resid 0.1395918
## Run 264 stress 0.0511642
## Run 265 stress 0.05863395
## Run 266 stress 0.06833865
## Run 267 stress 0.04875024
## ... Procrustes: rmse 0.04154855 max resid 0.1395522
## Run 268 stress 0.06614162
## Run 269 stress 0.06831101
## Run 270 stress 0.04833677
## ... Procrustes: rmse 0.0001341402 max resid 0.0002330986
## ... Similar to previous best
## Run 271 stress 0.06036751
## Run 272 stress 0.04833672
## ... Procrustes: rmse 5.250015e-05 max resid 7.824505e-05
## ... Similar to previous best
## Run 273 stress 0.07752598
## Run 274 stress 0.05346079
## Run 275 stress 0.05431624
## Run 276 stress 0.04833675
## ... Procrustes: rmse 9.547153e-05 max resid 0.0001568345
## ... Similar to previous best
## Run 277 stress 0.05991813
## Run 278 stress 0.0487502
## ... Procrustes: rmse 0.04154444 max resid 0.1395427
## Run 279 stress 0.06092387
## Run 280 stress 0.05933296
## Run 281 stress 0.0487503
## ... Procrustes: rmse 0.04149621 max resid 0.1393962
## Run 282 stress 0.06041497
## Run 283 stress 0.04875023
## ... Procrustes: rmse 0.04154333 max resid 0.1395388
## Run 284 stress 0.04833677
## ... Procrustes: rmse 0.0001168364 max resid 0.0001925159
## ... Similar to previous best
## Run 285 stress 0.06036745
## Run 286 stress 0.06036749
## Run 287 stress 0.04833671
## ... Procrustes: rmse 5.005283e-05 max resid 7.406056e-05
## ... Similar to previous best
## Run 288 stress 0.06203528
## Run 289 stress 0.04875025
## ... Procrustes: rmse 0.04166045 max resid 0.1398951
## Run 290 stress 0.04875024
## ... Procrustes: rmse 0.04151666 max resid 0.1394586
## Run 291 stress 0.06317314
## Run 292 stress 0.05116421
## Run 293 stress 0.05380058
## Run 294 stress 0.0483367
## ... Procrustes: rmse 2.031026e-05 max resid 3.127263e-05
## ... Similar to previous best
## Run 295 stress 0.04875017
## ... Procrustes: rmse 0.04161059 max resid 0.1397442
## Run 296 stress 0.0604148
## Run 297 stress 0.05933313
## Run 298 stress 0.06236532
## Run 299 stress 0.05116418
## Run 300 stress 0.05933302
## Run 301 stress 0.0543163
## Run 302 stress 0.061618
## Run 303 stress 0.05849515
## Run 304 stress 0.06622339
## Run 305 stress 0.04833672
## ... Procrustes: rmse 7.476064e-05 max resid 0.0001154703
## ... Similar to previous best
## Run 306 stress 0.06972019
## Run 307 stress 0.04833675
## ... Procrustes: rmse 0.0001032008 max resid 0.0001654722
## ... Similar to previous best
## Run 308 stress 0.05935226
## Run 309 stress 0.04833671
## ... Procrustes: rmse 3.883736e-05 max resid 7.104828e-05
## ... Similar to previous best
## Run 310 stress 0.06622333
## Run 311 stress 0.05295714
## Run 312 stress 0.06624126
## Run 313 stress 0.04833671
## ... Procrustes: rmse 3.40053e-05 max resid 5.149287e-05
## ... Similar to previous best
## Run 314 stress 0.04833671
## ... Procrustes: rmse 4.428207e-05 max resid 6.751832e-05
## ... Similar to previous best
## Run 315 stress 0.04833678
## ... Procrustes: rmse 0.0001222584 max resid 0.0002012976
## ... Similar to previous best
## Run 316 stress 0.04833672
## ... Procrustes: rmse 6.971426e-05 max resid 0.0001158102
## ... Similar to previous best
## Run 317 stress 0.06086857
## Run 318 stress 0.05849526
## Run 319 stress 0.05935408
## Run 320 stress 0.04875023
## ... Procrustes: rmse 0.04153439 max resid 0.1395137
## Run 321 stress 0.05346081
## Run 322 stress 0.06614156
## Run 323 stress 0.04875021
## ... Procrustes: rmse 0.04153679 max resid 0.1395195
## Run 324 stress 0.04875021
## ... Procrustes: rmse 0.04153506 max resid 0.1395148
## Run 325 stress 0.0487502
## ... Procrustes: rmse 0.04154108 max resid 0.1395331
## Run 326 stress 0.05431636
## Run 327 stress 0.05933307
## Run 328 stress 0.05380039
## Run 329 stress 0.04875028
## ... Procrustes: rmse 0.04150125 max resid 0.1394116
## Run 330 stress 0.05380038
## Run 331 stress 0.05116417
## Run 332 stress 0.05748881
## Run 333 stress 0.3546478
## Run 334 stress 0.06786018
## Run 335 stress 0.04875025
## ... Procrustes: rmse 0.04158041 max resid 0.139652
## Run 336 stress 0.06850972
## Run 337 stress 0.05863396
## Run 338 stress 0.05295717
## Run 339 stress 0.04875019
## ... Procrustes: rmse 0.04162719 max resid 0.139795
## Run 340 stress 0.05933301
## Run 341 stress 0.04875017
## ... Procrustes: rmse 0.04157285 max resid 0.1396291
## Run 342 stress 0.05295711
## Run 343 stress 0.05992864
## Run 344 stress 0.0483367
## ... Procrustes: rmse 2.173992e-05 max resid 3.706221e-05
## ... Similar to previous best
## Run 345 stress 0.05863392
## Run 346 stress 0.05992871
## Run 347 stress 0.05933294
## Run 348 stress 0.04833671
## ... Procrustes: rmse 5.419325e-05 max resid 9.637691e-05
## ... Similar to previous best
## Run 349 stress 0.0483367
## ... Procrustes: rmse 2.497166e-05 max resid 3.993708e-05
## ... Similar to previous best
## Run 350 stress 0.06086866
## Run 351 stress 0.04875023
## ... Procrustes: rmse 0.04153914 max resid 0.1395262
## Run 352 stress 0.05295712
## Run 353 stress 0.06851021
## Run 354 stress 0.0483367
## ... Procrustes: rmse 2.637384e-05 max resid 4.339583e-05
## ... Similar to previous best
## Run 355 stress 0.06758832
## Run 356 stress 0.06161816
## Run 357 stress 0.06878409
## Run 358 stress 0.05933136
## Run 359 stress 0.07023454
## Run 360 stress 0.05863407
## Run 361 stress 0.05295712
## Run 362 stress 0.0483367
## ... Procrustes: rmse 1.116473e-05 max resid 2.057891e-05
## ... Similar to previous best
## Run 363 stress 0.06170845
## Run 364 stress 0.04875023
## ... Procrustes: rmse 0.0416583 max resid 0.1398886
## Run 365 stress 0.04875017
## ... Procrustes: rmse 0.04156409 max resid 0.1396027
## Run 366 stress 0.04875021
## ... Procrustes: rmse 0.04153395 max resid 0.1395115
## Run 367 stress 0.05991817
## Run 368 stress 0.06092387
## Run 369 stress 0.05346099
## Run 370 stress 0.05643831
## Run 371 stress 0.05748877
## Run 372 stress 0.06036753
## Run 373 stress 0.04833672
## ... Procrustes: rmse 7.687987e-05 max resid 0.0001159333
## ... Similar to previous best
## Run 374 stress 0.05380038
## Run 375 stress 0.06161793
## Run 376 stress 0.05116416
## Run 377 stress 0.05849515
## Run 378 stress 0.06092391
## Run 379 stress 0.05295712
## Run 380 stress 0.05380069
## Run 381 stress 0.04875026
## ... Procrustes: rmse 0.04151114 max resid 0.139442
## Run 382 stress 0.06723851
## Run 383 stress 0.058634
## Run 384 stress 0.05748878
## Run 385 stress 0.05346094
## Run 386 stress 0.05295717
## Run 387 stress 0.05643816
## Run 388 stress 0.05938474
## Run 389 stress 0.06758823
## Run 390 stress 0.0593847
## Run 391 stress 0.059333
## Run 392 stress 0.06614144
## Run 393 stress 0.05380036
## Run 394 stress 0.0483367
## ... Procrustes: rmse 1.494905e-05 max resid 2.294416e-05
## ... Similar to previous best
## Run 395 stress 0.0593317
## Run 396 stress 0.05295715
## Run 397 stress 0.0543163
## Run 398 stress 0.0487502
## ... Procrustes: rmse 0.04154213 max resid 0.139536
## Run 399 stress 0.05992867
## Run 400 stress 0.0593316
## Run 401 stress 0.0487502
## ... Procrustes: rmse 0.04163701 max resid 0.1398245
## Run 402 stress 0.04875024
## ... Procrustes: rmse 0.0416579 max resid 0.139888
## Run 403 stress 0.05431625
## Run 404 stress 0.05748882
## Run 405 stress 0.05849525
## Run 406 stress 0.0483367
## ... Procrustes: rmse 2.355262e-05 max resid 3.628361e-05
## ... Similar to previous best
## Run 407 stress 0.06236538
## Run 408 stress 0.07504545
## Run 409 stress 0.0620353
## Run 410 stress 0.0593848
## Run 411 stress 0.05380068
## Run 412 stress 0.05431628
## Run 413 stress 0.069114
## Run 414 stress 0.05380039
## Run 415 stress 0.04833676
## ... Procrustes: rmse 0.0001214984 max resid 0.0002001782
## ... Similar to previous best
## Run 416 stress 0.0593847
## Run 417 stress 0.06911375
## Run 418 stress 0.04833671
## ... Procrustes: rmse 5.826127e-05 max resid 9.581048e-05
## ... Similar to previous best
## Run 419 stress 0.0483367
## ... New best solution
## ... Procrustes: rmse 1.06388e-05 max resid 2.125435e-05
## ... Similar to previous best
## Run 420 stress 0.05863393
## Run 421 stress 0.04875026
## ... Procrustes: rmse 0.04151065 max resid 0.1394397
## Run 422 stress 0.05346093
## Run 423 stress 0.04875028
## ... Procrustes: rmse 0.04149623 max resid 0.1393963
## Run 424 stress 0.05991814
## Run 425 stress 0.06161805
## Run 426 stress 0.06203521
## Run 427 stress 0.06723855
## Run 428 stress 0.06203527
## Run 429 stress 0.07277499
## Run 430 stress 0.04833676
## ... Procrustes: rmse 0.0001119468 max resid 0.0001804534
## ... Similar to previous best
## Run 431 stress 0.05380034
## Run 432 stress 0.05992869
## Run 433 stress 0.06041502
## Run 434 stress 0.06614161
## Run 435 stress 0.05849517
## Run 436 stress 0.04833676
## ... Procrustes: rmse 0.0001094751 max resid 0.0001863402
## ... Similar to previous best
## Run 437 stress 0.04875021
## ... Procrustes: rmse 0.04156367 max resid 0.1396032
## Run 438 stress 0.04833679
## ... Procrustes: rmse 0.0001367291 max resid 0.0002383103
## ... Similar to previous best
## Run 439 stress 0.05748886
## Run 440 stress 0.06161803
## Run 441 stress 0.06036749
## Run 442 stress 0.05295712
## Run 443 stress 0.05992871
## Run 444 stress 0.05863398
## Run 445 stress 0.06092387
## Run 446 stress 0.06161811
## Run 447 stress 0.0483367
## ... Procrustes: rmse 1.368038e-05 max resid 2.708939e-05
## ... Similar to previous best
## Run 448 stress 0.05346091
## Run 449 stress 0.05863413
## Run 450 stress 0.05938471
## Run 451 stress 0.0483367
## ... Procrustes: rmse 2.32062e-05 max resid 4.419737e-05
## ... Similar to previous best
## Run 452 stress 0.0483367
## ... Procrustes: rmse 2.486804e-05 max resid 4.542681e-05
## ... Similar to previous best
## Run 453 stress 0.05295711
## Run 454 stress 0.06086865
## Run 455 stress 0.06851014
## Run 456 stress 0.04875021
## ... Procrustes: rmse 0.04152826 max resid 0.1394938
## Run 457 stress 0.06831098
## Run 458 stress 0.06203523
## Run 459 stress 0.04833672
## ... Procrustes: rmse 7.240129e-05 max resid 0.0001192429
## ... Similar to previous best
## Run 460 stress 0.04875024
## ... Procrustes: rmse 0.04152466 max resid 0.1394825
## Run 461 stress 0.05938477
## Run 462 stress 0.04875019
## ... Procrustes: rmse 0.04153724 max resid 0.1395214
## Run 463 stress 0.06814641
## Run 464 stress 0.0608687
## Run 465 stress 0.05380048
## Run 466 stress 0.04875019
## ... Procrustes: rmse 0.04155278 max resid 0.1395699
## Run 467 stress 0.0483367
## ... Procrustes: rmse 2.633129e-05 max resid 5.037705e-05
## ... Similar to previous best
## Run 468 stress 0.05643806
## Run 469 stress 0.07061516
## Run 470 stress 0.0586341
## Run 471 stress 0.05748882
## Run 472 stress 0.05748885
## Run 473 stress 0.06614154
## Run 474 stress 0.05849523
## Run 475 stress 0.05935331
## Run 476 stress 0.05748891
## Run 477 stress 0.04875022
## ... Procrustes: rmse 0.04152365 max resid 0.1394798
## Run 478 stress 0.05863397
## Run 479 stress 0.05992868
## Run 480 stress 0.07206077
## Run 481 stress 0.04833676
## ... Procrustes: rmse 0.0001104941 max resid 0.0001864571
## ... Similar to previous best
## Run 482 stress 0.06317338
## Run 483 stress 0.06041487
## Run 484 stress 0.04875021
## ... Procrustes: rmse 0.04153372 max resid 0.1395095
## Run 485 stress 0.05643821
## Run 486 stress 0.04875017
## ... Procrustes: rmse 0.04156378 max resid 0.139602
## Run 487 stress 0.05933318
## Run 488 stress 0.06036746
## Run 489 stress 0.053461
## Run 490 stress 0.05643803
## Run 491 stress 0.06911389
## Run 492 stress 0.04875019
## ... Procrustes: rmse 0.04154568 max resid 0.1395468
## Run 493 stress 0.05992872
## Run 494 stress 0.06092386
## Run 495 stress 0.07023467
## Run 496 stress 0.0483367
## ... Procrustes: rmse 3.323284e-05 max resid 5.786625e-05
## ... Similar to previous best
## Run 497 stress 0.04875016
## ... Procrustes: rmse 0.04157699 max resid 0.139642
## Run 498 stress 0.04833676
## ... Procrustes: rmse 0.0001137463 max resid 0.0002110728
## ... Similar to previous best
## Run 499 stress 0.0593313
## Run 500 stress 0.04833675
## ... Procrustes: rmse 0.0001025686 max resid 0.000163618
## ... Similar to previous best
## *** Best solution repeated 13 times# Ocean sites and mixed lakes
pdbom_NMDS <- metaMDS(pdbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.09428658
## Run 1 stress 0.1279813
## Run 2 stress 0.09428658
## ... New best solution
## ... Procrustes: rmse 5.34521e-06 max resid 9.572818e-06
## ... Similar to previous best
## Run 3 stress 0.09428658
## ... Procrustes: rmse 4.323313e-06 max resid 8.709788e-06
## ... Similar to previous best
## Run 4 stress 0.1279813
## Run 5 stress 0.123562
## Run 6 stress 0.1279813
## Run 7 stress 0.123562
## Run 8 stress 0.09428658
## ... Procrustes: rmse 7.934404e-07 max resid 1.750323e-06
## ... Similar to previous best
## Run 9 stress 0.09428658
## ... New best solution
## ... Procrustes: rmse 2.836314e-06 max resid 5.506259e-06
## ... Similar to previous best
## Run 10 stress 0.1279813
## Run 11 stress 0.09428658
## ... Procrustes: rmse 2.596761e-06 max resid 4.946323e-06
## ... Similar to previous best
## Run 12 stress 0.123562
## Run 13 stress 0.09428658
## ... Procrustes: rmse 1.386868e-06 max resid 2.730783e-06
## ... Similar to previous best
## Run 14 stress 0.09428658
## ... Procrustes: rmse 4.601091e-06 max resid 8.718387e-06
## ... Similar to previous best
## Run 15 stress 0.09428658
## ... New best solution
## ... Procrustes: rmse 1.49736e-06 max resid 2.814336e-06
## ... Similar to previous best
## Run 16 stress 0.1382001
## Run 17 stress 0.1235621
## Run 18 stress 0.123562
## Run 19 stress 0.1490896
## Run 20 stress 0.09428658
## ... Procrustes: rmse 4.289574e-06 max resid 6.812291e-06
## ... Similar to previous best
## Run 21 stress 0.09428658
## ... Procrustes: rmse 2.108671e-06 max resid 3.707469e-06
## ... Similar to previous best
## Run 22 stress 0.123562
## Run 23 stress 0.09428658
## ... Procrustes: rmse 3.922401e-06 max resid 6.77067e-06
## ... Similar to previous best
## Run 24 stress 0.09428658
## ... Procrustes: rmse 1.647293e-06 max resid 2.632561e-06
## ... Similar to previous best
## Run 25 stress 0.1279813
## Run 26 stress 0.09428658
## ... Procrustes: rmse 2.1456e-06 max resid 4.842355e-06
## ... Similar to previous best
## Run 27 stress 0.1490896
## Run 28 stress 0.123562
## Run 29 stress 0.1380679
## Run 30 stress 0.09428658
## ... Procrustes: rmse 1.132865e-06 max resid 2.17425e-06
## ... Similar to previous best
## Run 31 stress 0.09428658
## ... Procrustes: rmse 5.884853e-06 max resid 1.253524e-05
## ... Similar to previous best
## Run 32 stress 0.09428658
## ... Procrustes: rmse 2.702668e-06 max resid 5.81869e-06
## ... Similar to previous best
## Run 33 stress 0.123562
## Run 34 stress 0.09428658
## ... Procrustes: rmse 2.368737e-06 max resid 4.288622e-06
## ... Similar to previous best
## Run 35 stress 0.123562
## Run 36 stress 0.1279813
## Run 37 stress 0.1279813
## Run 38 stress 0.09428658
## ... Procrustes: rmse 1.462015e-06 max resid 2.273083e-06
## ... Similar to previous best
## Run 39 stress 0.1279813
## Run 40 stress 0.1279813
## Run 41 stress 0.123562
## Run 42 stress 0.09428658
## ... Procrustes: rmse 1.891621e-06 max resid 5.235194e-06
## ... Similar to previous best
## Run 43 stress 0.09428658
## ... Procrustes: rmse 8.297953e-07 max resid 1.649106e-06
## ... Similar to previous best
## Run 44 stress 0.09428658
## ... Procrustes: rmse 2.327768e-06 max resid 5.097945e-06
## ... Similar to previous best
## Run 45 stress 0.123562
## Run 46 stress 0.1279813
## Run 47 stress 0.09428658
## ... Procrustes: rmse 1.213303e-06 max resid 2.024131e-06
## ... Similar to previous best
## Run 48 stress 0.1279813
## Run 49 stress 0.1279813
## Run 50 stress 0.09428658
## ... Procrustes: rmse 1.188189e-06 max resid 2.387045e-06
## ... Similar to previous best
## Run 51 stress 0.09428658
## ... Procrustes: rmse 6.557032e-07 max resid 1.261992e-06
## ... Similar to previous best
## Run 52 stress 0.123562
## Run 53 stress 0.123562
## Run 54 stress 0.123562
## Run 55 stress 0.09428658
## ... Procrustes: rmse 4.177748e-06 max resid 7.811774e-06
## ... Similar to previous best
## Run 56 stress 0.09428658
## ... Procrustes: rmse 1.051862e-06 max resid 1.530975e-06
## ... Similar to previous best
## Run 57 stress 0.123562
## Run 58 stress 0.09428658
## ... Procrustes: rmse 7.532998e-07 max resid 1.233962e-06
## ... Similar to previous best
## Run 59 stress 0.1279813
## Run 60 stress 0.123562
## Run 61 stress 0.09428658
## ... Procrustes: rmse 8.811092e-07 max resid 1.389995e-06
## ... Similar to previous best
## Run 62 stress 0.123562
## Run 63 stress 0.123562
## Run 64 stress 0.3222481
## Run 65 stress 0.123562
## Run 66 stress 0.09428658
## ... Procrustes: rmse 1.313248e-06 max resid 2.682227e-06
## ... Similar to previous best
## Run 67 stress 0.123562
## Run 68 stress 0.1279813
## Run 69 stress 0.09428658
## ... Procrustes: rmse 2.762165e-06 max resid 4.336045e-06
## ... Similar to previous best
## Run 70 stress 0.09428658
## ... Procrustes: rmse 2.185611e-06 max resid 5.327423e-06
## ... Similar to previous best
## Run 71 stress 0.123562
## Run 72 stress 0.3100071
## Run 73 stress 0.123562
## Run 74 stress 0.1235621
## Run 75 stress 0.123562
## Run 76 stress 0.1279813
## Run 77 stress 0.1279813
## Run 78 stress 0.1279813
## Run 79 stress 0.1235621
## Run 80 stress 0.1235621
## Run 81 stress 0.1279813
## Run 82 stress 0.1279813
## Run 83 stress 0.1279813
## Run 84 stress 0.09428658
## ... Procrustes: rmse 1.690811e-06 max resid 2.855544e-06
## ... Similar to previous best
## Run 85 stress 0.1279813
## Run 86 stress 0.09428658
## ... Procrustes: rmse 1.868916e-06 max resid 4.856566e-06
## ... Similar to previous best
## Run 87 stress 0.09428658
## ... Procrustes: rmse 3.867259e-06 max resid 6.054431e-06
## ... Similar to previous best
## Run 88 stress 0.09428658
## ... Procrustes: rmse 4.844845e-06 max resid 8.826676e-06
## ... Similar to previous best
## Run 89 stress 0.09428658
## ... Procrustes: rmse 3.136582e-06 max resid 5.478433e-06
## ... Similar to previous best
## Run 90 stress 0.1235621
## Run 91 stress 0.09428658
## ... Procrustes: rmse 1.716044e-06 max resid 3.115966e-06
## ... Similar to previous best
## Run 92 stress 0.1235621
## Run 93 stress 0.09428658
## ... Procrustes: rmse 6.206921e-06 max resid 1.069836e-05
## ... Similar to previous best
## Run 94 stress 0.09428658
## ... Procrustes: rmse 9.698267e-07 max resid 1.657887e-06
## ... Similar to previous best
## Run 95 stress 0.1279813
## Run 96 stress 0.1279813
## Run 97 stress 0.09428658
## ... Procrustes: rmse 2.68903e-06 max resid 5.447326e-06
## ... Similar to previous best
## Run 98 stress 0.09428658
## ... Procrustes: rmse 6.168653e-06 max resid 1.122423e-05
## ... Similar to previous best
## Run 99 stress 0.09428658
## ... Procrustes: rmse 4.596737e-06 max resid 9.706454e-06
## ... Similar to previous best
## Run 100 stress 0.123562
## Run 101 stress 0.1235621
## Run 102 stress 0.09428658
## ... Procrustes: rmse 1.951032e-06 max resid 3.416979e-06
## ... Similar to previous best
## Run 103 stress 0.1279813
## Run 104 stress 0.1279813
## Run 105 stress 0.09428658
## ... Procrustes: rmse 3.089614e-06 max resid 5.487611e-06
## ... Similar to previous best
## Run 106 stress 0.09428658
## ... Procrustes: rmse 1.903149e-06 max resid 3.534002e-06
## ... Similar to previous best
## Run 107 stress 0.09428658
## ... Procrustes: rmse 5.278073e-07 max resid 9.704987e-07
## ... Similar to previous best
## Run 108 stress 0.1279813
## Run 109 stress 0.09428658
## ... Procrustes: rmse 3.534133e-06 max resid 7.014872e-06
## ... Similar to previous best
## Run 110 stress 0.09428658
## ... Procrustes: rmse 4.46557e-07 max resid 9.497687e-07
## ... Similar to previous best
## Run 111 stress 0.1279813
## Run 112 stress 0.1279813
## Run 113 stress 0.3532051
## Run 114 stress 0.1279813
## Run 115 stress 0.123562
## Run 116 stress 0.09428658
## ... Procrustes: rmse 2.032596e-06 max resid 3.841896e-06
## ... Similar to previous best
## Run 117 stress 0.1279813
## Run 118 stress 0.09428658
## ... Procrustes: rmse 5.807935e-06 max resid 1.082019e-05
## ... Similar to previous best
## Run 119 stress 0.1279813
## Run 120 stress 0.09428658
## ... Procrustes: rmse 6.448947e-06 max resid 1.008574e-05
## ... Similar to previous best
## Run 121 stress 0.353205
## Run 122 stress 0.09428658
## ... Procrustes: rmse 3.618325e-06 max resid 5.703562e-06
## ... Similar to previous best
## Run 123 stress 0.1279813
## Run 124 stress 0.09428658
## ... Procrustes: rmse 2.000909e-06 max resid 3.523715e-06
## ... Similar to previous best
## Run 125 stress 0.09428658
## ... Procrustes: rmse 1.563612e-06 max resid 3.524042e-06
## ... Similar to previous best
## Run 126 stress 0.1279813
## Run 127 stress 0.123562
## Run 128 stress 0.1279813
## Run 129 stress 0.09428658
## ... Procrustes: rmse 2.701372e-06 max resid 5.813459e-06
## ... Similar to previous best
## Run 130 stress 0.09428658
## ... Procrustes: rmse 2.127525e-06 max resid 4.018342e-06
## ... Similar to previous best
## Run 131 stress 0.09428658
## ... Procrustes: rmse 7.548853e-07 max resid 1.711008e-06
## ... Similar to previous best
## Run 132 stress 0.123562
## Run 133 stress 0.09428658
## ... Procrustes: rmse 9.1446e-07 max resid 1.310098e-06
## ... Similar to previous best
## Run 134 stress 0.1279813
## Run 135 stress 0.09428658
## ... Procrustes: rmse 1.354285e-06 max resid 2.601736e-06
## ... Similar to previous best
## Run 136 stress 0.09428658
## ... Procrustes: rmse 1.772944e-06 max resid 3.455665e-06
## ... Similar to previous best
## Run 137 stress 0.1279813
## Run 138 stress 0.09428658
## ... Procrustes: rmse 1.917147e-06 max resid 2.92146e-06
## ... Similar to previous best
## Run 139 stress 0.123562
## Run 140 stress 0.1235621
## Run 141 stress 0.1279813
## Run 142 stress 0.09428658
## ... Procrustes: rmse 1.26792e-06 max resid 2.163597e-06
## ... Similar to previous best
## Run 143 stress 0.123562
## Run 144 stress 0.1279813
## Run 145 stress 0.1279813
## Run 146 stress 0.09428658
## ... Procrustes: rmse 5.98705e-06 max resid 9.827108e-06
## ... Similar to previous best
## Run 147 stress 0.1235621
## Run 148 stress 0.09428658
## ... Procrustes: rmse 2.091931e-06 max resid 4.174607e-06
## ... Similar to previous best
## Run 149 stress 0.1518355
## Run 150 stress 0.1279813
## Run 151 stress 0.09428658
## ... Procrustes: rmse 1.910798e-06 max resid 3.640834e-06
## ... Similar to previous best
## Run 152 stress 0.09428658
## ... Procrustes: rmse 2.204345e-06 max resid 3.5596e-06
## ... Similar to previous best
## Run 153 stress 0.123562
## Run 154 stress 0.1279813
## Run 155 stress 0.09428658
## ... Procrustes: rmse 1.153625e-06 max resid 1.790498e-06
## ... Similar to previous best
## Run 156 stress 0.09428658
## ... New best solution
## ... Procrustes: rmse 5.214424e-07 max resid 1.067547e-06
## ... Similar to previous best
## Run 157 stress 0.1279813
## Run 158 stress 0.09428658
## ... Procrustes: rmse 3.796642e-06 max resid 7.479814e-06
## ... Similar to previous best
## Run 159 stress 0.1279813
## Run 160 stress 0.09428658
## ... Procrustes: rmse 2.149839e-06 max resid 4.679834e-06
## ... Similar to previous best
## Run 161 stress 0.1279813
## Run 162 stress 0.09428658
## ... Procrustes: rmse 3.943066e-06 max resid 6.691271e-06
## ... Similar to previous best
## Run 163 stress 0.123562
## Run 164 stress 0.1279813
## Run 165 stress 0.123562
## Run 166 stress 0.123562
## Run 167 stress 0.09428658
## ... Procrustes: rmse 2.067386e-06 max resid 3.469692e-06
## ... Similar to previous best
## Run 168 stress 0.09428658
## ... Procrustes: rmse 3.637938e-06 max resid 6.562768e-06
## ... Similar to previous best
## Run 169 stress 0.09428658
## ... Procrustes: rmse 2.903471e-06 max resid 7.216323e-06
## ... Similar to previous best
## Run 170 stress 0.1279813
## Run 171 stress 0.3441863
## Run 172 stress 0.09428658
## ... Procrustes: rmse 1.988896e-06 max resid 4.252742e-06
## ... Similar to previous best
## Run 173 stress 0.1518354
## Run 174 stress 0.09428658
## ... Procrustes: rmse 5.84793e-07 max resid 9.061855e-07
## ... Similar to previous best
## Run 175 stress 0.09428658
## ... Procrustes: rmse 2.102084e-06 max resid 3.758472e-06
## ... Similar to previous best
## Run 176 stress 0.1279813
## Run 177 stress 0.09428658
## ... Procrustes: rmse 1.855032e-06 max resid 5.097311e-06
## ... Similar to previous best
## Run 178 stress 0.1380679
## Run 179 stress 0.123562
## Run 180 stress 0.09428658
## ... Procrustes: rmse 2.123531e-06 max resid 4.416969e-06
## ... Similar to previous best
## Run 181 stress 0.1235621
## Run 182 stress 0.09428658
## ... Procrustes: rmse 1.228253e-06 max resid 2.182257e-06
## ... Similar to previous best
## Run 183 stress 0.09428658
## ... Procrustes: rmse 4.209774e-06 max resid 8.054374e-06
## ... Similar to previous best
## Run 184 stress 0.1380681
## Run 185 stress 0.09428658
## ... Procrustes: rmse 3.054981e-06 max resid 5.570902e-06
## ... Similar to previous best
## Run 186 stress 0.123562
## Run 187 stress 0.09428658
## ... Procrustes: rmse 1.834552e-06 max resid 4.041731e-06
## ... Similar to previous best
## Run 188 stress 0.09428658
## ... Procrustes: rmse 1.440388e-06 max resid 3.287663e-06
## ... Similar to previous best
## Run 189 stress 0.1279813
## Run 190 stress 0.09428658
## ... Procrustes: rmse 2.587692e-06 max resid 6.236132e-06
## ... Similar to previous best
## Run 191 stress 0.1279813
## Run 192 stress 0.1279813
## Run 193 stress 0.1279813
## Run 194 stress 0.1279813
## Run 195 stress 0.09428658
## ... Procrustes: rmse 3.748794e-06 max resid 7.358904e-06
## ... Similar to previous best
## Run 196 stress 0.09428658
## ... Procrustes: rmse 3.746714e-06 max resid 7.169584e-06
## ... Similar to previous best
## Run 197 stress 0.1279813
## Run 198 stress 0.09428658
## ... Procrustes: rmse 1.027972e-06 max resid 2.479344e-06
## ... Similar to previous best
## Run 199 stress 0.09428658
## ... Procrustes: rmse 2.053409e-06 max resid 4.518892e-06
## ... Similar to previous best
## Run 200 stress 0.123562
## Run 201 stress 0.09428658
## ... Procrustes: rmse 4.131119e-06 max resid 8.791761e-06
## ... Similar to previous best
## Run 202 stress 0.09428658
## ... Procrustes: rmse 3.61333e-06 max resid 5.83963e-06
## ... Similar to previous best
## Run 203 stress 0.09428658
## ... Procrustes: rmse 2.492283e-06 max resid 4.537009e-06
## ... Similar to previous best
## Run 204 stress 0.1235621
## Run 205 stress 0.1279813
## Run 206 stress 0.09428658
## ... Procrustes: rmse 1.281273e-06 max resid 2.566759e-06
## ... Similar to previous best
## Run 207 stress 0.1279813
## Run 208 stress 0.1380682
## Run 209 stress 0.1518355
## Run 210 stress 0.123562
## Run 211 stress 0.09428658
## ... Procrustes: rmse 2.064144e-05 max resid 4.051828e-05
## ... Similar to previous best
## Run 212 stress 0.09428658
## ... Procrustes: rmse 3.2876e-06 max resid 5.876686e-06
## ... Similar to previous best
## Run 213 stress 0.09428658
## ... Procrustes: rmse 3.527784e-06 max resid 8.138615e-06
## ... Similar to previous best
## Run 214 stress 0.1235621
## Run 215 stress 0.09428658
## ... Procrustes: rmse 9.277279e-07 max resid 1.848349e-06
## ... Similar to previous best
## Run 216 stress 0.1235621
## Run 217 stress 0.09428658
## ... Procrustes: rmse 3.40282e-06 max resid 6.460332e-06
## ... Similar to previous best
## Run 218 stress 0.09428658
## ... Procrustes: rmse 3.116637e-06 max resid 5.632497e-06
## ... Similar to previous best
## Run 219 stress 0.123562
## Run 220 stress 0.09428658
## ... Procrustes: rmse 5.625177e-06 max resid 1.079994e-05
## ... Similar to previous best
## Run 221 stress 0.09428658
## ... Procrustes: rmse 3.517347e-06 max resid 6.469844e-06
## ... Similar to previous best
## Run 222 stress 0.1279813
## Run 223 stress 0.09428658
## ... Procrustes: rmse 4.335188e-06 max resid 6.736943e-06
## ... Similar to previous best
## Run 224 stress 0.09428658
## ... Procrustes: rmse 2.239815e-06 max resid 3.998415e-06
## ... Similar to previous best
## Run 225 stress 0.1235621
## Run 226 stress 0.09428658
## ... Procrustes: rmse 3.632137e-06 max resid 6.458345e-06
## ... Similar to previous best
## Run 227 stress 0.09428658
## ... Procrustes: rmse 3.073271e-06 max resid 4.732351e-06
## ... Similar to previous best
## Run 228 stress 0.123562
## Run 229 stress 0.3386474
## Run 230 stress 0.1518353
## Run 231 stress 0.09428658
## ... Procrustes: rmse 8.884738e-07 max resid 1.275844e-06
## ... Similar to previous best
## Run 232 stress 0.1279813
## Run 233 stress 0.09428658
## ... Procrustes: rmse 4.009646e-06 max resid 7.64016e-06
## ... Similar to previous best
## Run 234 stress 0.1279813
## Run 235 stress 0.09428658
## ... New best solution
## ... Procrustes: rmse 6.776847e-07 max resid 1.310334e-06
## ... Similar to previous best
## Run 236 stress 0.09428658
## ... Procrustes: rmse 2.915573e-06 max resid 4.632576e-06
## ... Similar to previous best
## Run 237 stress 0.09428658
## ... Procrustes: rmse 3.559842e-06 max resid 6.618191e-06
## ... Similar to previous best
## Run 238 stress 0.1235621
## Run 239 stress 0.09428658
## ... Procrustes: rmse 3.034843e-06 max resid 5.833489e-06
## ... Similar to previous best
## Run 240 stress 0.09428658
## ... Procrustes: rmse 4.705855e-06 max resid 8.675174e-06
## ... Similar to previous best
## Run 241 stress 0.09428658
## ... Procrustes: rmse 6.757255e-06 max resid 1.199492e-05
## ... Similar to previous best
## Run 242 stress 0.09428658
## ... Procrustes: rmse 1.152477e-06 max resid 2.124131e-06
## ... Similar to previous best
## Run 243 stress 0.123562
## Run 244 stress 0.09428658
## ... Procrustes: rmse 5.83439e-06 max resid 9.699703e-06
## ... Similar to previous best
## Run 245 stress 0.09428658
## ... Procrustes: rmse 4.528145e-06 max resid 8.250019e-06
## ... Similar to previous best
## Run 246 stress 0.09428658
## ... Procrustes: rmse 1.036642e-06 max resid 1.558887e-06
## ... Similar to previous best
## Run 247 stress 0.09428658
## ... Procrustes: rmse 2.237259e-06 max resid 5.049166e-06
## ... Similar to previous best
## Run 248 stress 0.09428658
## ... Procrustes: rmse 1.536838e-06 max resid 2.933498e-06
## ... Similar to previous best
## Run 249 stress 0.09428658
## ... Procrustes: rmse 7.443904e-06 max resid 1.395768e-05
## ... Similar to previous best
## Run 250 stress 0.123562
## Run 251 stress 0.09428658
## ... Procrustes: rmse 4.069333e-06 max resid 7.278616e-06
## ... Similar to previous best
## Run 252 stress 0.123562
## Run 253 stress 0.123562
## Run 254 stress 0.1235621
## Run 255 stress 0.1279813
## Run 256 stress 0.1235621
## Run 257 stress 0.09428658
## ... Procrustes: rmse 1.579842e-06 max resid 3.472925e-06
## ... Similar to previous best
## Run 258 stress 0.123562
## Run 259 stress 0.09428658
## ... Procrustes: rmse 1.024319e-06 max resid 1.956637e-06
## ... Similar to previous best
## Run 260 stress 0.09428658
## ... Procrustes: rmse 2.164617e-06 max resid 4.091255e-06
## ... Similar to previous best
## Run 261 stress 0.09428658
## ... Procrustes: rmse 2.878406e-06 max resid 6.049562e-06
## ... Similar to previous best
## Run 262 stress 0.1235621
## Run 263 stress 0.1279813
## Run 264 stress 0.09428658
## ... Procrustes: rmse 9.151695e-07 max resid 2.185324e-06
## ... Similar to previous best
## Run 265 stress 0.09428658
## ... Procrustes: rmse 1.137109e-06 max resid 2.106539e-06
## ... Similar to previous best
## Run 266 stress 0.1279813
## Run 267 stress 0.123562
## Run 268 stress 0.09428658
## ... Procrustes: rmse 8.801539e-06 max resid 1.55651e-05
## ... Similar to previous best
## Run 269 stress 0.09428658
## ... Procrustes: rmse 4.545356e-06 max resid 7.937449e-06
## ... Similar to previous best
## Run 270 stress 0.09428658
## ... Procrustes: rmse 1.30061e-06 max resid 2.255593e-06
## ... Similar to previous best
## Run 271 stress 0.09428658
## ... Procrustes: rmse 2.833735e-06 max resid 5.155689e-06
## ... Similar to previous best
## Run 272 stress 0.123562
## Run 273 stress 0.1235621
## Run 274 stress 0.09428658
## ... Procrustes: rmse 3.078465e-06 max resid 5.921199e-06
## ... Similar to previous best
## Run 275 stress 0.09428658
## ... Procrustes: rmse 4.478491e-06 max resid 1.01786e-05
## ... Similar to previous best
## Run 276 stress 0.123562
## Run 277 stress 0.1279813
## Run 278 stress 0.09428658
## ... Procrustes: rmse 3.203883e-06 max resid 5.870497e-06
## ... Similar to previous best
## Run 279 stress 0.09428658
## ... Procrustes: rmse 9.995148e-07 max resid 1.583626e-06
## ... Similar to previous best
## Run 280 stress 0.1382
## Run 281 stress 0.1279813
## Run 282 stress 0.09428658
## ... Procrustes: rmse 4.516257e-06 max resid 1.01548e-05
## ... Similar to previous best
## Run 283 stress 0.123562
## Run 284 stress 0.123562
## Run 285 stress 0.09428658
## ... Procrustes: rmse 1.393159e-06 max resid 2.530107e-06
## ... Similar to previous best
## Run 286 stress 0.123562
## Run 287 stress 0.09428658
## ... Procrustes: rmse 1.077887e-06 max resid 2.530334e-06
## ... Similar to previous best
## Run 288 stress 0.09428658
## ... Procrustes: rmse 3.06935e-06 max resid 4.800479e-06
## ... Similar to previous best
## Run 289 stress 0.1279813
## Run 290 stress 0.09428658
## ... New best solution
## ... Procrustes: rmse 4.925192e-07 max resid 8.378069e-07
## ... Similar to previous best
## Run 291 stress 0.09428658
## ... Procrustes: rmse 2.723798e-06 max resid 5.802886e-06
## ... Similar to previous best
## Run 292 stress 0.123562
## Run 293 stress 0.123562
## Run 294 stress 0.123562
## Run 295 stress 0.09428658
## ... Procrustes: rmse 3.15916e-06 max resid 6.265085e-06
## ... Similar to previous best
## Run 296 stress 0.1490896
## Run 297 stress 0.123562
## Run 298 stress 0.2990515
## Run 299 stress 0.123562
## Run 300 stress 0.1235621
## Run 301 stress 0.09428658
## ... Procrustes: rmse 7.028621e-07 max resid 1.632524e-06
## ... Similar to previous best
## Run 302 stress 0.1279813
## Run 303 stress 0.09428658
## ... Procrustes: rmse 5.729049e-06 max resid 1.144037e-05
## ... Similar to previous best
## Run 304 stress 0.09428658
## ... Procrustes: rmse 4.856708e-06 max resid 8.925923e-06
## ... Similar to previous best
## Run 305 stress 0.1279813
## Run 306 stress 0.09428658
## ... Procrustes: rmse 1.797794e-06 max resid 3.791743e-06
## ... Similar to previous best
## Run 307 stress 0.1279813
## Run 308 stress 0.1279813
## Run 309 stress 0.1279813
## Run 310 stress 0.1380678
## Run 311 stress 0.123562
## Run 312 stress 0.1380679
## Run 313 stress 0.3434206
## Run 314 stress 0.1279813
## Run 315 stress 0.09428658
## ... Procrustes: rmse 3.8928e-06 max resid 7.842607e-06
## ... Similar to previous best
## Run 316 stress 0.1279813
## Run 317 stress 0.1279813
## Run 318 stress 0.1235621
## Run 319 stress 0.09428658
## ... Procrustes: rmse 1.108726e-06 max resid 1.770227e-06
## ... Similar to previous best
## Run 320 stress 0.09428658
## ... Procrustes: rmse 4.71896e-06 max resid 8.99603e-06
## ... Similar to previous best
## Run 321 stress 0.1279813
## Run 322 stress 0.1279813
## Run 323 stress 0.1279813
## Run 324 stress 0.09428658
## ... Procrustes: rmse 3.832265e-06 max resid 8.133131e-06
## ... Similar to previous best
## Run 325 stress 0.123562
## Run 326 stress 0.1279813
## Run 327 stress 0.09428658
## ... Procrustes: rmse 2.416057e-06 max resid 3.899363e-06
## ... Similar to previous best
## Run 328 stress 0.1380679
## Run 329 stress 0.1279813
## Run 330 stress 0.09428658
## ... Procrustes: rmse 1.276024e-06 max resid 3.35159e-06
## ... Similar to previous best
## Run 331 stress 0.09428658
## ... Procrustes: rmse 2.904368e-06 max resid 6.340049e-06
## ... Similar to previous best
## Run 332 stress 0.1279813
## Run 333 stress 0.09428658
## ... Procrustes: rmse 1.19952e-06 max resid 2.747065e-06
## ... Similar to previous best
## Run 334 stress 0.09428658
## ... Procrustes: rmse 1.813473e-06 max resid 3.872872e-06
## ... Similar to previous best
## Run 335 stress 0.123562
## Run 336 stress 0.09428658
## ... Procrustes: rmse 3.834138e-06 max resid 7.307436e-06
## ... Similar to previous best
## Run 337 stress 0.09428658
## ... Procrustes: rmse 2.722019e-06 max resid 4.331342e-06
## ... Similar to previous best
## Run 338 stress 0.1279813
## Run 339 stress 0.09428658
## ... Procrustes: rmse 7.48993e-06 max resid 1.346211e-05
## ... Similar to previous best
## Run 340 stress 0.09428658
## ... Procrustes: rmse 2.45224e-06 max resid 4.140597e-06
## ... Similar to previous best
## Run 341 stress 0.1380678
## Run 342 stress 0.09428658
## ... Procrustes: rmse 2.869991e-06 max resid 5.636561e-06
## ... Similar to previous best
## Run 343 stress 0.09428658
## ... Procrustes: rmse 2.432578e-06 max resid 4.795844e-06
## ... Similar to previous best
## Run 344 stress 0.1382
## Run 345 stress 0.1279813
## Run 346 stress 0.09428658
## ... Procrustes: rmse 4.161062e-06 max resid 7.03155e-06
## ... Similar to previous best
## Run 347 stress 0.1279813
## Run 348 stress 0.09428658
## ... Procrustes: rmse 2.0454e-06 max resid 3.302079e-06
## ... Similar to previous best
## Run 349 stress 0.09428658
## ... Procrustes: rmse 4.442561e-07 max resid 8.144911e-07
## ... Similar to previous best
## Run 350 stress 0.1279813
## Run 351 stress 0.123562
## Run 352 stress 0.09428658
## ... Procrustes: rmse 1.325997e-06 max resid 2.099484e-06
## ... Similar to previous best
## Run 353 stress 0.1279813
## Run 354 stress 0.1279813
## Run 355 stress 0.123562
## Run 356 stress 0.09428658
## ... Procrustes: rmse 2.348591e-06 max resid 4.985172e-06
## ... Similar to previous best
## Run 357 stress 0.09428658
## ... Procrustes: rmse 2.337474e-06 max resid 3.807161e-06
## ... Similar to previous best
## Run 358 stress 0.1235621
## Run 359 stress 0.09428658
## ... Procrustes: rmse 2.441934e-06 max resid 5.706586e-06
## ... Similar to previous best
## Run 360 stress 0.1380678
## Run 361 stress 0.123562
## Run 362 stress 0.09428658
## ... Procrustes: rmse 2.130325e-06 max resid 3.992308e-06
## ... Similar to previous best
## Run 363 stress 0.1279813
## Run 364 stress 0.123562
## Run 365 stress 0.123562
## Run 366 stress 0.09428658
## ... Procrustes: rmse 3.089982e-06 max resid 5.997371e-06
## ... Similar to previous best
## Run 367 stress 0.09428658
## ... Procrustes: rmse 2.455765e-06 max resid 3.811892e-06
## ... Similar to previous best
## Run 368 stress 0.09428658
## ... Procrustes: rmse 7.243311e-06 max resid 1.218052e-05
## ... Similar to previous best
## Run 369 stress 0.123562
## Run 370 stress 0.1279813
## Run 371 stress 0.123562
## Run 372 stress 0.09428658
## ... Procrustes: rmse 4.660222e-07 max resid 1.08594e-06
## ... Similar to previous best
## Run 373 stress 0.09428658
## ... Procrustes: rmse 1.567114e-06 max resid 2.874542e-06
## ... Similar to previous best
## Run 374 stress 0.1279813
## Run 375 stress 0.1279813
## Run 376 stress 0.09428658
## ... Procrustes: rmse 3.256939e-06 max resid 7.886871e-06
## ... Similar to previous best
## Run 377 stress 0.09428658
## ... Procrustes: rmse 4.171201e-06 max resid 6.667033e-06
## ... Similar to previous best
## Run 378 stress 0.123562
## Run 379 stress 0.09428658
## ... Procrustes: rmse 2.502747e-06 max resid 5.131837e-06
## ... Similar to previous best
## Run 380 stress 0.09428658
## ... Procrustes: rmse 2.912443e-06 max resid 5.102176e-06
## ... Similar to previous best
## Run 381 stress 0.1235621
## Run 382 stress 0.09428658
## ... Procrustes: rmse 3.229408e-06 max resid 6.698376e-06
## ... Similar to previous best
## Run 383 stress 0.123562
## Run 384 stress 0.09428658
## ... Procrustes: rmse 9.20529e-06 max resid 1.759966e-05
## ... Similar to previous best
## Run 385 stress 0.09428658
## ... Procrustes: rmse 1.735536e-06 max resid 3.526921e-06
## ... Similar to previous best
## Run 386 stress 0.09428658
## ... Procrustes: rmse 3.155616e-06 max resid 5.588961e-06
## ... Similar to previous best
## Run 387 stress 0.1279813
## Run 388 stress 0.09428658
## ... Procrustes: rmse 4.043743e-06 max resid 8.914978e-06
## ... Similar to previous best
## Run 389 stress 0.09428658
## ... Procrustes: rmse 1.165695e-06 max resid 2.613003e-06
## ... Similar to previous best
## Run 390 stress 0.09428658
## ... Procrustes: rmse 2.915251e-06 max resid 5.523286e-06
## ... Similar to previous best
## Run 391 stress 0.123562
## Run 392 stress 0.09428658
## ... Procrustes: rmse 1.781014e-06 max resid 4.622809e-06
## ... Similar to previous best
## Run 393 stress 0.1490896
## Run 394 stress 0.138068
## Run 395 stress 0.123562
## Run 396 stress 0.1279813
## Run 397 stress 0.123562
## Run 398 stress 0.09428658
## ... Procrustes: rmse 8.940219e-07 max resid 2.238067e-06
## ... Similar to previous best
## Run 399 stress 0.123562
## Run 400 stress 0.09428658
## ... Procrustes: rmse 1.515107e-06 max resid 3.251667e-06
## ... Similar to previous best
## Run 401 stress 0.09428658
## ... Procrustes: rmse 1.706867e-06 max resid 2.768028e-06
## ... Similar to previous best
## Run 402 stress 0.09428658
## ... Procrustes: rmse 3.269498e-06 max resid 9.040845e-06
## ... Similar to previous best
## Run 403 stress 0.1235621
## Run 404 stress 0.09428658
## ... Procrustes: rmse 3.43376e-06 max resid 6.267076e-06
## ... Similar to previous best
## Run 405 stress 0.09428658
## ... Procrustes: rmse 1.012621e-06 max resid 2.517325e-06
## ... Similar to previous best
## Run 406 stress 0.1279813
## Run 407 stress 0.1279813
## Run 408 stress 0.1380678
## Run 409 stress 0.1279813
## Run 410 stress 0.1490896
## Run 411 stress 0.09428658
## ... Procrustes: rmse 2.623396e-06 max resid 4.709969e-06
## ... Similar to previous best
## Run 412 stress 0.1279813
## Run 413 stress 0.09428658
## ... Procrustes: rmse 4.301572e-06 max resid 8.535679e-06
## ... Similar to previous best
## Run 414 stress 0.1279813
## Run 415 stress 0.09428658
## ... Procrustes: rmse 8.153955e-07 max resid 1.990827e-06
## ... Similar to previous best
## Run 416 stress 0.09428658
## ... Procrustes: rmse 1.98683e-06 max resid 3.209748e-06
## ... Similar to previous best
## Run 417 stress 0.1279813
## Run 418 stress 0.1518355
## Run 419 stress 0.1279813
## Run 420 stress 0.1279813
## Run 421 stress 0.09428658
## ... Procrustes: rmse 9.948215e-07 max resid 1.986987e-06
## ... Similar to previous best
## Run 422 stress 0.1279813
## Run 423 stress 0.3379685
## Run 424 stress 0.1279813
## Run 425 stress 0.09428658
## ... Procrustes: rmse 2.751561e-06 max resid 7.422649e-06
## ... Similar to previous best
## Run 426 stress 0.09428658
## ... Procrustes: rmse 5.153956e-06 max resid 9.881644e-06
## ... Similar to previous best
## Run 427 stress 0.09428658
## ... Procrustes: rmse 6.833703e-06 max resid 1.17144e-05
## ... Similar to previous best
## Run 428 stress 0.09428658
## ... Procrustes: rmse 1.655856e-06 max resid 3.519211e-06
## ... Similar to previous best
## Run 429 stress 0.09428658
## ... Procrustes: rmse 2.136829e-06 max resid 3.441587e-06
## ... Similar to previous best
## Run 430 stress 0.09428658
## ... Procrustes: rmse 1.756855e-06 max resid 3.724493e-06
## ... Similar to previous best
## Run 431 stress 0.09428658
## ... Procrustes: rmse 2.756987e-06 max resid 6.866995e-06
## ... Similar to previous best
## Run 432 stress 0.09428658
## ... Procrustes: rmse 7.105598e-07 max resid 1.537334e-06
## ... Similar to previous best
## Run 433 stress 0.1279813
## Run 434 stress 0.09428658
## ... Procrustes: rmse 2.166956e-06 max resid 3.448793e-06
## ... Similar to previous best
## Run 435 stress 0.1279813
## Run 436 stress 0.09428658
## ... Procrustes: rmse 2.623607e-06 max resid 6.232882e-06
## ... Similar to previous best
## Run 437 stress 0.1279813
## Run 438 stress 0.1279813
## Run 439 stress 0.1279813
## Run 440 stress 0.09428658
## ... Procrustes: rmse 1.869875e-06 max resid 3.231906e-06
## ... Similar to previous best
## Run 441 stress 0.123562
## Run 442 stress 0.09428658
## ... Procrustes: rmse 9.363867e-07 max resid 1.67707e-06
## ... Similar to previous best
## Run 443 stress 0.09428658
## ... Procrustes: rmse 6.220545e-06 max resid 1.19998e-05
## ... Similar to previous best
## Run 444 stress 0.09428658
## ... Procrustes: rmse 4.112357e-06 max resid 8.85126e-06
## ... Similar to previous best
## Run 445 stress 0.123562
## Run 446 stress 0.1518353
## Run 447 stress 0.123562
## Run 448 stress 0.1235621
## Run 449 stress 0.09428658
## ... Procrustes: rmse 9.753586e-07 max resid 1.793487e-06
## ... Similar to previous best
## Run 450 stress 0.09428658
## ... Procrustes: rmse 1.778216e-06 max resid 3.882352e-06
## ... Similar to previous best
## Run 451 stress 0.123562
## Run 452 stress 0.123562
## Run 453 stress 0.1279813
## Run 454 stress 0.1279813
## Run 455 stress 0.1279813
## Run 456 stress 0.09428658
## ... Procrustes: rmse 1.553376e-06 max resid 3.540018e-06
## ... Similar to previous best
## Run 457 stress 0.3047261
## Run 458 stress 0.09428658
## ... Procrustes: rmse 1.072127e-06 max resid 1.880765e-06
## ... Similar to previous best
## Run 459 stress 0.1279813
## Run 460 stress 0.09428658
## ... Procrustes: rmse 3.463516e-06 max resid 7.05199e-06
## ... Similar to previous best
## Run 461 stress 0.09428658
## ... Procrustes: rmse 8.541288e-07 max resid 1.944952e-06
## ... Similar to previous best
## Run 462 stress 0.09428658
## ... Procrustes: rmse 2.339311e-06 max resid 5.03379e-06
## ... Similar to previous best
## Run 463 stress 0.1279813
## Run 464 stress 0.09428658
## ... Procrustes: rmse 4.86771e-06 max resid 9.19794e-06
## ... Similar to previous best
## Run 465 stress 0.09428658
## ... Procrustes: rmse 1.716621e-06 max resid 2.939384e-06
## ... Similar to previous best
## Run 466 stress 0.09428658
## ... Procrustes: rmse 6.502974e-06 max resid 1.222132e-05
## ... Similar to previous best
## Run 467 stress 0.1279813
## Run 468 stress 0.1279813
## Run 469 stress 0.1518354
## Run 470 stress 0.1279813
## Run 471 stress 0.09428658
## ... Procrustes: rmse 2.22714e-06 max resid 4.758483e-06
## ... Similar to previous best
## Run 472 stress 0.09428658
## ... Procrustes: rmse 4.420812e-06 max resid 8.355904e-06
## ... Similar to previous best
## Run 473 stress 0.123562
## Run 474 stress 0.09428658
## ... Procrustes: rmse 3.218123e-06 max resid 6.191637e-06
## ... Similar to previous best
## Run 475 stress 0.09428658
## ... Procrustes: rmse 6.549284e-06 max resid 1.04873e-05
## ... Similar to previous best
## Run 476 stress 0.1279813
## Run 477 stress 0.1490896
## Run 478 stress 0.09428658
## ... Procrustes: rmse 4.19578e-06 max resid 8.242523e-06
## ... Similar to previous best
## Run 479 stress 0.1380678
## Run 480 stress 0.09428658
## ... Procrustes: rmse 7.799248e-07 max resid 1.766785e-06
## ... Similar to previous best
## Run 481 stress 0.09428658
## ... Procrustes: rmse 3.112455e-06 max resid 5.11912e-06
## ... Similar to previous best
## Run 482 stress 0.09428658
## ... Procrustes: rmse 2.160641e-06 max resid 3.425834e-06
## ... Similar to previous best
## Run 483 stress 0.09428658
## ... Procrustes: rmse 2.601818e-06 max resid 6.473298e-06
## ... Similar to previous best
## Run 484 stress 0.123562
## Run 485 stress 0.09428658
## ... Procrustes: rmse 1.983711e-06 max resid 3.965701e-06
## ... Similar to previous best
## Run 486 stress 0.1279813
## Run 487 stress 0.09428658
## ... Procrustes: rmse 1.861251e-06 max resid 2.942649e-06
## ... Similar to previous best
## Run 488 stress 0.123562
## Run 489 stress 0.123562
## Run 490 stress 0.123562
## Run 491 stress 0.1518353
## Run 492 stress 0.1279813
## Run 493 stress 0.09428658
## ... Procrustes: rmse 7.642623e-07 max resid 1.220908e-06
## ... Similar to previous best
## Run 494 stress 0.09428658
## ... Procrustes: rmse 1.756544e-06 max resid 4.276958e-06
## ... Similar to previous best
## Run 495 stress 0.123562
## Run 496 stress 0.1490896
## Run 497 stress 0.1279813
## Run 498 stress 0.09428658
## ... Procrustes: rmse 1.018315e-06 max resid 1.850571e-06
## ... Similar to previous best
## Run 499 stress 0.09428658
## ... Procrustes: rmse 4.037974e-06 max resid 8.669512e-06
## ... Similar to previous best
## Run 500 stress 0.1235621
## *** Best solution repeated 97 times# Stratified lakes and ocean sites
pdbso_NMDS <- metaMDS(pdbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.05794554
## Run 1 stress 0.05438255
## ... New best solution
## ... Procrustes: rmse 0.02975648 max resid 0.06000307
## Run 2 stress 0.04733854
## ... New best solution
## ... Procrustes: rmse 0.06320461 max resid 0.1560589
## Run 3 stress 0.05794552
## Run 4 stress 0.04704142
## ... New best solution
## ... Procrustes: rmse 0.05309649 max resid 0.1468445
## Run 5 stress 0.04704142
## ... New best solution
## ... Procrustes: rmse 1.196575e-05 max resid 2.164824e-05
## ... Similar to previous best
## Run 6 stress 0.04704142
## ... Procrustes: rmse 1.980917e-05 max resid 4.894869e-05
## ... Similar to previous best
## Run 7 stress 0.04733845
## ... Procrustes: rmse 0.0531161 max resid 0.1478864
## Run 8 stress 0.06793793
## Run 9 stress 0.04733848
## ... Procrustes: rmse 0.05312342 max resid 0.1478241
## Run 10 stress 0.0579456
## Run 11 stress 0.04704143
## ... Procrustes: rmse 3.656296e-05 max resid 7.989583e-05
## ... Similar to previous best
## Run 12 stress 0.3292637
## Run 13 stress 0.04733848
## ... Procrustes: rmse 0.05311938 max resid 0.1478231
## Run 14 stress 0.05368169
## Run 15 stress 0.357849
## Run 16 stress 0.05820947
## Run 17 stress 0.04733851
## ... Procrustes: rmse 0.05312557 max resid 0.1477993
## Run 18 stress 0.05120133
## Run 19 stress 0.04976569
## Run 20 stress 0.05692511
## Run 21 stress 0.05683291
## Run 22 stress 0.05368173
## Run 23 stress 0.05120129
## Run 24 stress 0.0602173
## Run 25 stress 0.04976561
## Run 26 stress 0.0512014
## Run 27 stress 0.05192135
## Run 28 stress 0.05670742
## Run 29 stress 0.0579455
## Run 30 stress 0.0473385
## ... Procrustes: rmse 0.0531016 max resid 0.1479598
## Run 31 stress 0.06492713
## Run 32 stress 0.05289269
## Run 33 stress 0.04733858
## ... Procrustes: rmse 0.05313107 max resid 0.1477613
## Run 34 stress 0.05670742
## Run 35 stress 0.05270351
## Run 36 stress 0.05270349
## Run 37 stress 0.3495701
## Run 38 stress 0.04733847
## ... Procrustes: rmse 0.0531059 max resid 0.1479361
## Run 39 stress 0.05356863
## Run 40 stress 0.05821018
## Run 41 stress 0.05593314
## Run 42 stress 0.05120094
## Run 43 stress 0.05733789
## Run 44 stress 0.3495692
## Run 45 stress 0.0512014
## Run 46 stress 0.05967101
## Run 47 stress 0.05967105
## Run 48 stress 0.0497656
## Run 49 stress 0.05967085
## Run 50 stress 0.05434412
## Run 51 stress 0.05605326
## Run 52 stress 0.05832481
## Run 53 stress 0.05683285
## Run 54 stress 0.05733799
## Run 55 stress 0.06021728
## Run 56 stress 0.05356861
## Run 57 stress 0.06021731
## Run 58 stress 0.04733846
## ... Procrustes: rmse 0.05310578 max resid 0.1478538
## Run 59 stress 0.05434411
## Run 60 stress 0.05434413
## Run 61 stress 0.06021732
## Run 62 stress 0.05794567
## Run 63 stress 0.05670745
## Run 64 stress 0.05683277
## Run 65 stress 0.05670745
## Run 66 stress 0.04976569
## Run 67 stress 0.04733848
## ... Procrustes: rmse 0.053098 max resid 0.1478978
## Run 68 stress 0.04704142
## ... New best solution
## ... Procrustes: rmse 2.48778e-06 max resid 5.7008e-06
## ... Similar to previous best
## Run 69 stress 0.05440161
## Run 70 stress 0.04976569
## Run 71 stress 0.05692498
## Run 72 stress 0.04704144
## ... Procrustes: rmse 4.743474e-05 max resid 0.000116958
## ... Similar to previous best
## Run 73 stress 0.05683287
## Run 74 stress 0.05794563
## Run 75 stress 0.05670743
## Run 76 stress 0.04733851
## ... Procrustes: rmse 0.05310257 max resid 0.1479655
## Run 77 stress 0.05794559
## Run 78 stress 0.05794551
## Run 79 stress 0.05683281
## Run 80 stress 0.04704142
## ... Procrustes: rmse 1.891685e-05 max resid 3.156844e-05
## ... Similar to previous best
## Run 81 stress 0.05794554
## Run 82 stress 0.0579456
## Run 83 stress 0.04976563
## Run 84 stress 0.05270349
## Run 85 stress 0.04704142
## ... Procrustes: rmse 8.623101e-06 max resid 1.422944e-05
## ... Similar to previous best
## Run 86 stress 0.04976573
## Run 87 stress 0.05438267
## Run 88 stress 0.06287263
## Run 89 stress 0.04976565
## Run 90 stress 0.0583246
## Run 91 stress 0.06021728
## Run 92 stress 0.05438259
## Run 93 stress 0.05434411
## Run 94 stress 0.05850684
## Run 95 stress 0.05438251
## Run 96 stress 0.0628726
## Run 97 stress 0.05434414
## Run 98 stress 0.05593298
## Run 99 stress 0.04704142
## ... Procrustes: rmse 6.744311e-06 max resid 1.413352e-05
## ... Similar to previous best
## Run 100 stress 0.05289271
## Run 101 stress 0.0497658
## Run 102 stress 0.05593298
## Run 103 stress 0.05850686
## Run 104 stress 0.06021731
## Run 105 stress 0.05820946
## Run 106 stress 0.357849
## Run 107 stress 0.05356859
## Run 108 stress 0.04704144
## ... Procrustes: rmse 2.237978e-05 max resid 4.504282e-05
## ... Similar to previous best
## Run 109 stress 0.0473385
## ... Procrustes: rmse 0.05310265 max resid 0.1479649
## Run 110 stress 0.05967084
## Run 111 stress 0.04704145
## ... Procrustes: rmse 6.754041e-05 max resid 0.0001724499
## ... Similar to previous best
## Run 112 stress 0.05368174
## Run 113 stress 0.04976567
## Run 114 stress 0.04976561
## Run 115 stress 0.04733845
## ... Procrustes: rmse 0.053116 max resid 0.1478705
## Run 116 stress 0.05692508
## Run 117 stress 0.05434416
## Run 118 stress 0.0582094
## Run 119 stress 0.05850677
## Run 120 stress 0.05670745
## Run 121 stress 0.04733854
## ... Procrustes: rmse 0.05309872 max resid 0.1479852
## Run 122 stress 0.05356863
## Run 123 stress 0.04733847
## ... Procrustes: rmse 0.05311255 max resid 0.1479093
## Run 124 stress 0.05270354
## Run 125 stress 0.04976563
## Run 126 stress 0.05438254
## Run 127 stress 0.04704143
## ... Procrustes: rmse 4.083792e-05 max resid 6.713244e-05
## ... Similar to previous best
## Run 128 stress 0.04976577
## Run 129 stress 0.04704142
## ... Procrustes: rmse 1.624262e-05 max resid 3.62937e-05
## ... Similar to previous best
## Run 130 stress 0.04976563
## Run 131 stress 0.04976564
## Run 132 stress 0.04976572
## Run 133 stress 0.05733804
## Run 134 stress 0.05270349
## Run 135 stress 0.04976563
## Run 136 stress 0.04733845
## ... Procrustes: rmse 0.05311612 max resid 0.1478873
## Run 137 stress 0.06876685
## Run 138 stress 0.05289269
## Run 139 stress 0.0579457
## Run 140 stress 0.06696167
## Run 141 stress 0.05440163
## Run 142 stress 0.05192134
## Run 143 stress 0.05733783
## Run 144 stress 0.04704142
## ... Procrustes: rmse 3.993962e-06 max resid 6.960098e-06
## ... Similar to previous best
## Run 145 stress 0.06829694
## Run 146 stress 0.05438263
## Run 147 stress 0.05692516
## Run 148 stress 0.04733851
## ... Procrustes: rmse 0.05310188 max resid 0.1479638
## Run 149 stress 0.05967096
## Run 150 stress 0.05289269
## Run 151 stress 0.05165245
## Run 152 stress 0.05192132
## Run 153 stress 0.04733859
## ... Procrustes: rmse 0.05309779 max resid 0.1479891
## Run 154 stress 0.05440159
## Run 155 stress 0.04704143
## ... Procrustes: rmse 2.5144e-05 max resid 6.260045e-05
## ... Similar to previous best
## Run 156 stress 0.06287261
## Run 157 stress 0.04976569
## Run 158 stress 0.05502839
## Run 159 stress 0.05820952
## Run 160 stress 0.05438256
## Run 161 stress 0.05356859
## Run 162 stress 0.04976562
## Run 163 stress 0.05120159
## Run 164 stress 0.05438267
## Run 165 stress 0.04976569
## Run 166 stress 0.06876678
## Run 167 stress 0.05120141
## Run 168 stress 0.05670743
## Run 169 stress 0.05733796
## Run 170 stress 0.04733846
## ... Procrustes: rmse 0.05311795 max resid 0.1478452
## Run 171 stress 0.05356859
## Run 172 stress 0.05270355
## Run 173 stress 0.05438255
## Run 174 stress 0.05438255
## Run 175 stress 0.04976564
## Run 176 stress 0.05794555
## Run 177 stress 0.05692512
## Run 178 stress 0.05438262
## Run 179 stress 0.0543441
## Run 180 stress 0.05820932
## Run 181 stress 0.04733848
## ... Procrustes: rmse 0.05310545 max resid 0.1479454
## Run 182 stress 0.05670745
## Run 183 stress 0.06021728
## Run 184 stress 0.05794565
## Run 185 stress 0.06021732
## Run 186 stress 0.05692519
## Run 187 stress 0.05438253
## Run 188 stress 0.06492705
## Run 189 stress 0.04733854
## ... Procrustes: rmse 0.05312881 max resid 0.1477872
## Run 190 stress 0.05438256
## Run 191 stress 0.05794559
## Run 192 stress 0.05692498
## Run 193 stress 0.05440157
## Run 194 stress 0.05192133
## Run 195 stress 0.05438254
## Run 196 stress 0.05120101
## Run 197 stress 0.05683289
## Run 198 stress 0.05368169
## Run 199 stress 0.04976577
## Run 200 stress 0.06374884
## Run 201 stress 0.04704142
## ... Procrustes: rmse 2.177256e-05 max resid 4.430379e-05
## ... Similar to previous best
## Run 202 stress 0.04733848
## ... Procrustes: rmse 0.05312361 max resid 0.1478327
## Run 203 stress 0.04704142
## ... Procrustes: rmse 3.898952e-06 max resid 7.19412e-06
## ... Similar to previous best
## Run 204 stress 0.04976581
## Run 205 stress 0.05192132
## Run 206 stress 0.3578483
## Run 207 stress 0.3493378
## Run 208 stress 0.05794552
## Run 209 stress 0.06287264
## Run 210 stress 0.05692497
## Run 211 stress 0.06021731
## Run 212 stress 0.06374881
## Run 213 stress 0.06876673
## Run 214 stress 0.0527035
## Run 215 stress 0.05120101
## Run 216 stress 0.04733847
## ... Procrustes: rmse 0.05310846 max resid 0.1479294
## Run 217 stress 0.05670747
## Run 218 stress 0.06021729
## Run 219 stress 0.05502839
## Run 220 stress 0.06793795
## Run 221 stress 0.04704144
## ... Procrustes: rmse 5.507254e-05 max resid 0.0001410426
## ... Similar to previous best
## Run 222 stress 0.05926581
## Run 223 stress 0.05794552
## Run 224 stress 0.04733849
## ... Procrustes: rmse 0.05310401 max resid 0.1479549
## Run 225 stress 0.05926577
## Run 226 stress 0.04976573
## Run 227 stress 0.04976561
## Run 228 stress 0.04704143
## ... Procrustes: rmse 3.464799e-05 max resid 8.664827e-05
## ... Similar to previous best
## Run 229 stress 0.05120149
## Run 230 stress 0.05926579
## Run 231 stress 0.04733845
## ... Procrustes: rmse 0.05311501 max resid 0.1478931
## Run 232 stress 0.0527035
## Run 233 stress 0.05692524
## Run 234 stress 0.0497657
## Run 235 stress 0.04976568
## Run 236 stress 0.06374888
## Run 237 stress 0.0535686
## Run 238 stress 0.04704142
## ... Procrustes: rmse 2.331741e-05 max resid 5.057826e-05
## ... Similar to previous best
## Run 239 stress 0.04704144
## ... Procrustes: rmse 5.073083e-05 max resid 8.702986e-05
## ... Similar to previous best
## Run 240 stress 0.0473385
## ... Procrustes: rmse 0.05310236 max resid 0.1479626
## Run 241 stress 0.04704142
## ... Procrustes: rmse 1.192035e-05 max resid 1.908713e-05
## ... Similar to previous best
## Run 242 stress 0.04704142
## ... Procrustes: rmse 3.296247e-06 max resid 5.700387e-06
## ... Similar to previous best
## Run 243 stress 0.04733846
## ... Procrustes: rmse 0.05310945 max resid 0.1479241
## Run 244 stress 0.04733845
## ... Procrustes: rmse 0.0531144 max resid 0.147853
## Run 245 stress 0.04976577
## Run 246 stress 0.05270351
## Run 247 stress 0.06793801
## Run 248 stress 0.05670743
## Run 249 stress 0.0543441
## Run 250 stress 0.05165246
## Run 251 stress 0.04733849
## ... Procrustes: rmse 0.05311288 max resid 0.1479035
## Run 252 stress 0.05733784
## Run 253 stress 0.05670745
## Run 254 stress 0.0602173
## Run 255 stress 0.05692495
## Run 256 stress 0.04733848
## ... Procrustes: rmse 0.05310511 max resid 0.14795
## Run 257 stress 0.04976561
## Run 258 stress 0.05192135
## Run 259 stress 0.05670746
## Run 260 stress 0.05270351
## Run 261 stress 0.04733846
## ... Procrustes: rmse 0.05311723 max resid 0.1478644
## Run 262 stress 0.05356866
## Run 263 stress 0.04733846
## ... Procrustes: rmse 0.05310852 max resid 0.1478943
## Run 264 stress 0.04976563
## Run 265 stress 0.05438255
## Run 266 stress 0.05122765
## Run 267 stress 0.04733847
## ... Procrustes: rmse 0.05310837 max resid 0.1479309
## Run 268 stress 0.04733847
## ... Procrustes: rmse 0.05310715 max resid 0.1479386
## Run 269 stress 0.05692514
## Run 270 stress 0.05356859
## Run 271 stress 0.0535686
## Run 272 stress 0.05120115
## Run 273 stress 0.06287265
## Run 274 stress 0.05120097
## Run 275 stress 0.04733852
## ... Procrustes: rmse 0.0531035 max resid 0.1479672
## Run 276 stress 0.06374883
## Run 277 stress 0.06492706
## Run 278 stress 0.04704144
## ... Procrustes: rmse 4.800145e-05 max resid 7.8448e-05
## ... Similar to previous best
## Run 279 stress 0.04733846
## ... Procrustes: rmse 0.05310981 max resid 0.1478718
## Run 280 stress 0.05683281
## Run 281 stress 0.05192134
## Run 282 stress 0.05434414
## Run 283 stress 0.0543441
## Run 284 stress 0.05120132
## Run 285 stress 0.05794553
## Run 286 stress 0.04976574
## Run 287 stress 0.05192132
## Run 288 stress 0.04733847
## ... Procrustes: rmse 0.05311171 max resid 0.1479112
## Run 289 stress 0.05794556
## Run 290 stress 0.05270349
## Run 291 stress 0.05794559
## Run 292 stress 0.05593305
## Run 293 stress 0.05165244
## Run 294 stress 0.04704142
## ... Procrustes: rmse 7.742848e-06 max resid 1.815446e-05
## ... Similar to previous best
## Run 295 stress 0.05438256
## Run 296 stress 0.0628727
## Run 297 stress 0.0569251
## Run 298 stress 0.05165244
## Run 299 stress 0.06021732
## Run 300 stress 0.05438252
## Run 301 stress 0.04733855
## ... Procrustes: rmse 0.0531289 max resid 0.1477777
## Run 302 stress 0.05120101
## Run 303 stress 0.04704144
## ... Procrustes: rmse 4.360024e-05 max resid 8.505314e-05
## ... Similar to previous best
## Run 304 stress 0.0535686
## Run 305 stress 0.04976562
## Run 306 stress 0.05438252
## Run 307 stress 0.05438262
## Run 308 stress 0.05692507
## Run 309 stress 0.05165248
## Run 310 stress 0.05356859
## Run 311 stress 0.05165244
## Run 312 stress 0.0602173
## Run 313 stress 0.0473385
## ... Procrustes: rmse 0.05310294 max resid 0.1479574
## Run 314 stress 0.05192136
## Run 315 stress 0.05794562
## Run 316 stress 0.04976577
## Run 317 stress 0.05356859
## Run 318 stress 0.0583246
## Run 319 stress 0.0473385
## ... Procrustes: rmse 0.05310341 max resid 0.1479589
## Run 320 stress 0.0543441
## Run 321 stress 0.05440161
## Run 322 stress 0.04704142
## ... Procrustes: rmse 5.536634e-06 max resid 1.147013e-05
## ... Similar to previous best
## Run 323 stress 0.04733851
## ... Procrustes: rmse 0.05310171 max resid 0.1479702
## Run 324 stress 0.05438257
## Run 325 stress 0.04733854
## ... Procrustes: rmse 0.05309881 max resid 0.1479816
## Run 326 stress 0.05502839
## Run 327 stress 0.04704142
## ... Procrustes: rmse 5.996537e-06 max resid 9.444496e-06
## ... Similar to previous best
## Run 328 stress 0.04733849
## ... Procrustes: rmse 0.05310395 max resid 0.1479553
## Run 329 stress 0.05440158
## Run 330 stress 0.06021729
## Run 331 stress 0.06696171
## Run 332 stress 0.05820957
## Run 333 stress 0.05165243
## Run 334 stress 0.05120145
## Run 335 stress 0.05368172
## Run 336 stress 0.0543441
## Run 337 stress 0.04704142
## ... Procrustes: rmse 2.257814e-05 max resid 3.6352e-05
## ... Similar to previous best
## Run 338 stress 0.05434414
## Run 339 stress 0.05165244
## Run 340 stress 0.05356861
## Run 341 stress 0.05440158
## Run 342 stress 0.05683291
## Run 343 stress 0.05593291
## Run 344 stress 0.0528927
## Run 345 stress 0.05794558
## Run 346 stress 0.05794561
## Run 347 stress 0.0527035
## Run 348 stress 0.05165245
## Run 349 stress 0.05692532
## Run 350 stress 0.06021729
## Run 351 stress 0.05289269
## Run 352 stress 0.05368171
## Run 353 stress 0.0544016
## Run 354 stress 0.04733846
## ... Procrustes: rmse 0.05312075 max resid 0.1478567
## Run 355 stress 0.05289268
## Run 356 stress 0.05794556
## Run 357 stress 0.05926582
## Run 358 stress 0.0536817
## Run 359 stress 0.05440161
## Run 360 stress 0.04976576
## Run 361 stress 0.04704142
## ... Procrustes: rmse 1.381479e-05 max resid 2.738537e-05
## ... Similar to previous best
## Run 362 stress 0.05438256
## Run 363 stress 0.0512279
## Run 364 stress 0.04976579
## Run 365 stress 0.05440171
## Run 366 stress 0.04704142
## ... Procrustes: rmse 3.863332e-06 max resid 6.535122e-06
## ... Similar to previous best
## Run 367 stress 0.05356861
## Run 368 stress 0.05270351
## Run 369 stress 0.05120122
## Run 370 stress 0.05289269
## Run 371 stress 0.0497656
## Run 372 stress 0.04733846
## ... Procrustes: rmse 0.05310901 max resid 0.1479164
## Run 373 stress 0.04976565
## Run 374 stress 0.06901331
## Run 375 stress 0.0543441
## Run 376 stress 0.05820931
## Run 377 stress 0.0527035
## Run 378 stress 0.05165246
## Run 379 stress 0.05692524
## Run 380 stress 0.04733848
## ... Procrustes: rmse 0.05310768 max resid 0.1479343
## Run 381 stress 0.04704145
## ... Procrustes: rmse 7.189678e-05 max resid 0.00018073
## ... Similar to previous best
## Run 382 stress 0.04976566
## Run 383 stress 0.06374902
## Run 384 stress 0.05270349
## Run 385 stress 0.04733851
## ... Procrustes: rmse 0.05310244 max resid 0.147966
## Run 386 stress 0.05850689
## Run 387 stress 0.05165244
## Run 388 stress 0.05670742
## Run 389 stress 0.04976567
## Run 390 stress 0.05434417
## Run 391 stress 0.04704142
## ... Procrustes: rmse 6.622866e-06 max resid 1.165996e-05
## ... Similar to previous best
## Run 392 stress 0.04704142
## ... Procrustes: rmse 1.922331e-05 max resid 4.87719e-05
## ... Similar to previous best
## Run 393 stress 0.06492703
## Run 394 stress 0.04976571
## Run 395 stress 0.05593293
## Run 396 stress 0.0512014
## Run 397 stress 0.05270349
## Run 398 stress 0.05733805
## Run 399 stress 0.04976569
## Run 400 stress 0.05733799
## Run 401 stress 0.05289268
## Run 402 stress 0.05120163
## Run 403 stress 0.05683307
## Run 404 stress 0.04976565
## Run 405 stress 0.05192135
## Run 406 stress 0.05438259
## Run 407 stress 0.05502839
## Run 408 stress 0.05692504
## Run 409 stress 0.05368172
## Run 410 stress 0.05289268
## Run 411 stress 0.05120106
## Run 412 stress 0.04733849
## ... Procrustes: rmse 0.05310456 max resid 0.1479534
## Run 413 stress 0.05356862
## Run 414 stress 0.04733845
## ... Procrustes: rmse 0.05311238 max resid 0.1479085
## Run 415 stress 0.05165246
## Run 416 stress 0.05692516
## Run 417 stress 0.05593306
## Run 418 stress 0.05820954
## Run 419 stress 0.05683303
## Run 420 stress 0.05165245
## Run 421 stress 0.06492713
## Run 422 stress 0.04733855
## ... Procrustes: rmse 0.05312905 max resid 0.1477763
## Run 423 stress 0.04733855
## ... Procrustes: rmse 0.05310098 max resid 0.1479816
## Run 424 stress 0.04704143
## ... Procrustes: rmse 3.283998e-05 max resid 5.449192e-05
## ... Similar to previous best
## Run 425 stress 0.06492706
## Run 426 stress 0.04976573
## Run 427 stress 0.05165247
## Run 428 stress 0.05794558
## Run 429 stress 0.05502839
## Run 430 stress 0.04976562
## Run 431 stress 0.04976567
## Run 432 stress 0.05670743
## Run 433 stress 0.06492703
## Run 434 stress 0.04704142
## ... Procrustes: rmse 7.715039e-06 max resid 1.244825e-05
## ... Similar to previous best
## Run 435 stress 0.04976572
## Run 436 stress 0.04733845
## ... Procrustes: rmse 0.05311173 max resid 0.1479118
## Run 437 stress 0.05692516
## Run 438 stress 0.05438253
## Run 439 stress 0.04976567
## Run 440 stress 0.05438253
## Run 441 stress 0.05794561
## Run 442 stress 0.04976567
## Run 443 stress 0.04704142
## ... Procrustes: rmse 1.20102e-05 max resid 1.950588e-05
## ... Similar to previous best
## Run 444 stress 0.05683273
## Run 445 stress 0.05670746
## Run 446 stress 0.0527035
## Run 447 stress 0.04733851
## ... Procrustes: rmse 0.05312376 max resid 0.1477947
## Run 448 stress 0.05683291
## Run 449 stress 0.04704142
## ... Procrustes: rmse 9.491116e-06 max resid 1.502651e-05
## ... Similar to previous best
## Run 450 stress 0.05289268
## Run 451 stress 0.04976568
## Run 452 stress 0.04733849
## ... Procrustes: rmse 0.05310556 max resid 0.1479472
## Run 453 stress 0.04976567
## Run 454 stress 0.0543441
## Run 455 stress 0.04704142
## ... Procrustes: rmse 1.79855e-05 max resid 4.152199e-05
## ... Similar to previous best
## Run 456 stress 0.05120142
## Run 457 stress 0.05120085
## Run 458 stress 0.06374908
## Run 459 stress 0.04976567
## Run 460 stress 0.05692525
## Run 461 stress 0.0536817
## Run 462 stress 0.04704143
## ... Procrustes: rmse 3.996028e-05 max resid 9.200864e-05
## ... Similar to previous best
## Run 463 stress 0.05670752
## Run 464 stress 0.05438258
## Run 465 stress 0.04704142
## ... Procrustes: rmse 5.262758e-06 max resid 1.148249e-05
## ... Similar to previous best
## Run 466 stress 0.04733855
## ... Procrustes: rmse 0.05309954 max resid 0.1479847
## Run 467 stress 0.04976574
## Run 468 stress 0.06767352
## Run 469 stress 0.05122779
## Run 470 stress 0.0473385
## ... Procrustes: rmse 0.05312558 max resid 0.1478095
## Run 471 stress 0.04976578
## Run 472 stress 0.05434411
## Run 473 stress 0.05605322
## Run 474 stress 0.05434412
## Run 475 stress 0.05967094
## Run 476 stress 0.04733851
## ... Procrustes: rmse 0.0531015 max resid 0.1479698
## Run 477 stress 0.05165245
## Run 478 stress 0.04976563
## Run 479 stress 0.05165245
## Run 480 stress 0.04733853
## ... Procrustes: rmse 0.05310031 max resid 0.1479804
## Run 481 stress 0.0544016
## Run 482 stress 0.04733857
## ... Procrustes: rmse 0.05309643 max resid 0.147997
## Run 483 stress 0.05438253
## Run 484 stress 0.0544016
## Run 485 stress 0.04976565
## Run 486 stress 0.05670747
## Run 487 stress 0.05794566
## Run 488 stress 0.05670742
## Run 489 stress 0.05438253
## Run 490 stress 0.04976568
## Run 491 stress 0.04733847
## ... Procrustes: rmse 0.05310721 max resid 0.1479381
## Run 492 stress 0.04704142
## ... Procrustes: rmse 1.405424e-05 max resid 3.454625e-05
## ... Similar to previous best
## Run 493 stress 0.04733853
## ... Procrustes: rmse 0.05309968 max resid 0.1479793
## Run 494 stress 0.04704143
## ... Procrustes: rmse 2.482727e-05 max resid 4.132775e-05
## ... Similar to previous best
## Run 495 stress 0.05438253
## Run 496 stress 0.05192132
## Run 497 stress 0.04733849
## ... Procrustes: rmse 0.0531207 max resid 0.1478581
## Run 498 stress 0.04704143
## ... Procrustes: rmse 3.457126e-05 max resid 6.135708e-05
## ... Similar to previous best
## Run 499 stress 0.05820942
## Run 500 stress 0.04976569
## *** Best solution repeated 40 timesDetermine stratification homogeneity using phylogenetic distances
We use betadisper to determine homogeneity of the phylogenetic distances based on the stratification category. Is the dispersion of phylogenetic distances similar within stratification categories?
### Stratification
pd_bd <- betadisper(pd_dist, stratification_group)
anova(pd_bd)## Analysis of Variance Table
##
## Response: Distances
## Df Sum Sq Mean Sq F value Pr(>F)
## Groups 2 0.041384 0.0206918 2.8636 0.08185 .
## Residuals 19 0.137291 0.0072258
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1permutest(pd_bd, pairwise = TRUE)##
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
##
## Response: Distances
## Df Sum Sq Mean Sq F N.Perm Pr(>F)
## Groups 2 0.041384 0.0206918 2.8636 999 0.075 .
## Residuals 19 0.137291 0.0072258
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
## Mixed Ocean Stratified
## Mixed 0.792000 0.037
## Ocean 0.785767 0.117
## Stratified 0.045423 0.120915(pd_bd.HSD <- TukeyHSD(pd_bd))## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## Ocean-Mixed 0.01016167 -0.1064651 0.12678849 0.9733893
## Stratified-Mixed -0.08541898 -0.1933944 0.02255647 0.1370417
## Stratified-Ocean -0.09558066 -0.2122075 0.02104616 0.1203813boxplot(pd_bd)
Determine stratification dissimilarity using phylogenetic distances
We use adonis to determine if dissimilarities of species phylogenetic distances by stratification categories are significant and how much of the variation is explained by phylogenetic dissimilarities.
### Stratification
pd_pms <- adonis2(pd_dist ~ env[-20,19], permutations = 999)
pd_pms## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
##
## adonis2(formula = pd_dist ~ env[-20, 19], permutations = 999)
## Df SumOfSqs R2 F Pr(>F)
## env[-20, 19] 2 1.8501 0.39099 6.0992 0.001 ***
## Residual 19 2.8817 0.60901
## Total 21 4.7317 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# By stratification
pd_pms_pair <- pairwise.adonis(pd_dist, env[-20,19], p.adjust.m = "bonferroni", perm = 999)
pd_pms_pair## pairs Df SumsOfSqs F.Model R2 p.value p.adjusted sig
## 1 Stratified vs Mixed 1 1.2941262 9.411578 0.4020053 0.002 0.006 *
## 2 Stratified vs Ocean 1 1.1732986 8.193920 0.4057617 0.002 0.006 *
## 3 Mixed vs Ocean 1 0.2549694 1.443238 0.1073579 0.122 0.366Envfit environmental influence on phylogenetic distances
We use envfit to determine significantly correlated environmental variables to our phylogenetic NMDS. We will use these results, if significant, in our figure.
### Environmental
# All sites for figure
pde_ef <- envfit(pde_NMDS, env[-c(9,16,18,20),c(34,36)], permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pde_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## S 0.96421 0.26514 0.7072 0.012 *
## pH 0.99017 -0.13990 0.8530 0.001 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999pde_efp <- p.adjust.envfit(pde_ef)## Adjustment of significance by bonferroni methodpde_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## S 0.96421 0.26514 0.7072 0.024 *
## pH 0.99017 -0.13990 0.8530 0.002 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# All sites by stratification
pdea_ef <- envfit(pde_NMDS, env[-c(9,16,18,20),c(2,6,8,10)], permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pdea_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.73732 -0.67555 0.0772 0.632
## salinity_median 0.96421 0.26514 0.7072 0.014 *
## oxygen_median 0.56896 -0.82236 0.6630 0.188
## pH_median 0.99017 -0.13990 0.8530 0.001 ***
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999pdea_efp <- p.adjust.envfit(pdea_ef)## Adjustment of significance by bonferroni methodpdea_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.73732 -0.67555 0.0772 1.000
## salinity_median 0.96421 0.26514 0.7072 0.056 .
## oxygen_median 0.56896 -0.82236 0.6630 0.752
## pH_median 0.99017 -0.13990 0.8530 0.004 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
pdems_ef <- envfit(pdems_NMDS, env[c(1:6,8,10,12:15,17,21:23),c(6,10)], permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdems_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## salinity_median 0.86008 0.51016 0.6978 0.016 *
## pH_median 0.99083 0.13515 0.8247 0.004 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999pdems_efp <- p.adjust.envfit(pdems_ef)## Adjustment of significance by bonferroni methodpdems_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## salinity_median 0.86008 0.51016 0.6978 0.032 *
## pH_median 0.99083 0.13515 0.8247 0.008 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
pdeom_ef <- envfit(pdeom_NMDS, env[c(3,6:8,10:11,13:15,19,23),c(8,10)], permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
pdeom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## oxygen_median 0.93268 0.36070 0.7964 0.016 *
## pH_median 0.95281 -0.30357 0.7303 0.015 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999pdeom_efp <- p.adjust.envfit(pdeom_ef)## Adjustment of significance by bonferroni methodpdeom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## oxygen_median 0.93268 0.36070 0.7964 0.032 *
## pH_median 0.95281 -0.30357 0.7303 0.030 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
pdeso_ef <- envfit(pdeso_NMDS, env[c(1:2,4,5,7,11:12,17,19,21:22),c(2,6,8,10)], permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
pdeso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.0005766 1.0000000 0.0393 0.748
## salinity_median 0.0029113 -1.0000000 0.4885 0.732
## oxygen_median 0.0028004 -1.0000000 0.7208 0.551
## pH_median 0.0077581 -0.9999700 0.6695 0.848
## Blocks: strata
## Permutation: free
## Number of permutations: 999pdeso_efp <- p.adjust.envfit(pdeso_ef)## Adjustment of significance by bonferroni methodpdeso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## temperature_median -0.0005766 1.0000000 0.0393 1
## salinity_median 0.0029113 -1.0000000 0.4885 1
## oxygen_median 0.0028004 -1.0000000 0.7208 1
## pH_median 0.0077581 -0.9999700 0.6695 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes
pds_ef <- envfit(pds_NMDS, env[c(1:2,4,5,12,17,21:22),c(8)], permutations = 999, na.rm = TRUE)
pds_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.83740 0.54659 0.745 0.04 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999pds_efp <- p.adjust.envfit(pds_ef)## Adjustment of significance by bonferroni methodpds_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] 0.83740 0.54659 0.745 0.04 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Permutation: free
## Number of permutations: 999### Biogeographic
# All sites for figure
pdb_ef <- envfit(pdb_NMDS, env[-c(8,20),c(40)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
pdb_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] -0.9217 0.3879 0.5898 0.05994 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdb_efp <- p.adjust.envfit(pdb_ef)## Adjustment of significance by bonferroni methodpdb_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] -0.9217 0.3879 0.5898 0.05994 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
pdba_ef <- envfit(pdb_NMDS, env[-c(8,20),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[-c(8,20),19])
pdba_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.30704 -0.95170 0.2742 0.14086
## volume_m3 0.29232 -0.95632 0.2674 0.14286
## surface_area_m2 0.24090 -0.97055 0.3746 0.17383
## distance_to_ocean_min_m -0.92170 0.38790 0.5898 0.05195 .
## distance_to_ocean_mean_m -0.76136 0.64833 0.5394 0.46054
## distance_to_ocean_median_m -0.76959 0.63854 0.5307 0.47552
## tidal_lag_time_minutes -0.63885 0.76933 0.6134 0.33367
## tidal_efficiency 0.63776 -0.77023 0.6175 0.23976
## perimeter_fromSat 0.31940 -0.94762 0.2854 0.41658
## max_depth -0.30952 -0.95089 0.0695 0.96803
## logArea 0.24319 -0.96998 0.1775 0.41259
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdba_efp <- p.adjust.envfit(pdba_ef)## Adjustment of significance by bonferroni methodpdba_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.30704 -0.95170 0.2742 1.0000
## volume_m3 0.29232 -0.95632 0.2674 1.0000
## surface_area_m2 0.24090 -0.97055 0.3746 1.0000
## distance_to_ocean_min_m -0.92170 0.38790 0.5898 0.5714
## distance_to_ocean_mean_m -0.76136 0.64833 0.5394 1.0000
## distance_to_ocean_median_m -0.76959 0.63854 0.5307 1.0000
## tidal_lag_time_minutes -0.63885 0.76933 0.6134 1.0000
## tidal_efficiency 0.63776 -0.77023 0.6175 1.0000
## perimeter_fromSat 0.31940 -0.94762 0.2854 1.0000
## max_depth -0.30952 -0.95089 0.0695 1.0000
## logArea 0.24319 -0.96998 0.1775 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
pdbms_ef <- envfit(pdbms_NMDS, env[c(1:6,10,12:15,17,21:23),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
pdbms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.06129 0.99812 0.0721 0.81019
## volume_m3 -0.49384 0.86956 0.1344 0.95804
## surface_area_m2 -0.34955 0.93692 0.1072 0.92308
## distance_to_ocean_min_m -0.83989 0.54276 0.5146 0.08192 .
## distance_to_ocean_mean_m -0.59315 0.80509 0.4516 0.38561
## distance_to_ocean_median_m -0.58208 0.81313 0.4509 0.36563
## tidal_lag_time_minutes -0.39659 0.91799 0.6069 0.19780
## tidal_efficiency 0.40487 -0.91437 0.6010 0.17582
## perimeter_fromSat -0.09999 0.99499 0.0799 0.78721
## max_depth -0.56723 -0.82356 0.1064 0.95704
## logArea -0.52597 0.85050 0.0070 0.99500
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdbms_efp <- p.adjust.envfit(pdbms_ef)## Adjustment of significance by bonferroni methodpdbms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline -0.06129 0.99812 0.0721 1.0000
## volume_m3 -0.49384 0.86956 0.1344 1.0000
## surface_area_m2 -0.34955 0.93692 0.1072 1.0000
## distance_to_ocean_min_m -0.83989 0.54276 0.5146 0.9011
## distance_to_ocean_mean_m -0.59315 0.80509 0.4516 1.0000
## distance_to_ocean_median_m -0.58208 0.81313 0.4509 1.0000
## tidal_lag_time_minutes -0.39659 0.91799 0.6069 1.0000
## tidal_efficiency 0.40487 -0.91437 0.6010 1.0000
## perimeter_fromSat -0.09999 0.99499 0.0799 1.0000
## max_depth -0.56723 -0.82356 0.1064 1.0000
## logArea -0.52597 0.85050 0.0070 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
pdbom_ef <- envfit(pdbom_NMDS, env[c(3,6:7,9:11,13:16,18:19,23),c(28,31)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
pdbom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## tidal_lag_time_minutes -0.34048 -0.94025 0.5044 0.017982 *
## max_depth 0.87692 -0.48064 0.6324 0.004995 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdbom_efp <- p.adjust.envfit(pdbom_ef)## Adjustment of significance by bonferroni methodpdbom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## tidal_lag_time_minutes -0.34048 -0.94025 0.5044 0.03596 *
## max_depth 0.87692 -0.48064 0.6324 0.00999 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
pdbso_ef <- envfit(pdbso_NMDS, env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(22:32)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdbso_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.32434 0.94594 0.4850 0.03497 *
## volume_m3 0.31780 0.94816 0.4742 0.04695 *
## surface_area_m2 0.30238 0.95319 0.6099 0.04396 *
## distance_to_ocean_min_m -0.99834 0.05762 0.6213 0.28072
## distance_to_ocean_mean_m -0.89864 0.43868 0.6226 0.59740
## distance_to_ocean_median_m -0.87457 0.48490 0.6154 0.59041
## tidal_lag_time_minutes -0.99917 0.04072 0.7125 0.92907
## tidal_efficiency 0.93914 -0.34354 0.7835 0.59840
## perimeter_fromSat 0.38918 0.92116 0.5288 0.12488
## max_depth -0.16213 0.98677 0.1849 0.55944
## logArea 0.26902 0.96314 0.4195 0.11688
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdbso_efp <- p.adjust.envfit(pdbso_ef)## Adjustment of significance by bonferroni methodpdbso_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## volume_m3_w_chemocline 0.32434 0.94594 0.4850 0.3846
## volume_m3 0.31780 0.94816 0.4742 0.5165
## surface_area_m2 0.30238 0.95319 0.6099 0.4835
## distance_to_ocean_min_m -0.99834 0.05762 0.6213 1.0000
## distance_to_ocean_mean_m -0.89864 0.43868 0.6226 1.0000
## distance_to_ocean_median_m -0.87457 0.48490 0.6154 1.0000
## tidal_lag_time_minutes -0.99917 0.04072 0.7125 1.0000
## tidal_efficiency 0.93914 -0.34354 0.7835 1.0000
## perimeter_fromSat 0.38918 0.92116 0.5288 1.0000
## max_depth -0.16213 0.98677 0.1849 1.0000
## logArea 0.26902 0.96314 0.4195 1.0000
## Blocks: strata
## Permutation: free
## Number of permutations: 1000### Traits
# All sites for figure
pdt_ef <- envfit(pd_NMDS, FD_total_env[-20,c(58,64)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
pdt_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## T -0.71489 0.69924 0.7028 0.003996 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## EC1b -0.3816 -0.0269
## EC2g -0.4873 -0.0630
## EC3n 0.0965 0.0100
##
## Goodness of fit:
## r2 Pr(>r)
## EC 0.432 0.003996 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdt_efp <- p.adjust.envfit(pdt_ef)## Adjustment of significance by bonferroni methodpdt_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## T -0.71489 0.69924 0.7028 0.007992 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## EC1b -0.3816 -0.0269
## EC2g -0.4873 -0.0630
## EC3n 0.0965 0.0100
##
## Goodness of fit:
## r2 Pr(>r)
## EC 0.432 0.007992 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
pdta_ef <- envfit(pd_NMDS, FD_total_env[-20,c(6:22)], permutations = 1000, na.rm = TRUE, strata = env[-20,19])
pdta_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.19595 0.98061 0.2103 0.058941 .
## Troph -0.71489 0.69924 0.7028 0.005994 **
## DepthMin -0.10558 -0.99441 0.0497 0.173826
## DepthMax 0.74849 0.66314 0.2306 0.180819
## TempPrefMin 0.56814 -0.82293 0.1991 0.377622
## TempPrefMax -0.39506 -0.91865 0.0052 0.810190
## Weight 0.08261 0.99658 0.0847 0.208791
## CaudalFinLength -0.22745 0.97379 0.0329 0.436563
## DorsalSpinesMean 0.97324 -0.22979 0.5299 0.038961 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.0491 -0.0887
## BodyShapeI3f 0.1007 0.0309
## BodyShapeI4e -0.4143 -0.0493
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -0.3899 -0.0284
## OperculumPresentyes 0.0866 0.0063
## FeedingPathb 0.0382 0.0027
## FeedingPathp -0.3816 -0.0269
## RepGuild11b -0.3816 -0.0269
## RepGuild12g -0.4873 -0.0630
## RepGuild13n 0.0965 0.0100
## RepGuild22eb -0.3955 -0.0179
## RepGuild23n -0.4873 -0.0630
## RepGuild26s 0.0721 0.0076
## ParentalCare3p -0.3755 -0.0197
## ParentalCare4n 0.1408 0.0074
## WaterPref1s 0.1177 0.0096
## WaterPref3a -0.4003 -0.0327
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4083 0.057942 .
## DemersPelag 0.0000 1.000000
## OperculumPresent 0.3415 0.146853
## FeedingPath 0.1471 0.376623
## RepGuild1 0.4320 0.005994 **
## RepGuild2 0.3380 0.006993 **
## ParentalCare 0.5331 0.129870
## WaterPref 0.4770 0.048951 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdta_efp <- p.adjust.envfit(pdta_ef)## Adjustment of significance by bonferroni methodpdta_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.19595 0.98061 0.2103 1.0000
## Troph -0.71489 0.69924 0.7028 0.1019
## DepthMin -0.10558 -0.99441 0.0497 1.0000
## DepthMax 0.74849 0.66314 0.2306 1.0000
## TempPrefMin 0.56814 -0.82293 0.1991 1.0000
## TempPrefMax -0.39506 -0.91865 0.0052 1.0000
## Weight 0.08261 0.99658 0.0847 1.0000
## CaudalFinLength -0.22745 0.97379 0.0329 1.0000
## DorsalSpinesMean 0.97324 -0.22979 0.5299 0.6623
## Blocks: strata
## Permutation: free
## Number of permutations: 1000
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.0491 -0.0887
## BodyShapeI3f 0.1007 0.0309
## BodyShapeI4e -0.4143 -0.0493
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -0.3899 -0.0284
## OperculumPresentyes 0.0866 0.0063
## FeedingPathb 0.0382 0.0027
## FeedingPathp -0.3816 -0.0269
## RepGuild11b -0.3816 -0.0269
## RepGuild12g -0.4873 -0.0630
## RepGuild13n 0.0965 0.0100
## RepGuild22eb -0.3955 -0.0179
## RepGuild23n -0.4873 -0.0630
## RepGuild26s 0.0721 0.0076
## ParentalCare3p -0.3755 -0.0197
## ParentalCare4n 0.1408 0.0074
## WaterPref1s 0.1177 0.0096
## WaterPref3a -0.4003 -0.0327
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4083 0.9850
## DemersPelag 0.0000 1.0000
## OperculumPresent 0.3415 1.0000
## FeedingPath 0.1471 1.0000
## RepGuild1 0.4320 0.1019
## RepGuild2 0.3380 0.1189
## ParentalCare 0.5331 1.0000
## WaterPref 0.4770 0.8322
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Mixed and stratified lakes
pdtms_ef <- envfit(pdms_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(18,19)], permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_ef##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.3099 -0.0094
## RepGuild12g -0.4096 -0.0754
## RepGuild13n 0.1199 0.0141
## RepGuild22eb -0.3167 -0.0114
## RepGuild23n -0.4096 -0.0754
## RepGuild26s 0.0874 0.0125
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.4570 0.002997 **
## RepGuild2 0.3511 0.014985 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdtms_efp <- p.adjust.envfit(pdtms_ef)## Adjustment of significance by bonferroni methodpdtms_efp##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.3099 -0.0094
## RepGuild12g -0.4096 -0.0754
## RepGuild13n 0.1199 0.0141
## RepGuild22eb -0.3167 -0.0114
## RepGuild23n -0.4096 -0.0754
## RepGuild26s 0.0874 0.0125
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.4570 0.005994 **
## RepGuild2 0.3511 0.029970 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
pdtom_ef <- envfit(pdom_NMDS, FD_total_env[c(3,6:11,13:16,18:19,23),c(9)], permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
pdtom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] -0.67324 0.73943 0.56 0.007992 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdtom_efp <- p.adjust.envfit(pdtom_ef)## Adjustment of significance by bonferroni methodpdtom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## [1,] -0.67324 0.73943 0.56 0.007992 **
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
pdtso_ef <- envfit(pdso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(18,19)], permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_ef##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.2537 -0.0082
## RepGuild12g -0.3650 0.0291
## RepGuild13n 0.1237 -0.0042
## RepGuild22eb -0.2680 -0.0175
## RepGuild23n -0.3650 0.0291
## RepGuild26s 0.0907 -0.0037
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.4085 0.005994 **
## RepGuild2 0.3199 0.012987 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000pdtso_efp <- p.adjust.envfit(pdtso_ef)## Adjustment of significance by bonferroni methodpdtso_efp##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## RepGuild11b -0.2537 -0.0082
## RepGuild12g -0.3650 0.0291
## RepGuild13n 0.1237 -0.0042
## RepGuild22eb -0.2680 -0.0175
## RepGuild23n -0.3650 0.0291
## RepGuild26s 0.0907 -0.0037
##
## Goodness of fit:
## r2 Pr(>r)
## RepGuild1 0.4085 0.01199 *
## RepGuild2 0.3199 0.02597 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000Phylogenetic mantel tests
We used mantel tests to determine significance between the phylogenetic and environmental distance matrices.
### Environmental
# All sites
enve_dist_s <- dist(scaled_env[-c(9,16,18,20),c(2)], method = "euclidean")
pdea_mant_s <- mantel(pde_dist, enve_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pdea_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pde_dist, ydis = enve_dist_s, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5397
## Significance: 0.006
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.445 0.479 0.500 0.523
## Blocks: strata
## Permutation: free
## Number of permutations: 999enve_dist_p <- dist(scaled_env[-c(9,16,18,20),c(4)], method = "euclidean")
pdea_mant_p <- mantel(pde_dist, enve_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
pdea_mant_p##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pde_dist, ydis = enve_dist_p, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.7157
## Significance: 0.001
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.513 0.553 0.577 0.610
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
pdea_mant_pv <- rbind(pdea_mant_s$signif, pdea_mant_p$signif)
pdea_mant_pv <- pdea_mant_pv[,1]
pdea_mant_pv <- p.adjust(pdea_mant_pv, method = "bonferroni")
pdea_mant_pv## [1] 0.012 0.002# Mixed and stratified lakes
envems_dist_s <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2)], method = "euclidean")
pdems_mant_s <- mantel(pdems_dist, envems_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdems_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdems_dist, ydis = envems_dist_s, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4842
## Significance: 0.008
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.396 0.420 0.452 0.473
## Blocks: strata
## Permutation: free
## Number of permutations: 999envems_dist_p <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(4)], method = "euclidean")
pdems_mant_p <- mantel(pdems_dist, envems_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdems_mant_p##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdems_dist, ydis = envems_dist_p, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6732
## Significance: 0.002
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.436 0.473 0.512 0.538
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
pdems_mant_pv <- rbind(pdems_mant_s$signif, pdems_mant_p$signif)
pdems_mant_pv <- pdems_mant_pv[,1]
pdems_mant_pv <- p.adjust(pdems_mant_pv, method = "bonferroni")
pdems_mant_pv## [1] 0.016 0.004# Ocean sites and mixed lakes
enveom_dist_s <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(2)], method = "euclidean")
pdeom_mant_s <- mantel(pdeom_dist, enveom_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
pdeom_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdeom_dist, ydis = enveom_dist_s, method = "spearman", permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15, 19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5084
## Significance: 0.015
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.309 0.386 0.462 0.520
## Blocks: strata
## Permutation: free
## Number of permutations: 999enveom_dist_p <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(4)], method = "euclidean")
pdeom_mant_p <- mantel(pdeom_dist, enveom_dist_p, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
pdeom_mant_p##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdeom_dist, ydis = enveom_dist_p, method = "spearman", permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15, 19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4535
## Significance: 0.016
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.272 0.349 0.407 0.502
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
pdeom_mant_pv <- rbind(pdeom_mant_s$signif, pdeom_mant_p$signif)
pdeom_mant_pv <- pdeom_mant_pv[,1]
pdeom_mant_pv <- p.adjust(pdeom_mant_pv, method = "bonferroni")
pdeom_mant_pv## [1] 0.030 0.032# Stratified lakes and ocean sites
enveso_dist_s <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2)], method = "euclidean")
pdeso_mant_s <- mantel(pdeso_dist, enveso_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
pdeso_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdeso_dist, ydis = enveso_dist_s, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17, 19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5084
## Significance: 0.025
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.421 0.467 0.502 0.526
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes
envs_dist <- dist(scaled_env[c(1:2,4,5,12,17,21:22),c(1:15)], method = "euclidean")
pds_mant <- mantel(pds_dist, envs_dist, method = "spearman", permutations = 999, na.rm = TRUE)
pds_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pds_dist, ydis = envs_dist, method = "spearman", permutations = 999, na.rm = TRUE)
##
## Mantel statistic r: 0.1308
## Significance: 0.275
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.328 0.389 0.475 0.558
## Permutation: free
## Number of permutations: 999### Biogeographic
# All sites
envb_dist <- dist(scaled_env[-c(8,20),c(5:15)], method = "euclidean")
pdb_mant <- mantel(pdb_dist, envb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
pdb_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdb_dist, ydis = envb_dist, method = "spearman", permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3595
## Significance: 0.316
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.408 0.431 0.446 0.481
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:15)], method = "euclidean")
pdbms_mant <- mantel(pdbms_dist, envbms_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
pdbms_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdbms_dist, ydis = envbms_dist, method = "spearman", permutations = 1000, strata = env[c(1:6, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2029
## Significance: 0.58242
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.372 0.420 0.447 0.503
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(6)], method = "euclidean")
pdbom_mant <- mantel(pdbom_dist, envbom_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
pdbom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdbom_dist, ydis = envbom_dist, method = "spearman", permutations = 1000, strata = env[c(3, 6:7, 9:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2984
## Significance: 0.033966
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.236 0.271 0.310 0.350
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:15)], method = "euclidean")
pdbso_mant <- mantel(pdbso_dist, envbso_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdbso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdbso_dist, ydis = envbso_dist, method = "spearman", permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6341
## Significance: 0.23676
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.665 0.689 0.706 0.727
## Blocks: strata
## Permutation: free
## Number of permutations: 1000### Traits
# All sites 1,3,12:13,14:15
FDpd_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(1)]))
pdt_mant_s <- mantel(pd_dist, FDpd_dist_s, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_s, method = "spearman", permutations = 999, strata = env[-c(20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4615
## Significance: 0.001
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.313 0.348 0.372 0.401
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpd_dist_t <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(3)]))
pdt_mant_t <- mantel(pd_dist, FDpd_dist_t, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_t##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_t, method = "spearman", permutations = 999, strata = env[-c(20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.4874
## Significance: 0.011
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.397 0.427 0.459 0.486
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpd_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(12:13)]))
pdt_mant_ec <- mantel(pd_dist, FDpd_dist_ec, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_ec##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_ec, method = "spearman", permutations = 999, strata = env[-c(20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3755
## Significance: 0.004
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.264 0.297 0.328 0.351
## Blocks: strata
## Permutation: free
## Number of permutations: 999FDpd_dist_es <- gowdis(as.data.frame(scaled_FD_total_env[-c(20),c(14:15)]))
pdt_mant_es <- mantel(pd_dist, FDpd_dist_es, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(20),19])
pdt_mant_es##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pd_dist, ydis = FDpd_dist_es, method = "spearman", permutations = 999, strata = env[-c(20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3137
## Significance: 0.005
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.228 0.262 0.293 0.299
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjust p-values
pdt_mant_pv <- rbind(pdt_mant_s$signif, pdt_mant_t$signif, pdt_mant_ec$signif, pdt_mant_es$signif)
pdt_mant_pv <- pdt_mant_pv[,1]
pdt_mant_pv <- p.adjust(pdt_mant_pv, method = "bonferroni")
pdt_mant_pv## [1] 0.004 0.044 0.016 0.020# Mixed and stratified lakes 1,12:13,14:15
FDpdms_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1)]))
pdtms_mant_s <- mantel(pdms_dist, FDpdms_dist_s, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdms_dist, ydis = FDpdms_dist_s, method = "spearman", permutations = 1000, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3773
## Significance: 0.00999
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.250 0.294 0.326 0.365
## Blocks: strata
## Permutation: free
## Number of permutations: 1000FDpdms_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(12:13)]))
pdtms_mant_ec <- mantel(pdms_dist, FDpdms_dist_ec, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_mant_ec##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdms_dist, ydis = FDpdms_dist_ec, method = "spearman", permutations = 1000, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2809
## Significance: 0.001998
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.136 0.176 0.204 0.236
## Blocks: strata
## Permutation: free
## Number of permutations: 1000FDpdms_dist_es <- gowdis(as.data.frame(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(14:15)]))
pdtms_mant_es <- mantel(pdms_dist, FDpdms_dist_es, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
pdtms_mant_es##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdms_dist, ydis = FDpdms_dist_es, method = "spearman", permutations = 1000, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2143
## Significance: 0.008991
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0845 0.1174 0.1619 0.1947
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Adjust p-values
pdtms_mant_pv <- rbind(pdtms_mant_s$signif, pdtms_mant_ec$signif, pdtms_mant_es$signif)
pdtms_mant_pv <- pdtms_mant_pv[,1]
pdtms_mant_pv <- p.adjust(pdtms_mant_pv, method = "bonferroni")
pdtms_mant_pv## [1] 0.029970030 0.005994006 0.026973027# Ocean sites and mixed lakes 1,2,6
FDpdom_dist_s <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(1)]))
pdtom_mant_s <- mantel(pdom_dist, FDpdom_dist_s, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
pdtom_mant_s##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdom_dist, ydis = FDpdom_dist_s, method = "spearman", permutations = 1000, strata = env[c(3, 6:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3449
## Significance: 0.006993
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.143 0.201 0.247 0.306
## Blocks: strata
## Permutation: free
## Number of permutations: 1000FDpdom_dist_l <- gowdis(as.data.frame(scaled_FD_total_env[c(3,6:11,13:16,18:19,23),c(2)]))
pdtom_mant_l <- mantel(pdom_dist, FDpdom_dist_l, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:11,13:16,18:19,23),19])
pdtom_mant_l##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdom_dist, ydis = FDpdom_dist_l, method = "spearman", permutations = 1000, strata = env[c(3, 6:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2589
## Significance: 0.018981
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.116 0.171 0.233 0.295
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Adjust p-values
pdtom_mant_pv <- rbind(pdtom_mant_s$signif, pdtom_mant_l$signif)
pdtom_mant_pv <- pdtom_mant_pv[,1]
pdtom_mant_pv <- p.adjust(pdtom_mant_pv, method = "bonferroni")
pdtom_mant_pv## [1] 0.01398601 0.03796204# Stratified lakes and ocean sites 1,3,4,7,12:13,14:15
FDpdso_dist_dmin <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(4)]))
pdtso_mant_dmin <- mantel(pdso_dist, FDpdso_dist_dmin, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_dmin##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_dmin, method = "spearman", permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.6478
## Significance: 0.000999
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.507 0.526 0.547 0.565
## Blocks: strata
## Permutation: free
## Number of permutations: 1000FDpdso_dist_tmax <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(7)]))
pdtso_mant_tmax <- mantel(pdso_dist, FDpdso_dist_tmax, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_tmax##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_tmax, method = "spearman", permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.117
## Significance: 0.001998
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0060 0.0312 0.0505 0.0779
## Blocks: strata
## Permutation: free
## Number of permutations: 1000FDpdso_dist_ec <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(12:13)]))
pdtso_mant_ec <- mantel(pdso_dist, FDpdso_dist_ec, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_ec##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_ec, method = "spearman", permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1961
## Significance: 0.003996
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0679 0.0948 0.1257 0.1431
## Blocks: strata
## Permutation: free
## Number of permutations: 1000FDpdso_dist_es <- gowdis(as.data.frame(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(14:15)]))
pdtso_mant_es <- mantel(pdso_dist, FDpdso_dist_es, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
pdtso_mant_es##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = pdso_dist, ydis = FDpdso_dist_es, method = "spearman", permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1341
## Significance: 0.00999
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0176 0.0787 0.0821 0.1081
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Adjust p-values
pdtso_mant_pv <- rbind(pdtso_mant_dmin$signif, pdtso_mant_tmax$signif, pdtso_mant_ec$signif, pdtso_mant_es$signif)
pdtso_mant_pv <- pdtso_mant_pv[,1]
pdtso_mant_pv <- p.adjust(pdtso_mant_pv, method = "bonferroni")
pdtso_mant_pv## [1] 0.003996004 0.007992008 0.015984016 0.039960040Plot phylogenetic NMDS and envfit results
Includes a plot of correlated environmental variables
pd_NMDS_data.scores <- as.data.frame(scores(pd_NMDS))
pd_NMDS_data.scores$Stratification <- env[-c(20),19]
pd_NMDS_data.scores$Lakes <- env[-c(20),1]
pd_NMDS_data.scores$Stratification <- factor(pd_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))
pde_ef_coord_cont <- as.data.frame(scores(pde_ef, "vectors")) * ordiArrowMul(pde_ef)
# pdb_ef_coord_cont <- as.data.frame(scores(pdb_ef, "vectors")) * ordiArrowMul(pdb_ef)
# pdb_row_names <- c("minD")
# # Assign the new row names to the data frame
# pdb_ef_coord_cont <- data.frame(row.names = pdb_row_names, pdb_ef_coord_cont)
pd_ef_plot <- ggplot(data = pd_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
geom_point(data = pd_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) +
geom_text_repel(data = pd_NMDS_data.scores, label = pd_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = pde_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD661D") +
geom_text(data = pde_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#CD661D", label = row.names(pde_ef_coord_cont), size = 7) +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = pdb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#698B22") +
# geom_text(data = pdb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
# color = "#698B22", label = row.names(pdb_ef_coord_cont), size = 7) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = .29, y = .22, size = 6,
# label = paste("Stress: ", round(pd_NMDS$stress, digits = 2))) +
labs(color = "Stratification")
pd_ef_plot <- pd_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
pd_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/pd_ef_plot.png", pd_ef_plot, width = 8, height = 4, units = "in")Boxplot of intradissimilarity heterogeneity
The dissimilarity between sites that share the same stratification.
pd_bd_dist <- pd_bd$distances
pd_bd_dist <- as.data.frame(pd_bd_dist)
pd_bd_dist$X <- row.names(pd_bd_dist)
pd_bd_dist_env <- merge(pd_bd_dist, env[-20,], by = "X", sort = F)
pd_bd_dist_env_plot <- ggplot(pd_bd_dist_env, aes(x = Stratification, y = pd_bd_dist,
color = Stratification, fill = Stratification)) +
geom_violin(alpha = 0.75, draw_quantiles = c(0.25, 0.5, 0.75)) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
scale_fill_viridis(alpha = 0.1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
guides(fill = "none", color = "none") +
geom_jitter(shape = 21,
size = 4,
alpha = 0.75,
width = 0.1) +
theme_bw() +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
plot.background = element_blank(),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.border = element_blank(), axis.text = element_text(size = 22, color = "black"),
axis.line = element_line(color = "black")) +
ylab("Distance to Centroid") +
labs(color = "Stratification", tag = "B")
pd_bd_dist_env_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/pd_bd_dist_env_plot.png", pd_bd_dist_env_plot, width = 8.25, height = 4.13, units = "in")Plot phylogenetic NMDS and trait envfit results
Includes a plot of correlated trait variables
pdt_ef_coord_cont <- as.data.frame(scores(pdt_ef, "vectors")) * ordiArrowMul(pdt_ef)
pdt_ef_coord_cat = as.data.frame(scores(pdt_ef, "factors")) * ordiArrowMul(pdt_ef)
pdt_ef_plot <- ggplot(data = pd_NMDS_data.scores, aes(x = NMDS1, y = NMDS2)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
geom_point(data = pd_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = pdt_ef_coord_cont, size =1, alpha = 0.5, color = "#CD3333") +
geom_text(data = pdt_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
color = "#CD3333", label = row.names(pdt_ef_coord_cont)) +
geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
data = pdt_ef_coord_cat, size =1, alpha = 0.5, color = "#8B6508") +
geom_text(data = pdt_ef_coord_cat, aes(x = NMDS1, y = NMDS2),
color = "#8B6508", label = row.names(pdt_ef_coord_cat)) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = .29, y = .22, size = 6,
# label = paste("Stress: ", round(pd_NMDS$stress, digits = 2))) +
labs(color = "Stratification")## Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
## ℹ Please use `linewidth` instead.
## This warning is displayed once every 8 hours.
## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was
## generated.pdt_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/pdt_ef_plot.png", pdt_ef_plot, width = 8, height = 4, units = "in")Environment/biogeography dissimilarity distances
### Environmental
# All sites
enve_dist <- dist(scaled_env[-c(9,16,18,20),c(2:4)], method = "euclidean")
# Mixed and stratified lakes
envems_dist <- dist(scaled_env[c(1:6,8,10,12:15,17,21:23),c(2:4)], method = "euclidean")
# Ocean sites and mixed lakes
enveom_dist <- dist(scaled_env[c(3,6:8,10:11,13:15,19,23),c(2:4)], method = "euclidean")
# Stratified lakes and ocean sites
enveso_dist <- dist(scaled_env[c(1:2,4,5,7,11:12,17,19,21:22),c(2:4)], method = "euclidean")
### Biogeographic
# All sites
envb_dist <- dist(scaled_env[-c(8,20),c(5:6,8,12:15)], method = "euclidean")
# Mixed and stratified lakes
envbms_dist <- dist(scaled_env[c(1:6,10,12:15,17,21:23),c(5:6,8,12:15)], method = "euclidean")
# Ocean sites and mixed lakes
envbom_dist <- dist(scaled_env[c(3,6:7,9:11,13:16,18:19,23),c(5:6,8,12:15)], method = "euclidean")
# Stratified lakes and ocean sites
envbso_dist <- dist(scaled_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(5:6,8,12:15)], method = "euclidean")Environment/biogeography NMDS
To constrain dissimilarities we perform Nonmetric Multidimensional Scaling (NMDS), which tries to find a stable solution using the metaMDS package.
### Environmental
# All sites
enve_NMDS <- metaMDS(enve_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.02991842
## Run 1 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 7.927734e-06 max resid 1.518189e-05
## ... Similar to previous best
## Run 2 stress 0.09023701
## Run 3 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 7.416958e-06 max resid 1.651427e-05
## ... Similar to previous best
## Run 4 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 6.556426e-06 max resid 1.463474e-05
## ... Similar to previous best
## Run 5 stress 0.02991843
## ... Procrustes: rmse 3.268343e-05 max resid 6.640321e-05
## ... Similar to previous best
## Run 6 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 5.469388e-06 max resid 1.093905e-05
## ... Similar to previous best
## Run 7 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 4.43334e-06 max resid 8.876235e-06
## ... Similar to previous best
## Run 8 stress 0.02991842
## ... Procrustes: rmse 1.21299e-05 max resid 2.488979e-05
## ... Similar to previous best
## Run 9 stress 0.02991842
## ... Procrustes: rmse 7.909309e-06 max resid 1.652944e-05
## ... Similar to previous best
## Run 10 stress 0.02991842
## ... Procrustes: rmse 4.854502e-06 max resid 9.021884e-06
## ... Similar to previous best
## Run 11 stress 0.02991843
## ... Procrustes: rmse 2.106383e-05 max resid 4.320865e-05
## ... Similar to previous best
## Run 12 stress 0.09023704
## Run 13 stress 0.02991842
## ... Procrustes: rmse 4.135511e-06 max resid 6.505277e-06
## ... Similar to previous best
## Run 14 stress 0.09023701
## Run 15 stress 0.352842
## Run 16 stress 0.02991842
## ... Procrustes: rmse 6.926008e-06 max resid 1.430135e-05
## ... Similar to previous best
## Run 17 stress 0.02991842
## ... Procrustes: rmse 9.461877e-06 max resid 1.907116e-05
## ... Similar to previous best
## Run 18 stress 0.09169813
## Run 19 stress 0.03663691
## Run 20 stress 0.09169807
## Run 21 stress 0.02991842
## ... Procrustes: rmse 1.080958e-05 max resid 2.03354e-05
## ... Similar to previous best
## Run 22 stress 0.09023701
## Run 23 stress 0.02991842
## ... Procrustes: rmse 5.260802e-06 max resid 1.409544e-05
## ... Similar to previous best
## Run 24 stress 0.02991842
## ... Procrustes: rmse 6.141855e-06 max resid 1.283677e-05
## ... Similar to previous best
## Run 25 stress 0.02991843
## ... Procrustes: rmse 2.904157e-05 max resid 5.8637e-05
## ... Similar to previous best
## Run 26 stress 0.02991842
## ... Procrustes: rmse 1.091825e-05 max resid 2.233127e-05
## ... Similar to previous best
## Run 27 stress 0.09023701
## Run 28 stress 0.02991842
## ... Procrustes: rmse 6.029678e-06 max resid 9.916972e-06
## ... Similar to previous best
## Run 29 stress 0.02991842
## ... Procrustes: rmse 9.745251e-06 max resid 2.069462e-05
## ... Similar to previous best
## Run 30 stress 0.02991842
## ... Procrustes: rmse 5.145387e-06 max resid 9.577867e-06
## ... Similar to previous best
## Run 31 stress 0.03663679
## Run 32 stress 0.02991842
## ... Procrustes: rmse 3.520057e-06 max resid 6.938417e-06
## ... Similar to previous best
## Run 33 stress 0.09169809
## Run 34 stress 0.02991842
## ... Procrustes: rmse 4.266304e-06 max resid 8.785907e-06
## ... Similar to previous best
## Run 35 stress 0.02991842
## ... Procrustes: rmse 1.537147e-05 max resid 3.136649e-05
## ... Similar to previous best
## Run 36 stress 0.02991843
## ... Procrustes: rmse 2.034919e-05 max resid 4.185444e-05
## ... Similar to previous best
## Run 37 stress 0.03663657
## Run 38 stress 0.02991842
## ... Procrustes: rmse 1.58702e-05 max resid 3.249053e-05
## ... Similar to previous best
## Run 39 stress 0.1186089
## Run 40 stress 0.09169808
## Run 41 stress 0.02991843
## ... Procrustes: rmse 2.265933e-05 max resid 4.624876e-05
## ... Similar to previous best
## Run 42 stress 0.02991842
## ... Procrustes: rmse 8.716766e-06 max resid 1.719959e-05
## ... Similar to previous best
## Run 43 stress 0.02991842
## ... Procrustes: rmse 9.217016e-06 max resid 1.890163e-05
## ... Similar to previous best
## Run 44 stress 0.03663673
## Run 45 stress 0.1088093
## Run 46 stress 0.09023701
## Run 47 stress 0.03663691
## Run 48 stress 0.02991842
## ... Procrustes: rmse 1.626056e-05 max resid 3.311974e-05
## ... Similar to previous best
## Run 49 stress 0.09023701
## Run 50 stress 0.02991843
## ... Procrustes: rmse 2.347395e-05 max resid 4.707679e-05
## ... Similar to previous best
## Run 51 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 2.555033e-06 max resid 4.698205e-06
## ... Similar to previous best
## Run 52 stress 0.02991842
## ... Procrustes: rmse 9.70057e-06 max resid 1.989416e-05
## ... Similar to previous best
## Run 53 stress 0.02991842
## ... Procrustes: rmse 4.936798e-06 max resid 1.195098e-05
## ... Similar to previous best
## Run 54 stress 0.02991842
## ... Procrustes: rmse 2.077487e-06 max resid 3.229176e-06
## ... Similar to previous best
## Run 55 stress 0.110018
## Run 56 stress 0.1147129
## Run 57 stress 0.02991842
## ... Procrustes: rmse 4.592946e-06 max resid 9.263642e-06
## ... Similar to previous best
## Run 58 stress 0.03663707
## Run 59 stress 0.02991842
## ... Procrustes: rmse 7.718917e-06 max resid 1.680319e-05
## ... Similar to previous best
## Run 60 stress 0.02991842
## ... Procrustes: rmse 5.129039e-06 max resid 1.039018e-05
## ... Similar to previous best
## Run 61 stress 0.09169813
## Run 62 stress 0.02991842
## ... Procrustes: rmse 5.94038e-06 max resid 1.162666e-05
## ... Similar to previous best
## Run 63 stress 0.110018
## Run 64 stress 0.03663704
## Run 65 stress 0.03663716
## Run 66 stress 0.03663695
## Run 67 stress 0.09169807
## Run 68 stress 0.03663687
## Run 69 stress 0.09023702
## Run 70 stress 0.02991842
## ... Procrustes: rmse 6.529985e-06 max resid 1.288535e-05
## ... Similar to previous best
## Run 71 stress 0.02991842
## ... Procrustes: rmse 1.118255e-05 max resid 2.091829e-05
## ... Similar to previous best
## Run 72 stress 0.1088094
## Run 73 stress 0.09169813
## Run 74 stress 0.02991842
## ... Procrustes: rmse 3.703841e-06 max resid 1.007306e-05
## ... Similar to previous best
## Run 75 stress 0.02991842
## ... Procrustes: rmse 1.639987e-06 max resid 2.898341e-06
## ... Similar to previous best
## Run 76 stress 0.02991842
## ... Procrustes: rmse 8.592408e-06 max resid 1.801897e-05
## ... Similar to previous best
## Run 77 stress 0.1110186
## Run 78 stress 0.1109862
## Run 79 stress 0.02991842
## ... Procrustes: rmse 1.146471e-05 max resid 2.33969e-05
## ... Similar to previous best
## Run 80 stress 0.09023701
## Run 81 stress 0.02991842
## ... Procrustes: rmse 4.831747e-06 max resid 1.364128e-05
## ... Similar to previous best
## Run 82 stress 0.02991842
## ... Procrustes: rmse 3.416612e-06 max resid 7.822285e-06
## ... Similar to previous best
## Run 83 stress 0.02991842
## ... Procrustes: rmse 3.929684e-06 max resid 7.704234e-06
## ... Similar to previous best
## Run 84 stress 0.3481604
## Run 85 stress 0.03663715
## Run 86 stress 0.09169806
## Run 87 stress 0.02991842
## ... Procrustes: rmse 9.011834e-06 max resid 1.859812e-05
## ... Similar to previous best
## Run 88 stress 0.02991848
## ... Procrustes: rmse 2.745152e-05 max resid 4.426959e-05
## ... Similar to previous best
## Run 89 stress 0.02991842
## ... Procrustes: rmse 4.129715e-06 max resid 6.373733e-06
## ... Similar to previous best
## Run 90 stress 0.03663703
## Run 91 stress 0.09023701
## Run 92 stress 0.09023702
## Run 93 stress 0.09023701
## Run 94 stress 0.02991842
## ... Procrustes: rmse 7.341035e-06 max resid 1.469657e-05
## ... Similar to previous best
## Run 95 stress 0.02991842
## ... Procrustes: rmse 2.854891e-06 max resid 6.24075e-06
## ... Similar to previous best
## Run 96 stress 0.02991842
## ... Procrustes: rmse 6.746697e-06 max resid 1.273075e-05
## ... Similar to previous best
## Run 97 stress 0.09023701
## Run 98 stress 0.09023701
## Run 99 stress 0.09023703
## Run 100 stress 0.1088093
## Run 101 stress 0.1186084
## Run 102 stress 0.03663693
## Run 103 stress 0.09169807
## Run 104 stress 0.09023702
## Run 105 stress 0.02991842
## ... Procrustes: rmse 6.37571e-06 max resid 1.205266e-05
## ... Similar to previous best
## Run 106 stress 0.03663706
## Run 107 stress 0.1088093
## Run 108 stress 0.09023701
## Run 109 stress 0.09023701
## Run 110 stress 0.02991842
## ... Procrustes: rmse 2.091123e-06 max resid 3.86338e-06
## ... Similar to previous best
## Run 111 stress 0.09169806
## Run 112 stress 0.02991842
## ... Procrustes: rmse 7.869382e-06 max resid 1.581674e-05
## ... Similar to previous best
## Run 113 stress 0.02991842
## ... Procrustes: rmse 8.300794e-06 max resid 1.660398e-05
## ... Similar to previous best
## Run 114 stress 0.02991842
## ... Procrustes: rmse 1.272497e-05 max resid 2.633422e-05
## ... Similar to previous best
## Run 115 stress 0.02991842
## ... Procrustes: rmse 1.003855e-05 max resid 2.077129e-05
## ... Similar to previous best
## Run 116 stress 0.1088093
## Run 117 stress 0.02991842
## ... Procrustes: rmse 5.813865e-06 max resid 1.189404e-05
## ... Similar to previous best
## Run 118 stress 0.02991842
## ... Procrustes: rmse 4.992034e-06 max resid 1.011008e-05
## ... Similar to previous best
## Run 119 stress 0.02991842
## ... Procrustes: rmse 9.292826e-06 max resid 1.888719e-05
## ... Similar to previous best
## Run 120 stress 0.09023701
## Run 121 stress 0.110018
## Run 122 stress 0.02991842
## ... Procrustes: rmse 4.51346e-06 max resid 9.294654e-06
## ... Similar to previous best
## Run 123 stress 0.02991842
## ... Procrustes: rmse 8.129545e-06 max resid 1.462742e-05
## ... Similar to previous best
## Run 124 stress 0.09023702
## Run 125 stress 0.09023701
## Run 126 stress 0.09023701
## Run 127 stress 0.02991842
## ... Procrustes: rmse 6.173457e-06 max resid 1.253045e-05
## ... Similar to previous best
## Run 128 stress 0.02991842
## ... Procrustes: rmse 1.432676e-05 max resid 2.8528e-05
## ... Similar to previous best
## Run 129 stress 0.02991842
## ... Procrustes: rmse 1.665604e-05 max resid 3.463776e-05
## ... Similar to previous best
## Run 130 stress 0.02991842
## ... Procrustes: rmse 1.729961e-06 max resid 3.954341e-06
## ... Similar to previous best
## Run 131 stress 0.09023701
## Run 132 stress 0.03663675
## Run 133 stress 0.02991842
## ... Procrustes: rmse 7.362839e-06 max resid 1.505682e-05
## ... Similar to previous best
## Run 134 stress 0.1088093
## Run 135 stress 0.09169807
## Run 136 stress 0.09023701
## Run 137 stress 0.03663692
## Run 138 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 1.836598e-06 max resid 3.026752e-06
## ... Similar to previous best
## Run 139 stress 0.09023701
## Run 140 stress 0.02991842
## ... Procrustes: rmse 1.601004e-05 max resid 3.310174e-05
## ... Similar to previous best
## Run 141 stress 0.02991842
## ... Procrustes: rmse 1.670753e-06 max resid 3.494771e-06
## ... Similar to previous best
## Run 142 stress 0.09169806
## Run 143 stress 0.09023701
## Run 144 stress 0.02991842
## ... Procrustes: rmse 1.240345e-05 max resid 2.574448e-05
## ... Similar to previous best
## Run 145 stress 0.03663679
## Run 146 stress 0.02991842
## ... Procrustes: rmse 5.306642e-06 max resid 8.605435e-06
## ... Similar to previous best
## Run 147 stress 0.09023701
## Run 148 stress 0.03663687
## Run 149 stress 0.02991843
## ... Procrustes: rmse 8.824223e-06 max resid 2.075458e-05
## ... Similar to previous best
## Run 150 stress 0.09169809
## Run 151 stress 0.02991842
## ... Procrustes: rmse 3.984957e-06 max resid 9.538941e-06
## ... Similar to previous best
## Run 152 stress 0.03663696
## Run 153 stress 0.03663715
## Run 154 stress 0.02991842
## ... Procrustes: rmse 9.094343e-06 max resid 1.849303e-05
## ... Similar to previous best
## Run 155 stress 0.1088094
## Run 156 stress 0.02991842
## ... Procrustes: rmse 4.933131e-06 max resid 1.055351e-05
## ... Similar to previous best
## Run 157 stress 0.09023701
## Run 158 stress 0.09023701
## Run 159 stress 0.0366369
## Run 160 stress 0.02991842
## ... Procrustes: rmse 1.671895e-05 max resid 3.368629e-05
## ... Similar to previous best
## Run 161 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 1.13386e-06 max resid 2.427977e-06
## ... Similar to previous best
## Run 162 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 2.809123e-06 max resid 5.101596e-06
## ... Similar to previous best
## Run 163 stress 0.02991842
## ... Procrustes: rmse 8.103447e-06 max resid 1.647788e-05
## ... Similar to previous best
## Run 164 stress 0.02991842
## ... Procrustes: rmse 3.511624e-06 max resid 7.342368e-06
## ... Similar to previous best
## Run 165 stress 0.02991842
## ... Procrustes: rmse 1.730464e-06 max resid 4.42158e-06
## ... Similar to previous best
## Run 166 stress 0.02991843
## ... Procrustes: rmse 1.917565e-05 max resid 3.987313e-05
## ... Similar to previous best
## Run 167 stress 0.02991842
## ... Procrustes: rmse 9.264234e-06 max resid 1.92379e-05
## ... Similar to previous best
## Run 168 stress 0.09023702
## Run 169 stress 0.02991842
## ... Procrustes: rmse 9.572121e-06 max resid 1.919126e-05
## ... Similar to previous best
## Run 170 stress 0.02991842
## ... Procrustes: rmse 5.630941e-06 max resid 1.15825e-05
## ... Similar to previous best
## Run 171 stress 0.09169807
## Run 172 stress 0.02991843
## ... Procrustes: rmse 1.392712e-05 max resid 2.645969e-05
## ... Similar to previous best
## Run 173 stress 0.02991842
## ... Procrustes: rmse 5.866593e-06 max resid 1.375404e-05
## ... Similar to previous best
## Run 174 stress 0.03663697
## Run 175 stress 0.02991842
## ... Procrustes: rmse 4.229399e-06 max resid 8.755024e-06
## ... Similar to previous best
## Run 176 stress 0.02991842
## ... Procrustes: rmse 7.838264e-06 max resid 1.584395e-05
## ... Similar to previous best
## Run 177 stress 0.09023703
## Run 178 stress 0.02991842
## ... Procrustes: rmse 4.114617e-06 max resid 9.699002e-06
## ... Similar to previous best
## Run 179 stress 0.02991842
## ... Procrustes: rmse 4.832311e-06 max resid 9.432461e-06
## ... Similar to previous best
## Run 180 stress 0.02991842
## ... Procrustes: rmse 5.073539e-06 max resid 1.072871e-05
## ... Similar to previous best
## Run 181 stress 0.02991842
## ... Procrustes: rmse 7.231737e-06 max resid 1.390554e-05
## ... Similar to previous best
## Run 182 stress 0.02991842
## ... Procrustes: rmse 7.987368e-06 max resid 1.607959e-05
## ... Similar to previous best
## Run 183 stress 0.02991842
## ... Procrustes: rmse 3.317352e-06 max resid 7.051257e-06
## ... Similar to previous best
## Run 184 stress 0.02991843
## ... Procrustes: rmse 2.950308e-05 max resid 6.029956e-05
## ... Similar to previous best
## Run 185 stress 0.02991843
## ... Procrustes: rmse 2.198159e-05 max resid 4.472038e-05
## ... Similar to previous best
## Run 186 stress 0.02991842
## ... Procrustes: rmse 4.257478e-06 max resid 9.811357e-06
## ... Similar to previous best
## Run 187 stress 0.02991842
## ... Procrustes: rmse 1.637298e-06 max resid 2.527321e-06
## ... Similar to previous best
## Run 188 stress 0.09169809
## Run 189 stress 0.03663705
## Run 190 stress 0.02991842
## ... New best solution
## ... Procrustes: rmse 1.939373e-06 max resid 3.468004e-06
## ... Similar to previous best
## Run 191 stress 0.09023701
## Run 192 stress 0.02991843
## ... Procrustes: rmse 2.50039e-05 max resid 5.013976e-05
## ... Similar to previous best
## Run 193 stress 0.02991842
## ... Procrustes: rmse 1.286435e-05 max resid 2.465242e-05
## ... Similar to previous best
## Run 194 stress 0.02991842
## ... Procrustes: rmse 1.491778e-05 max resid 3.00422e-05
## ... Similar to previous best
## Run 195 stress 0.02991842
## ... Procrustes: rmse 4.536161e-06 max resid 8.93335e-06
## ... Similar to previous best
## Run 196 stress 0.03663702
## Run 197 stress 0.02991842
## ... Procrustes: rmse 1.62394e-05 max resid 3.323862e-05
## ... Similar to previous best
## Run 198 stress 0.02991842
## ... Procrustes: rmse 1.203789e-05 max resid 2.401632e-05
## ... Similar to previous best
## Run 199 stress 0.02991843
## ... Procrustes: rmse 2.002139e-05 max resid 4.028859e-05
## ... Similar to previous best
## Run 200 stress 0.02991842
## ... Procrustes: rmse 2.14304e-06 max resid 5.215179e-06
## ... Similar to previous best
## Run 201 stress 0.09169807
## Run 202 stress 0.1110185
## Run 203 stress 0.02991842
## ... Procrustes: rmse 1.684917e-06 max resid 2.813186e-06
## ... Similar to previous best
## Run 204 stress 0.09023702
## Run 205 stress 0.02991842
## ... Procrustes: rmse 6.634577e-06 max resid 1.331742e-05
## ... Similar to previous best
## Run 206 stress 0.02991842
## ... Procrustes: rmse 4.929855e-06 max resid 1.151816e-05
## ... Similar to previous best
## Run 207 stress 0.02991842
## ... Procrustes: rmse 1.454592e-05 max resid 2.951593e-05
## ... Similar to previous best
## Run 208 stress 0.02991842
## ... Procrustes: rmse 1.010144e-05 max resid 2.077329e-05
## ... Similar to previous best
## Run 209 stress 0.09023701
## Run 210 stress 0.1187362
## Run 211 stress 0.02991842
## ... Procrustes: rmse 1.270776e-06 max resid 2.862316e-06
## ... Similar to previous best
## Run 212 stress 0.02991842
## ... Procrustes: rmse 1.759988e-06 max resid 3.87381e-06
## ... Similar to previous best
## Run 213 stress 0.02991842
## ... Procrustes: rmse 3.113378e-06 max resid 5.164975e-06
## ... Similar to previous best
## Run 214 stress 0.09023702
## Run 215 stress 0.02991842
## ... Procrustes: rmse 4.588102e-06 max resid 7.431037e-06
## ... Similar to previous best
## Run 216 stress 0.02991842
## ... Procrustes: rmse 2.889833e-06 max resid 7.261943e-06
## ... Similar to previous best
## Run 217 stress 0.1088093
## Run 218 stress 0.03663674
## Run 219 stress 0.02991842
## ... Procrustes: rmse 1.494731e-05 max resid 3.099801e-05
## ... Similar to previous best
## Run 220 stress 0.02991843
## ... Procrustes: rmse 2.145762e-05 max resid 4.346616e-05
## ... Similar to previous best
## Run 221 stress 0.02991842
## ... Procrustes: rmse 8.118572e-06 max resid 1.627958e-05
## ... Similar to previous best
## Run 222 stress 0.03663714
## Run 223 stress 0.02991842
## ... Procrustes: rmse 3.014506e-06 max resid 7.252105e-06
## ... Similar to previous best
## Run 224 stress 0.03663675
## Run 225 stress 0.09023702
## Run 226 stress 0.02991842
## ... Procrustes: rmse 6.372772e-06 max resid 1.268766e-05
## ... Similar to previous best
## Run 227 stress 0.09023702
## Run 228 stress 0.1088094
## Run 229 stress 0.03663698
## Run 230 stress 0.09169816
## Run 231 stress 0.09169812
## Run 232 stress 0.09023702
## Run 233 stress 0.02991842
## ... Procrustes: rmse 8.74286e-06 max resid 1.595674e-05
## ... Similar to previous best
## Run 234 stress 0.1184596
## Run 235 stress 0.09169814
## Run 236 stress 0.02991842
## ... Procrustes: rmse 5.597984e-06 max resid 1.025533e-05
## ... Similar to previous best
## Run 237 stress 0.02991842
## ... Procrustes: rmse 9.366416e-06 max resid 1.850213e-05
## ... Similar to previous best
## Run 238 stress 0.09023702
## Run 239 stress 0.02991842
## ... Procrustes: rmse 2.441932e-06 max resid 5.272125e-06
## ... Similar to previous best
## Run 240 stress 0.02991842
## ... Procrustes: rmse 6.669348e-07 max resid 1.438e-06
## ... Similar to previous best
## Run 241 stress 0.110018
## Run 242 stress 0.09023702
## Run 243 stress 0.02991842
## ... Procrustes: rmse 9.154911e-06 max resid 1.905281e-05
## ... Similar to previous best
## Run 244 stress 0.09023701
## Run 245 stress 0.03663712
## Run 246 stress 0.1088094
## Run 247 stress 0.0366369
## Run 248 stress 0.09023701
## Run 249 stress 0.02991842
## ... Procrustes: rmse 1.533324e-05 max resid 3.084786e-05
## ... Similar to previous best
## Run 250 stress 0.09023701
## Run 251 stress 0.1088094
## Run 252 stress 0.02991842
## ... Procrustes: rmse 1.608902e-05 max resid 3.239382e-05
## ... Similar to previous best
## Run 253 stress 0.02991842
## ... Procrustes: rmse 7.174807e-06 max resid 1.450818e-05
## ... Similar to previous best
## Run 254 stress 0.1166608
## Run 255 stress 0.09169807
## Run 256 stress 0.02991842
## ... Procrustes: rmse 1.108815e-05 max resid 2.231155e-05
## ... Similar to previous best
## Run 257 stress 0.03663699
## Run 258 stress 0.09023702
## Run 259 stress 0.09169806
## Run 260 stress 0.1147132
## Run 261 stress 0.09023702
## Run 262 stress 0.02991842
## ... Procrustes: rmse 5.400046e-06 max resid 1.08687e-05
## ... Similar to previous best
## Run 263 stress 0.02991842
## ... Procrustes: rmse 4.256351e-06 max resid 1.392938e-05
## ... Similar to previous best
## Run 264 stress 0.02991842
## ... Procrustes: rmse 7.456946e-06 max resid 1.469906e-05
## ... Similar to previous best
## Run 265 stress 0.09169807
## Run 266 stress 0.02991842
## ... Procrustes: rmse 1.658594e-05 max resid 3.412253e-05
## ... Similar to previous best
## Run 267 stress 0.02991842
## ... Procrustes: rmse 8.616672e-07 max resid 1.799983e-06
## ... Similar to previous best
## Run 268 stress 0.3272767
## Run 269 stress 0.09023701
## Run 270 stress 0.03663659
## Run 271 stress 0.02991842
## ... Procrustes: rmse 1.724839e-05 max resid 3.47969e-05
## ... Similar to previous best
## Run 272 stress 0.09023701
## Run 273 stress 0.02991842
## ... Procrustes: rmse 1.059991e-05 max resid 2.13671e-05
## ... Similar to previous best
## Run 274 stress 0.02991842
## ... Procrustes: rmse 9.542826e-06 max resid 1.882375e-05
## ... Similar to previous best
## Run 275 stress 0.03663702
## Run 276 stress 0.02991842
## ... Procrustes: rmse 3.377689e-06 max resid 7.195793e-06
## ... Similar to previous best
## Run 277 stress 0.03663688
## Run 278 stress 0.1110187
## Run 279 stress 0.1185928
## Run 280 stress 0.02991842
## ... Procrustes: rmse 5.295894e-06 max resid 1.063664e-05
## ... Similar to previous best
## Run 281 stress 0.09169806
## Run 282 stress 0.02991842
## ... Procrustes: rmse 2.625891e-06 max resid 5.604211e-06
## ... Similar to previous best
## Run 283 stress 0.09023702
## Run 284 stress 0.02991842
## ... Procrustes: rmse 7.156268e-06 max resid 1.42865e-05
## ... Similar to previous best
## Run 285 stress 0.09169806
## Run 286 stress 0.02991842
## ... Procrustes: rmse 1.675456e-05 max resid 3.393243e-05
## ... Similar to previous best
## Run 287 stress 0.02991842
## ... Procrustes: rmse 3.066207e-06 max resid 6.264382e-06
## ... Similar to previous best
## Run 288 stress 0.02991842
## ... Procrustes: rmse 1.011265e-05 max resid 2.026426e-05
## ... Similar to previous best
## Run 289 stress 0.02991842
## ... Procrustes: rmse 2.540593e-06 max resid 4.266318e-06
## ... Similar to previous best
## Run 290 stress 0.02991843
## ... Procrustes: rmse 2.319706e-05 max resid 4.613677e-05
## ... Similar to previous best
## Run 291 stress 0.02991842
## ... Procrustes: rmse 1.57602e-06 max resid 3.125223e-06
## ... Similar to previous best
## Run 292 stress 0.02991842
## ... Procrustes: rmse 6.62172e-06 max resid 1.379371e-05
## ... Similar to previous best
## Run 293 stress 0.02991843
## ... Procrustes: rmse 2.460949e-05 max resid 4.98332e-05
## ... Similar to previous best
## Run 294 stress 0.02991842
## ... Procrustes: rmse 3.386417e-06 max resid 6.468889e-06
## ... Similar to previous best
## Run 295 stress 0.02991843
## ... Procrustes: rmse 1.137216e-05 max resid 2.076152e-05
## ... Similar to previous best
## Run 296 stress 0.02991842
## ... Procrustes: rmse 1.650106e-06 max resid 2.734396e-06
## ... Similar to previous best
## Run 297 stress 0.03663698
## Run 298 stress 0.02991842
## ... Procrustes: rmse 2.553338e-06 max resid 4.269288e-06
## ... Similar to previous best
## Run 299 stress 0.02991842
## ... Procrustes: rmse 1.125127e-06 max resid 1.917229e-06
## ... Similar to previous best
## Run 300 stress 0.02991842
## ... Procrustes: rmse 1.63782e-05 max resid 3.290125e-05
## ... Similar to previous best
## Run 301 stress 0.02991842
## ... Procrustes: rmse 4.602486e-06 max resid 1.09884e-05
## ... Similar to previous best
## Run 302 stress 0.09169808
## Run 303 stress 0.02991843
## ... Procrustes: rmse 2.678632e-05 max resid 5.459693e-05
## ... Similar to previous best
## Run 304 stress 0.09169806
## Run 305 stress 0.09023701
## Run 306 stress 0.03663708
## Run 307 stress 0.02991842
## ... Procrustes: rmse 9.566625e-06 max resid 1.923606e-05
## ... Similar to previous best
## Run 308 stress 0.02991842
## ... Procrustes: rmse 1.62263e-05 max resid 3.290527e-05
## ... Similar to previous best
## Run 309 stress 0.09023701
## Run 310 stress 0.02991842
## ... Procrustes: rmse 1.206328e-05 max resid 2.421004e-05
## ... Similar to previous best
## Run 311 stress 0.02991843
## ... Procrustes: rmse 2.38573e-05 max resid 4.774304e-05
## ... Similar to previous best
## Run 312 stress 0.02991842
## ... Procrustes: rmse 4.520831e-06 max resid 9.610983e-06
## ... Similar to previous best
## Run 313 stress 0.02991842
## ... Procrustes: rmse 1.296027e-05 max resid 2.657727e-05
## ... Similar to previous best
## Run 314 stress 0.02991842
## ... Procrustes: rmse 8.880655e-06 max resid 1.773136e-05
## ... Similar to previous best
## Run 315 stress 0.02991842
## ... Procrustes: rmse 7.577435e-06 max resid 1.518114e-05
## ... Similar to previous best
## Run 316 stress 0.09169806
## Run 317 stress 0.09169807
## Run 318 stress 0.02991842
## ... Procrustes: rmse 7.476469e-06 max resid 1.563017e-05
## ... Similar to previous best
## Run 319 stress 0.02991842
## ... Procrustes: rmse 1.003574e-05 max resid 1.886673e-05
## ... Similar to previous best
## Run 320 stress 0.02991843
## ... Procrustes: rmse 2.461984e-05 max resid 5.051687e-05
## ... Similar to previous best
## Run 321 stress 0.09169806
## Run 322 stress 0.02991842
## ... Procrustes: rmse 1.652943e-05 max resid 3.316147e-05
## ... Similar to previous best
## Run 323 stress 0.09023701
## Run 324 stress 0.03663662
## Run 325 stress 0.1110185
## Run 326 stress 0.1100181
## Run 327 stress 0.09169806
## Run 328 stress 0.02991842
## ... Procrustes: rmse 4.438123e-06 max resid 1.0696e-05
## ... Similar to previous best
## Run 329 stress 0.02991842
## ... Procrustes: rmse 9.14661e-06 max resid 1.837142e-05
## ... Similar to previous best
## Run 330 stress 0.09023702
## Run 331 stress 0.03663698
## Run 332 stress 0.02991842
## ... Procrustes: rmse 7.928058e-06 max resid 1.68375e-05
## ... Similar to previous best
## Run 333 stress 0.02991842
## ... Procrustes: rmse 7.949484e-06 max resid 1.680612e-05
## ... Similar to previous best
## Run 334 stress 0.09023701
## Run 335 stress 0.09023702
## Run 336 stress 0.02991843
## ... Procrustes: rmse 6.143087e-06 max resid 1.585037e-05
## ... Similar to previous best
## Run 337 stress 0.09023702
## Run 338 stress 0.03663677
## Run 339 stress 0.02991842
## ... Procrustes: rmse 3.960607e-06 max resid 8.612109e-06
## ... Similar to previous best
## Run 340 stress 0.03663709
## Run 341 stress 0.02991842
## ... Procrustes: rmse 1.662367e-05 max resid 3.471996e-05
## ... Similar to previous best
## Run 342 stress 0.118841
## Run 343 stress 0.09023701
## Run 344 stress 0.1099274
## Run 345 stress 0.02991842
## ... Procrustes: rmse 9.036693e-06 max resid 1.791421e-05
## ... Similar to previous best
## Run 346 stress 0.1114285
## Run 347 stress 0.02991842
## ... Procrustes: rmse 9.002795e-06 max resid 2.008636e-05
## ... Similar to previous best
## Run 348 stress 0.02991842
## ... Procrustes: rmse 6.679675e-06 max resid 1.576318e-05
## ... Similar to previous best
## Run 349 stress 0.02991842
## ... Procrustes: rmse 6.062342e-06 max resid 1.258628e-05
## ... Similar to previous best
## Run 350 stress 0.02991842
## ... Procrustes: rmse 5.175593e-07 max resid 1.178297e-06
## ... Similar to previous best
## Run 351 stress 0.09169809
## Run 352 stress 0.02991842
## ... Procrustes: rmse 5.241141e-06 max resid 1.102547e-05
## ... Similar to previous best
## Run 353 stress 0.03663666
## Run 354 stress 0.09169806
## Run 355 stress 0.09023701
## Run 356 stress 0.09169807
## Run 357 stress 0.02991842
## ... Procrustes: rmse 5.073589e-06 max resid 1.069528e-05
## ... Similar to previous best
## Run 358 stress 0.02991842
## ... Procrustes: rmse 1.08885e-05 max resid 2.184512e-05
## ... Similar to previous best
## Run 359 stress 0.02991842
## ... Procrustes: rmse 2.4748e-06 max resid 4.64477e-06
## ... Similar to previous best
## Run 360 stress 0.02991842
## ... Procrustes: rmse 9.025654e-06 max resid 2.272095e-05
## ... Similar to previous best
## Run 361 stress 0.09023701
## Run 362 stress 0.02991842
## ... Procrustes: rmse 9.512208e-06 max resid 1.86135e-05
## ... Similar to previous best
## Run 363 stress 0.110018
## Run 364 stress 0.09169807
## Run 365 stress 0.02991843
## ... Procrustes: rmse 2.726975e-05 max resid 5.679539e-05
## ... Similar to previous best
## Run 366 stress 0.1088093
## Run 367 stress 0.09169807
## Run 368 stress 0.02991842
## ... Procrustes: rmse 2.447219e-06 max resid 5.080163e-06
## ... Similar to previous best
## Run 369 stress 0.09023701
## Run 370 stress 0.02991842
## ... Procrustes: rmse 7.38612e-06 max resid 1.441831e-05
## ... Similar to previous best
## Run 371 stress 0.03663658
## Run 372 stress 0.02991842
## ... Procrustes: rmse 5.642358e-06 max resid 1.123515e-05
## ... Similar to previous best
## Run 373 stress 0.09023703
## Run 374 stress 0.03663702
## Run 375 stress 0.02991842
## ... Procrustes: rmse 5.381434e-06 max resid 1.035468e-05
## ... Similar to previous best
## Run 376 stress 0.02991842
## ... Procrustes: rmse 1.176695e-06 max resid 2.436844e-06
## ... Similar to previous best
## Run 377 stress 0.03663684
## Run 378 stress 0.09023701
## Run 379 stress 0.09023702
## Run 380 stress 0.02991843
## ... Procrustes: rmse 2.032044e-05 max resid 4.107364e-05
## ... Similar to previous best
## Run 381 stress 0.02991842
## ... Procrustes: rmse 3.572445e-06 max resid 6.956277e-06
## ... Similar to previous best
## Run 382 stress 0.1088094
## Run 383 stress 0.02991842
## ... Procrustes: rmse 4.875534e-06 max resid 9.571153e-06
## ... Similar to previous best
## Run 384 stress 0.09023703
## Run 385 stress 0.02991842
## ... Procrustes: rmse 1.377755e-05 max resid 2.839211e-05
## ... Similar to previous best
## Run 386 stress 0.02991842
## ... Procrustes: rmse 3.778017e-06 max resid 7.277234e-06
## ... Similar to previous best
## Run 387 stress 0.09023701
## Run 388 stress 0.02991842
## ... Procrustes: rmse 1.572722e-05 max resid 3.365784e-05
## ... Similar to previous best
## Run 389 stress 0.09023704
## Run 390 stress 0.1088093
## Run 391 stress 0.09169808
## Run 392 stress 0.02991842
## ... Procrustes: rmse 5.935896e-06 max resid 1.182367e-05
## ... Similar to previous best
## Run 393 stress 0.02991842
## ... Procrustes: rmse 6.046739e-06 max resid 1.19708e-05
## ... Similar to previous best
## Run 394 stress 0.02991843
## ... Procrustes: rmse 2.966681e-05 max resid 5.920051e-05
## ... Similar to previous best
## Run 395 stress 0.02991842
## ... Procrustes: rmse 4.3976e-06 max resid 8.808236e-06
## ... Similar to previous best
## Run 396 stress 0.110018
## Run 397 stress 0.02991842
## ... Procrustes: rmse 1.127782e-05 max resid 2.259701e-05
## ... Similar to previous best
## Run 398 stress 0.03663696
## Run 399 stress 0.03663689
## Run 400 stress 0.09169806
## Run 401 stress 0.1110186
## Run 402 stress 0.02991842
## ... Procrustes: rmse 1.083979e-05 max resid 2.065701e-05
## ... Similar to previous best
## Run 403 stress 0.09169809
## Run 404 stress 0.02991842
## ... Procrustes: rmse 1.124168e-05 max resid 2.261686e-05
## ... Similar to previous best
## Run 405 stress 0.03663717
## Run 406 stress 0.02991842
## ... Procrustes: rmse 1.740101e-06 max resid 2.905679e-06
## ... Similar to previous best
## Run 407 stress 0.02991842
## ... Procrustes: rmse 1.051793e-05 max resid 2.032746e-05
## ... Similar to previous best
## Run 408 stress 0.02991842
## ... Procrustes: rmse 4.088433e-07 max resid 7.316082e-07
## ... Similar to previous best
## Run 409 stress 0.1182729
## Run 410 stress 0.02991842
## ... Procrustes: rmse 6.550062e-06 max resid 1.366841e-05
## ... Similar to previous best
## Run 411 stress 0.02991843
## ... Procrustes: rmse 1.918129e-05 max resid 3.863755e-05
## ... Similar to previous best
## Run 412 stress 0.02991843
## ... Procrustes: rmse 2.988133e-05 max resid 6.039896e-05
## ... Similar to previous best
## Run 413 stress 0.02991843
## ... Procrustes: rmse 2.975474e-05 max resid 6.025731e-05
## ... Similar to previous best
## Run 414 stress 0.09169808
## Run 415 stress 0.02991843
## ... Procrustes: rmse 2.113339e-05 max resid 4.692777e-05
## ... Similar to previous best
## Run 416 stress 0.02991842
## ... Procrustes: rmse 1.019092e-05 max resid 2.05158e-05
## ... Similar to previous best
## Run 417 stress 0.03663702
## Run 418 stress 0.03663651
## Run 419 stress 0.03663698
## Run 420 stress 0.03663692
## Run 421 stress 0.02991842
## ... Procrustes: rmse 2.723662e-06 max resid 5.758264e-06
## ... Similar to previous best
## Run 422 stress 0.09169808
## Run 423 stress 0.1110185
## Run 424 stress 0.03663707
## Run 425 stress 0.02991842
## ... Procrustes: rmse 2.934537e-06 max resid 6.258932e-06
## ... Similar to previous best
## Run 426 stress 0.09023701
## Run 427 stress 0.02991842
## ... Procrustes: rmse 7.25263e-06 max resid 1.44331e-05
## ... Similar to previous best
## Run 428 stress 0.09023701
## Run 429 stress 0.02991842
## ... Procrustes: rmse 1.780989e-05 max resid 3.596841e-05
## ... Similar to previous best
## Run 430 stress 0.03663687
## Run 431 stress 0.03663694
## Run 432 stress 0.02991842
## ... Procrustes: rmse 3.658657e-06 max resid 7.990967e-06
## ... Similar to previous best
## Run 433 stress 0.02991842
## ... Procrustes: rmse 1.034604e-05 max resid 2.081861e-05
## ... Similar to previous best
## Run 434 stress 0.02991842
## ... Procrustes: rmse 9.278844e-06 max resid 1.863549e-05
## ... Similar to previous best
## Run 435 stress 0.09023701
## Run 436 stress 0.02991842
## ... Procrustes: rmse 1.569064e-06 max resid 3.492159e-06
## ... Similar to previous best
## Run 437 stress 0.02991843
## ... Procrustes: rmse 1.289326e-05 max resid 2.282199e-05
## ... Similar to previous best
## Run 438 stress 0.02991842
## ... Procrustes: rmse 6.858336e-06 max resid 1.358904e-05
## ... Similar to previous best
## Run 439 stress 0.02991842
## ... Procrustes: rmse 3.975595e-06 max resid 8.170639e-06
## ... Similar to previous best
## Run 440 stress 0.02991842
## ... Procrustes: rmse 5.69131e-06 max resid 1.094983e-05
## ... Similar to previous best
## Run 441 stress 0.02991842
## ... Procrustes: rmse 9.121802e-06 max resid 1.828632e-05
## ... Similar to previous best
## Run 442 stress 0.02991842
## ... Procrustes: rmse 7.834438e-06 max resid 1.554289e-05
## ... Similar to previous best
## Run 443 stress 0.02991842
## ... Procrustes: rmse 4.961759e-06 max resid 1.053701e-05
## ... Similar to previous best
## Run 444 stress 0.02991842
## ... Procrustes: rmse 9.687504e-07 max resid 2.182231e-06
## ... Similar to previous best
## Run 445 stress 0.02991842
## ... Procrustes: rmse 1.167824e-05 max resid 2.344349e-05
## ... Similar to previous best
## Run 446 stress 0.09023701
## Run 447 stress 0.03663678
## Run 448 stress 0.02991843
## ... Procrustes: rmse 3.008155e-05 max resid 6.18172e-05
## ... Similar to previous best
## Run 449 stress 0.1186088
## Run 450 stress 0.1177874
## Run 451 stress 0.03663698
## Run 452 stress 0.03663704
## Run 453 stress 0.02991842
## ... Procrustes: rmse 2.070025e-06 max resid 5.872189e-06
## ... Similar to previous best
## Run 454 stress 0.02991842
## ... Procrustes: rmse 7.70192e-06 max resid 1.425737e-05
## ... Similar to previous best
## Run 455 stress 0.09023701
## Run 456 stress 0.1088094
## Run 457 stress 0.09169806
## Run 458 stress 0.02991842
## ... Procrustes: rmse 2.399757e-06 max resid 4.630803e-06
## ... Similar to previous best
## Run 459 stress 0.02991842
## ... Procrustes: rmse 3.912469e-06 max resid 7.457854e-06
## ... Similar to previous best
## Run 460 stress 0.09023701
## Run 461 stress 0.02991842
## ... Procrustes: rmse 3.242142e-06 max resid 6.927735e-06
## ... Similar to previous best
## Run 462 stress 0.02991842
## ... Procrustes: rmse 3.926913e-06 max resid 8.363069e-06
## ... Similar to previous best
## Run 463 stress 0.02991842
## ... Procrustes: rmse 4.90034e-06 max resid 1.271231e-05
## ... Similar to previous best
## Run 464 stress 0.110018
## Run 465 stress 0.02991842
## ... Procrustes: rmse 6.498026e-06 max resid 1.11175e-05
## ... Similar to previous best
## Run 466 stress 0.02991842
## ... Procrustes: rmse 2.458478e-06 max resid 4.483033e-06
## ... Similar to previous best
## Run 467 stress 0.02991842
## ... Procrustes: rmse 6.821609e-06 max resid 1.346729e-05
## ... Similar to previous best
## Run 468 stress 0.02991843
## ... Procrustes: rmse 1.594292e-05 max resid 3.007166e-05
## ... Similar to previous best
## Run 469 stress 0.02991842
## ... Procrustes: rmse 3.523167e-06 max resid 6.848842e-06
## ... Similar to previous best
## Run 470 stress 0.02991842
## ... Procrustes: rmse 9.166525e-07 max resid 2.541447e-06
## ... Similar to previous best
## Run 471 stress 0.02991842
## ... Procrustes: rmse 7.268619e-06 max resid 1.503545e-05
## ... Similar to previous best
## Run 472 stress 0.03663708
## Run 473 stress 0.02991842
## ... Procrustes: rmse 1.324874e-05 max resid 2.6736e-05
## ... Similar to previous best
## Run 474 stress 0.1147133
## Run 475 stress 0.09023701
## Run 476 stress 0.02991842
## ... Procrustes: rmse 6.156631e-06 max resid 1.255164e-05
## ... Similar to previous best
## Run 477 stress 0.02991842
## ... Procrustes: rmse 5.27272e-06 max resid 1.066114e-05
## ... Similar to previous best
## Run 478 stress 0.03663695
## Run 479 stress 0.02991842
## ... Procrustes: rmse 4.500819e-06 max resid 8.732012e-06
## ... Similar to previous best
## Run 480 stress 0.09023702
## Run 481 stress 0.02991842
## ... Procrustes: rmse 5.639785e-06 max resid 1.167128e-05
## ... Similar to previous best
## Run 482 stress 0.09169807
## Run 483 stress 0.02991843
## ... Procrustes: rmse 2.999747e-05 max resid 6.063022e-05
## ... Similar to previous best
## Run 484 stress 0.02991842
## ... Procrustes: rmse 4.247095e-06 max resid 9.778421e-06
## ... Similar to previous best
## Run 485 stress 0.1110187
## Run 486 stress 0.02991842
## ... Procrustes: rmse 4.881085e-06 max resid 1.372691e-05
## ... Similar to previous best
## Run 487 stress 0.02991842
## ... Procrustes: rmse 4.182511e-06 max resid 7.775262e-06
## ... Similar to previous best
## Run 488 stress 0.02991842
## ... Procrustes: rmse 1.27842e-05 max resid 2.630615e-05
## ... Similar to previous best
## Run 489 stress 0.03663694
## Run 490 stress 0.1088093
## Run 491 stress 0.02991842
## ... Procrustes: rmse 1.143595e-05 max resid 2.323239e-05
## ... Similar to previous best
## Run 492 stress 0.09023701
## Run 493 stress 0.02991842
## ... Procrustes: rmse 7.258613e-06 max resid 1.342979e-05
## ... Similar to previous best
## Run 494 stress 0.09023701
## Run 495 stress 0.02991843
## ... Procrustes: rmse 2.412038e-05 max resid 4.881233e-05
## ... Similar to previous best
## Run 496 stress 0.02991842
## ... Procrustes: rmse 5.597535e-06 max resid 1.172841e-05
## ... Similar to previous best
## Run 497 stress 0.09023701
## Run 498 stress 0.09023701
## Run 499 stress 0.02991842
## ... Procrustes: rmse 1.319268e-05 max resid 2.646077e-05
## ... Similar to previous best
## Run 500 stress 0.02991842
## ... Procrustes: rmse 4.37106e-06 max resid 7.512648e-06
## ... Similar to previous best
## *** Best solution repeated 168 times# Mixed and stratified lakes
envems_NMDS <- metaMDS(envems_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.03273609
## Run 1 stress 0.1026254
## Run 2 stress 0.0327361
## ... Procrustes: rmse 2.014782e-05 max resid 6.291115e-05
## ... Similar to previous best
## Run 3 stress 0.03273609
## ... Procrustes: rmse 3.789677e-06 max resid 8.824544e-06
## ... Similar to previous best
## Run 4 stress 0.03273609
## ... Procrustes: rmse 8.557652e-06 max resid 2.222101e-05
## ... Similar to previous best
## Run 5 stress 0.03273609
## ... Procrustes: rmse 5.58586e-06 max resid 1.468844e-05
## ... Similar to previous best
## Run 6 stress 0.03273609
## ... Procrustes: rmse 5.01653e-06 max resid 1.002202e-05
## ... Similar to previous best
## Run 7 stress 0.1026255
## Run 8 stress 0.102538
## Run 9 stress 0.03273609
## ... Procrustes: rmse 7.389458e-06 max resid 1.985251e-05
## ... Similar to previous best
## Run 10 stress 0.03273609
## ... Procrustes: rmse 3.406543e-06 max resid 9.299371e-06
## ... Similar to previous best
## Run 11 stress 0.1025379
## Run 12 stress 0.03273609
## ... Procrustes: rmse 4.331081e-06 max resid 1.148345e-05
## ... Similar to previous best
## Run 13 stress 0.1382404
## Run 14 stress 0.1025379
## Run 15 stress 0.03273609
## ... Procrustes: rmse 1.227913e-05 max resid 3.656083e-05
## ... Similar to previous best
## Run 16 stress 0.03273609
## ... Procrustes: rmse 4.143275e-06 max resid 8.895981e-06
## ... Similar to previous best
## Run 17 stress 0.03273609
## ... Procrustes: rmse 2.962695e-06 max resid 6.590173e-06
## ... Similar to previous best
## Run 18 stress 0.1026254
## Run 19 stress 0.03273609
## ... New best solution
## ... Procrustes: rmse 1.855142e-06 max resid 4.309769e-06
## ... Similar to previous best
## Run 20 stress 0.1025379
## Run 21 stress 0.1026254
## Run 22 stress 0.03273609
## ... Procrustes: rmse 3.002152e-06 max resid 8.708534e-06
## ... Similar to previous best
## Run 23 stress 0.1026254
## Run 24 stress 0.03273609
## ... Procrustes: rmse 8.21052e-06 max resid 2.449423e-05
## ... Similar to previous best
## Run 25 stress 0.03273609
## ... Procrustes: rmse 1.871134e-06 max resid 4.235371e-06
## ... Similar to previous best
## Run 26 stress 0.03273609
## ... Procrustes: rmse 6.195777e-06 max resid 1.848589e-05
## ... Similar to previous best
## Run 27 stress 0.03273609
## ... Procrustes: rmse 5.46445e-06 max resid 1.30263e-05
## ... Similar to previous best
## Run 28 stress 0.03273609
## ... Procrustes: rmse 7.731006e-06 max resid 2.339245e-05
## ... Similar to previous best
## Run 29 stress 0.03273609
## ... Procrustes: rmse 1.257467e-05 max resid 3.937125e-05
## ... Similar to previous best
## Run 30 stress 0.03273609
## ... Procrustes: rmse 4.013991e-06 max resid 1.172179e-05
## ... Similar to previous best
## Run 31 stress 0.1026254
## Run 32 stress 0.03273609
## ... Procrustes: rmse 2.174845e-06 max resid 4.487961e-06
## ... Similar to previous best
## Run 33 stress 0.03273609
## ... Procrustes: rmse 3.253149e-06 max resid 8.557498e-06
## ... Similar to previous best
## Run 34 stress 0.03273609
## ... Procrustes: rmse 4.832016e-06 max resid 1.451613e-05
## ... Similar to previous best
## Run 35 stress 0.1193634
## Run 36 stress 0.0327361
## ... Procrustes: rmse 1.418515e-05 max resid 4.387516e-05
## ... Similar to previous best
## Run 37 stress 0.0327361
## ... Procrustes: rmse 8.50605e-06 max resid 1.980564e-05
## ... Similar to previous best
## Run 38 stress 0.1193633
## Run 39 stress 0.1026254
## Run 40 stress 0.1241389
## Run 41 stress 0.1025379
## Run 42 stress 0.03273609
## ... Procrustes: rmse 2.702792e-06 max resid 6.223256e-06
## ... Similar to previous best
## Run 43 stress 0.0327361
## ... Procrustes: rmse 1.908137e-05 max resid 5.829503e-05
## ... Similar to previous best
## Run 44 stress 0.0327361
## ... Procrustes: rmse 1.861846e-05 max resid 5.675261e-05
## ... Similar to previous best
## Run 45 stress 0.1025379
## Run 46 stress 0.03273609
## ... Procrustes: rmse 3.710211e-06 max resid 1.116426e-05
## ... Similar to previous best
## Run 47 stress 0.1320372
## Run 48 stress 0.102538
## Run 49 stress 0.03273609
## ... Procrustes: rmse 6.940964e-06 max resid 2.031885e-05
## ... Similar to previous best
## Run 50 stress 0.03273609
## ... Procrustes: rmse 1.032447e-05 max resid 3.1975e-05
## ... Similar to previous best
## Run 51 stress 0.1241389
## Run 52 stress 0.03273609
## ... Procrustes: rmse 5.862576e-06 max resid 1.75824e-05
## ... Similar to previous best
## Run 53 stress 0.1026254
## Run 54 stress 0.1026254
## Run 55 stress 0.0327361
## ... Procrustes: rmse 1.812035e-05 max resid 5.628908e-05
## ... Similar to previous best
## Run 56 stress 0.0327361
## ... Procrustes: rmse 2.132863e-05 max resid 6.488839e-05
## ... Similar to previous best
## Run 57 stress 0.03273609
## ... Procrustes: rmse 6.284632e-06 max resid 1.872562e-05
## ... Similar to previous best
## Run 58 stress 0.1026254
## Run 59 stress 0.03273609
## ... Procrustes: rmse 3.791775e-06 max resid 9.231266e-06
## ... Similar to previous best
## Run 60 stress 0.03273609
## ... Procrustes: rmse 1.22587e-06 max resid 2.829296e-06
## ... Similar to previous best
## Run 61 stress 0.1025379
## Run 62 stress 0.0327361
## ... Procrustes: rmse 2.176436e-05 max resid 6.624425e-05
## ... Similar to previous best
## Run 63 stress 0.03273609
## ... Procrustes: rmse 4.27359e-06 max resid 1.195832e-05
## ... Similar to previous best
## Run 64 stress 0.102538
## Run 65 stress 0.03273609
## ... Procrustes: rmse 4.160295e-06 max resid 1.242872e-05
## ... Similar to previous best
## Run 66 stress 0.102538
## Run 67 stress 0.03273609
## ... Procrustes: rmse 1.30284e-06 max resid 2.533933e-06
## ... Similar to previous best
## Run 68 stress 0.03273609
## ... Procrustes: rmse 1.012589e-05 max resid 3.179808e-05
## ... Similar to previous best
## Run 69 stress 0.03273609
## ... Procrustes: rmse 6.971151e-06 max resid 2.201412e-05
## ... Similar to previous best
## Run 70 stress 0.03273609
## ... Procrustes: rmse 2.241879e-06 max resid 4.924643e-06
## ... Similar to previous best
## Run 71 stress 0.1193633
## Run 72 stress 0.1026254
## Run 73 stress 0.03273609
## ... Procrustes: rmse 5.013345e-06 max resid 1.339845e-05
## ... Similar to previous best
## Run 74 stress 0.1320278
## Run 75 stress 0.119189
## Run 76 stress 0.03273609
## ... Procrustes: rmse 9.746381e-06 max resid 2.939906e-05
## ... Similar to previous best
## Run 77 stress 0.03273609
## ... Procrustes: rmse 3.227104e-06 max resid 7.834673e-06
## ... Similar to previous best
## Run 78 stress 0.03273611
## ... Procrustes: rmse 1.434117e-05 max resid 3.244465e-05
## ... Similar to previous best
## Run 79 stress 0.03273609
## ... Procrustes: rmse 1.882385e-06 max resid 5.302782e-06
## ... Similar to previous best
## Run 80 stress 0.0327361
## ... Procrustes: rmse 9.680769e-06 max resid 2.958498e-05
## ... Similar to previous best
## Run 81 stress 0.03273609
## ... New best solution
## ... Procrustes: rmse 1.778302e-06 max resid 5.166974e-06
## ... Similar to previous best
## Run 82 stress 0.03273609
## ... Procrustes: rmse 4.195881e-06 max resid 1.221771e-05
## ... Similar to previous best
## Run 83 stress 0.1025379
## Run 84 stress 0.03273609
## ... Procrustes: rmse 4.67389e-06 max resid 1.481953e-05
## ... Similar to previous best
## Run 85 stress 0.03273609
## ... Procrustes: rmse 1.533336e-06 max resid 2.6635e-06
## ... Similar to previous best
## Run 86 stress 0.03273609
## ... Procrustes: rmse 1.261108e-06 max resid 2.364629e-06
## ... Similar to previous best
## Run 87 stress 0.03273609
## ... Procrustes: rmse 2.710314e-06 max resid 7.044019e-06
## ... Similar to previous best
## Run 88 stress 0.03273609
## ... Procrustes: rmse 1.833781e-06 max resid 5.189235e-06
## ... Similar to previous best
## Run 89 stress 0.1193633
## Run 90 stress 0.1321015
## Run 91 stress 0.0327361
## ... Procrustes: rmse 2.297964e-05 max resid 6.966835e-05
## ... Similar to previous best
## Run 92 stress 0.03273609
## ... Procrustes: rmse 4.858467e-06 max resid 1.403223e-05
## ... Similar to previous best
## Run 93 stress 0.1321013
## Run 94 stress 0.1026255
## Run 95 stress 0.03273609
## ... Procrustes: rmse 9.97902e-06 max resid 2.973147e-05
## ... Similar to previous best
## Run 96 stress 0.03273609
## ... Procrustes: rmse 7.42018e-06 max resid 2.102758e-05
## ... Similar to previous best
## Run 97 stress 0.03273609
## ... Procrustes: rmse 7.06766e-06 max resid 2.019502e-05
## ... Similar to previous best
## Run 98 stress 0.03273609
## ... Procrustes: rmse 4.537336e-06 max resid 1.303849e-05
## ... Similar to previous best
## Run 99 stress 0.1320278
## Run 100 stress 0.03273609
## ... Procrustes: rmse 3.122991e-06 max resid 9.493298e-06
## ... Similar to previous best
## Run 101 stress 0.03273609
## ... Procrustes: rmse 1.022645e-06 max resid 2.117727e-06
## ... Similar to previous best
## Run 102 stress 0.03273609
## ... Procrustes: rmse 6.494098e-06 max resid 1.615071e-05
## ... Similar to previous best
## Run 103 stress 0.1388864
## Run 104 stress 0.1026254
## Run 105 stress 0.0327361
## ... Procrustes: rmse 1.681393e-05 max resid 4.897326e-05
## ... Similar to previous best
## Run 106 stress 0.03273609
## ... Procrustes: rmse 4.827075e-06 max resid 1.275137e-05
## ... Similar to previous best
## Run 107 stress 0.03273609
## ... Procrustes: rmse 8.784702e-06 max resid 2.570441e-05
## ... Similar to previous best
## Run 108 stress 0.03273609
## ... Procrustes: rmse 4.847515e-06 max resid 1.539143e-05
## ... Similar to previous best
## Run 109 stress 0.03273609
## ... Procrustes: rmse 3.487745e-06 max resid 1.109187e-05
## ... Similar to previous best
## Run 110 stress 0.03273609
## ... Procrustes: rmse 4.711093e-06 max resid 1.306223e-05
## ... Similar to previous best
## Run 111 stress 0.03273609
## ... Procrustes: rmse 4.809319e-06 max resid 1.243903e-05
## ... Similar to previous best
## Run 112 stress 0.03273609
## ... Procrustes: rmse 5.666473e-06 max resid 1.506622e-05
## ... Similar to previous best
## Run 113 stress 0.03273609
## ... Procrustes: rmse 2.897989e-06 max resid 7.144584e-06
## ... Similar to previous best
## Run 114 stress 0.03273609
## ... New best solution
## ... Procrustes: rmse 1.311593e-06 max resid 2.691743e-06
## ... Similar to previous best
## Run 115 stress 0.03273609
## ... Procrustes: rmse 3.125292e-06 max resid 8.160987e-06
## ... Similar to previous best
## Run 116 stress 0.1321885
## Run 117 stress 0.03273609
## ... Procrustes: rmse 7.419303e-06 max resid 2.220763e-05
## ... Similar to previous best
## Run 118 stress 0.1193633
## Run 119 stress 0.03273609
## ... Procrustes: rmse 6.20418e-06 max resid 1.871504e-05
## ... Similar to previous best
## Run 120 stress 0.0327361
## ... Procrustes: rmse 2.268264e-05 max resid 6.962524e-05
## ... Similar to previous best
## Run 121 stress 0.03273609
## ... Procrustes: rmse 2.512045e-06 max resid 3.909584e-06
## ... Similar to previous best
## Run 122 stress 0.03273609
## ... New best solution
## ... Procrustes: rmse 1.300788e-06 max resid 3.240907e-06
## ... Similar to previous best
## Run 123 stress 0.1380724
## Run 124 stress 0.03273609
## ... Procrustes: rmse 3.990315e-06 max resid 1.1532e-05
## ... Similar to previous best
## Run 125 stress 0.03273609
## ... Procrustes: rmse 3.211907e-06 max resid 7.671212e-06
## ... Similar to previous best
## Run 126 stress 0.123904
## Run 127 stress 0.03273609
## ... Procrustes: rmse 3.100323e-06 max resid 8.673785e-06
## ... Similar to previous best
## Run 128 stress 0.03273609
## ... Procrustes: rmse 5.348409e-06 max resid 1.486818e-05
## ... Similar to previous best
## Run 129 stress 0.03273609
## ... Procrustes: rmse 3.046572e-06 max resid 9.373607e-06
## ... Similar to previous best
## Run 130 stress 0.03273609
## ... Procrustes: rmse 4.837166e-06 max resid 1.125324e-05
## ... Similar to previous best
## Run 131 stress 0.03273609
## ... Procrustes: rmse 9.679592e-06 max resid 2.976943e-05
## ... Similar to previous best
## Run 132 stress 0.1026254
## Run 133 stress 0.03273609
## ... Procrustes: rmse 4.362461e-06 max resid 1.301304e-05
## ... Similar to previous best
## Run 134 stress 0.03273609
## ... Procrustes: rmse 4.676766e-06 max resid 1.351412e-05
## ... Similar to previous best
## Run 135 stress 0.1389214
## Run 136 stress 0.102538
## Run 137 stress 0.03273609
## ... Procrustes: rmse 3.994826e-06 max resid 1.207485e-05
## ... Similar to previous best
## Run 138 stress 0.03273609
## ... Procrustes: rmse 2.057204e-06 max resid 5.866774e-06
## ... Similar to previous best
## Run 139 stress 0.03273609
## ... Procrustes: rmse 6.328092e-06 max resid 1.931479e-05
## ... Similar to previous best
## Run 140 stress 0.0327361
## ... Procrustes: rmse 1.250865e-05 max resid 3.748532e-05
## ... Similar to previous best
## Run 141 stress 0.1025379
## Run 142 stress 0.1025379
## Run 143 stress 0.03273609
## ... Procrustes: rmse 6.340014e-06 max resid 1.91063e-05
## ... Similar to previous best
## Run 144 stress 0.03273609
## ... Procrustes: rmse 9.302938e-07 max resid 2.226842e-06
## ... Similar to previous best
## Run 145 stress 0.1025379
## Run 146 stress 0.1025379
## Run 147 stress 0.351023
## Run 148 stress 0.03273609
## ... Procrustes: rmse 8.334324e-06 max resid 2.283965e-05
## ... Similar to previous best
## Run 149 stress 0.03273609
## ... Procrustes: rmse 5.549912e-06 max resid 1.621959e-05
## ... Similar to previous best
## Run 150 stress 0.1026254
## Run 151 stress 0.03273609
## ... Procrustes: rmse 3.559429e-06 max resid 9.550395e-06
## ... Similar to previous best
## Run 152 stress 0.03273609
## ... Procrustes: rmse 5.183013e-06 max resid 1.470576e-05
## ... Similar to previous best
## Run 153 stress 0.03273609
## ... Procrustes: rmse 3.53028e-06 max resid 1.041439e-05
## ... Similar to previous best
## Run 154 stress 0.03273609
## ... Procrustes: rmse 2.001656e-06 max resid 5.365189e-06
## ... Similar to previous best
## Run 155 stress 0.03273609
## ... Procrustes: rmse 6.539634e-06 max resid 2.089649e-05
## ... Similar to previous best
## Run 156 stress 0.0327361
## ... Procrustes: rmse 1.863414e-05 max resid 5.674036e-05
## ... Similar to previous best
## Run 157 stress 0.0327361
## ... Procrustes: rmse 1.328387e-05 max resid 4.299977e-05
## ... Similar to previous best
## Run 158 stress 0.03273609
## ... Procrustes: rmse 4.537089e-06 max resid 1.384574e-05
## ... Similar to previous best
## Run 159 stress 0.03273609
## ... Procrustes: rmse 3.704254e-06 max resid 9.418667e-06
## ... Similar to previous best
## Run 160 stress 0.03273609
## ... Procrustes: rmse 7.737659e-06 max resid 2.467069e-05
## ... Similar to previous best
## Run 161 stress 0.03273609
## ... Procrustes: rmse 2.702012e-06 max resid 7.926672e-06
## ... Similar to previous best
## Run 162 stress 0.1025379
## Run 163 stress 0.03273609
## ... Procrustes: rmse 1.611036e-06 max resid 4.070694e-06
## ... Similar to previous best
## Run 164 stress 0.03273609
## ... Procrustes: rmse 1.64622e-06 max resid 4.018309e-06
## ... Similar to previous best
## Run 165 stress 0.03273609
## ... Procrustes: rmse 8.63012e-06 max resid 2.759943e-05
## ... Similar to previous best
## Run 166 stress 0.03273609
## ... Procrustes: rmse 7.386126e-06 max resid 1.717081e-05
## ... Similar to previous best
## Run 167 stress 0.1193634
## Run 168 stress 0.03273609
## ... Procrustes: rmse 4.442702e-06 max resid 1.432267e-05
## ... Similar to previous best
## Run 169 stress 0.03273609
## ... Procrustes: rmse 5.025433e-06 max resid 1.494073e-05
## ... Similar to previous best
## Run 170 stress 0.03273609
## ... Procrustes: rmse 4.354437e-06 max resid 1.30248e-05
## ... Similar to previous best
## Run 171 stress 0.03273609
## ... Procrustes: rmse 1.682368e-06 max resid 4.589307e-06
## ... Similar to previous best
## Run 172 stress 0.03273609
## ... Procrustes: rmse 4.870607e-06 max resid 1.397912e-05
## ... Similar to previous best
## Run 173 stress 0.03273609
## ... Procrustes: rmse 2.462025e-06 max resid 4.68409e-06
## ... Similar to previous best
## Run 174 stress 0.03273609
## ... Procrustes: rmse 4.194551e-06 max resid 1.249752e-05
## ... Similar to previous best
## Run 175 stress 0.0327361
## ... Procrustes: rmse 1.00299e-05 max resid 3.013304e-05
## ... Similar to previous best
## Run 176 stress 0.03273609
## ... Procrustes: rmse 1.282063e-06 max resid 3.136817e-06
## ... Similar to previous best
## Run 177 stress 0.119189
## Run 178 stress 0.03273609
## ... Procrustes: rmse 3.614225e-06 max resid 7.494197e-06
## ... Similar to previous best
## Run 179 stress 0.3591107
## Run 180 stress 0.03273609
## ... Procrustes: rmse 1.628527e-06 max resid 3.692491e-06
## ... Similar to previous best
## Run 181 stress 0.1026254
## Run 182 stress 0.03273609
## ... Procrustes: rmse 3.448874e-06 max resid 1.001435e-05
## ... Similar to previous best
## Run 183 stress 0.0327361
## ... Procrustes: rmse 1.535928e-05 max resid 4.43667e-05
## ... Similar to previous best
## Run 184 stress 0.03273609
## ... Procrustes: rmse 7.51332e-06 max resid 2.412047e-05
## ... Similar to previous best
## Run 185 stress 0.03273609
## ... Procrustes: rmse 4.312564e-06 max resid 1.339217e-05
## ... Similar to previous best
## Run 186 stress 0.03273609
## ... Procrustes: rmse 1.201566e-06 max resid 2.595358e-06
## ... Similar to previous best
## Run 187 stress 0.03273609
## ... Procrustes: rmse 3.663951e-06 max resid 9.113969e-06
## ... Similar to previous best
## Run 188 stress 0.03273609
## ... Procrustes: rmse 3.555241e-06 max resid 9.433549e-06
## ... Similar to previous best
## Run 189 stress 0.1025379
## Run 190 stress 0.0327361
## ... Procrustes: rmse 1.50579e-05 max resid 4.667386e-05
## ... Similar to previous best
## Run 191 stress 0.03273609
## ... Procrustes: rmse 5.041484e-06 max resid 1.45e-05
## ... Similar to previous best
## Run 192 stress 0.102538
## Run 193 stress 0.03273609
## ... Procrustes: rmse 2.147904e-06 max resid 5.870666e-06
## ... Similar to previous best
## Run 194 stress 0.03273609
## ... New best solution
## ... Procrustes: rmse 4.176148e-07 max resid 1.028518e-06
## ... Similar to previous best
## Run 195 stress 0.1026254
## Run 196 stress 0.03273609
## ... Procrustes: rmse 1.73549e-06 max resid 5.272568e-06
## ... Similar to previous best
## Run 197 stress 0.03273609
## ... Procrustes: rmse 5.633069e-06 max resid 1.638239e-05
## ... Similar to previous best
## Run 198 stress 0.1026254
## Run 199 stress 0.1193633
## Run 200 stress 0.03273609
## ... Procrustes: rmse 4.6813e-06 max resid 1.041823e-05
## ... Similar to previous best
## Run 201 stress 0.03273609
## ... Procrustes: rmse 3.553029e-06 max resid 8.014526e-06
## ... Similar to previous best
## Run 202 stress 0.03273609
## ... Procrustes: rmse 5.551219e-06 max resid 1.587286e-05
## ... Similar to previous best
## Run 203 stress 0.03273609
## ... Procrustes: rmse 1.143832e-05 max resid 3.539612e-05
## ... Similar to previous best
## Run 204 stress 0.03273609
## ... Procrustes: rmse 1.733089e-06 max resid 3.929766e-06
## ... Similar to previous best
## Run 205 stress 0.1025379
## Run 206 stress 0.03273609
## ... Procrustes: rmse 2.970316e-06 max resid 8.796539e-06
## ... Similar to previous best
## Run 207 stress 0.03273609
## ... Procrustes: rmse 5.328352e-06 max resid 1.606892e-05
## ... Similar to previous best
## Run 208 stress 0.1193633
## Run 209 stress 0.03273609
## ... Procrustes: rmse 1.994221e-06 max resid 5.931792e-06
## ... Similar to previous best
## Run 210 stress 0.03273609
## ... Procrustes: rmse 3.683082e-06 max resid 1.01485e-05
## ... Similar to previous best
## Run 211 stress 0.03273609
## ... Procrustes: rmse 3.898361e-06 max resid 1.162526e-05
## ... Similar to previous best
## Run 212 stress 0.03273609
## ... Procrustes: rmse 2.097104e-06 max resid 6.396411e-06
## ... Similar to previous best
## Run 213 stress 0.1239147
## Run 214 stress 0.0327361
## ... Procrustes: rmse 5.148436e-06 max resid 1.089144e-05
## ... Similar to previous best
## Run 215 stress 0.03273609
## ... Procrustes: rmse 6.719565e-06 max resid 1.465769e-05
## ... Similar to previous best
## Run 216 stress 0.0327361
## ... Procrustes: rmse 9.247205e-06 max resid 2.791061e-05
## ... Similar to previous best
## Run 217 stress 0.03273609
## ... Procrustes: rmse 5.47044e-06 max resid 1.7201e-05
## ... Similar to previous best
## Run 218 stress 0.0327361
## ... Procrustes: rmse 1.701779e-05 max resid 5.197717e-05
## ... Similar to previous best
## Run 219 stress 0.03273609
## ... Procrustes: rmse 1.096464e-05 max resid 3.327262e-05
## ... Similar to previous best
## Run 220 stress 0.03273609
## ... Procrustes: rmse 4.792394e-06 max resid 1.459979e-05
## ... Similar to previous best
## Run 221 stress 0.0327361
## ... Procrustes: rmse 2.070369e-05 max resid 5.866064e-05
## ... Similar to previous best
## Run 222 stress 0.0327361
## ... Procrustes: rmse 2.728557e-05 max resid 8.544609e-05
## ... Similar to previous best
## Run 223 stress 0.03273609
## ... Procrustes: rmse 5.164596e-06 max resid 1.637263e-05
## ... Similar to previous best
## Run 224 stress 0.1026254
## Run 225 stress 0.119189
## Run 226 stress 0.03273609
## ... Procrustes: rmse 1.126411e-05 max resid 3.408828e-05
## ... Similar to previous best
## Run 227 stress 0.1026254
## Run 228 stress 0.1239147
## Run 229 stress 0.03273609
## ... Procrustes: rmse 1.834474e-06 max resid 5.03816e-06
## ... Similar to previous best
## Run 230 stress 0.1239041
## Run 231 stress 0.1382404
## Run 232 stress 0.03273609
## ... Procrustes: rmse 8.71134e-06 max resid 2.749788e-05
## ... Similar to previous best
## Run 233 stress 0.1026254
## Run 234 stress 0.1026254
## Run 235 stress 0.1026254
## Run 236 stress 0.03273609
## ... Procrustes: rmse 1.205038e-06 max resid 2.540011e-06
## ... Similar to previous best
## Run 237 stress 0.03273609
## ... Procrustes: rmse 3.474809e-06 max resid 8.043409e-06
## ... Similar to previous best
## Run 238 stress 0.119189
## Run 239 stress 0.03273609
## ... Procrustes: rmse 1.961913e-06 max resid 5.680669e-06
## ... Similar to previous best
## Run 240 stress 0.1025379
## Run 241 stress 0.1026254
## Run 242 stress 0.03273609
## ... Procrustes: rmse 2.565368e-06 max resid 7.331376e-06
## ... Similar to previous best
## Run 243 stress 0.03273609
## ... Procrustes: rmse 5.674992e-06 max resid 1.690994e-05
## ... Similar to previous best
## Run 244 stress 0.03273609
## ... Procrustes: rmse 6.639637e-06 max resid 2.006759e-05
## ... Similar to previous best
## Run 245 stress 0.03273609
## ... Procrustes: rmse 5.784872e-06 max resid 1.819886e-05
## ... Similar to previous best
## Run 246 stress 0.03273609
## ... Procrustes: rmse 5.686148e-06 max resid 1.452959e-05
## ... Similar to previous best
## Run 247 stress 0.03273609
## ... Procrustes: rmse 2.263239e-06 max resid 5.736892e-06
## ... Similar to previous best
## Run 248 stress 0.03273609
## ... Procrustes: rmse 7.780151e-07 max resid 2.126071e-06
## ... Similar to previous best
## Run 249 stress 0.1320278
## Run 250 stress 0.03273609
## ... Procrustes: rmse 4.366593e-06 max resid 1.310546e-05
## ... Similar to previous best
## Run 251 stress 0.0327361
## ... Procrustes: rmse 1.09609e-05 max resid 3.307252e-05
## ... Similar to previous best
## Run 252 stress 0.03273609
## ... Procrustes: rmse 6.032142e-06 max resid 1.65998e-05
## ... Similar to previous best
## Run 253 stress 0.0327361
## ... Procrustes: rmse 2.493857e-05 max resid 7.727561e-05
## ... Similar to previous best
## Run 254 stress 0.1025379
## Run 255 stress 0.03273609
## ... Procrustes: rmse 5.017139e-06 max resid 1.515765e-05
## ... Similar to previous best
## Run 256 stress 0.1025379
## Run 257 stress 0.03273609
## ... Procrustes: rmse 2.552566e-06 max resid 7.547066e-06
## ... Similar to previous best
## Run 258 stress 0.03273609
## ... Procrustes: rmse 9.422766e-06 max resid 2.927999e-05
## ... Similar to previous best
## Run 259 stress 0.3075686
## Run 260 stress 0.03273609
## ... Procrustes: rmse 8.904008e-06 max resid 2.751431e-05
## ... Similar to previous best
## Run 261 stress 0.1193633
## Run 262 stress 0.03273609
## ... Procrustes: rmse 9.952549e-06 max resid 3.044924e-05
## ... Similar to previous best
## Run 263 stress 0.03273609
## ... Procrustes: rmse 2.57389e-06 max resid 5.516817e-06
## ... Similar to previous best
## Run 264 stress 0.1025379
## Run 265 stress 0.03273609
## ... Procrustes: rmse 3.611741e-06 max resid 7.875376e-06
## ... Similar to previous best
## Run 266 stress 0.0327361
## ... Procrustes: rmse 1.254245e-05 max resid 3.725088e-05
## ... Similar to previous best
## Run 267 stress 0.1026254
## Run 268 stress 0.03273609
## ... Procrustes: rmse 2.436508e-06 max resid 5.782898e-06
## ... Similar to previous best
## Run 269 stress 0.1025379
## Run 270 stress 0.03273609
## ... Procrustes: rmse 4.448465e-06 max resid 1.130396e-05
## ... Similar to previous best
## Run 271 stress 0.0327361
## ... Procrustes: rmse 1.237811e-05 max resid 3.751761e-05
## ... Similar to previous best
## Run 272 stress 0.03273609
## ... Procrustes: rmse 2.459276e-06 max resid 7.133599e-06
## ... Similar to previous best
## Run 273 stress 0.03273609
## ... Procrustes: rmse 7.188115e-06 max resid 2.152407e-05
## ... Similar to previous best
## Run 274 stress 0.0327361
## ... Procrustes: rmse 1.52234e-05 max resid 4.511578e-05
## ... Similar to previous best
## Run 275 stress 0.03273609
## ... Procrustes: rmse 4.634945e-06 max resid 1.425042e-05
## ... Similar to previous best
## Run 276 stress 0.03273609
## ... Procrustes: rmse 3.013092e-06 max resid 7.622958e-06
## ... Similar to previous best
## Run 277 stress 0.1193634
## Run 278 stress 0.03273609
## ... Procrustes: rmse 6.743134e-06 max resid 2.122277e-05
## ... Similar to previous best
## Run 279 stress 0.1320373
## Run 280 stress 0.03273609
## ... Procrustes: rmse 2.982243e-06 max resid 8.256156e-06
## ... Similar to previous best
## Run 281 stress 0.03273609
## ... Procrustes: rmse 2.048361e-06 max resid 6.170249e-06
## ... Similar to previous best
## Run 282 stress 0.03273609
## ... Procrustes: rmse 6.585561e-06 max resid 2.019177e-05
## ... Similar to previous best
## Run 283 stress 0.03273609
## ... Procrustes: rmse 1.523607e-06 max resid 4.266775e-06
## ... Similar to previous best
## Run 284 stress 0.1239147
## Run 285 stress 0.03273609
## ... Procrustes: rmse 2.172729e-06 max resid 6.051095e-06
## ... Similar to previous best
## Run 286 stress 0.1382405
## Run 287 stress 0.03273609
## ... Procrustes: rmse 2.803763e-06 max resid 8.625548e-06
## ... Similar to previous best
## Run 288 stress 0.119189
## Run 289 stress 0.102538
## Run 290 stress 0.102538
## Run 291 stress 0.1026255
## Run 292 stress 0.102538
## Run 293 stress 0.1193633
## Run 294 stress 0.03273609
## ... Procrustes: rmse 5.376185e-06 max resid 1.686168e-05
## ... Similar to previous best
## Run 295 stress 0.0327361
## ... Procrustes: rmse 3.59751e-06 max resid 7.183176e-06
## ... Similar to previous best
## Run 296 stress 0.102538
## Run 297 stress 0.03273609
## ... Procrustes: rmse 2.729448e-06 max resid 7.532442e-06
## ... Similar to previous best
## Run 298 stress 0.03273609
## ... Procrustes: rmse 2.159184e-06 max resid 5.800295e-06
## ... Similar to previous best
## Run 299 stress 0.03273609
## ... Procrustes: rmse 4.330674e-06 max resid 1.225572e-05
## ... Similar to previous best
## Run 300 stress 0.03273609
## ... Procrustes: rmse 5.77288e-06 max resid 1.776209e-05
## ... Similar to previous best
## Run 301 stress 0.0327361
## ... Procrustes: rmse 9.915152e-06 max resid 2.97933e-05
## ... Similar to previous best
## Run 302 stress 0.03273609
## ... Procrustes: rmse 2.379892e-06 max resid 5.927751e-06
## ... Similar to previous best
## Run 303 stress 0.03273609
## ... Procrustes: rmse 4.139706e-06 max resid 1.230664e-05
## ... Similar to previous best
## Run 304 stress 0.0327361
## ... Procrustes: rmse 9.393644e-06 max resid 2.380388e-05
## ... Similar to previous best
## Run 305 stress 0.03273609
## ... Procrustes: rmse 5.663657e-06 max resid 1.692658e-05
## ... Similar to previous best
## Run 306 stress 0.03273609
## ... Procrustes: rmse 3.731735e-06 max resid 1.186188e-05
## ... Similar to previous best
## Run 307 stress 0.03273609
## ... Procrustes: rmse 2.87733e-06 max resid 5.783717e-06
## ... Similar to previous best
## Run 308 stress 0.1026254
## Run 309 stress 0.0327361
## ... Procrustes: rmse 1.661769e-05 max resid 5.115195e-05
## ... Similar to previous best
## Run 310 stress 0.03273609
## ... Procrustes: rmse 5.163978e-06 max resid 1.610943e-05
## ... Similar to previous best
## Run 311 stress 0.03273609
## ... Procrustes: rmse 2.224703e-06 max resid 5.774503e-06
## ... Similar to previous best
## Run 312 stress 0.03273609
## ... Procrustes: rmse 5.04221e-06 max resid 1.491075e-05
## ... Similar to previous best
## Run 313 stress 0.03273609
## ... Procrustes: rmse 4.464962e-06 max resid 1.144232e-05
## ... Similar to previous best
## Run 314 stress 0.0327361
## ... Procrustes: rmse 2.58063e-05 max resid 7.954802e-05
## ... Similar to previous best
## Run 315 stress 0.03273609
## ... Procrustes: rmse 1.323889e-06 max resid 3.244421e-06
## ... Similar to previous best
## Run 316 stress 0.1026255
## Run 317 stress 0.1389215
## Run 318 stress 0.03273609
## ... Procrustes: rmse 2.420688e-06 max resid 7.646508e-06
## ... Similar to previous best
## Run 319 stress 0.03273609
## ... Procrustes: rmse 2.36179e-06 max resid 6.90797e-06
## ... Similar to previous best
## Run 320 stress 0.0327361
## ... Procrustes: rmse 1.258421e-05 max resid 3.744479e-05
## ... Similar to previous best
## Run 321 stress 0.1026254
## Run 322 stress 0.1026254
## Run 323 stress 0.03273609
## ... Procrustes: rmse 4.762582e-06 max resid 1.192188e-05
## ... Similar to previous best
## Run 324 stress 0.03273609
## ... Procrustes: rmse 3.851721e-06 max resid 1.201191e-05
## ... Similar to previous best
## Run 325 stress 0.03273609
## ... Procrustes: rmse 4.913695e-06 max resid 1.08596e-05
## ... Similar to previous best
## Run 326 stress 0.03273609
## ... Procrustes: rmse 4.528327e-06 max resid 1.104738e-05
## ... Similar to previous best
## Run 327 stress 0.03273609
## ... Procrustes: rmse 5.414833e-06 max resid 1.660528e-05
## ... Similar to previous best
## Run 328 stress 0.03273609
## ... Procrustes: rmse 4.269373e-06 max resid 1.299122e-05
## ... Similar to previous best
## Run 329 stress 0.03273609
## ... Procrustes: rmse 2.858424e-06 max resid 7.948347e-06
## ... Similar to previous best
## Run 330 stress 0.03273609
## ... Procrustes: rmse 3.653781e-06 max resid 1.076476e-05
## ... Similar to previous best
## Run 331 stress 0.03273609
## ... Procrustes: rmse 1.443746e-06 max resid 3.117505e-06
## ... Similar to previous best
## Run 332 stress 0.0327361
## ... Procrustes: rmse 5.199148e-06 max resid 1.099245e-05
## ... Similar to previous best
## Run 333 stress 0.123904
## Run 334 stress 0.03273609
## ... Procrustes: rmse 5.58445e-06 max resid 1.428199e-05
## ... Similar to previous best
## Run 335 stress 0.1193633
## Run 336 stress 0.03273609
## ... Procrustes: rmse 2.026784e-06 max resid 4.133671e-06
## ... Similar to previous best
## Run 337 stress 0.1025379
## Run 338 stress 0.03273609
## ... Procrustes: rmse 4.407755e-06 max resid 1.32061e-05
## ... Similar to previous best
## Run 339 stress 0.1025379
## Run 340 stress 0.0327361
## ... Procrustes: rmse 1.663041e-05 max resid 5.084815e-05
## ... Similar to previous best
## Run 341 stress 0.03273609
## ... Procrustes: rmse 5.479907e-06 max resid 1.61636e-05
## ... Similar to previous best
## Run 342 stress 0.03273609
## ... Procrustes: rmse 4.235886e-06 max resid 1.311145e-05
## ... Similar to previous best
## Run 343 stress 0.03273609
## ... Procrustes: rmse 6.356196e-06 max resid 1.946746e-05
## ... Similar to previous best
## Run 344 stress 0.102538
## Run 345 stress 0.1026254
## Run 346 stress 0.03273609
## ... Procrustes: rmse 6.016378e-06 max resid 1.557909e-05
## ... Similar to previous best
## Run 347 stress 0.0327361
## ... Procrustes: rmse 6.631259e-06 max resid 1.715027e-05
## ... Similar to previous best
## Run 348 stress 0.03273609
## ... Procrustes: rmse 2.890328e-06 max resid 8.655616e-06
## ... Similar to previous best
## Run 349 stress 0.1241389
## Run 350 stress 0.03273609
## ... Procrustes: rmse 2.102233e-06 max resid 6.22689e-06
## ... Similar to previous best
## Run 351 stress 0.03273609
## ... Procrustes: rmse 7.368263e-07 max resid 2.010642e-06
## ... Similar to previous best
## Run 352 stress 0.03273609
## ... Procrustes: rmse 6.135889e-06 max resid 1.671441e-05
## ... Similar to previous best
## Run 353 stress 0.1026254
## Run 354 stress 0.03273609
## ... Procrustes: rmse 4.862372e-06 max resid 1.557289e-05
## ... Similar to previous best
## Run 355 stress 0.03273609
## ... Procrustes: rmse 1.16244e-05 max resid 3.556732e-05
## ... Similar to previous best
## Run 356 stress 0.03273609
## ... Procrustes: rmse 4.983195e-06 max resid 1.386059e-05
## ... Similar to previous best
## Run 357 stress 0.1026254
## Run 358 stress 0.03273609
## ... Procrustes: rmse 1.905143e-06 max resid 5.338013e-06
## ... Similar to previous best
## Run 359 stress 0.1193633
## Run 360 stress 0.03273609
## ... Procrustes: rmse 3.752564e-06 max resid 1.111506e-05
## ... Similar to previous best
## Run 361 stress 0.03273609
## ... Procrustes: rmse 8.557808e-06 max resid 2.712815e-05
## ... Similar to previous best
## Run 362 stress 0.03273609
## ... Procrustes: rmse 4.424586e-06 max resid 1.257257e-05
## ... Similar to previous best
## Run 363 stress 0.0327361
## ... Procrustes: rmse 1.61112e-05 max resid 4.960432e-05
## ... Similar to previous best
## Run 364 stress 0.03273609
## ... Procrustes: rmse 3.255825e-06 max resid 1.027294e-05
## ... Similar to previous best
## Run 365 stress 0.03273609
## ... Procrustes: rmse 2.532918e-06 max resid 7.469272e-06
## ... Similar to previous best
## Run 366 stress 0.119189
## Run 367 stress 0.102538
## Run 368 stress 0.1026255
## Run 369 stress 0.1026254
## Run 370 stress 0.1025379
## Run 371 stress 0.03273609
## ... Procrustes: rmse 1.86358e-06 max resid 5.708662e-06
## ... Similar to previous best
## Run 372 stress 0.03273609
## ... Procrustes: rmse 4.28738e-06 max resid 1.116633e-05
## ... Similar to previous best
## Run 373 stress 0.03273609
## ... Procrustes: rmse 3.132814e-06 max resid 8.803817e-06
## ... Similar to previous best
## Run 374 stress 0.03273609
## ... Procrustes: rmse 1.29503e-06 max resid 4.038999e-06
## ... Similar to previous best
## Run 375 stress 0.03273609
## ... Procrustes: rmse 5.48552e-06 max resid 1.551617e-05
## ... Similar to previous best
## Run 376 stress 0.0327361
## ... Procrustes: rmse 2.228402e-05 max resid 6.675026e-05
## ... Similar to previous best
## Run 377 stress 0.1239148
## Run 378 stress 0.1026254
## Run 379 stress 0.03273609
## ... Procrustes: rmse 9.309612e-06 max resid 2.247421e-05
## ... Similar to previous best
## Run 380 stress 0.03273609
## ... Procrustes: rmse 6.522704e-06 max resid 2.03885e-05
## ... Similar to previous best
## Run 381 stress 0.03273609
## ... Procrustes: rmse 2.169156e-06 max resid 5.020621e-06
## ... Similar to previous best
## Run 382 stress 0.03273609
## ... Procrustes: rmse 7.565091e-07 max resid 1.316075e-06
## ... Similar to previous best
## Run 383 stress 0.03273609
## ... Procrustes: rmse 4.062634e-06 max resid 1.051185e-05
## ... Similar to previous best
## Run 384 stress 0.1026255
## Run 385 stress 0.1026254
## Run 386 stress 0.03273609
## ... Procrustes: rmse 2.477441e-06 max resid 6.700553e-06
## ... Similar to previous best
## Run 387 stress 0.03273609
## ... Procrustes: rmse 7.074115e-06 max resid 2.155912e-05
## ... Similar to previous best
## Run 388 stress 0.03273609
## ... Procrustes: rmse 1.037609e-05 max resid 3.248998e-05
## ... Similar to previous best
## Run 389 stress 0.119189
## Run 390 stress 0.124139
## Run 391 stress 0.0327361
## ... Procrustes: rmse 1.378645e-05 max resid 4.203822e-05
## ... Similar to previous best
## Run 392 stress 0.1025379
## Run 393 stress 0.1382404
## Run 394 stress 0.0327361
## ... Procrustes: rmse 1.199947e-05 max resid 3.70805e-05
## ... Similar to previous best
## Run 395 stress 0.1025379
## Run 396 stress 0.03273609
## ... Procrustes: rmse 4.549214e-06 max resid 1.402129e-05
## ... Similar to previous best
## Run 397 stress 0.1239147
## Run 398 stress 0.03273609
## ... Procrustes: rmse 7.624999e-06 max resid 2.370894e-05
## ... Similar to previous best
## Run 399 stress 0.1026254
## Run 400 stress 0.1026254
## Run 401 stress 0.03273609
## ... Procrustes: rmse 1.782403e-06 max resid 5.10772e-06
## ... Similar to previous best
## Run 402 stress 0.03273609
## ... Procrustes: rmse 8.813266e-06 max resid 2.727746e-05
## ... Similar to previous best
## Run 403 stress 0.03273609
## ... Procrustes: rmse 6.759323e-07 max resid 1.267771e-06
## ... Similar to previous best
## Run 404 stress 0.1025379
## Run 405 stress 0.1025379
## Run 406 stress 0.03273609
## ... Procrustes: rmse 1.411669e-06 max resid 3.630858e-06
## ... Similar to previous best
## Run 407 stress 0.1026254
## Run 408 stress 0.03273609
## ... Procrustes: rmse 1.343735e-06 max resid 2.313816e-06
## ... Similar to previous best
## Run 409 stress 0.1026254
## Run 410 stress 0.1026254
## Run 411 stress 0.03273609
## ... Procrustes: rmse 3.131731e-06 max resid 9.884913e-06
## ... Similar to previous best
## Run 412 stress 0.0327361
## ... Procrustes: rmse 1.133164e-05 max resid 2.592931e-05
## ... Similar to previous best
## Run 413 stress 0.1026254
## Run 414 stress 0.1025379
## Run 415 stress 0.03273609
## ... Procrustes: rmse 4.709947e-06 max resid 1.255103e-05
## ... Similar to previous best
## Run 416 stress 0.03273609
## ... Procrustes: rmse 7.251479e-06 max resid 2.088932e-05
## ... Similar to previous best
## Run 417 stress 0.03273609
## ... Procrustes: rmse 5.599821e-06 max resid 1.755535e-05
## ... Similar to previous best
## Run 418 stress 0.03273609
## ... Procrustes: rmse 2.812782e-06 max resid 7.386901e-06
## ... Similar to previous best
## Run 419 stress 0.1025379
## Run 420 stress 0.03273609
## ... Procrustes: rmse 1.161891e-06 max resid 2.805006e-06
## ... Similar to previous best
## Run 421 stress 0.03273609
## ... Procrustes: rmse 5.216616e-06 max resid 1.557057e-05
## ... Similar to previous best
## Run 422 stress 0.03273609
## ... Procrustes: rmse 1.774725e-06 max resid 3.399965e-06
## ... Similar to previous best
## Run 423 stress 0.03273609
## ... Procrustes: rmse 4.683533e-06 max resid 1.444488e-05
## ... Similar to previous best
## Run 424 stress 0.1026254
## Run 425 stress 0.1026254
## Run 426 stress 0.03273609
## ... Procrustes: rmse 5.604004e-06 max resid 1.693361e-05
## ... Similar to previous best
## Run 427 stress 0.1025379
## Run 428 stress 0.1026255
## Run 429 stress 0.1241389
## Run 430 stress 0.03273609
## ... Procrustes: rmse 5.208333e-06 max resid 1.356333e-05
## ... Similar to previous best
## Run 431 stress 0.119189
## Run 432 stress 0.03273609
## ... Procrustes: rmse 3.328965e-06 max resid 1.011279e-05
## ... Similar to previous best
## Run 433 stress 0.0327361
## ... Procrustes: rmse 1.180648e-05 max resid 3.326966e-05
## ... Similar to previous best
## Run 434 stress 0.03273609
## ... Procrustes: rmse 3.714587e-06 max resid 9.257622e-06
## ... Similar to previous best
## Run 435 stress 0.03273609
## ... Procrustes: rmse 3.277131e-06 max resid 9.784098e-06
## ... Similar to previous best
## Run 436 stress 0.03273609
## ... Procrustes: rmse 1.619679e-06 max resid 4.346195e-06
## ... Similar to previous best
## Run 437 stress 0.03273609
## ... Procrustes: rmse 4.386807e-06 max resid 1.220562e-05
## ... Similar to previous best
## Run 438 stress 0.03273609
## ... Procrustes: rmse 4.461803e-07 max resid 6.594348e-07
## ... Similar to previous best
## Run 439 stress 0.03273609
## ... Procrustes: rmse 6.795105e-06 max resid 2.107082e-05
## ... Similar to previous best
## Run 440 stress 0.0327361
## ... Procrustes: rmse 1.541858e-05 max resid 4.792882e-05
## ... Similar to previous best
## Run 441 stress 0.03273609
## ... Procrustes: rmse 6.02371e-06 max resid 1.860828e-05
## ... Similar to previous best
## Run 442 stress 0.1026254
## Run 443 stress 0.03273609
## ... Procrustes: rmse 3.224985e-06 max resid 1.04575e-05
## ... Similar to previous best
## Run 444 stress 0.03273609
## ... Procrustes: rmse 8.899058e-06 max resid 2.774766e-05
## ... Similar to previous best
## Run 445 stress 0.03273609
## ... Procrustes: rmse 3.132254e-06 max resid 9.714767e-06
## ... Similar to previous best
## Run 446 stress 0.0327361
## ... Procrustes: rmse 1.16477e-05 max resid 3.64949e-05
## ... Similar to previous best
## Run 447 stress 0.03273609
## ... Procrustes: rmse 4.37645e-06 max resid 1.455529e-05
## ... Similar to previous best
## Run 448 stress 0.0327361
## ... Procrustes: rmse 2.070463e-05 max resid 6.250997e-05
## ... Similar to previous best
## Run 449 stress 0.03273609
## ... Procrustes: rmse 2.101364e-06 max resid 6.417735e-06
## ... Similar to previous best
## Run 450 stress 0.1026254
## Run 451 stress 0.0327361
## ... Procrustes: rmse 1.67303e-05 max resid 5.160718e-05
## ... Similar to previous best
## Run 452 stress 0.03273609
## ... Procrustes: rmse 4.969646e-06 max resid 1.535292e-05
## ... Similar to previous best
## Run 453 stress 0.03273609
## ... Procrustes: rmse 1.484303e-06 max resid 4.390206e-06
## ... Similar to previous best
## Run 454 stress 0.1026254
## Run 455 stress 0.1025381
## Run 456 stress 0.03273609
## ... Procrustes: rmse 3.493141e-06 max resid 8.964235e-06
## ... Similar to previous best
## Run 457 stress 0.03273609
## ... Procrustes: rmse 1.05513e-05 max resid 3.319179e-05
## ... Similar to previous best
## Run 458 stress 0.03273609
## ... Procrustes: rmse 3.580994e-06 max resid 1.055737e-05
## ... Similar to previous best
## Run 459 stress 0.03273609
## ... Procrustes: rmse 4.532921e-06 max resid 1.369286e-05
## ... Similar to previous best
## Run 460 stress 0.03273609
## ... Procrustes: rmse 3.008118e-06 max resid 8.232466e-06
## ... Similar to previous best
## Run 461 stress 0.03273609
## ... Procrustes: rmse 5.173157e-06 max resid 1.016316e-05
## ... Similar to previous best
## Run 462 stress 0.03273609
## ... Procrustes: rmse 4.403355e-06 max resid 1.282222e-05
## ... Similar to previous best
## Run 463 stress 0.03273609
## ... Procrustes: rmse 9.713546e-06 max resid 2.370282e-05
## ... Similar to previous best
## Run 464 stress 0.03273609
## ... Procrustes: rmse 5.000612e-06 max resid 1.461566e-05
## ... Similar to previous best
## Run 465 stress 0.03273609
## ... Procrustes: rmse 3.488312e-06 max resid 9.625365e-06
## ... Similar to previous best
## Run 466 stress 0.03273609
## ... Procrustes: rmse 9.865902e-07 max resid 2.649324e-06
## ... Similar to previous best
## Run 467 stress 0.03273609
## ... Procrustes: rmse 5.35036e-06 max resid 1.632638e-05
## ... Similar to previous best
## Run 468 stress 0.0327361
## ... Procrustes: rmse 1.82891e-05 max resid 5.704489e-05
## ... Similar to previous best
## Run 469 stress 0.03273609
## ... Procrustes: rmse 3.00409e-06 max resid 7.973463e-06
## ... Similar to previous best
## Run 470 stress 0.03273609
## ... Procrustes: rmse 1.948751e-06 max resid 5.949458e-06
## ... Similar to previous best
## Run 471 stress 0.03273609
## ... Procrustes: rmse 7.952226e-06 max resid 2.258835e-05
## ... Similar to previous best
## Run 472 stress 0.1026254
## Run 473 stress 0.03273609
## ... Procrustes: rmse 6.120083e-06 max resid 1.869139e-05
## ... Similar to previous best
## Run 474 stress 0.1320278
## Run 475 stress 0.03273609
## ... Procrustes: rmse 6.260614e-06 max resid 1.94765e-05
## ... Similar to previous best
## Run 476 stress 0.03273609
## ... Procrustes: rmse 4.852423e-06 max resid 1.159723e-05
## ... Similar to previous best
## Run 477 stress 0.03273609
## ... Procrustes: rmse 1.940998e-06 max resid 5.208785e-06
## ... Similar to previous best
## Run 478 stress 0.03273609
## ... Procrustes: rmse 2.103282e-06 max resid 5.552324e-06
## ... Similar to previous best
## Run 479 stress 0.0327361
## ... Procrustes: rmse 2.679306e-05 max resid 7.800851e-05
## ... Similar to previous best
## Run 480 stress 0.03273609
## ... Procrustes: rmse 5.627232e-06 max resid 1.495437e-05
## ... Similar to previous best
## Run 481 stress 0.03273609
## ... Procrustes: rmse 3.252313e-06 max resid 7.344249e-06
## ... Similar to previous best
## Run 482 stress 0.1239138
## Run 483 stress 0.03273609
## ... Procrustes: rmse 4.130935e-06 max resid 1.15693e-05
## ... Similar to previous best
## Run 484 stress 0.03273609
## ... Procrustes: rmse 1.097042e-05 max resid 3.369157e-05
## ... Similar to previous best
## Run 485 stress 0.03273609
## ... Procrustes: rmse 4.930576e-06 max resid 1.471301e-05
## ... Similar to previous best
## Run 486 stress 0.03273609
## ... Procrustes: rmse 2.75271e-06 max resid 6.154859e-06
## ... Similar to previous best
## Run 487 stress 0.03273613
## ... Procrustes: rmse 3.328873e-05 max resid 9.597701e-05
## ... Similar to previous best
## Run 488 stress 0.03273609
## ... Procrustes: rmse 1.135175e-06 max resid 3.572808e-06
## ... Similar to previous best
## Run 489 stress 0.1239147
## Run 490 stress 0.124139
## Run 491 stress 0.1239144
## Run 492 stress 0.03273609
## ... Procrustes: rmse 5.56613e-06 max resid 1.729447e-05
## ... Similar to previous best
## Run 493 stress 0.03273609
## ... Procrustes: rmse 5.19199e-06 max resid 1.464477e-05
## ... Similar to previous best
## Run 494 stress 0.1026254
## Run 495 stress 0.03273609
## ... Procrustes: rmse 7.641592e-06 max resid 2.300815e-05
## ... Similar to previous best
## Run 496 stress 0.03273609
## ... Procrustes: rmse 7.828677e-06 max resid 2.415286e-05
## ... Similar to previous best
## Run 497 stress 0.1025379
## Run 498 stress 0.0327361
## ... Procrustes: rmse 1.773506e-05 max resid 5.481289e-05
## ... Similar to previous best
## Run 499 stress 0.1026253
## Run 500 stress 0.03273609
## ... Procrustes: rmse 6.164117e-06 max resid 1.889164e-05
## ... Similar to previous best
## *** Best solution repeated 211 times# Ocean sites and mixed lakes
enveom_NMDS <- metaMDS(enveom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 9.489756e-05
## Run 1 stress 9.918246e-05
## ... Procrustes: rmse 0.01529358 max resid 0.02534253
## Run 2 stress 0.002338113
## Run 3 stress 0.00233812
## Run 4 stress 0.002338114
## Run 5 stress 0.0001266962
## ... Procrustes: rmse 0.01492996 max resid 0.02383158
## Run 6 stress 0.1773328
## Run 7 stress 9.299582e-05
## ... New best solution
## ... Procrustes: rmse 0.01615758 max resid 0.02945311
## Run 8 stress 0.2452429
## Run 9 stress 9.51619e-05
## ... Procrustes: rmse 0.02334778 max resid 0.04110853
## Run 10 stress 9.988801e-05
## ... Procrustes: rmse 0.003468875 max resid 0.006098973
## ... Similar to previous best
## Run 11 stress 0.002338121
## Run 12 stress 9.994014e-05
## ... Procrustes: rmse 0.01820849 max resid 0.04463759
## Run 13 stress 9.998657e-05
## ... Procrustes: rmse 0.003444915 max resid 0.006079729
## ... Similar to previous best
## Run 14 stress 0.002338128
## Run 15 stress 9.581594e-05
## ... Procrustes: rmse 0.02003386 max resid 0.03527761
## Run 16 stress 0.002338121
## Run 17 stress 9.994882e-05
## ... Procrustes: rmse 0.001918082 max resid 0.003026217
## ... Similar to previous best
## Run 18 stress 0.000100964
## ... Procrustes: rmse 0.003464208 max resid 0.006125628
## ... Similar to previous best
## Run 19 stress 9.963139e-05
## ... Procrustes: rmse 0.02121094 max resid 0.0358703
## Run 20 stress 0.0001012952
## ... Procrustes: rmse 0.00348333 max resid 0.006200753
## ... Similar to previous best
## Run 21 stress 9.683966e-05
## ... Procrustes: rmse 0.03312339 max resid 0.07191829
## Run 22 stress 0.0001011302
## ... Procrustes: rmse 0.003488663 max resid 0.006165135
## ... Similar to previous best
## Run 23 stress 0.0001029916
## ... Procrustes: rmse 0.003686717 max resid 0.006568317
## ... Similar to previous best
## Run 24 stress 0.002338108
## Run 25 stress 0.002338129
## Run 26 stress 0.002338103
## Run 27 stress 0.002338109
## Run 28 stress 0.002338115
## Run 29 stress 0.002338122
## Run 30 stress 0.00233812
## Run 31 stress 8.757713e-05
## ... New best solution
## ... Procrustes: rmse 0.03311747 max resid 0.07153082
## Run 32 stress 0.002338102
## Run 33 stress 9.986099e-05
## ... Procrustes: rmse 0.03065183 max resid 0.06740168
## Run 34 stress 0.2556143
## Run 35 stress 9.952061e-05
## ... Procrustes: rmse 0.01937533 max resid 0.03440931
## Run 36 stress 9.853358e-05
## ... Procrustes: rmse 0.03405624 max resid 0.07285084
## Run 37 stress 9.620011e-05
## ... Procrustes: rmse 0.03472107 max resid 0.07140983
## Run 38 stress 0.002338104
## Run 39 stress 0.002338115
## Run 40 stress 0.002338114
## Run 41 stress 0.002338118
## Run 42 stress 0.002338117
## Run 43 stress 0.0001833456
## ... Procrustes: rmse 0.02605027 max resid 0.05820748
## Run 44 stress 0.0001008362
## ... Procrustes: rmse 0.03071607 max resid 0.06751919
## Run 45 stress 0.002338122
## Run 46 stress 0.002338117
## Run 47 stress 0.002338097
## Run 48 stress 0.002338111
## Run 49 stress 0.0001310699
## ... Procrustes: rmse 0.02927053 max resid 0.06503404
## Run 50 stress 9.518877e-05
## ... Procrustes: rmse 0.03077446 max resid 0.05493085
## Run 51 stress 9.992378e-05
## ... Procrustes: rmse 0.03077083 max resid 0.06755942
## Run 52 stress 9.931638e-05
## ... Procrustes: rmse 0.003261029 max resid 0.006257843
## ... Similar to previous best
## Run 53 stress 0.002338114
## Run 54 stress 9.356369e-05
## ... Procrustes: rmse 0.01684052 max resid 0.0263602
## Run 55 stress 0.0001034301
## ... Procrustes: rmse 0.03068978 max resid 0.06742265
## Run 56 stress 0.0001642478
## ... Procrustes: rmse 0.02400984 max resid 0.05750021
## Run 57 stress 0.1773328
## Run 58 stress 9.979936e-05
## ... Procrustes: rmse 0.03199599 max resid 0.0697039
## Run 59 stress 9.954595e-05
## ... Procrustes: rmse 0.02388341 max resid 0.03752808
## Run 60 stress 0.0001128788
## ... Procrustes: rmse 0.03021195 max resid 0.06666317
## Run 61 stress 9.967872e-05
## ... Procrustes: rmse 0.01951093 max resid 0.03925764
## Run 62 stress 0.0001000095
## ... Procrustes: rmse 0.0307626 max resid 0.06756609
## Run 63 stress 0.3407338
## Run 64 stress 9.984854e-05
## ... Procrustes: rmse 0.03088131 max resid 0.06777447
## Run 65 stress 7.383966e-05
## ... New best solution
## ... Procrustes: rmse 0.01068106 max resid 0.02885574
## Run 66 stress 9.967155e-05
## ... Procrustes: rmse 0.02182356 max resid 0.04007107
## Run 67 stress 9.260365e-05
## ... Procrustes: rmse 0.01048289 max resid 0.02565476
## Run 68 stress 0.002338123
## Run 69 stress 0.00233811
## Run 70 stress 9.957568e-05
## ... Procrustes: rmse 0.01061495 max resid 0.02877772
## Run 71 stress 9.930005e-05
## ... Procrustes: rmse 0.01890491 max resid 0.02678239
## Run 72 stress 0.1773328
## Run 73 stress 9.955638e-05
## ... Procrustes: rmse 0.02252599 max resid 0.03512424
## Run 74 stress 9.958419e-05
## ... Procrustes: rmse 0.01164326 max resid 0.02080817
## Run 75 stress 9.402781e-05
## ... Procrustes: rmse 0.01013087 max resid 0.01932047
## Run 76 stress 9.09701e-05
## ... Procrustes: rmse 0.01063234 max resid 0.02870083
## Run 77 stress 0.00233812
## Run 78 stress 0.1773328
## Run 79 stress 0.002338122
## Run 80 stress 9.983325e-05
## ... Procrustes: rmse 0.009659994 max resid 0.02021684
## Run 81 stress 0.0001684121
## ... Procrustes: rmse 0.01780275 max resid 0.03322742
## Run 82 stress 0.1773328
## Run 83 stress 0.002338119
## Run 84 stress 0.002338122
## Run 85 stress 0.00233813
## Run 86 stress 9.907035e-05
## ... Procrustes: rmse 0.01368449 max resid 0.02043953
## Run 87 stress 9.849976e-05
## ... Procrustes: rmse 0.02546703 max resid 0.04044859
## Run 88 stress 0.002338119
## Run 89 stress 0.002338123
## Run 90 stress 9.357091e-05
## ... Procrustes: rmse 0.005696003 max resid 0.01160514
## Run 91 stress 0.00233812
## Run 92 stress 9.972318e-05
## ... Procrustes: rmse 0.0267766 max resid 0.04733354
## Run 93 stress 0.002338119
## Run 94 stress 0.002338093
## Run 95 stress 0.00233812
## Run 96 stress 0.0001859151
## ... Procrustes: rmse 0.01698626 max resid 0.03125852
## Run 97 stress 0.00233812
## Run 98 stress 9.93877e-05
## ... Procrustes: rmse 0.0191199 max resid 0.02710917
## Run 99 stress 0.1773328
## Run 100 stress 0.002338125
## Run 101 stress 9.921029e-05
## ... Procrustes: rmse 0.02607799 max resid 0.04241351
## Run 102 stress 0.1773328
## Run 103 stress 0.002338098
## Run 104 stress 0.002338113
## Run 105 stress 9.282001e-05
## ... Procrustes: rmse 0.01112126 max resid 0.03034865
## Run 106 stress 0.002338117
## Run 107 stress 0.002338126
## Run 108 stress 9.977925e-05
## ... Procrustes: rmse 0.01113561 max resid 0.01737075
## Run 109 stress 0.002338123
## Run 110 stress 0.002338122
## Run 111 stress 0.002338105
## Run 112 stress 0.002338114
## Run 113 stress 0.002338106
## Run 114 stress 0.002338117
## Run 115 stress 0.002338119
## Run 116 stress 9.96868e-05
## ... Procrustes: rmse 0.01072706 max resid 0.02901102
## Run 117 stress 9.978916e-05
## ... Procrustes: rmse 0.01215864 max resid 0.02000368
## Run 118 stress 9.84174e-05
## ... Procrustes: rmse 0.0244364 max resid 0.03804195
## Run 119 stress 9.628567e-05
## ... Procrustes: rmse 0.01012352 max resid 0.0257101
## Run 120 stress 0.2363691
## Run 121 stress 9.986169e-05
## ... Procrustes: rmse 0.01447809 max resid 0.0221124
## Run 122 stress 9.714249e-05
## ... Procrustes: rmse 0.01899456 max resid 0.02669529
## Run 123 stress 0.002338122
## Run 124 stress 0.0001714223
## ... Procrustes: rmse 0.01615638 max resid 0.02917364
## Run 125 stress 9.99961e-05
## ... Procrustes: rmse 0.01010753 max resid 0.02593132
## Run 126 stress 0.002338111
## Run 127 stress 0.002338119
## Run 128 stress 9.945231e-05
## ... Procrustes: rmse 0.01018126 max resid 0.02617107
## Run 129 stress 0.1773328
## Run 130 stress 0.0001057312
## ... Procrustes: rmse 0.02116886 max resid 0.03903956
## Run 131 stress 0.1773328
## Run 132 stress 0.002338126
## Run 133 stress 0.002338116
## Run 134 stress 0.0001759163
## ... Procrustes: rmse 0.0176659 max resid 0.03295192
## Run 135 stress 9.963239e-05
## ... Procrustes: rmse 0.01326456 max resid 0.02188796
## Run 136 stress 0.0001002143
## ... Procrustes: rmse 0.02115603 max resid 0.03904213
## Run 137 stress 9.903179e-05
## ... Procrustes: rmse 0.01938099 max resid 0.02743644
## Run 138 stress 0.0001612178
## ... Procrustes: rmse 0.01657181 max resid 0.03159126
## Run 139 stress 0.0001066535
## ... Procrustes: rmse 0.02113975 max resid 0.03902746
## Run 140 stress 9.984019e-05
## ... Procrustes: rmse 0.01332586 max resid 0.02051778
## Run 141 stress 9.563565e-05
## ... Procrustes: rmse 0.0109748 max resid 0.02992942
## Run 142 stress 0.00233813
## Run 143 stress 0.002338114
## Run 144 stress 9.827452e-05
## ... Procrustes: rmse 0.00782624 max resid 0.01665922
## Run 145 stress 0.002338122
## Run 146 stress 9.990668e-05
## ... Procrustes: rmse 0.02084901 max resid 0.03851955
## Run 147 stress 0.3407334
## Run 148 stress 0.00233811
## Run 149 stress 0.2538542
## Run 150 stress 0.00010024
## ... Procrustes: rmse 0.02113643 max resid 0.0390172
## Run 151 stress 9.202601e-05
## ... Procrustes: rmse 0.01061951 max resid 0.02735753
## Run 152 stress 0.002338115
## Run 153 stress 0.3275206
## Run 154 stress 9.712203e-05
## ... Procrustes: rmse 0.002778874 max resid 0.005513749
## ... Similar to previous best
## Run 155 stress 0.002338123
## Run 156 stress 9.983707e-05
## ... Procrustes: rmse 0.01410523 max resid 0.02187237
## Run 157 stress 0.002338118
## Run 158 stress 0.0001107407
## ... Procrustes: rmse 0.01036886 max resid 0.02306548
## Run 159 stress 9.532674e-05
## ... Procrustes: rmse 0.01096064 max resid 0.02061917
## Run 160 stress 0.002338122
## Run 161 stress 0.002338118
## Run 162 stress 0.0001003917
## ... Procrustes: rmse 0.02118507 max resid 0.03903097
## Run 163 stress 0.00233809
## Run 164 stress 0.0001823516
## ... Procrustes: rmse 0.01702858 max resid 0.03160183
## Run 165 stress 9.992116e-05
## ... Procrustes: rmse 0.007575286 max resid 0.01862963
## Run 166 stress 0.002338112
## Run 167 stress 0.002338115
## Run 168 stress 9.98124e-05
## ... Procrustes: rmse 0.0115293 max resid 0.0289416
## Run 169 stress 8.673557e-05
## ... Procrustes: rmse 0.01041983 max resid 0.02630407
## Run 170 stress 0.0001053433
## ... Procrustes: rmse 0.02117231 max resid 0.03906855
## Run 171 stress 0.0001003302
## ... Procrustes: rmse 0.02111417 max resid 0.03896459
## Run 172 stress 9.866941e-05
## ... Procrustes: rmse 0.01095255 max resid 0.02989206
## Run 173 stress 0.002338127
## Run 174 stress 9.953843e-05
## ... Procrustes: rmse 0.01056256 max resid 0.02845988
## Run 175 stress 0.0001029941
## ... Procrustes: rmse 0.02102281 max resid 0.03880663
## Run 176 stress 0.00233813
## Run 177 stress 0.00233812
## Run 178 stress 0.1773328
## Run 179 stress 0.002338118
## Run 180 stress 9.747923e-05
## ... Procrustes: rmse 0.02253153 max resid 0.03515224
## Run 181 stress 0.0001829404
## ... Procrustes: rmse 0.01694791 max resid 0.03073266
## Run 182 stress 0.1773328
## Run 183 stress 0.00233811
## Run 184 stress 0.002338126
## Run 185 stress 9.752811e-05
## ... Procrustes: rmse 0.01076552 max resid 0.02918171
## Run 186 stress 0.002338119
## Run 187 stress 9.911902e-05
## ... Procrustes: rmse 0.01259691 max resid 0.02239808
## Run 188 stress 0.000162586
## ... Procrustes: rmse 0.01751449 max resid 0.03367646
## Run 189 stress 0.0001608119
## ... Procrustes: rmse 0.01823262 max resid 0.03407676
## Run 190 stress 9.814449e-05
## ... Procrustes: rmse 0.008503691 max resid 0.02240245
## Run 191 stress 0.002338122
## Run 192 stress 9.245367e-05
## ... Procrustes: rmse 0.01219029 max resid 0.01989605
## Run 193 stress 0.1773328
## Run 194 stress 0.0001042936
## ... Procrustes: rmse 0.021133 max resid 0.03895529
## Run 195 stress 0.002338129
## Run 196 stress 0.34037
## Run 197 stress 9.744161e-05
## ... Procrustes: rmse 0.02366545 max resid 0.03847714
## Run 198 stress 0.0001058547
## ... Procrustes: rmse 0.021092 max resid 0.03896602
## Run 199 stress 0.002338118
## Run 200 stress 0.002338118
## Run 201 stress 9.588187e-05
## ... Procrustes: rmse 0.01018809 max resid 0.01715293
## Run 202 stress 9.614519e-05
## ... Procrustes: rmse 0.01063674 max resid 0.02784709
## Run 203 stress 9.215562e-05
## ... Procrustes: rmse 0.01077206 max resid 0.02922607
## Run 204 stress 0.002338104
## Run 205 stress 0.2368142
## Run 206 stress 9.995419e-05
## ... Procrustes: rmse 0.02109259 max resid 0.03890339
## Run 207 stress 0.002338123
## Run 208 stress 9.946265e-05
## ... Procrustes: rmse 0.01480039 max resid 0.02565473
## Run 209 stress 8.762925e-05
## ... Procrustes: rmse 0.006490792 max resid 0.0161841
## Run 210 stress 0.2438929
## Run 211 stress 9.935799e-05
## ... Procrustes: rmse 0.02242946 max resid 0.03489752
## Run 212 stress 9.662137e-05
## ... Procrustes: rmse 0.02160441 max resid 0.03283106
## Run 213 stress 0.3403702
## Run 214 stress 9.192168e-05
## ... Procrustes: rmse 0.01023436 max resid 0.02491924
## Run 215 stress 9.621369e-05
## ... Procrustes: rmse 0.003531835 max resid 0.005938146
## ... Similar to previous best
## Run 216 stress 0.002338114
## Run 217 stress 9.409349e-05
## ... Procrustes: rmse 0.0105284 max resid 0.02694689
## Run 218 stress 0.00233812
## Run 219 stress 0.002338115
## Run 220 stress 0.3275199
## Run 221 stress 0.0001698885
## ... Procrustes: rmse 0.01797402 max resid 0.03356746
## Run 222 stress 9.102131e-05
## ... Procrustes: rmse 0.0109555 max resid 0.01644603
## Run 223 stress 0.002338094
## Run 224 stress 9.59268e-05
## ... Procrustes: rmse 0.006920472 max resid 0.01390379
## Run 225 stress 8.632931e-05
## ... Procrustes: rmse 0.01054738 max resid 0.02846295
## Run 226 stress 0.0001070685
## ... Procrustes: rmse 0.02110075 max resid 0.03897101
## Run 227 stress 9.486762e-05
## ... Procrustes: rmse 0.003085167 max resid 0.004841247
## ... Similar to previous best
## Run 228 stress 0.0001122141
## ... Procrustes: rmse 0.0211407 max resid 0.03904213
## Run 229 stress 9.682389e-05
## ... Procrustes: rmse 0.00556339 max resid 0.01086029
## Run 230 stress 0.0001234378
## ... Procrustes: rmse 0.02005862 max resid 0.03731375
## Run 231 stress 9.330084e-05
## ... Procrustes: rmse 0.01031897 max resid 0.02153476
## Run 232 stress 0.002338111
## Run 233 stress 0.0001155597
## ... Procrustes: rmse 0.02069444 max resid 0.03833632
## Run 234 stress 9.658973e-05
## ... Procrustes: rmse 0.01676762 max resid 0.03268352
## Run 235 stress 0.002338109
## Run 236 stress 9.647932e-05
## ... Procrustes: rmse 0.01088865 max resid 0.02947422
## Run 237 stress 0.1773328
## Run 238 stress 9.573239e-05
## ... Procrustes: rmse 0.01124353 max resid 0.03095101
## Run 239 stress 0.1773328
## Run 240 stress 0.002338116
## Run 241 stress 0.002338114
## Run 242 stress 0.002338115
## Run 243 stress 0.0001004752
## ... Procrustes: rmse 0.0211484 max resid 0.03897089
## Run 244 stress 9.989306e-05
## ... Procrustes: rmse 0.02129982 max resid 0.03924075
## Run 245 stress 9.058094e-05
## ... Procrustes: rmse 0.009836146 max resid 0.02420498
## Run 246 stress 0.000130635
## ... Procrustes: rmse 0.01177508 max resid 0.02296562
## Run 247 stress 8.847656e-05
## ... Procrustes: rmse 0.006507316 max resid 0.01642607
## Run 248 stress 9.435423e-05
## ... Procrustes: rmse 0.01094617 max resid 0.02985583
## Run 249 stress 0.0001409738
## ... Procrustes: rmse 0.01137317 max resid 0.0170026
## Run 250 stress 0.002338113
## Run 251 stress 0.002338119
## Run 252 stress 0.002338112
## Run 253 stress 9.341773e-05
## ... Procrustes: rmse 0.008380682 max resid 0.02208891
## Run 254 stress 9.979683e-05
## ... Procrustes: rmse 0.02115872 max resid 0.03904246
## Run 255 stress 0.002338103
## Run 256 stress 0.0001059123
## ... Procrustes: rmse 0.0211741 max resid 0.0390841
## Run 257 stress 0.002338105
## Run 258 stress 0.0001794589
## ... Procrustes: rmse 0.01688912 max resid 0.03139746
## Run 259 stress 0.002338115
## Run 260 stress 0.0001524751
## ... Procrustes: rmse 0.01739788 max resid 0.03339832
## Run 261 stress 9.780353e-05
## ... Procrustes: rmse 0.02635019 max resid 0.04455315
## Run 262 stress 0.002338106
## Run 263 stress 0.002338117
## Run 264 stress 9.936861e-05
## ... Procrustes: rmse 0.01233697 max resid 0.0180398
## Run 265 stress 9.997828e-05
## ... Procrustes: rmse 0.02151732 max resid 0.03963541
## Run 266 stress 0.002338113
## Run 267 stress 9.963698e-05
## ... Procrustes: rmse 0.02105549 max resid 0.03888209
## Run 268 stress 0.0001011569
## ... Procrustes: rmse 0.02083224 max resid 0.03856433
## Run 269 stress 0.002338119
## Run 270 stress 0.002338095
## Run 271 stress 0.002338105
## Run 272 stress 9.560704e-05
## ... Procrustes: rmse 0.0106645 max resid 0.02727198
## Run 273 stress 9.957897e-05
## ... Procrustes: rmse 0.02410386 max resid 0.04376525
## Run 274 stress 9.484857e-05
## ... Procrustes: rmse 0.01917114 max resid 0.02792823
## Run 275 stress 0.0001665603
## ... Procrustes: rmse 0.01775621 max resid 0.0331441
## Run 276 stress 0.002338114
## Run 277 stress 9.241508e-05
## ... Procrustes: rmse 0.01112307 max resid 0.02800626
## Run 278 stress 0.0001071981
## ... Procrustes: rmse 0.0208356 max resid 0.03852103
## Run 279 stress 0.002338117
## Run 280 stress 0.0001488205
## ... Procrustes: rmse 0.01832352 max resid 0.03530309
## Run 281 stress 0.002338116
## Run 282 stress 0.002338129
## Run 283 stress 0.002338108
## Run 284 stress 0.002338113
## Run 285 stress 0.2447261
## Run 286 stress 0.1773328
## Run 287 stress 0.002338122
## Run 288 stress 0.0001027602
## ... Procrustes: rmse 0.02108635 max resid 0.03892354
## Run 289 stress 0.002338122
## Run 290 stress 9.951476e-05
## ... Procrustes: rmse 0.01143555 max resid 0.01951556
## Run 291 stress 9.984221e-05
## ... Procrustes: rmse 0.02283298 max resid 0.04124004
## Run 292 stress 9.566409e-05
## ... Procrustes: rmse 0.01062251 max resid 0.02326777
## Run 293 stress 0.0023381
## Run 294 stress 9.994678e-05
## ... Procrustes: rmse 0.01053605 max resid 0.02675003
## Run 295 stress 0.002338121
## Run 296 stress 9.947056e-05
## ... Procrustes: rmse 0.02232291 max resid 0.03464609
## Run 297 stress 8.987346e-05
## ... Procrustes: rmse 0.01059028 max resid 0.02721679
## Run 298 stress 9.99691e-05
## ... Procrustes: rmse 0.02116141 max resid 0.03902401
## Run 299 stress 0.00233812
## Run 300 stress 9.452449e-05
## ... Procrustes: rmse 0.008845964 max resid 0.02243648
## Run 301 stress 0.0001005286
## ... Procrustes: rmse 0.02112413 max resid 0.03901584
## Run 302 stress 0.002338113
## Run 303 stress 8.731821e-05
## ... Procrustes: rmse 0.00196852 max resid 0.004859445
## ... Similar to previous best
## Run 304 stress 9.912861e-05
## ... Procrustes: rmse 0.02191532 max resid 0.03362149
## Run 305 stress 0.002338122
## Run 306 stress 0.002338112
## Run 307 stress 0.1773328
## Run 308 stress 9.768501e-05
## ... Procrustes: rmse 0.0107889 max resid 0.0292286
## Run 309 stress 0.002338098
## Run 310 stress 0.002338114
## Run 311 stress 9.968975e-05
## ... Procrustes: rmse 0.009536654 max resid 0.02280973
## Run 312 stress 9.998294e-05
## ... Procrustes: rmse 0.01538136 max resid 0.0234475
## Run 313 stress 9.983064e-05
## ... Procrustes: rmse 0.02171542 max resid 0.03994096
## Run 314 stress 9.8121e-05
## ... Procrustes: rmse 0.006553391 max resid 0.01254021
## Run 315 stress 0.0001003525
## ... Procrustes: rmse 0.02114245 max resid 0.03899165
## Run 316 stress 0.002338123
## Run 317 stress 9.990698e-05
## ... Procrustes: rmse 0.01415633 max resid 0.02204767
## Run 318 stress 0.002338111
## Run 319 stress 0.00233813
## Run 320 stress 0.002338122
## Run 321 stress 0.002338117
## Run 322 stress 0.002338123
## Run 323 stress 0.2982844
## Run 324 stress 0.002338117
## Run 325 stress 9.410152e-05
## ... Procrustes: rmse 0.01179763 max resid 0.03250593
## Run 326 stress 9.545537e-05
## ... Procrustes: rmse 0.02433158 max resid 0.04418781
## Run 327 stress 0.002338115
## Run 328 stress 0.002338117
## Run 329 stress 9.986495e-05
## ... Procrustes: rmse 0.01926315 max resid 0.0273837
## Run 330 stress 0.253916
## Run 331 stress 0.002338119
## Run 332 stress 0.000100691
## ... Procrustes: rmse 0.02119664 max resid 0.039105
## Run 333 stress 0.1773328
## Run 334 stress 0.002338103
## Run 335 stress 9.919127e-05
## ... Procrustes: rmse 0.01046122 max resid 0.02171447
## Run 336 stress 0.0001036205
## ... Procrustes: rmse 0.02112438 max resid 0.0389851
## Run 337 stress 9.831859e-05
## ... Procrustes: rmse 0.01067753 max resid 0.02881481
## Run 338 stress 9.748678e-05
## ... Procrustes: rmse 0.007188887 max resid 0.01866202
## Run 339 stress 0.002338112
## Run 340 stress 9.976021e-05
## ... Procrustes: rmse 0.01410387 max resid 0.0218492
## Run 341 stress 9.898045e-05
## ... Procrustes: rmse 0.01081831 max resid 0.02939528
## Run 342 stress 0.000151962
## ... Procrustes: rmse 0.01445689 max resid 0.02389265
## Run 343 stress 0.002338114
## Run 344 stress 0.002338108
## Run 345 stress 9.852214e-05
## ... Procrustes: rmse 0.02238979 max resid 0.03481907
## Run 346 stress 0.0001743045
## ... Procrustes: rmse 0.01638483 max resid 0.03052521
## Run 347 stress 0.00233812
## Run 348 stress 0.002338122
## Run 349 stress 9.522625e-05
## ... Procrustes: rmse 0.002887581 max resid 0.003796033
## ... Similar to previous best
## Run 350 stress 9.885792e-05
## ... Procrustes: rmse 0.006812221 max resid 0.01774555
## Run 351 stress 9.278037e-05
## ... Procrustes: rmse 0.009909516 max resid 0.02485188
## Run 352 stress 9.738766e-05
## ... Procrustes: rmse 0.01063412 max resid 0.027377
## Run 353 stress 0.2360866
## Run 354 stress 0.002338121
## Run 355 stress 9.636343e-05
## ... Procrustes: rmse 0.01036068 max resid 0.02707203
## Run 356 stress 0.000176242
## ... Procrustes: rmse 0.0177934 max resid 0.03323325
## Run 357 stress 0.002338106
## Run 358 stress 0.002338105
## Run 359 stress 0.002338116
## Run 360 stress 9.294198e-05
## ... Procrustes: rmse 0.008724004 max resid 0.02420189
## Run 361 stress 9.958897e-05
## ... Procrustes: rmse 0.01344429 max resid 0.02233939
## Run 362 stress 9.95307e-05
## ... Procrustes: rmse 0.01087125 max resid 0.02958028
## Run 363 stress 9.68799e-05
## ... Procrustes: rmse 0.02325866 max resid 0.03673931
## Run 364 stress 0.002338117
## Run 365 stress 9.62324e-05
## ... Procrustes: rmse 0.00210995 max resid 0.003886881
## ... Similar to previous best
## Run 366 stress 0.1773328
## Run 367 stress 0.002338111
## Run 368 stress 0.0001778839
## ... Procrustes: rmse 0.01715623 max resid 0.03177595
## Run 369 stress 9.684639e-05
## ... Procrustes: rmse 0.01175825 max resid 0.03248972
## Run 370 stress 0.002338122
## Run 371 stress 0.002338116
## Run 372 stress 0.1773328
## Run 373 stress 9.991451e-05
## ... Procrustes: rmse 0.02115413 max resid 0.03900317
## Run 374 stress 0.000107002
## ... Procrustes: rmse 0.02111394 max resid 0.03901717
## Run 375 stress 0.1773328
## Run 376 stress 0.0001374224
## ... Procrustes: rmse 0.01519489 max resid 0.02829938
## Run 377 stress 8.249009e-05
## ... Procrustes: rmse 0.01065372 max resid 0.02876869
## Run 378 stress 0.002338104
## Run 379 stress 9.117848e-05
## ... Procrustes: rmse 0.004293614 max resid 0.01141633
## Run 380 stress 9.802265e-05
## ... Procrustes: rmse 0.01045768 max resid 0.0281966
## Run 381 stress 0.1773328
## Run 382 stress 0.002338121
## Run 383 stress 9.794588e-05
## ... Procrustes: rmse 0.01118654 max resid 0.03068895
## Run 384 stress 0.002338117
## Run 385 stress 9.609959e-05
## ... Procrustes: rmse 0.01076475 max resid 0.02945701
## Run 386 stress 0.2787143
## Run 387 stress 9.609102e-05
## ... Procrustes: rmse 0.0112703 max resid 0.02729118
## Run 388 stress 0.002338123
## Run 389 stress 0.002338104
## Run 390 stress 0.2058255
## Run 391 stress 0.0001035151
## ... Procrustes: rmse 0.02117209 max resid 0.03906601
## Run 392 stress 0.002338116
## Run 393 stress 0.002338122
## Run 394 stress 0.0001116052
## ... Procrustes: rmse 0.01697609 max resid 0.02730443
## Run 395 stress 0.002338122
## Run 396 stress 0.002338122
## Run 397 stress 0.0001375098
## ... Procrustes: rmse 0.01623468 max resid 0.03384282
## Run 398 stress 9.436803e-05
## ... Procrustes: rmse 0.009612769 max resid 0.0202616
## Run 399 stress 9.99425e-05
## ... Procrustes: rmse 0.02133451 max resid 0.03614669
## Run 400 stress 0.0001058046
## ... Procrustes: rmse 0.02113662 max resid 0.03900537
## Run 401 stress 0.1773328
## Run 402 stress 0.002338115
## Run 403 stress 9.786717e-05
## ... Procrustes: rmse 0.02639345 max resid 0.04498128
## Run 404 stress 0.0001002935
## ... Procrustes: rmse 0.02120422 max resid 0.03908557
## Run 405 stress 9.630921e-05
## ... Procrustes: rmse 0.007618462 max resid 0.01882647
## Run 406 stress 0.002338118
## Run 407 stress 7.886156e-05
## ... Procrustes: rmse 0.003006332 max resid 0.006909696
## ... Similar to previous best
## Run 408 stress 0.0001115282
## ... Procrustes: rmse 0.02114997 max resid 0.03911611
## Run 409 stress 0.002338113
## Run 410 stress 0.002338113
## Run 411 stress 8.987223e-05
## ... Procrustes: rmse 0.005600371 max resid 0.008982186
## Run 412 stress 0.002338124
## Run 413 stress 0.0001175368
## ... Procrustes: rmse 0.01804039 max resid 0.02938282
## Run 414 stress 9.964345e-05
## ... Procrustes: rmse 0.0111608 max resid 0.01665359
## Run 415 stress 0.002338121
## Run 416 stress 9.737478e-05
## ... Procrustes: rmse 0.01076137 max resid 0.02916102
## Run 417 stress 0.2538984
## Run 418 stress 9.876531e-05
## ... Procrustes: rmse 0.01144583 max resid 0.03155811
## Run 419 stress 0.002338103
## Run 420 stress 9.960556e-05
## ... Procrustes: rmse 0.02317502 max resid 0.03651845
## Run 421 stress 0.002338123
## Run 422 stress 0.0001049921
## ... Procrustes: rmse 0.02112886 max resid 0.03900741
## Run 423 stress 0.0001709442
## ... Procrustes: rmse 0.01774279 max resid 0.03312231
## Run 424 stress 9.864772e-05
## ... Procrustes: rmse 0.02077813 max resid 0.03028218
## Run 425 stress 0.0001635476
## ... Procrustes: rmse 0.01512339 max resid 0.0219317
## Run 426 stress 0.002338118
## Run 427 stress 0.002338116
## Run 428 stress 0.002338117
## Run 429 stress 9.136984e-05
## ... Procrustes: rmse 0.01074001 max resid 0.02901492
## Run 430 stress 9.857266e-05
## ... Procrustes: rmse 0.01081457 max resid 0.02917904
## Run 431 stress 0.3266727
## Run 432 stress 0.002338112
## Run 433 stress 7.311494e-05
## ... New best solution
## ... Procrustes: rmse 0.006612863 max resid 0.01742666
## Run 434 stress 0.1773328
## Run 435 stress 0.002338119
## Run 436 stress 0.0001064995
## ... Procrustes: rmse 0.0159535 max resid 0.0295825
## Run 437 stress 9.996728e-05
## ... Procrustes: rmse 0.01615375 max resid 0.03013765
## Run 438 stress 0.002338111
## Run 439 stress 0.000155277
## ... Procrustes: rmse 0.01347453 max resid 0.02271081
## Run 440 stress 9.952671e-05
## ... Procrustes: rmse 0.01615542 max resid 0.03014173
## Run 441 stress 0.002338119
## Run 442 stress 9.991683e-05
## ... Procrustes: rmse 0.004626312 max resid 0.007583695
## ... Similar to previous best
## Run 443 stress 0.002338118
## Run 444 stress 0.00233811
## Run 445 stress 9.140411e-05
## ... Procrustes: rmse 0.0168358 max resid 0.04552819
## Run 446 stress 0.002338117
## Run 447 stress 9.634499e-05
## ... Procrustes: rmse 0.007487239 max resid 0.01895404
## Run 448 stress 0.0001004477
## ... Procrustes: rmse 0.01347273 max resid 0.02358164
## Run 449 stress 0.002338117
## Run 450 stress 0.002338121
## Run 451 stress 0.002338123
## Run 452 stress 9.973487e-05
## ... Procrustes: rmse 0.01648987 max resid 0.03091566
## Run 453 stress 9.893621e-05
## ... Procrustes: rmse 0.02142265 max resid 0.03296802
## Run 454 stress 9.813004e-05
## ... Procrustes: rmse 0.01577603 max resid 0.02369426
## Run 455 stress 9.025987e-05
## ... Procrustes: rmse 0.0140973 max resid 0.03676358
## Run 456 stress 0.00233811
## Run 457 stress 0.0001055586
## ... Procrustes: rmse 0.01612383 max resid 0.02998564
## Run 458 stress 9.523066e-05
## ... Procrustes: rmse 0.01327597 max resid 0.03518665
## Run 459 stress 9.990234e-05
## ... Procrustes: rmse 0.01615087 max resid 0.03011355
## Run 460 stress 0.002338121
## Run 461 stress 0.002338111
## Run 462 stress 0.002338106
## Run 463 stress 0.002338116
## Run 464 stress 0.002338114
## Run 465 stress 9.989326e-05
## ... Procrustes: rmse 0.01408172 max resid 0.02374257
## Run 466 stress 9.837285e-05
## ... Procrustes: rmse 0.0169958 max resid 0.04593227
## Run 467 stress 0.002338119
## Run 468 stress 0.0001182721
## ... Procrustes: rmse 0.01546825 max resid 0.02827837
## Run 469 stress 0.002338107
## Run 470 stress 0.002338113
## Run 471 stress 9.170577e-05
## ... Procrustes: rmse 0.01716116 max resid 0.04654173
## Run 472 stress 9.96087e-05
## ... Procrustes: rmse 0.01607794 max resid 0.0299574
## Run 473 stress 9.986214e-05
## ... Procrustes: rmse 0.01364376 max resid 0.01926442
## Run 474 stress 0.0001762009
## ... Procrustes: rmse 0.01267389 max resid 0.02022236
## Run 475 stress 0.002338116
## Run 476 stress 9.982273e-05
## ... Procrustes: rmse 0.01705033 max resid 0.04617528
## Run 477 stress 9.914406e-05
## ... Procrustes: rmse 0.009144152 max resid 0.0222917
## Run 478 stress 9.965069e-05
## ... Procrustes: rmse 0.01320934 max resid 0.01920456
## Run 479 stress 9.785284e-05
## ... Procrustes: rmse 0.01340654 max resid 0.03593189
## Run 480 stress 0.0001737786
## ... Procrustes: rmse 0.01363395 max resid 0.0227839
## Run 481 stress 0.002338122
## Run 482 stress 0.2367628
## Run 483 stress 0.002338127
## Run 484 stress 0.002338116
## Run 485 stress 9.992138e-05
## ... Procrustes: rmse 0.01713724 max resid 0.04644291
## Run 486 stress 0.002338109
## Run 487 stress 0.0001030629
## ... Procrustes: rmse 0.01315672 max resid 0.0218449
## Run 488 stress 9.821304e-05
## ... Procrustes: rmse 0.01715695 max resid 0.04647207
## Run 489 stress 9.733651e-05
## ... Procrustes: rmse 0.01324379 max resid 0.03714243
## Run 490 stress 9.547918e-05
## ... Procrustes: rmse 0.01723081 max resid 0.04681024
## Run 491 stress 0.0001065198
## ... Procrustes: rmse 0.01348346 max resid 0.02450384
## Run 492 stress 0.002338113
## Run 493 stress 9.366377e-05
## ... Procrustes: rmse 0.01724064 max resid 0.04630822
## Run 494 stress 0.002338121
## Run 495 stress 9.757411e-05
## ... Procrustes: rmse 0.0189495 max resid 0.02634305
## Run 496 stress 0.2559268
## Run 497 stress 0.002338119
## Run 498 stress 9.968193e-05
## ... Procrustes: rmse 0.01657552 max resid 0.0310892
## Run 499 stress 0.0001167562
## ... Procrustes: rmse 0.01535597 max resid 0.02804786
## Run 500 stress 0.1773328
## *** Best solution repeated 1 times## Warning in metaMDS(enveom_dist, try = 1000, parallel = 4, previous.best, :
## stress is (nearly) zero: you may have insufficient data# Stratified lakes and ocean sites
enveso_NMDS <- metaMDS(enveso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.02169059
## Run 1 stress 0.06608976
## Run 2 stress 0.02169059
## ... New best solution
## ... Procrustes: rmse 1.304675e-05 max resid 3.448037e-05
## ... Similar to previous best
## Run 3 stress 0.06608976
## Run 4 stress 0.02169059
## ... Procrustes: rmse 1.006751e-05 max resid 2.730254e-05
## ... Similar to previous best
## Run 5 stress 0.02169059
## ... New best solution
## ... Procrustes: rmse 2.352025e-06 max resid 4.030026e-06
## ... Similar to previous best
## Run 6 stress 0.1244007
## Run 7 stress 0.02169059
## ... Procrustes: rmse 6.819927e-06 max resid 1.711835e-05
## ... Similar to previous best
## Run 8 stress 0.02169059
## ... Procrustes: rmse 1.304913e-05 max resid 2.913728e-05
## ... Similar to previous best
## Run 9 stress 0.02169059
## ... Procrustes: rmse 6.671688e-06 max resid 1.692243e-05
## ... Similar to previous best
## Run 10 stress 0.02169059
## ... Procrustes: rmse 1.838201e-05 max resid 4.946394e-05
## ... Similar to previous best
## Run 11 stress 0.06608976
## Run 12 stress 0.02169059
## ... Procrustes: rmse 2.803597e-06 max resid 5.646574e-06
## ... Similar to previous best
## Run 13 stress 0.06608976
## Run 14 stress 0.02169059
## ... Procrustes: rmse 1.711876e-05 max resid 4.201689e-05
## ... Similar to previous best
## Run 15 stress 0.02169059
## ... Procrustes: rmse 4.08139e-06 max resid 9.302233e-06
## ... Similar to previous best
## Run 16 stress 0.02169059
## ... Procrustes: rmse 9.249879e-06 max resid 2.338774e-05
## ... Similar to previous best
## Run 17 stress 0.0216906
## ... Procrustes: rmse 2.806213e-05 max resid 7.224447e-05
## ... Similar to previous best
## Run 18 stress 0.02169059
## ... Procrustes: rmse 7.729109e-06 max resid 1.588099e-05
## ... Similar to previous best
## Run 19 stress 0.02169059
## ... Procrustes: rmse 1.358998e-05 max resid 3.258584e-05
## ... Similar to previous best
## Run 20 stress 0.02169059
## ... Procrustes: rmse 2.651739e-05 max resid 6.787979e-05
## ... Similar to previous best
## Run 21 stress 0.02169059
## ... Procrustes: rmse 5.317967e-06 max resid 1.340579e-05
## ... Similar to previous best
## Run 22 stress 0.02169059
## ... Procrustes: rmse 1.716848e-05 max resid 4.333551e-05
## ... Similar to previous best
## Run 23 stress 0.02169059
## ... Procrustes: rmse 1.08404e-05 max resid 2.781119e-05
## ... Similar to previous best
## Run 24 stress 0.02169059
## ... Procrustes: rmse 6.481871e-06 max resid 1.188277e-05
## ... Similar to previous best
## Run 25 stress 0.02169059
## ... Procrustes: rmse 1.218743e-05 max resid 3.088381e-05
## ... Similar to previous best
## Run 26 stress 0.02169059
## ... Procrustes: rmse 1.294467e-05 max resid 3.41397e-05
## ... Similar to previous best
## Run 27 stress 0.02169059
## ... Procrustes: rmse 6.196377e-06 max resid 1.41163e-05
## ... Similar to previous best
## Run 28 stress 0.06608976
## Run 29 stress 0.3154694
## Run 30 stress 0.02169059
## ... Procrustes: rmse 5.126053e-06 max resid 1.089719e-05
## ... Similar to previous best
## Run 31 stress 0.06608976
## Run 32 stress 0.02169059
## ... Procrustes: rmse 1.841401e-05 max resid 4.659743e-05
## ... Similar to previous best
## Run 33 stress 0.02169059
## ... Procrustes: rmse 3.745038e-06 max resid 8.304667e-06
## ... Similar to previous best
## Run 34 stress 0.02169059
## ... Procrustes: rmse 9.457847e-06 max resid 2.383298e-05
## ... Similar to previous best
## Run 35 stress 0.02169059
## ... Procrustes: rmse 6.082616e-06 max resid 1.574563e-05
## ... Similar to previous best
## Run 36 stress 0.02169059
## ... Procrustes: rmse 5.726175e-06 max resid 1.533851e-05
## ... Similar to previous best
## Run 37 stress 0.02169059
## ... Procrustes: rmse 4.080997e-06 max resid 7.529233e-06
## ... Similar to previous best
## Run 38 stress 0.02169059
## ... Procrustes: rmse 6.214798e-06 max resid 1.55284e-05
## ... Similar to previous best
## Run 39 stress 0.02169059
## ... New best solution
## ... Procrustes: rmse 3.086169e-06 max resid 6.094489e-06
## ... Similar to previous best
## Run 40 stress 0.02169059
## ... Procrustes: rmse 9.6961e-06 max resid 2.231415e-05
## ... Similar to previous best
## Run 41 stress 0.02169059
## ... Procrustes: rmse 1.660102e-05 max resid 4.285888e-05
## ... Similar to previous best
## Run 42 stress 0.02169059
## ... Procrustes: rmse 2.676736e-06 max resid 4.897693e-06
## ... Similar to previous best
## Run 43 stress 0.0216906
## ... Procrustes: rmse 2.917205e-05 max resid 7.61478e-05
## ... Similar to previous best
## Run 44 stress 0.02169059
## ... New best solution
## ... Procrustes: rmse 3.293337e-06 max resid 8.153761e-06
## ... Similar to previous best
## Run 45 stress 0.02169059
## ... Procrustes: rmse 1.506076e-06 max resid 3.631667e-06
## ... Similar to previous best
## Run 46 stress 0.02169059
## ... Procrustes: rmse 1.326352e-05 max resid 3.292009e-05
## ... Similar to previous best
## Run 47 stress 0.0216906
## ... Procrustes: rmse 6.782432e-06 max resid 9.732877e-06
## ... Similar to previous best
## Run 48 stress 0.02169059
## ... Procrustes: rmse 6.173601e-06 max resid 1.568101e-05
## ... Similar to previous best
## Run 49 stress 0.06608976
## Run 50 stress 0.02169059
## ... Procrustes: rmse 9.997266e-06 max resid 2.578346e-05
## ... Similar to previous best
## Run 51 stress 0.06608976
## Run 52 stress 0.1244548
## Run 53 stress 0.02169059
## ... Procrustes: rmse 1.390428e-05 max resid 3.550374e-05
## ... Similar to previous best
## Run 54 stress 0.02169059
## ... Procrustes: rmse 1.163064e-05 max resid 1.945916e-05
## ... Similar to previous best
## Run 55 stress 0.06608976
## Run 56 stress 0.0216906
## ... Procrustes: rmse 2.817678e-05 max resid 7.232646e-05
## ... Similar to previous best
## Run 57 stress 0.02169059
## ... Procrustes: rmse 1.61406e-06 max resid 3.312737e-06
## ... Similar to previous best
## Run 58 stress 0.06608976
## Run 59 stress 0.0216906
## ... Procrustes: rmse 8.439659e-06 max resid 1.81412e-05
## ... Similar to previous best
## Run 60 stress 0.02169059
## ... Procrustes: rmse 2.035247e-05 max resid 5.337019e-05
## ... Similar to previous best
## Run 61 stress 0.1003186
## Run 62 stress 0.02169059
## ... Procrustes: rmse 8.017426e-06 max resid 1.995587e-05
## ... Similar to previous best
## Run 63 stress 0.02169059
## ... Procrustes: rmse 8.289434e-06 max resid 2.121259e-05
## ... Similar to previous best
## Run 64 stress 0.02169059
## ... Procrustes: rmse 1.122139e-05 max resid 2.907632e-05
## ... Similar to previous best
## Run 65 stress 0.06608976
## Run 66 stress 0.02169059
## ... Procrustes: rmse 4.481742e-06 max resid 1.077124e-05
## ... Similar to previous best
## Run 67 stress 0.1199826
## Run 68 stress 0.02169059
## ... Procrustes: rmse 4.835816e-06 max resid 1.237409e-05
## ... Similar to previous best
## Run 69 stress 0.2843498
## Run 70 stress 0.02169059
## ... Procrustes: rmse 1.403536e-05 max resid 3.671319e-05
## ... Similar to previous best
## Run 71 stress 0.06608976
## Run 72 stress 0.0216906
## ... Procrustes: rmse 2.55948e-05 max resid 6.468461e-05
## ... Similar to previous best
## Run 73 stress 0.06608976
## Run 74 stress 0.02169059
## ... Procrustes: rmse 1.007575e-06 max resid 2.517298e-06
## ... Similar to previous best
## Run 75 stress 0.06608976
## Run 76 stress 0.02169059
## ... Procrustes: rmse 1.211393e-05 max resid 3.06989e-05
## ... Similar to previous best
## Run 77 stress 0.06608976
## Run 78 stress 0.02169059
## ... Procrustes: rmse 6.154924e-06 max resid 1.673471e-05
## ... Similar to previous best
## Run 79 stress 0.02169059
## ... Procrustes: rmse 2.471584e-05 max resid 6.152384e-05
## ... Similar to previous best
## Run 80 stress 0.1208472
## Run 81 stress 0.02169059
## ... Procrustes: rmse 5.90686e-06 max resid 1.231074e-05
## ... Similar to previous best
## Run 82 stress 0.02169059
## ... Procrustes: rmse 7.632536e-06 max resid 1.869029e-05
## ... Similar to previous best
## Run 83 stress 0.02169059
## ... Procrustes: rmse 1.38965e-05 max resid 3.500443e-05
## ... Similar to previous best
## Run 84 stress 0.06608976
## Run 85 stress 0.06608976
## Run 86 stress 0.0216906
## ... Procrustes: rmse 2.967367e-05 max resid 7.632436e-05
## ... Similar to previous best
## Run 87 stress 0.2996193
## Run 88 stress 0.02169059
## ... Procrustes: rmse 7.103991e-06 max resid 1.815508e-05
## ... Similar to previous best
## Run 89 stress 0.02169059
## ... Procrustes: rmse 1.008747e-05 max resid 2.460088e-05
## ... Similar to previous best
## Run 90 stress 0.02169059
## ... Procrustes: rmse 1.136441e-05 max resid 2.892512e-05
## ... Similar to previous best
## Run 91 stress 0.02169059
## ... Procrustes: rmse 3.804877e-06 max resid 8.383254e-06
## ... Similar to previous best
## Run 92 stress 0.02169059
## ... Procrustes: rmse 9.269118e-06 max resid 2.314402e-05
## ... Similar to previous best
## Run 93 stress 0.06608976
## Run 94 stress 0.02169059
## ... Procrustes: rmse 2.275052e-06 max resid 5.259898e-06
## ... Similar to previous best
## Run 95 stress 0.02169059
## ... Procrustes: rmse 2.334425e-05 max resid 5.942988e-05
## ... Similar to previous best
## Run 96 stress 0.06608976
## Run 97 stress 0.02169059
## ... Procrustes: rmse 8.254079e-06 max resid 2.098679e-05
## ... Similar to previous best
## Run 98 stress 0.02169059
## ... Procrustes: rmse 9.460313e-06 max resid 1.997969e-05
## ... Similar to previous best
## Run 99 stress 0.1221379
## Run 100 stress 0.02169059
## ... Procrustes: rmse 1.618561e-05 max resid 4.115698e-05
## ... Similar to previous best
## Run 101 stress 0.02169059
## ... Procrustes: rmse 4.96262e-06 max resid 1.260343e-05
## ... Similar to previous best
## Run 102 stress 0.02169059
## ... Procrustes: rmse 1.422959e-05 max resid 3.525683e-05
## ... Similar to previous best
## Run 103 stress 0.06608976
## Run 104 stress 0.02169059
## ... Procrustes: rmse 1.454656e-05 max resid 3.670735e-05
## ... Similar to previous best
## Run 105 stress 0.1255191
## Run 106 stress 0.02169059
## ... Procrustes: rmse 1.538523e-05 max resid 3.913619e-05
## ... Similar to previous best
## Run 107 stress 0.02169059
## ... Procrustes: rmse 6.462003e-06 max resid 1.378828e-05
## ... Similar to previous best
## Run 108 stress 0.02169059
## ... Procrustes: rmse 1.840494e-05 max resid 4.646101e-05
## ... Similar to previous best
## Run 109 stress 0.02169059
## ... Procrustes: rmse 4.192456e-06 max resid 1.093425e-05
## ... Similar to previous best
## Run 110 stress 0.02169059
## ... Procrustes: rmse 4.819299e-06 max resid 1.29863e-05
## ... Similar to previous best
## Run 111 stress 0.06608976
## Run 112 stress 0.02169059
## ... Procrustes: rmse 6.365527e-06 max resid 1.515022e-05
## ... Similar to previous best
## Run 113 stress 0.02169059
## ... Procrustes: rmse 7.13615e-06 max resid 1.850534e-05
## ... Similar to previous best
## Run 114 stress 0.1208471
## Run 115 stress 0.02169059
## ... Procrustes: rmse 6.960095e-06 max resid 1.262964e-05
## ... Similar to previous best
## Run 116 stress 0.02169059
## ... Procrustes: rmse 6.198007e-06 max resid 1.628902e-05
## ... Similar to previous best
## Run 117 stress 0.06608976
## Run 118 stress 0.0216906
## ... Procrustes: rmse 2.953249e-05 max resid 7.342582e-05
## ... Similar to previous best
## Run 119 stress 0.02169059
## ... Procrustes: rmse 1.450745e-05 max resid 3.759288e-05
## ... Similar to previous best
## Run 120 stress 0.06608976
## Run 121 stress 0.02169059
## ... Procrustes: rmse 5.242716e-06 max resid 1.355054e-05
## ... Similar to previous best
## Run 122 stress 0.06608976
## Run 123 stress 0.02169059
## ... Procrustes: rmse 1.699558e-06 max resid 3.414505e-06
## ... Similar to previous best
## Run 124 stress 0.02169059
## ... Procrustes: rmse 9.179017e-06 max resid 2.372854e-05
## ... Similar to previous best
## Run 125 stress 0.02169059
## ... Procrustes: rmse 2.280117e-06 max resid 6.040051e-06
## ... Similar to previous best
## Run 126 stress 0.02169059
## ... Procrustes: rmse 8.723027e-06 max resid 2.230889e-05
## ... Similar to previous best
## Run 127 stress 0.1199826
## Run 128 stress 0.2986719
## Run 129 stress 0.02169059
## ... Procrustes: rmse 3.378366e-06 max resid 6.968546e-06
## ... Similar to previous best
## Run 130 stress 0.02169059
## ... Procrustes: rmse 1.484062e-05 max resid 3.695112e-05
## ... Similar to previous best
## Run 131 stress 0.1199826
## Run 132 stress 0.02169059
## ... Procrustes: rmse 1.59607e-05 max resid 4.093776e-05
## ... Similar to previous best
## Run 133 stress 0.06608976
## Run 134 stress 0.02169059
## ... New best solution
## ... Procrustes: rmse 1.890628e-06 max resid 4.671243e-06
## ... Similar to previous best
## Run 135 stress 0.02169059
## ... Procrustes: rmse 4.576695e-06 max resid 8.401289e-06
## ... Similar to previous best
## Run 136 stress 0.02169059
## ... Procrustes: rmse 2.11929e-05 max resid 5.381317e-05
## ... Similar to previous best
## Run 137 stress 0.02169059
## ... Procrustes: rmse 1.344026e-05 max resid 3.307178e-05
## ... Similar to previous best
## Run 138 stress 0.02169059
## ... Procrustes: rmse 4.084898e-06 max resid 1.059179e-05
## ... Similar to previous best
## Run 139 stress 0.02169059
## ... Procrustes: rmse 2.159405e-05 max resid 5.392279e-05
## ... Similar to previous best
## Run 140 stress 0.02169059
## ... Procrustes: rmse 4.169826e-06 max resid 1.113965e-05
## ... Similar to previous best
## Run 141 stress 0.02169059
## ... Procrustes: rmse 1.651972e-05 max resid 3.52909e-05
## ... Similar to previous best
## Run 142 stress 0.0216906
## ... Procrustes: rmse 3.421567e-05 max resid 8.836475e-05
## ... Similar to previous best
## Run 143 stress 0.02169059
## ... Procrustes: rmse 5.720855e-06 max resid 1.379585e-05
## ... Similar to previous best
## Run 144 stress 0.02169059
## ... Procrustes: rmse 3.45331e-06 max resid 9.40312e-06
## ... Similar to previous best
## Run 145 stress 0.06608976
## Run 146 stress 0.02169059
## ... Procrustes: rmse 5.817381e-06 max resid 1.429628e-05
## ... Similar to previous best
## Run 147 stress 0.02169059
## ... Procrustes: rmse 5.572145e-06 max resid 1.112975e-05
## ... Similar to previous best
## Run 148 stress 0.02169059
## ... Procrustes: rmse 1.488571e-06 max resid 3.75208e-06
## ... Similar to previous best
## Run 149 stress 0.1223427
## Run 150 stress 0.02169059
## ... Procrustes: rmse 1.647113e-06 max resid 3.127537e-06
## ... Similar to previous best
## Run 151 stress 0.02169059
## ... Procrustes: rmse 9.442028e-06 max resid 2.413995e-05
## ... Similar to previous best
## Run 152 stress 0.02169059
## ... Procrustes: rmse 1.149049e-05 max resid 2.955647e-05
## ... Similar to previous best
## Run 153 stress 0.1208472
## Run 154 stress 0.02169059
## ... Procrustes: rmse 2.910883e-06 max resid 5.707287e-06
## ... Similar to previous best
## Run 155 stress 0.02169059
## ... Procrustes: rmse 1.24915e-05 max resid 3.172823e-05
## ... Similar to previous best
## Run 156 stress 0.02169059
## ... Procrustes: rmse 7.167435e-06 max resid 1.684667e-05
## ... Similar to previous best
## Run 157 stress 0.02169059
## ... Procrustes: rmse 2.717364e-05 max resid 6.998615e-05
## ... Similar to previous best
## Run 158 stress 0.02169059
## ... Procrustes: rmse 2.698041e-05 max resid 7.018511e-05
## ... Similar to previous best
## Run 159 stress 0.02169059
## ... Procrustes: rmse 2.378748e-05 max resid 5.939268e-05
## ... Similar to previous best
## Run 160 stress 0.02169059
## ... Procrustes: rmse 9.59567e-06 max resid 2.412648e-05
## ... Similar to previous best
## Run 161 stress 0.02169059
## ... New best solution
## ... Procrustes: rmse 1.02398e-06 max resid 2.445186e-06
## ... Similar to previous best
## Run 162 stress 0.02169059
## ... Procrustes: rmse 4.213851e-06 max resid 9.500193e-06
## ... Similar to previous best
## Run 163 stress 0.02169059
## ... Procrustes: rmse 7.933719e-06 max resid 1.456051e-05
## ... Similar to previous best
## Run 164 stress 0.1208471
## Run 165 stress 0.06608976
## Run 166 stress 0.1221367
## Run 167 stress 0.02169059
## ... Procrustes: rmse 2.066325e-05 max resid 5.091091e-05
## ... Similar to previous best
## Run 168 stress 0.1221363
## Run 169 stress 0.02169059
## ... Procrustes: rmse 4.39562e-06 max resid 9.704509e-06
## ... Similar to previous best
## Run 170 stress 0.02169059
## ... Procrustes: rmse 8.797823e-06 max resid 2.310057e-05
## ... Similar to previous best
## Run 171 stress 0.02169059
## ... Procrustes: rmse 1.015676e-05 max resid 2.579982e-05
## ... Similar to previous best
## Run 172 stress 0.02169059
## ... Procrustes: rmse 1.759936e-05 max resid 4.489615e-05
## ... Similar to previous best
## Run 173 stress 0.02169059
## ... Procrustes: rmse 3.344292e-06 max resid 7.516269e-06
## ... Similar to previous best
## Run 174 stress 0.1199826
## Run 175 stress 0.02169059
## ... Procrustes: rmse 1.596295e-05 max resid 3.911485e-05
## ... Similar to previous best
## Run 176 stress 0.3154675
## Run 177 stress 0.02169059
## ... Procrustes: rmse 5.273471e-06 max resid 1.249135e-05
## ... Similar to previous best
## Run 178 stress 0.02169059
## ... Procrustes: rmse 2.58568e-06 max resid 4.313734e-06
## ... Similar to previous best
## Run 179 stress 0.06608976
## Run 180 stress 0.02169059
## ... Procrustes: rmse 4.867349e-06 max resid 1.205698e-05
## ... Similar to previous best
## Run 181 stress 0.02169059
## ... Procrustes: rmse 6.685986e-06 max resid 1.668e-05
## ... Similar to previous best
## Run 182 stress 0.02169059
## ... Procrustes: rmse 9.63199e-06 max resid 1.994415e-05
## ... Similar to previous best
## Run 183 stress 0.02169059
## ... Procrustes: rmse 1.097456e-06 max resid 2.306726e-06
## ... Similar to previous best
## Run 184 stress 0.06608977
## Run 185 stress 0.02169059
## ... Procrustes: rmse 1.430892e-05 max resid 3.5959e-05
## ... Similar to previous best
## Run 186 stress 0.06608976
## Run 187 stress 0.02169059
## ... Procrustes: rmse 3.777635e-06 max resid 7.503621e-06
## ... Similar to previous best
## Run 188 stress 0.02169059
## ... Procrustes: rmse 1.995219e-05 max resid 5.000429e-05
## ... Similar to previous best
## Run 189 stress 0.02169059
## ... Procrustes: rmse 5.197288e-06 max resid 1.306749e-05
## ... Similar to previous best
## Run 190 stress 0.06608976
## Run 191 stress 0.02169059
## ... Procrustes: rmse 9.946954e-06 max resid 2.548141e-05
## ... Similar to previous best
## Run 192 stress 0.02169059
## ... Procrustes: rmse 2.612205e-06 max resid 3.643831e-06
## ... Similar to previous best
## Run 193 stress 0.02169059
## ... Procrustes: rmse 6.499632e-06 max resid 1.536907e-05
## ... Similar to previous best
## Run 194 stress 0.02169059
## ... Procrustes: rmse 4.494233e-06 max resid 1.196983e-05
## ... Similar to previous best
## Run 195 stress 0.02169059
## ... Procrustes: rmse 1.755253e-05 max resid 4.352231e-05
## ... Similar to previous best
## Run 196 stress 0.0216906
## ... Procrustes: rmse 3.075222e-05 max resid 7.666938e-05
## ... Similar to previous best
## Run 197 stress 0.1199826
## Run 198 stress 0.06608976
## Run 199 stress 0.1003185
## Run 200 stress 0.02169059
## ... Procrustes: rmse 8.491593e-06 max resid 2.150938e-05
## ... Similar to previous best
## Run 201 stress 0.02169059
## ... Procrustes: rmse 7.090962e-06 max resid 1.849017e-05
## ... Similar to previous best
## Run 202 stress 0.02169059
## ... Procrustes: rmse 3.613862e-06 max resid 9.54897e-06
## ... Similar to previous best
## Run 203 stress 0.06608976
## Run 204 stress 0.06608976
## Run 205 stress 0.06608976
## Run 206 stress 0.02169059
## ... Procrustes: rmse 9.034007e-06 max resid 2.350173e-05
## ... Similar to previous best
## Run 207 stress 0.02169059
## ... Procrustes: rmse 9.117112e-06 max resid 2.380184e-05
## ... Similar to previous best
## Run 208 stress 0.02169059
## ... Procrustes: rmse 2.855582e-06 max resid 6.878092e-06
## ... Similar to previous best
## Run 209 stress 0.0216906
## ... Procrustes: rmse 2.773658e-05 max resid 7.125214e-05
## ... Similar to previous best
## Run 210 stress 0.02169059
## ... Procrustes: rmse 1.660425e-05 max resid 4.337472e-05
## ... Similar to previous best
## Run 211 stress 0.06608976
## Run 212 stress 0.02169059
## ... Procrustes: rmse 3.471308e-06 max resid 8.690009e-06
## ... Similar to previous best
## Run 213 stress 0.02169059
## ... Procrustes: rmse 2.360715e-06 max resid 6.096618e-06
## ... Similar to previous best
## Run 214 stress 0.06608976
## Run 215 stress 0.02169059
## ... Procrustes: rmse 1.615129e-06 max resid 2.853111e-06
## ... Similar to previous best
## Run 216 stress 0.02169059
## ... Procrustes: rmse 5.15175e-06 max resid 1.177496e-05
## ... Similar to previous best
## Run 217 stress 0.02169059
## ... Procrustes: rmse 1.479088e-05 max resid 3.813158e-05
## ... Similar to previous best
## Run 218 stress 0.02169059
## ... Procrustes: rmse 1.719713e-05 max resid 4.526449e-05
## ... Similar to previous best
## Run 219 stress 0.06608976
## Run 220 stress 0.02169059
## ... Procrustes: rmse 6.946407e-06 max resid 1.813651e-05
## ... Similar to previous best
## Run 221 stress 0.02169059
## ... Procrustes: rmse 4.544172e-06 max resid 9.331867e-06
## ... Similar to previous best
## Run 222 stress 0.0216906
## ... Procrustes: rmse 3.241741e-05 max resid 8.329988e-05
## ... Similar to previous best
## Run 223 stress 0.02169059
## ... Procrustes: rmse 6.637492e-06 max resid 1.743707e-05
## ... Similar to previous best
## Run 224 stress 0.02169059
## ... Procrustes: rmse 1.790914e-05 max resid 4.348986e-05
## ... Similar to previous best
## Run 225 stress 0.02169059
## ... Procrustes: rmse 5.168276e-06 max resid 1.152131e-05
## ... Similar to previous best
## Run 226 stress 0.02169059
## ... Procrustes: rmse 6.337859e-06 max resid 1.127083e-05
## ... Similar to previous best
## Run 227 stress 0.0216906
## ... Procrustes: rmse 3.106706e-05 max resid 7.927495e-05
## ... Similar to previous best
## Run 228 stress 0.1221375
## Run 229 stress 0.02169059
## ... Procrustes: rmse 4.159625e-06 max resid 7.585076e-06
## ... Similar to previous best
## Run 230 stress 0.0216906
## ... Procrustes: rmse 2.438558e-05 max resid 6.057926e-05
## ... Similar to previous best
## Run 231 stress 0.2823062
## Run 232 stress 0.02169059
## ... Procrustes: rmse 8.404514e-06 max resid 1.988163e-05
## ... Similar to previous best
## Run 233 stress 0.02169059
## ... Procrustes: rmse 1.931394e-05 max resid 4.985019e-05
## ... Similar to previous best
## Run 234 stress 0.02169059
## ... Procrustes: rmse 2.738904e-06 max resid 6.680733e-06
## ... Similar to previous best
## Run 235 stress 0.02169059
## ... Procrustes: rmse 1.760389e-05 max resid 4.381361e-05
## ... Similar to previous best
## Run 236 stress 0.02169059
## ... Procrustes: rmse 3.950975e-06 max resid 7.29562e-06
## ... Similar to previous best
## Run 237 stress 0.312224
## Run 238 stress 0.0216906
## ... Procrustes: rmse 2.60753e-05 max resid 6.452123e-05
## ... Similar to previous best
## Run 239 stress 0.02169059
## ... Procrustes: rmse 1.860086e-05 max resid 5.042004e-05
## ... Similar to previous best
## Run 240 stress 0.02169059
## ... Procrustes: rmse 2.163095e-05 max resid 5.607181e-05
## ... Similar to previous best
## Run 241 stress 0.1208472
## Run 242 stress 0.02169059
## ... Procrustes: rmse 5.506179e-06 max resid 1.111274e-05
## ... Similar to previous best
## Run 243 stress 0.02169059
## ... Procrustes: rmse 6.141488e-06 max resid 1.37088e-05
## ... Similar to previous best
## Run 244 stress 0.02169059
## ... Procrustes: rmse 8.317374e-06 max resid 2.07451e-05
## ... Similar to previous best
## Run 245 stress 0.1199826
## Run 246 stress 0.02169059
## ... Procrustes: rmse 7.60632e-06 max resid 1.928061e-05
## ... Similar to previous best
## Run 247 stress 0.02169059
## ... Procrustes: rmse 5.834838e-06 max resid 1.356386e-05
## ... Similar to previous best
## Run 248 stress 0.02169059
## ... Procrustes: rmse 1.317294e-05 max resid 3.195895e-05
## ... Similar to previous best
## Run 249 stress 0.02169059
## ... Procrustes: rmse 7.885917e-06 max resid 1.914748e-05
## ... Similar to previous best
## Run 250 stress 0.02169059
## ... Procrustes: rmse 5.33405e-06 max resid 1.000472e-05
## ... Similar to previous best
## Run 251 stress 0.06608976
## Run 252 stress 0.125519
## Run 253 stress 0.06608976
## Run 254 stress 0.02169059
## ... Procrustes: rmse 6.356603e-06 max resid 1.082579e-05
## ... Similar to previous best
## Run 255 stress 0.02169059
## ... Procrustes: rmse 3.418155e-06 max resid 5.140126e-06
## ... Similar to previous best
## Run 256 stress 0.0216906
## ... Procrustes: rmse 3.505889e-05 max resid 8.760894e-05
## ... Similar to previous best
## Run 257 stress 0.02169059
## ... Procrustes: rmse 7.344193e-06 max resid 1.767252e-05
## ... Similar to previous best
## Run 258 stress 0.02169059
## ... Procrustes: rmse 5.722506e-06 max resid 1.019604e-05
## ... Similar to previous best
## Run 259 stress 0.02169059
## ... Procrustes: rmse 1.876315e-06 max resid 4.987413e-06
## ... Similar to previous best
## Run 260 stress 0.06608976
## Run 261 stress 0.02169059
## ... Procrustes: rmse 8.04779e-06 max resid 2.046464e-05
## ... Similar to previous best
## Run 262 stress 0.06608976
## Run 263 stress 0.06608976
## Run 264 stress 0.02169059
## ... Procrustes: rmse 4.723788e-06 max resid 8.612506e-06
## ... Similar to previous best
## Run 265 stress 0.02169059
## ... Procrustes: rmse 3.549711e-06 max resid 9.32194e-06
## ... Similar to previous best
## Run 266 stress 0.02169059
## ... Procrustes: rmse 4.219498e-06 max resid 1.123524e-05
## ... Similar to previous best
## Run 267 stress 0.06608976
## Run 268 stress 0.02169059
## ... Procrustes: rmse 6.470568e-06 max resid 9.215529e-06
## ... Similar to previous best
## Run 269 stress 0.02169059
## ... Procrustes: rmse 7.576925e-06 max resid 1.431971e-05
## ... Similar to previous best
## Run 270 stress 0.02169059
## ... Procrustes: rmse 2.035632e-05 max resid 5.243362e-05
## ... Similar to previous best
## Run 271 stress 0.02169059
## ... Procrustes: rmse 2.884184e-06 max resid 5.814028e-06
## ... Similar to previous best
## Run 272 stress 0.0216906
## ... Procrustes: rmse 2.701547e-05 max resid 6.896195e-05
## ... Similar to previous best
## Run 273 stress 0.02169059
## ... Procrustes: rmse 1.670036e-05 max resid 4.25909e-05
## ... Similar to previous best
## Run 274 stress 0.1199826
## Run 275 stress 0.06608976
## Run 276 stress 0.06608976
## Run 277 stress 0.02169059
## ... Procrustes: rmse 9.025911e-06 max resid 2.237477e-05
## ... Similar to previous best
## Run 278 stress 0.06608976
## Run 279 stress 0.02169059
## ... Procrustes: rmse 2.799624e-06 max resid 5.897658e-06
## ... Similar to previous best
## Run 280 stress 0.02169059
## ... Procrustes: rmse 5.269415e-06 max resid 1.247237e-05
## ... Similar to previous best
## Run 281 stress 0.3407335
## Run 282 stress 0.0216906
## ... Procrustes: rmse 2.891837e-05 max resid 7.342737e-05
## ... Similar to previous best
## Run 283 stress 0.02169059
## ... Procrustes: rmse 1.29169e-05 max resid 3.372886e-05
## ... Similar to previous best
## Run 284 stress 0.02169059
## ... Procrustes: rmse 4.668902e-06 max resid 1.117227e-05
## ... Similar to previous best
## Run 285 stress 0.02169059
## ... Procrustes: rmse 2.356363e-06 max resid 5.081543e-06
## ... Similar to previous best
## Run 286 stress 0.02169059
## ... Procrustes: rmse 1.119897e-05 max resid 2.988498e-05
## ... Similar to previous best
## Run 287 stress 0.0216906
## ... Procrustes: rmse 3.215654e-05 max resid 8.421776e-05
## ... Similar to previous best
## Run 288 stress 0.1223425
## Run 289 stress 0.02169059
## ... Procrustes: rmse 4.147597e-06 max resid 1.05342e-05
## ... Similar to previous best
## Run 290 stress 0.3157046
## Run 291 stress 0.02169059
## ... Procrustes: rmse 1.085109e-06 max resid 1.688108e-06
## ... Similar to previous best
## Run 292 stress 0.02169059
## ... Procrustes: rmse 2.048062e-05 max resid 4.99745e-05
## ... Similar to previous best
## Run 293 stress 0.02169059
## ... Procrustes: rmse 3.673153e-06 max resid 8.986777e-06
## ... Similar to previous best
## Run 294 stress 0.02169059
## ... Procrustes: rmse 5.472977e-06 max resid 1.426624e-05
## ... Similar to previous best
## Run 295 stress 0.06608976
## Run 296 stress 0.02169059
## ... Procrustes: rmse 2.62083e-06 max resid 4.283234e-06
## ... Similar to previous best
## Run 297 stress 0.02169061
## ... Procrustes: rmse 1.229136e-05 max resid 2.359322e-05
## ... Similar to previous best
## Run 298 stress 0.02169059
## ... Procrustes: rmse 2.284282e-05 max resid 5.893928e-05
## ... Similar to previous best
## Run 299 stress 0.02169059
## ... Procrustes: rmse 2.928524e-06 max resid 3.78907e-06
## ... Similar to previous best
## Run 300 stress 0.02169059
## ... Procrustes: rmse 2.285542e-06 max resid 6.144151e-06
## ... Similar to previous best
## Run 301 stress 0.02169059
## ... Procrustes: rmse 1.183588e-06 max resid 2.062473e-06
## ... Similar to previous best
## Run 302 stress 0.06608976
## Run 303 stress 0.2850338
## Run 304 stress 0.02169059
## ... Procrustes: rmse 1.224638e-05 max resid 3.19032e-05
## ... Similar to previous best
## Run 305 stress 0.02169059
## ... Procrustes: rmse 5.483349e-06 max resid 1.304932e-05
## ... Similar to previous best
## Run 306 stress 0.02169059
## ... Procrustes: rmse 2.574892e-06 max resid 3.781145e-06
## ... Similar to previous best
## Run 307 stress 0.06608976
## Run 308 stress 0.1223428
## Run 309 stress 0.125519
## Run 310 stress 0.02169059
## ... Procrustes: rmse 2.986589e-06 max resid 6.536468e-06
## ... Similar to previous best
## Run 311 stress 0.02169059
## ... Procrustes: rmse 1.037201e-06 max resid 1.758263e-06
## ... Similar to previous best
## Run 312 stress 0.02169059
## ... Procrustes: rmse 4.501315e-06 max resid 1.186785e-05
## ... Similar to previous best
## Run 313 stress 0.0216906
## ... Procrustes: rmse 2.812204e-05 max resid 7.354077e-05
## ... Similar to previous best
## Run 314 stress 0.02169059
## ... Procrustes: rmse 1.489341e-05 max resid 3.845911e-05
## ... Similar to previous best
## Run 315 stress 0.02169059
## ... Procrustes: rmse 1.225499e-05 max resid 2.564589e-05
## ... Similar to previous best
## Run 316 stress 0.02169059
## ... Procrustes: rmse 8.424778e-06 max resid 2.134455e-05
## ... Similar to previous best
## Run 317 stress 0.02169059
## ... Procrustes: rmse 7.068847e-06 max resid 1.931308e-05
## ... Similar to previous best
## Run 318 stress 0.02169059
## ... Procrustes: rmse 2.533954e-05 max resid 6.233724e-05
## ... Similar to previous best
## Run 319 stress 0.02169059
## ... Procrustes: rmse 5.43644e-06 max resid 1.385763e-05
## ... Similar to previous best
## Run 320 stress 0.02169059
## ... Procrustes: rmse 5.912315e-06 max resid 1.06871e-05
## ... Similar to previous best
## Run 321 stress 0.02169059
## ... Procrustes: rmse 4.043358e-06 max resid 8.431126e-06
## ... Similar to previous best
## Run 322 stress 0.02169059
## ... Procrustes: rmse 3.405245e-06 max resid 9.168541e-06
## ... Similar to previous best
## Run 323 stress 0.02169059
## ... Procrustes: rmse 1.245065e-05 max resid 3.383034e-05
## ... Similar to previous best
## Run 324 stress 0.02169059
## ... Procrustes: rmse 1.902815e-05 max resid 4.903303e-05
## ... Similar to previous best
## Run 325 stress 0.02169059
## ... Procrustes: rmse 1.557912e-05 max resid 3.971984e-05
## ... Similar to previous best
## Run 326 stress 0.06608976
## Run 327 stress 0.02169059
## ... Procrustes: rmse 4.272822e-06 max resid 1.062226e-05
## ... Similar to previous best
## Run 328 stress 0.06608976
## Run 329 stress 0.02169059
## ... Procrustes: rmse 7.449634e-06 max resid 1.517537e-05
## ... Similar to previous best
## Run 330 stress 0.06608976
## Run 331 stress 0.1199826
## Run 332 stress 0.02169059
## ... Procrustes: rmse 2.405253e-05 max resid 6.024737e-05
## ... Similar to previous best
## Run 333 stress 0.02169059
## ... Procrustes: rmse 2.519454e-06 max resid 6.41436e-06
## ... Similar to previous best
## Run 334 stress 0.02169059
## ... Procrustes: rmse 6.51532e-06 max resid 1.629706e-05
## ... Similar to previous best
## Run 335 stress 0.02169059
## ... Procrustes: rmse 8.856487e-06 max resid 2.245504e-05
## ... Similar to previous best
## Run 336 stress 0.02169059
## ... Procrustes: rmse 6.723247e-06 max resid 1.640384e-05
## ... Similar to previous best
## Run 337 stress 0.02169059
## ... Procrustes: rmse 6.886255e-06 max resid 1.824988e-05
## ... Similar to previous best
## Run 338 stress 0.02169059
## ... Procrustes: rmse 1.054634e-05 max resid 2.739449e-05
## ... Similar to previous best
## Run 339 stress 0.02169059
## ... Procrustes: rmse 1.142273e-05 max resid 2.842518e-05
## ... Similar to previous best
## Run 340 stress 0.02169059
## ... Procrustes: rmse 8.176165e-06 max resid 2.178986e-05
## ... Similar to previous best
## Run 341 stress 0.02169059
## ... Procrustes: rmse 2.784223e-06 max resid 7.229843e-06
## ... Similar to previous best
## Run 342 stress 0.02169059
## ... Procrustes: rmse 4.771313e-06 max resid 8.171872e-06
## ... Similar to previous best
## Run 343 stress 0.02169059
## ... Procrustes: rmse 1.58583e-05 max resid 3.864055e-05
## ... Similar to previous best
## Run 344 stress 0.02169059
## ... Procrustes: rmse 3.30839e-06 max resid 5.81406e-06
## ... Similar to previous best
## Run 345 stress 0.02169059
## ... Procrustes: rmse 9.099235e-06 max resid 1.668721e-05
## ... Similar to previous best
## Run 346 stress 0.02169059
## ... Procrustes: rmse 7.209847e-06 max resid 1.751398e-05
## ... Similar to previous best
## Run 347 stress 0.06608976
## Run 348 stress 0.02169059
## ... Procrustes: rmse 1.502358e-05 max resid 3.85576e-05
## ... Similar to previous best
## Run 349 stress 0.02169059
## ... Procrustes: rmse 5.797363e-06 max resid 1.258108e-05
## ... Similar to previous best
## Run 350 stress 0.02169059
## ... Procrustes: rmse 6.584141e-06 max resid 1.651205e-05
## ... Similar to previous best
## Run 351 stress 0.02169059
## ... Procrustes: rmse 1.325061e-06 max resid 2.208057e-06
## ... Similar to previous best
## Run 352 stress 0.02169059
## ... Procrustes: rmse 7.129038e-06 max resid 1.551479e-05
## ... Similar to previous best
## Run 353 stress 0.02169059
## ... Procrustes: rmse 1.213905e-05 max resid 2.917992e-05
## ... Similar to previous best
## Run 354 stress 0.02169059
## ... Procrustes: rmse 2.672324e-06 max resid 5.120165e-06
## ... Similar to previous best
## Run 355 stress 0.02169059
## ... Procrustes: rmse 1.200941e-05 max resid 3.084242e-05
## ... Similar to previous best
## Run 356 stress 0.1221372
## Run 357 stress 0.02169059
## ... Procrustes: rmse 3.090732e-06 max resid 7.760157e-06
## ... Similar to previous best
## Run 358 stress 0.1199826
## Run 359 stress 0.02169059
## ... Procrustes: rmse 2.338641e-06 max resid 3.907797e-06
## ... Similar to previous best
## Run 360 stress 0.0216906
## ... Procrustes: rmse 2.596527e-05 max resid 6.723069e-05
## ... Similar to previous best
## Run 361 stress 0.02169059
## ... Procrustes: rmse 2.016632e-05 max resid 5.199071e-05
## ... Similar to previous best
## Run 362 stress 0.1221382
## Run 363 stress 0.02169059
## ... Procrustes: rmse 1.499216e-05 max resid 3.864113e-05
## ... Similar to previous best
## Run 364 stress 0.06608976
## Run 365 stress 0.02169059
## ... Procrustes: rmse 7.246244e-06 max resid 1.63018e-05
## ... Similar to previous best
## Run 366 stress 0.02169059
## ... Procrustes: rmse 6.449822e-06 max resid 1.666097e-05
## ... Similar to previous best
## Run 367 stress 0.1255191
## Run 368 stress 0.02169059
## ... Procrustes: rmse 9.406313e-07 max resid 1.70971e-06
## ... Similar to previous best
## Run 369 stress 0.02169059
## ... Procrustes: rmse 3.946568e-06 max resid 1.034301e-05
## ... Similar to previous best
## Run 370 stress 0.1223429
## Run 371 stress 0.02169059
## ... Procrustes: rmse 4.242135e-06 max resid 8.439268e-06
## ... Similar to previous best
## Run 372 stress 0.06608976
## Run 373 stress 0.02169059
## ... Procrustes: rmse 7.731217e-06 max resid 1.991977e-05
## ... Similar to previous best
## Run 374 stress 0.1208473
## Run 375 stress 0.1208472
## Run 376 stress 0.02169059
## ... Procrustes: rmse 2.578668e-06 max resid 5.76969e-06
## ... Similar to previous best
## Run 377 stress 0.02169059
## ... Procrustes: rmse 6.109811e-06 max resid 1.367169e-05
## ... Similar to previous best
## Run 378 stress 0.02169059
## ... Procrustes: rmse 1.595152e-06 max resid 3.182918e-06
## ... Similar to previous best
## Run 379 stress 0.02169059
## ... Procrustes: rmse 6.15227e-06 max resid 1.4704e-05
## ... Similar to previous best
## Run 380 stress 0.02169059
## ... Procrustes: rmse 1.444146e-05 max resid 3.663193e-05
## ... Similar to previous best
## Run 381 stress 0.02169059
## ... Procrustes: rmse 3.400404e-06 max resid 6.197576e-06
## ... Similar to previous best
## Run 382 stress 0.02169059
## ... Procrustes: rmse 3.378488e-06 max resid 8.850008e-06
## ... Similar to previous best
## Run 383 stress 0.02169059
## ... Procrustes: rmse 5.897707e-06 max resid 1.555752e-05
## ... Similar to previous best
## Run 384 stress 0.02169059
## ... Procrustes: rmse 1.276917e-05 max resid 2.91009e-05
## ... Similar to previous best
## Run 385 stress 0.0216906
## ... Procrustes: rmse 3.124412e-05 max resid 7.837537e-05
## ... Similar to previous best
## Run 386 stress 0.02169059
## ... Procrustes: rmse 1.925983e-05 max resid 4.96676e-05
## ... Similar to previous best
## Run 387 stress 0.02169059
## ... Procrustes: rmse 2.246222e-05 max resid 5.602863e-05
## ... Similar to previous best
## Run 388 stress 0.02169059
## ... Procrustes: rmse 6.278226e-06 max resid 1.698847e-05
## ... Similar to previous best
## Run 389 stress 0.06608976
## Run 390 stress 0.02169059
## ... Procrustes: rmse 1.428119e-05 max resid 3.598061e-05
## ... Similar to previous best
## Run 391 stress 0.1003185
## Run 392 stress 0.06608976
## Run 393 stress 0.02169059
## ... Procrustes: rmse 3.939116e-06 max resid 9.820301e-06
## ... Similar to previous best
## Run 394 stress 0.02169059
## ... Procrustes: rmse 9.879946e-06 max resid 2.533396e-05
## ... Similar to previous best
## Run 395 stress 0.2782524
## Run 396 stress 0.02169059
## ... Procrustes: rmse 6.116566e-06 max resid 1.646012e-05
## ... Similar to previous best
## Run 397 stress 0.02169059
## ... Procrustes: rmse 1.038948e-05 max resid 2.815941e-05
## ... Similar to previous best
## Run 398 stress 0.02169059
## ... Procrustes: rmse 2.441605e-06 max resid 5.765337e-06
## ... Similar to previous best
## Run 399 stress 0.02169059
## ... Procrustes: rmse 6.006437e-06 max resid 1.478104e-05
## ... Similar to previous best
## Run 400 stress 0.02169059
## ... Procrustes: rmse 2.08273e-06 max resid 3.511852e-06
## ... Similar to previous best
## Run 401 stress 0.02169059
## ... Procrustes: rmse 1.274132e-05 max resid 3.343797e-05
## ... Similar to previous best
## Run 402 stress 0.02169059
## ... Procrustes: rmse 4.86883e-06 max resid 9.295102e-06
## ... Similar to previous best
## Run 403 stress 0.06608976
## Run 404 stress 0.02169059
## ... Procrustes: rmse 1.767308e-05 max resid 4.415718e-05
## ... Similar to previous best
## Run 405 stress 0.0216906
## ... Procrustes: rmse 3.162082e-05 max resid 8.145578e-05
## ... Similar to previous best
## Run 406 stress 0.02169059
## ... Procrustes: rmse 9.807054e-06 max resid 2.238752e-05
## ... Similar to previous best
## Run 407 stress 0.02169059
## ... Procrustes: rmse 6.433012e-06 max resid 1.587074e-05
## ... Similar to previous best
## Run 408 stress 0.0216906
## ... Procrustes: rmse 2.473607e-05 max resid 6.439514e-05
## ... Similar to previous best
## Run 409 stress 0.02169059
## ... Procrustes: rmse 1.787638e-05 max resid 3.680917e-05
## ... Similar to previous best
## Run 410 stress 0.02169059
## ... Procrustes: rmse 1.779489e-05 max resid 4.216982e-05
## ... Similar to previous best
## Run 411 stress 0.06608976
## Run 412 stress 0.02169059
## ... Procrustes: rmse 2.934311e-06 max resid 5.644619e-06
## ... Similar to previous best
## Run 413 stress 0.02169059
## ... Procrustes: rmse 1.245442e-05 max resid 3.194743e-05
## ... Similar to previous best
## Run 414 stress 0.06608976
## Run 415 stress 0.02169059
## ... Procrustes: rmse 2.61895e-06 max resid 6.200008e-06
## ... Similar to previous best
## Run 416 stress 0.02169059
## ... Procrustes: rmse 7.810155e-06 max resid 1.950797e-05
## ... Similar to previous best
## Run 417 stress 0.02169059
## ... Procrustes: rmse 1.922928e-05 max resid 4.816067e-05
## ... Similar to previous best
## Run 418 stress 0.02169059
## ... Procrustes: rmse 2.168409e-06 max resid 4.372777e-06
## ... Similar to previous best
## Run 419 stress 0.06608976
## Run 420 stress 0.02169059
## ... Procrustes: rmse 4.818164e-06 max resid 1.238087e-05
## ... Similar to previous best
## Run 421 stress 0.02169059
## ... Procrustes: rmse 6.943152e-06 max resid 1.832948e-05
## ... Similar to previous best
## Run 422 stress 0.06608976
## Run 423 stress 0.02169059
## ... Procrustes: rmse 2.309933e-06 max resid 5.980854e-06
## ... Similar to previous best
## Run 424 stress 0.02169059
## ... Procrustes: rmse 2.630861e-05 max resid 6.523316e-05
## ... Similar to previous best
## Run 425 stress 0.06608976
## Run 426 stress 0.02169059
## ... Procrustes: rmse 1.876695e-05 max resid 4.816312e-05
## ... Similar to previous best
## Run 427 stress 0.02169059
## ... Procrustes: rmse 2.911778e-06 max resid 7.692775e-06
## ... Similar to previous best
## Run 428 stress 0.1223424
## Run 429 stress 0.06608976
## Run 430 stress 0.02169059
## ... Procrustes: rmse 3.909658e-06 max resid 9.556259e-06
## ... Similar to previous best
## Run 431 stress 0.0216906
## ... Procrustes: rmse 2.714909e-05 max resid 6.841609e-05
## ... Similar to previous best
## Run 432 stress 0.02169059
## ... Procrustes: rmse 7.644531e-06 max resid 1.959228e-05
## ... Similar to previous best
## Run 433 stress 0.06608976
## Run 434 stress 0.02169059
## ... Procrustes: rmse 4.537838e-06 max resid 8.742242e-06
## ... Similar to previous best
## Run 435 stress 0.02169059
## ... Procrustes: rmse 4.194112e-06 max resid 1.077651e-05
## ... Similar to previous best
## Run 436 stress 0.06608976
## Run 437 stress 0.02169059
## ... Procrustes: rmse 5.682567e-06 max resid 1.50186e-05
## ... Similar to previous best
## Run 438 stress 0.02169059
## ... Procrustes: rmse 5.990555e-06 max resid 1.223219e-05
## ... Similar to previous best
## Run 439 stress 0.0216906
## ... Procrustes: rmse 3.069765e-05 max resid 7.787803e-05
## ... Similar to previous best
## Run 440 stress 0.02169059
## ... Procrustes: rmse 1.558274e-05 max resid 3.922267e-05
## ... Similar to previous best
## Run 441 stress 0.02169059
## ... Procrustes: rmse 5.548166e-06 max resid 1.197009e-05
## ... Similar to previous best
## Run 442 stress 0.02169059
## ... Procrustes: rmse 7.641599e-06 max resid 1.575065e-05
## ... Similar to previous best
## Run 443 stress 0.06608976
## Run 444 stress 0.02169059
## ... Procrustes: rmse 8.093457e-06 max resid 1.969214e-05
## ... Similar to previous best
## Run 445 stress 0.02169059
## ... Procrustes: rmse 1.170559e-05 max resid 2.991166e-05
## ... Similar to previous best
## Run 446 stress 0.06608976
## Run 447 stress 0.3403702
## Run 448 stress 0.02169059
## ... Procrustes: rmse 1.109109e-05 max resid 2.732094e-05
## ... Similar to previous best
## Run 449 stress 0.02169059
## ... Procrustes: rmse 8.09627e-07 max resid 1.302912e-06
## ... Similar to previous best
## Run 450 stress 0.02169059
## ... Procrustes: rmse 2.12517e-05 max resid 5.283935e-05
## ... Similar to previous best
## Run 451 stress 0.02169059
## ... Procrustes: rmse 4.924433e-06 max resid 1.076522e-05
## ... Similar to previous best
## Run 452 stress 0.02169059
## ... Procrustes: rmse 6.64927e-06 max resid 1.562704e-05
## ... Similar to previous best
## Run 453 stress 0.06608976
## Run 454 stress 0.02169059
## ... Procrustes: rmse 2.245023e-06 max resid 5.401344e-06
## ... Similar to previous best
## Run 455 stress 0.02169059
## ... Procrustes: rmse 6.859999e-06 max resid 1.658281e-05
## ... Similar to previous best
## Run 456 stress 0.1208472
## Run 457 stress 0.02169059
## ... Procrustes: rmse 5.438026e-06 max resid 1.226957e-05
## ... Similar to previous best
## Run 458 stress 0.02169059
## ... Procrustes: rmse 9.877856e-06 max resid 2.437767e-05
## ... Similar to previous best
## Run 459 stress 0.02169059
## ... Procrustes: rmse 3.124906e-06 max resid 8.21106e-06
## ... Similar to previous best
## Run 460 stress 0.02169059
## ... Procrustes: rmse 9.741047e-06 max resid 2.441042e-05
## ... Similar to previous best
## Run 461 stress 0.02169059
## ... Procrustes: rmse 7.799106e-06 max resid 1.627724e-05
## ... Similar to previous best
## Run 462 stress 0.02169059
## ... Procrustes: rmse 1.145442e-05 max resid 3.116786e-05
## ... Similar to previous best
## Run 463 stress 0.02169059
## ... Procrustes: rmse 6.111696e-06 max resid 1.467281e-05
## ... Similar to previous best
## Run 464 stress 0.02169059
## ... Procrustes: rmse 3.744773e-06 max resid 9.264248e-06
## ... Similar to previous best
## Run 465 stress 0.02169059
## ... Procrustes: rmse 2.925413e-06 max resid 7.669836e-06
## ... Similar to previous best
## Run 466 stress 0.02169059
## ... Procrustes: rmse 5.439842e-06 max resid 1.070238e-05
## ... Similar to previous best
## Run 467 stress 0.02169059
## ... Procrustes: rmse 3.685503e-06 max resid 7.432283e-06
## ... Similar to previous best
## Run 468 stress 0.02169059
## ... Procrustes: rmse 9.978312e-06 max resid 2.621889e-05
## ... Similar to previous best
## Run 469 stress 0.06608976
## Run 470 stress 0.02169059
## ... Procrustes: rmse 2.478741e-06 max resid 5.849657e-06
## ... Similar to previous best
## Run 471 stress 0.02169059
## ... Procrustes: rmse 1.031016e-05 max resid 2.656765e-05
## ... Similar to previous best
## Run 472 stress 0.02169059
## ... Procrustes: rmse 1.381854e-05 max resid 3.453972e-05
## ... Similar to previous best
## Run 473 stress 0.02169059
## ... Procrustes: rmse 1.706112e-05 max resid 4.461857e-05
## ... Similar to previous best
## Run 474 stress 0.02169059
## ... Procrustes: rmse 7.564432e-06 max resid 1.965851e-05
## ... Similar to previous best
## Run 475 stress 0.0216906
## ... Procrustes: rmse 2.554668e-05 max resid 6.334215e-05
## ... Similar to previous best
## Run 476 stress 0.06608976
## Run 477 stress 0.02169059
## ... Procrustes: rmse 8.09441e-06 max resid 2.091696e-05
## ... Similar to previous best
## Run 478 stress 0.02169059
## ... Procrustes: rmse 1.913716e-05 max resid 5.030055e-05
## ... Similar to previous best
## Run 479 stress 0.02169059
## ... Procrustes: rmse 1.821113e-05 max resid 4.516937e-05
## ... Similar to previous best
## Run 480 stress 0.02169059
## ... Procrustes: rmse 7.815976e-06 max resid 1.690971e-05
## ... Similar to previous best
## Run 481 stress 0.02169059
## ... Procrustes: rmse 8.938665e-06 max resid 2.269012e-05
## ... Similar to previous best
## Run 482 stress 0.02169059
## ... Procrustes: rmse 6.318596e-06 max resid 1.652312e-05
## ... Similar to previous best
## Run 483 stress 0.02169059
## ... Procrustes: rmse 3.573941e-06 max resid 7.117891e-06
## ... Similar to previous best
## Run 484 stress 0.02169059
## ... Procrustes: rmse 1.931601e-05 max resid 4.82781e-05
## ... Similar to previous best
## Run 485 stress 0.06608976
## Run 486 stress 0.02169059
## ... Procrustes: rmse 1.572054e-05 max resid 4.024382e-05
## ... Similar to previous best
## Run 487 stress 0.06608976
## Run 488 stress 0.02169059
## ... Procrustes: rmse 1.707444e-06 max resid 4.338739e-06
## ... Similar to previous best
## Run 489 stress 0.1223433
## Run 490 stress 0.06608976
## Run 491 stress 0.02169059
## ... Procrustes: rmse 4.034196e-06 max resid 1.070681e-05
## ... Similar to previous best
## Run 492 stress 0.1244005
## Run 493 stress 0.1223427
## Run 494 stress 0.06608976
## Run 495 stress 0.02169059
## ... Procrustes: rmse 3.151897e-06 max resid 5.128838e-06
## ... Similar to previous best
## Run 496 stress 0.02169059
## ... Procrustes: rmse 2.442547e-05 max resid 6.375451e-05
## ... Similar to previous best
## Run 497 stress 0.02169059
## ... Procrustes: rmse 1.459883e-05 max resid 3.661814e-05
## ... Similar to previous best
## Run 498 stress 0.02169059
## ... Procrustes: rmse 6.123225e-06 max resid 1.651022e-05
## ... Similar to previous best
## Run 499 stress 0.02169059
## ... Procrustes: rmse 1.730616e-05 max resid 4.254217e-05
## ... Similar to previous best
## Run 500 stress 0.06608976
## *** Best solution repeated 253 times### Biogeographic
# All sites
envb_NMDS <- metaMDS(envb_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.0162662
## Run 1 stress 0.01626606
## ... New best solution
## ... Procrustes: rmse 5.712361e-05 max resid 0.000169849
## ... Similar to previous best
## Run 2 stress 0.01626602
## ... New best solution
## ... Procrustes: rmse 2.885439e-05 max resid 8.524967e-05
## ... Similar to previous best
## Run 3 stress 0.01626613
## ... Procrustes: rmse 0.0004948126 max resid 0.001483172
## ... Similar to previous best
## Run 4 stress 0.0162662
## ... Procrustes: rmse 0.0005311018 max resid 0.001593173
## ... Similar to previous best
## Run 5 stress 0.01626599
## ... New best solution
## ... Procrustes: rmse 2.060672e-05 max resid 5.844766e-05
## ... Similar to previous best
## Run 6 stress 0.016266
## ... Procrustes: rmse 9.568717e-06 max resid 2.69955e-05
## ... Similar to previous best
## Run 7 stress 0.01626601
## ... Procrustes: rmse 0.0004153208 max resid 0.001243791
## ... Similar to previous best
## Run 8 stress 0.01626604
## ... Procrustes: rmse 0.0004367874 max resid 0.001308221
## ... Similar to previous best
## Run 9 stress 0.01626609
## ... Procrustes: rmse 0.0004545806 max resid 0.001361837
## ... Similar to previous best
## Run 10 stress 0.01626605
## ... Procrustes: rmse 4.097533e-05 max resid 0.0001220673
## ... Similar to previous best
## Run 11 stress 0.016266
## ... Procrustes: rmse 0.0004113825 max resid 0.001231989
## ... Similar to previous best
## Run 12 stress 0.01626646
## ... Procrustes: rmse 0.0006030804 max resid 0.001811849
## ... Similar to previous best
## Run 13 stress 0.01626605
## ... Procrustes: rmse 3.498153e-05 max resid 0.0001040846
## ... Similar to previous best
## Run 14 stress 0.01626617
## ... Procrustes: rmse 0.000498224 max resid 0.001494274
## ... Similar to previous best
## Run 15 stress 0.01626609
## ... Procrustes: rmse 5.673349e-05 max resid 0.0001689632
## ... Similar to previous best
## Run 16 stress 0.01626622
## ... Procrustes: rmse 0.0005105842 max resid 0.001531658
## ... Similar to previous best
## Run 17 stress 0.01626607
## ... Procrustes: rmse 0.0004510312 max resid 0.001351196
## ... Similar to previous best
## Run 18 stress 0.01626612
## ... Procrustes: rmse 6.848724e-05 max resid 0.0002016984
## ... Similar to previous best
## Run 19 stress 0.01626617
## ... Procrustes: rmse 9.207339e-05 max resid 0.0002749687
## ... Similar to previous best
## Run 20 stress 0.01626612
## ... Procrustes: rmse 7.026021e-05 max resid 0.0002091353
## ... Similar to previous best
## Run 21 stress 0.01626612
## ... Procrustes: rmse 7.741612e-05 max resid 0.0002316927
## ... Similar to previous best
## Run 22 stress 0.01626619
## ... Procrustes: rmse 0.0005060751 max resid 0.001518103
## ... Similar to previous best
## Run 23 stress 0.0162662
## ... Procrustes: rmse 0.0005139202 max resid 0.001541901
## ... Similar to previous best
## Run 24 stress 0.01626596
## ... New best solution
## ... Procrustes: rmse 1.619581e-05 max resid 4.755601e-05
## ... Similar to previous best
## Run 25 stress 0.01626615
## ... Procrustes: rmse 0.0004726727 max resid 0.001417369
## ... Similar to previous best
## Run 26 stress 0.01626626
## ... Procrustes: rmse 0.0005216018 max resid 0.001565805
## ... Similar to previous best
## Run 27 stress 0.01626602
## ... Procrustes: rmse 2.920667e-05 max resid 8.497253e-05
## ... Similar to previous best
## Run 28 stress 0.016266
## ... Procrustes: rmse 0.0003977821 max resid 0.001191303
## ... Similar to previous best
## Run 29 stress 0.01626609
## ... Procrustes: rmse 0.0004375168 max resid 0.001310505
## ... Similar to previous best
## Run 30 stress 0.01626625
## ... Procrustes: rmse 0.0005191329 max resid 0.001558337
## ... Similar to previous best
## Run 31 stress 0.01626604
## ... Procrustes: rmse 0.0004158458 max resid 0.001245502
## ... Similar to previous best
## Run 32 stress 0.01626614
## ... Procrustes: rmse 0.0004646264 max resid 0.001392894
## ... Similar to previous best
## Run 33 stress 0.01626629
## ... Procrustes: rmse 0.0005195327 max resid 0.001559259
## ... Similar to previous best
## Run 34 stress 0.01626597
## ... Procrustes: rmse 0.0003757001 max resid 0.001125125
## ... Similar to previous best
## Run 35 stress 0.0162659
## ... New best solution
## ... Procrustes: rmse 4.922929e-05 max resid 0.0001471877
## ... Similar to previous best
## Run 36 stress 0.01626618
## ... Procrustes: rmse 0.0001549626 max resid 0.0004636498
## ... Similar to previous best
## Run 37 stress 0.01626602
## ... Procrustes: rmse 0.0003609525 max resid 0.001080954
## ... Similar to previous best
## Run 38 stress 0.01626594
## ... Procrustes: rmse 0.0003041746 max resid 0.0009105469
## ... Similar to previous best
## Run 39 stress 0.0162661
## ... Procrustes: rmse 0.000132964 max resid 0.0003982212
## ... Similar to previous best
## Run 40 stress 0.01626594
## ... Procrustes: rmse 0.0003080226 max resid 0.0009222395
## ... Similar to previous best
## Run 41 stress 0.01626627
## ... Procrustes: rmse 0.0004756276 max resid 0.001428148
## ... Similar to previous best
## Run 42 stress 0.0162661
## ... Procrustes: rmse 0.0003989995 max resid 0.001195578
## ... Similar to previous best
## Run 43 stress 0.01626635
## ... Procrustes: rmse 0.0005089074 max resid 0.001528994
## ... Similar to previous best
## Run 44 stress 0.01626604
## ... Procrustes: rmse 9.558691e-05 max resid 0.0002865694
## ... Similar to previous best
## Run 45 stress 0.01626605
## ... Procrustes: rmse 0.0003744488 max resid 0.001121557
## ... Similar to previous best
## Run 46 stress 0.0162661
## ... Procrustes: rmse 0.0001282777 max resid 0.0003841562
## ... Similar to previous best
## Run 47 stress 0.0162662
## ... Procrustes: rmse 0.0004313784 max resid 0.001293607
## ... Similar to previous best
## Run 48 stress 0.016266
## ... Procrustes: rmse 0.0003479248 max resid 0.001041896
## ... Similar to previous best
## Run 49 stress 0.01626601
## ... Procrustes: rmse 8.162115e-05 max resid 0.0002443707
## ... Similar to previous best
## Run 50 stress 0.01626592
## ... Procrustes: rmse 2.165134e-05 max resid 6.417205e-05
## ... Similar to previous best
## Run 51 stress 0.01626623
## ... Procrustes: rmse 0.0004594584 max resid 0.001379125
## ... Similar to previous best
## Run 52 stress 0.01626633
## ... Procrustes: rmse 0.0004936933 max resid 0.001482716
## ... Similar to previous best
## Run 53 stress 0.01626613
## ... Procrustes: rmse 0.0004129239 max resid 0.001237923
## ... Similar to previous best
## Run 54 stress 0.01626617
## ... Procrustes: rmse 0.0001488957 max resid 0.000444976
## ... Similar to previous best
## Run 55 stress 0.01626606
## ... Procrustes: rmse 0.0003801413 max resid 0.00113867
## ... Similar to previous best
## Run 56 stress 0.01626626
## ... Procrustes: rmse 0.0001830285 max resid 0.0005475411
## ... Similar to previous best
## Run 57 stress 0.01626613
## ... Procrustes: rmse 0.000144557 max resid 0.0004329601
## ... Similar to previous best
## Run 58 stress 0.01626621
## ... Procrustes: rmse 0.0004521004 max resid 0.001356814
## ... Similar to previous best
## Run 59 stress 0.01626593
## ... Procrustes: rmse 0.0002968717 max resid 0.0008888419
## ... Similar to previous best
## Run 60 stress 0.01626604
## ... Procrustes: rmse 0.0003692716 max resid 0.001106023
## ... Similar to previous best
## Run 61 stress 0.01626621
## ... Procrustes: rmse 0.0001792758 max resid 0.0005369291
## ... Similar to previous best
## Run 62 stress 0.0162661
## ... Procrustes: rmse 0.0003949005 max resid 0.001183068
## ... Similar to previous best
## Run 63 stress 0.01626599
## ... Procrustes: rmse 0.0003388729 max resid 0.00101477
## ... Similar to previous best
## Run 64 stress 0.01626598
## ... Procrustes: rmse 0.0003334415 max resid 0.0009984583
## ... Similar to previous best
## Run 65 stress 0.0162661
## ... Procrustes: rmse 0.0003975525 max resid 0.001191147
## ... Similar to previous best
## Run 66 stress 0.01626599
## ... Procrustes: rmse 0.0003382474 max resid 0.001012887
## ... Similar to previous best
## Run 67 stress 0.01626592
## ... Procrustes: rmse 0.0002887214 max resid 0.0008644557
## ... Similar to previous best
## Run 68 stress 0.01626611
## ... Procrustes: rmse 0.00039178 max resid 0.001173699
## ... Similar to previous best
## Run 69 stress 0.01626599
## ... Procrustes: rmse 0.0003387562 max resid 0.00101439
## ... Similar to previous best
## Run 70 stress 0.01626606
## ... Procrustes: rmse 0.0001112578 max resid 0.0003332144
## ... Similar to previous best
## Run 71 stress 0.01626592
## ... Procrustes: rmse 0.0002898946 max resid 0.0008680136
## ... Similar to previous best
## Run 72 stress 0.01626618
## ... Procrustes: rmse 0.0004385471 max resid 0.001315684
## ... Similar to previous best
## Run 73 stress 0.01626635
## ... Procrustes: rmse 0.0004994995 max resid 0.001500282
## ... Similar to previous best
## Run 74 stress 0.01626586
## ... New best solution
## ... Procrustes: rmse 7.834283e-05 max resid 0.000225784
## ... Similar to previous best
## Run 75 stress 0.0162661
## ... Procrustes: rmse 0.000201239 max resid 0.000603525
## ... Similar to previous best
## Run 76 stress 0.01626609
## ... Procrustes: rmse 0.0003116593 max resid 0.0009227096
## ... Similar to previous best
## Run 77 stress 0.0162661
## ... Procrustes: rmse 0.0002062461 max resid 0.0006189794
## ... Similar to previous best
## Run 78 stress 0.01626602
## ... Procrustes: rmse 0.0001536284 max resid 0.0004588846
## ... Similar to previous best
## Run 79 stress 0.01626607
## ... Procrustes: rmse 0.0001902227 max resid 0.0005703612
## ... Similar to previous best
## Run 80 stress 0.01626595
## ... Procrustes: rmse 0.0002406176 max resid 0.0007089547
## ... Similar to previous best
## Run 81 stress 0.01626607
## ... Procrustes: rmse 0.0003161486 max resid 0.0009373104
## ... Similar to previous best
## Run 82 stress 0.01626619
## ... Procrustes: rmse 0.0003684023 max resid 0.001096779
## ... Similar to previous best
## Run 83 stress 0.01626629
## ... Procrustes: rmse 0.0004094731 max resid 0.001221829
## ... Similar to previous best
## Run 84 stress 0.01626613
## ... Procrustes: rmse 0.0002196929 max resid 0.0006596302
## ... Similar to previous best
## Run 85 stress 0.01626609
## ... Procrustes: rmse 0.0001997892 max resid 0.0005994485
## ... Similar to previous best
## Run 86 stress 0.01626611
## ... Procrustes: rmse 0.0003293662 max resid 0.0009774424
## ... Similar to previous best
## Run 87 stress 0.01626584
## ... New best solution
## ... Procrustes: rmse 7.587771e-05 max resid 0.0002891234
## ... Similar to previous best
## Run 88 stress 0.01626593
## ... Procrustes: rmse 0.0001566247 max resid 0.0004600406
## ... Similar to previous best
## Run 89 stress 0.0162662
## ... Procrustes: rmse 0.0003201865 max resid 0.0009636184
## ... Similar to previous best
## Run 90 stress 0.01626611
## ... Procrustes: rmse 0.0002555805 max resid 0.0007578044
## ... Similar to previous best
## Run 91 stress 0.01626591
## ... Procrustes: rmse 0.000155245 max resid 0.0004655068
## ... Similar to previous best
## Run 92 stress 0.01626626
## ... Procrustes: rmse 0.0003419292 max resid 0.00102949
## ... Similar to previous best
## Run 93 stress 0.01626627
## ... Procrustes: rmse 0.000349296 max resid 0.001051848
## ... Similar to previous best
## Run 94 stress 0.01626604
## ... Procrustes: rmse 0.0002402362 max resid 0.0007214913
## ... Similar to previous best
## Run 95 stress 0.01626619
## ... Procrustes: rmse 0.0003012504 max resid 0.0008953104
## ... Similar to previous best
## Run 96 stress 0.0162662
## ... Procrustes: rmse 0.0003159324 max resid 0.0009506899
## ... Similar to previous best
## Run 97 stress 0.01626598
## ... Procrustes: rmse 0.0002068043 max resid 0.0006209455
## ... Similar to previous best
## Run 98 stress 0.01626614
## ... Procrustes: rmse 0.0002775977 max resid 0.0008243021
## ... Similar to previous best
## Run 99 stress 0.01626632
## ... Procrustes: rmse 0.0003708663 max resid 0.001117176
## ... Similar to previous best
## Run 100 stress 0.01626617
## ... Procrustes: rmse 0.0002838838 max resid 0.0008428793
## ... Similar to previous best
## Run 101 stress 0.3789386
## Run 102 stress 0.01626611
## ... Procrustes: rmse 0.0002810039 max resid 0.0008447346
## ... Similar to previous best
## Run 103 stress 0.01626608
## ... Procrustes: rmse 0.000248218 max resid 0.000740921
## ... Similar to previous best
## Run 104 stress 0.01626583
## ... New best solution
## ... Procrustes: rmse 2.740686e-05 max resid 9.561932e-05
## ... Similar to previous best
## Run 105 stress 0.01626605
## ... Procrustes: rmse 0.0002658515 max resid 0.0007981398
## ... Similar to previous best
## Run 106 stress 0.01626611
## ... Procrustes: rmse 0.0002398143 max resid 0.0007160721
## ... Similar to previous best
## Run 107 stress 0.01626604
## ... Procrustes: rmse 0.0002099333 max resid 0.0006266575
## ... Similar to previous best
## Run 108 stress 0.01626606
## ... Procrustes: rmse 0.0002745893 max resid 0.000824377
## ... Similar to previous best
## Run 109 stress 0.01626602
## ... Procrustes: rmse 0.0001980256 max resid 0.0005896868
## ... Similar to previous best
## Run 110 stress 0.01626601
## ... Procrustes: rmse 0.0001874037 max resid 0.0005591232
## ... Similar to previous best
## Run 111 stress 0.0162661
## ... Procrustes: rmse 0.000237549 max resid 0.0007094234
## ... Similar to previous best
## Run 112 stress 0.01626607
## ... Procrustes: rmse 0.0002211401 max resid 0.0006601363
## ... Similar to previous best
## Run 113 stress 0.01626601
## ... Procrustes: rmse 0.0002435866 max resid 0.0007312742
## ... Similar to previous best
## Run 114 stress 0.01626616
## ... Procrustes: rmse 0.0002453888 max resid 0.0007322515
## ... Similar to previous best
## Run 115 stress 0.01626609
## ... Procrustes: rmse 0.0002244777 max resid 0.0006699707
## ... Similar to previous best
## Run 116 stress 0.01626648
## ... Procrustes: rmse 0.000440142 max resid 0.001325094
## ... Similar to previous best
## Run 117 stress 0.01626613
## ... Procrustes: rmse 0.0003067838 max resid 0.0009217713
## ... Similar to previous best
## Run 118 stress 0.01626619
## ... Procrustes: rmse 0.0003290075 max resid 0.000988984
## ... Similar to previous best
## Run 119 stress 0.01626613
## ... Procrustes: rmse 0.0003062979 max resid 0.000920307
## ... Similar to previous best
## Run 120 stress 0.01626601
## ... Procrustes: rmse 0.0002437642 max resid 0.0007316891
## ... Similar to previous best
## Run 121 stress 0.01626608
## ... Procrustes: rmse 0.0002847051 max resid 0.0008549135
## ... Similar to previous best
## Run 122 stress 0.01626599
## ... Procrustes: rmse 0.0002291138 max resid 0.0006878534
## ... Similar to previous best
## Run 123 stress 0.0162661
## ... Procrustes: rmse 0.0002263164 max resid 0.0006770191
## ... Similar to previous best
## Run 124 stress 0.01626633
## ... Procrustes: rmse 0.0003791628 max resid 0.001140507
## ... Similar to previous best
## Run 125 stress 0.01626632
## ... Procrustes: rmse 0.0003927457 max resid 0.001182062
## ... Similar to previous best
## Run 126 stress 0.01626618
## ... Procrustes: rmse 0.0003291821 max resid 0.0009895474
## ... Similar to previous best
## Run 127 stress 0.01626634
## ... Procrustes: rmse 0.000389724 max resid 0.00117274
## ... Similar to previous best
## Run 128 stress 0.01626604
## ... Procrustes: rmse 0.0002042552 max resid 0.000609648
## ... Similar to previous best
## Run 129 stress 0.01626608
## ... Procrustes: rmse 0.0002810483 max resid 0.0008438171
## ... Similar to previous best
## Run 130 stress 0.01626623
## ... Procrustes: rmse 0.0003546438 max resid 0.001066751
## ... Similar to previous best
## Run 131 stress 0.01626606
## ... Procrustes: rmse 0.0002711207 max resid 0.0008139985
## ... Similar to previous best
## Run 132 stress 0.01626605
## ... Procrustes: rmse 0.000264903 max resid 0.0007952058
## ... Similar to previous best
## Run 133 stress 0.01626599
## ... Procrustes: rmse 0.0002299385 max resid 0.0006903382
## ... Similar to previous best
## Run 134 stress 0.01626615
## ... Procrustes: rmse 0.0002564867 max resid 0.0007659197
## ... Similar to previous best
## Run 135 stress 0.01626594
## ... Procrustes: rmse 0.0001980724 max resid 0.0005944737
## ... Similar to previous best
## Run 136 stress 0.01626608
## ... Procrustes: rmse 0.0002847917 max resid 0.0008551788
## ... Similar to previous best
## Run 137 stress 0.01626586
## ... Procrustes: rmse 0.0001115995 max resid 0.0003357979
## ... Similar to previous best
## Run 138 stress 0.01626601
## ... Procrustes: rmse 0.0002471358 max resid 0.0007419048
## ... Similar to previous best
## Run 139 stress 0.01626621
## ... Procrustes: rmse 0.0002756355 max resid 0.0008231503
## ... Similar to previous best
## Run 140 stress 0.01626628
## ... Procrustes: rmse 0.0003584288 max resid 0.001077867
## ... Similar to previous best
## Run 141 stress 0.01626606
## ... Procrustes: rmse 0.0002727079 max resid 0.0008187414
## ... Similar to previous best
## Run 142 stress 0.01626593
## ... Procrustes: rmse 0.0001361041 max resid 0.0004053888
## ... Similar to previous best
## Run 143 stress 0.01626618
## ... Procrustes: rmse 0.0003318315 max resid 0.0009976613
## ... Similar to previous best
## Run 144 stress 0.01626608
## ... Procrustes: rmse 0.0002788905 max resid 0.0008373263
## ... Similar to previous best
## Run 145 stress 0.01626597
## ... Procrustes: rmse 0.0002207157 max resid 0.0006624747
## ... Similar to previous best
## Run 146 stress 0.0162662
## ... Procrustes: rmse 0.0003382914 max resid 0.001017212
## ... Similar to previous best
## Run 147 stress 0.0162662
## ... Procrustes: rmse 0.0003373196 max resid 0.001014274
## ... Similar to previous best
## Run 148 stress 0.01626609
## ... Procrustes: rmse 0.0002791626 max resid 0.0008379722
## ... Similar to previous best
## Run 149 stress 0.01626593
## ... Procrustes: rmse 0.0001361304 max resid 0.0004054487
## ... Similar to previous best
## Run 150 stress 0.01626602
## ... Procrustes: rmse 0.0001961627 max resid 0.0005853875
## ... Similar to previous best
## Run 151 stress 0.01626607
## ... Procrustes: rmse 0.0002222858 max resid 0.0006636695
## ... Similar to previous best
## Run 152 stress 0.01626625
## ... Procrustes: rmse 0.0003601107 max resid 0.001083299
## ... Similar to previous best
## Run 153 stress 0.01626604
## ... Procrustes: rmse 0.0002638059 max resid 0.0007919356
## ... Similar to previous best
## Run 154 stress 0.01626617
## ... Procrustes: rmse 0.0002729936 max resid 0.000815619
## ... Similar to previous best
## Run 155 stress 0.01626599
## ... Procrustes: rmse 0.0001729493 max resid 0.0005155897
## ... Similar to previous best
## Run 156 stress 0.3789043
## Run 157 stress 0.01626595
## ... Procrustes: rmse 0.0002076161 max resid 0.0006234793
## ... Similar to previous best
## Run 158 stress 0.01626609
## ... Procrustes: rmse 0.0002319183 max resid 0.0006925591
## ... Similar to previous best
## Run 159 stress 0.0162659
## ... Procrustes: rmse 0.0001647367 max resid 0.0004949898
## ... Similar to previous best
## Run 160 stress 0.01626616
## ... Procrustes: rmse 0.0002688618 max resid 0.0008032761
## ... Similar to previous best
## Run 161 stress 0.01626618
## ... Procrustes: rmse 0.0003308689 max resid 0.000994759
## ... Similar to previous best
## Run 162 stress 0.01626616
## ... Procrustes: rmse 0.0003120506 max resid 0.0009374779
## ... Similar to previous best
## Run 163 stress 0.01626606
## ... Procrustes: rmse 0.0002204059 max resid 0.0006580215
## ... Similar to previous best
## Run 164 stress 0.01626628
## ... Procrustes: rmse 0.0003687665 max resid 0.001109381
## ... Similar to previous best
## Run 165 stress 0.01626635
## ... Procrustes: rmse 0.0003968546 max resid 0.001194313
## ... Similar to previous best
## Run 166 stress 0.016266
## ... Procrustes: rmse 0.0001829823 max resid 0.0005458125
## ... Similar to previous best
## Run 167 stress 0.01626607
## ... Procrustes: rmse 0.0002652911 max resid 0.0007960884
## ... Similar to previous best
## Run 168 stress 0.01626617
## ... Procrustes: rmse 0.000269464 max resid 0.0008050679
## ... Similar to previous best
## Run 169 stress 0.01626618
## ... Procrustes: rmse 0.000323436 max resid 0.000972098
## ... Similar to previous best
## Run 170 stress 0.01626613
## ... Procrustes: rmse 0.0002535291 max resid 0.0007572713
## ... Similar to previous best
## Run 171 stress 0.01626603
## ... Procrustes: rmse 0.0002457035 max resid 0.0007373352
## ... Similar to previous best
## Run 172 stress 0.01626597
## ... Procrustes: rmse 0.0002158367 max resid 0.0006480561
## ... Similar to previous best
## Run 173 stress 0.01626622
## ... Procrustes: rmse 0.0003384049 max resid 0.001017294
## ... Similar to previous best
## Run 174 stress 0.01626596
## ... Procrustes: rmse 0.000209713 max resid 0.0006297119
## ... Similar to previous best
## Run 175 stress 0.01626633
## ... Procrustes: rmse 0.0003922645 max resid 0.001180471
## ... Similar to previous best
## Run 176 stress 0.01626614
## ... Procrustes: rmse 0.0003122212 max resid 0.0009382533
## ... Similar to previous best
## Run 177 stress 0.01626613
## ... Procrustes: rmse 0.000253228 max resid 0.0007563782
## ... Similar to previous best
## Run 178 stress 0.01626601
## ... Procrustes: rmse 0.000188275 max resid 0.0005617486
## ... Similar to previous best
## Run 179 stress 0.0162662
## ... Procrustes: rmse 0.0002828084 max resid 0.0008450511
## ... Similar to previous best
## Run 180 stress 0.01626612
## ... Procrustes: rmse 0.0002415557 max resid 0.0007212432
## ... Similar to previous best
## Run 181 stress 0.01626609
## ... Procrustes: rmse 0.0002338081 max resid 0.0006983814
## ... Similar to previous best
## Run 182 stress 0.01626606
## ... Procrustes: rmse 0.0002738753 max resid 0.0008222625
## ... Similar to previous best
## Run 183 stress 0.016266
## ... Procrustes: rmse 0.0001826925 max resid 0.0005450192
## ... Similar to previous best
## Run 184 stress 0.01626627
## ... Procrustes: rmse 0.0003699478 max resid 0.001113055
## ... Similar to previous best
## Run 185 stress 0.01626615
## ... Procrustes: rmse 0.0003138643 max resid 0.0009432033
## ... Similar to previous best
## Run 186 stress 0.01626609
## ... Procrustes: rmse 0.0002899797 max resid 0.0008708254
## ... Similar to previous best
## Run 187 stress 0.01626607
## ... Procrustes: rmse 0.0002761246 max resid 0.0008290283
## ... Similar to previous best
## Run 188 stress 0.01626627
## ... Procrustes: rmse 0.0003545209 max resid 0.001065913
## ... Similar to previous best
## Run 189 stress 0.01626619
## ... Procrustes: rmse 0.0003375185 max resid 0.001014899
## ... Similar to previous best
## Run 190 stress 0.01626634
## ... Procrustes: rmse 0.0003908885 max resid 0.001176288
## ... Similar to previous best
## Run 191 stress 0.0162662
## ... Procrustes: rmse 0.0002749056 max resid 0.0008224058
## ... Similar to previous best
## Run 192 stress 0.01626603
## ... Procrustes: rmse 0.0002015124 max resid 0.0006014391
## ... Similar to previous best
## Run 193 stress 0.01626604
## ... Procrustes: rmse 0.000256723 max resid 0.0007706844
## ... Similar to previous best
## Run 194 stress 0.01626612
## ... Procrustes: rmse 0.0002263978 max resid 0.0006751673
## ... Similar to previous best
## Run 195 stress 0.0162661
## ... Procrustes: rmse 0.000232058 max resid 0.000692717
## ... Similar to previous best
## Run 196 stress 0.0162662
## ... Procrustes: rmse 0.0002753493 max resid 0.0008223917
## ... Similar to previous best
## Run 197 stress 0.01626597
## ... Procrustes: rmse 0.0002163134 max resid 0.0006495201
## ... Similar to previous best
## Run 198 stress 0.01626634
## ... Procrustes: rmse 0.0003879223 max resid 0.00116724
## ... Similar to previous best
## Run 199 stress 0.0162662
## ... Procrustes: rmse 0.0003291751 max resid 0.0009893705
## ... Similar to previous best
## Run 200 stress 0.01626621
## ... Procrustes: rmse 0.0003439429 max resid 0.001034342
## ... Similar to previous best
## Run 201 stress 0.01626614
## ... Procrustes: rmse 0.0003110448 max resid 0.0009346923
## ... Similar to previous best
## Run 202 stress 0.0162663
## ... Procrustes: rmse 0.0003814948 max resid 0.001148025
## ... Similar to previous best
## Run 203 stress 0.01626621
## ... Procrustes: rmse 0.0002739018 max resid 0.0008180855
## ... Similar to previous best
## Run 204 stress 0.016266
## ... Procrustes: rmse 0.0002312803 max resid 0.0006942717
## ... Similar to previous best
## Run 205 stress 0.01626601
## ... Procrustes: rmse 0.0002424219 max resid 0.0007277719
## ... Similar to previous best
## Run 206 stress 0.01626608
## ... Procrustes: rmse 0.0002280081 max resid 0.0006808265
## ... Similar to previous best
## Run 207 stress 0.01626604
## ... Procrustes: rmse 0.0002624447 max resid 0.0007879048
## ... Similar to previous best
## Run 208 stress 0.01626608
## ... Procrustes: rmse 0.0002843227 max resid 0.0008537608
## ... Similar to previous best
## Run 209 stress 0.01626596
## ... Procrustes: rmse 0.0002127731 max resid 0.0006389029
## ... Similar to previous best
## Run 210 stress 0.01626613
## ... Procrustes: rmse 0.0002962404 max resid 0.0008896021
## ... Similar to previous best
## Run 211 stress 0.01626598
## ... Procrustes: rmse 0.0002228412 max resid 0.000669023
## ... Similar to previous best
## Run 212 stress 0.01626618
## ... Procrustes: rmse 0.0003314395 max resid 0.0009964895
## ... Similar to previous best
## Run 213 stress 0.01626624
## ... Procrustes: rmse 0.000346022 max resid 0.001040379
## ... Similar to previous best
## Run 214 stress 0.01626598
## ... Procrustes: rmse 0.0002225158 max resid 0.0006679888
## ... Similar to previous best
## Run 215 stress 0.01626594
## ... Procrustes: rmse 0.0001466732 max resid 0.0004370528
## ... Similar to previous best
## Run 216 stress 0.01626627
## ... Procrustes: rmse 0.0003598345 max resid 0.001082211
## ... Similar to previous best
## Run 217 stress 0.01626609
## ... Procrustes: rmse 0.0002873822 max resid 0.0008629972
## ... Similar to previous best
## Run 218 stress 0.01626605
## ... Procrustes: rmse 0.0002636977 max resid 0.0007915259
## ... Similar to previous best
## Run 219 stress 0.3789043
## Run 220 stress 0.01626605
## ... Procrustes: rmse 0.0002673363 max resid 0.0008026036
## ... Similar to previous best
## Run 221 stress 0.3570272
## Run 222 stress 0.01626604
## ... Procrustes: rmse 0.000263525 max resid 0.0007911245
## ... Similar to previous best
## Run 223 stress 0.01626623
## ... Procrustes: rmse 0.000352305 max resid 0.00105967
## ... Similar to previous best
## Run 224 stress 0.01626613
## ... Procrustes: rmse 0.0002519248 max resid 0.0007524568
## ... Similar to previous best
## Run 225 stress 0.01626597
## ... Procrustes: rmse 0.0002152668 max resid 0.0006446474
## ... Similar to previous best
## Run 226 stress 0.01626623
## ... Procrustes: rmse 0.0003412641 max resid 0.00102595
## ... Similar to previous best
## Run 227 stress 0.01626607
## ... Procrustes: rmse 0.0002721434 max resid 0.0008168888
## ... Similar to previous best
## Run 228 stress 0.01626597
## ... Procrustes: rmse 0.0002187254 max resid 0.0006566787
## ... Similar to previous best
## Run 229 stress 0.01626622
## ... Procrustes: rmse 0.0003413405 max resid 0.001026271
## ... Similar to previous best
## Run 230 stress 0.01626595
## ... Procrustes: rmse 0.0002040686 max resid 0.00061283
## ... Similar to previous best
## Run 231 stress 0.0162659
## ... Procrustes: rmse 0.0001660045 max resid 0.0004987893
## ... Similar to previous best
## Run 232 stress 0.01626605
## ... Procrustes: rmse 0.0002462565 max resid 0.0007387097
## ... Similar to previous best
## Run 233 stress 0.01626619
## ... Procrustes: rmse 0.0002786225 max resid 0.0008325189
## ... Similar to previous best
## Run 234 stress 0.01626624
## ... Procrustes: rmse 0.0003535396 max resid 0.001063278
## ... Similar to previous best
## Run 235 stress 0.01626629
## ... Procrustes: rmse 0.0003805462 max resid 0.001145155
## ... Similar to previous best
## Run 236 stress 0.01626628
## ... Procrustes: rmse 0.0003658977 max resid 0.00110062
## ... Similar to previous best
## Run 237 stress 0.01626602
## ... Procrustes: rmse 0.0002487809 max resid 0.0007468569
## ... Similar to previous best
## Run 238 stress 0.01626583
## ... New best solution
## ... Procrustes: rmse 4.431519e-05 max resid 0.000132932
## ... Similar to previous best
## Run 239 stress 0.01626594
## ... Procrustes: rmse 0.000183747 max resid 0.0005484583
## ... Similar to previous best
## Run 240 stress 0.01626638
## ... Procrustes: rmse 0.0003698509 max resid 0.001113799
## ... Similar to previous best
## Run 241 stress 0.01626607
## ... Procrustes: rmse 0.0002324915 max resid 0.0006981049
## ... Similar to previous best
## Run 242 stress 0.01626617
## ... Procrustes: rmse 0.0003134418 max resid 0.000937035
## ... Similar to previous best
## Run 243 stress 0.01626614
## ... Procrustes: rmse 0.0002889485 max resid 0.0008632797
## ... Similar to previous best
## Run 244 stress 0.016266
## ... Procrustes: rmse 0.0001971249 max resid 0.0005918645
## ... Similar to previous best
## Run 245 stress 0.01626633
## ... Procrustes: rmse 0.0003373544 max resid 0.001015211
## ... Similar to previous best
## Run 246 stress 0.01626606
## ... Procrustes: rmse 0.0002259896 max resid 0.0006785918
## ... Similar to previous best
## Run 247 stress 0.01626614
## ... Procrustes: rmse 0.0002542372 max resid 0.0007634783
## ... Similar to previous best
## Run 248 stress 0.01626612
## ... Procrustes: rmse 0.0002557029 max resid 0.0007682473
## ... Similar to previous best
## Run 249 stress 0.01626611
## ... Procrustes: rmse 0.0002888279 max resid 0.0008633424
## ... Similar to previous best
## Run 250 stress 0.01626608
## ... Procrustes: rmse 0.0002710708 max resid 0.0008101255
## ... Similar to previous best
## Run 251 stress 0.01626599
## ... Procrustes: rmse 0.0001892203 max resid 0.0005681817
## ... Similar to previous best
## Run 252 stress 0.01626607
## ... Procrustes: rmse 0.0002351097 max resid 0.0007060626
## ... Similar to previous best
## Run 253 stress 0.01626615
## ... Procrustes: rmse 0.0002972271 max resid 0.0008883715
## ... Similar to previous best
## Run 254 stress 0.016266
## ... Procrustes: rmse 0.0002256202 max resid 0.0006739509
## ... Similar to previous best
## Run 255 stress 0.01626606
## ... Procrustes: rmse 0.0002258559 max resid 0.0006781745
## ... Similar to previous best
## Run 256 stress 0.372311
## Run 257 stress 0.01626616
## ... Procrustes: rmse 0.0002779331 max resid 0.0008356687
## ... Similar to previous best
## Run 258 stress 0.0162661
## ... Procrustes: rmse 0.0002824114 max resid 0.0008441194
## ... Similar to previous best
## Run 259 stress 0.01626615
## ... Procrustes: rmse 0.0003079057 max resid 0.0009205328
## ... Similar to previous best
## Run 260 stress 0.01626611
## ... Procrustes: rmse 0.000287182 max resid 0.0008584336
## ... Similar to previous best
## Run 261 stress 0.01626619
## ... Procrustes: rmse 0.0003163834 max resid 0.0009457647
## ... Similar to previous best
## Run 262 stress 0.01626615
## ... Procrustes: rmse 0.0002923203 max resid 0.0008733138
## ... Similar to previous best
## Run 263 stress 0.01626639
## ... Procrustes: rmse 0.0003663183 max resid 0.001102938
## ... Similar to previous best
## Run 264 stress 0.01626597
## ... Procrustes: rmse 0.0001707335 max resid 0.0005126784
## ... Similar to previous best
## Run 265 stress 0.01626591
## ... Procrustes: rmse 0.000160144 max resid 0.000477716
## ... Similar to previous best
## Run 266 stress 0.01626601
## ... Procrustes: rmse 0.0002027455 max resid 0.0006087515
## ... Similar to previous best
## Run 267 stress 0.01626611
## ... Procrustes: rmse 0.0002809385 max resid 0.0008396978
## ... Similar to previous best
## Run 268 stress 0.01626601
## ... Procrustes: rmse 0.0001973279 max resid 0.0005923609
## ... Similar to previous best
## Run 269 stress 0.0162661
## ... Procrustes: rmse 0.0002509096 max resid 0.0007537754
## ... Similar to previous best
## Run 270 stress 0.01626622
## ... Procrustes: rmse 0.0002956904 max resid 0.0008892311
## ... Similar to previous best
## Run 271 stress 0.01626617
## ... Procrustes: rmse 0.0003170907 max resid 0.0009480508
## ... Similar to previous best
## Run 272 stress 0.01626622
## ... Procrustes: rmse 0.0003043745 max resid 0.0009156871
## ... Similar to previous best
## Run 273 stress 0.01626596
## ... Procrustes: rmse 0.0001703872 max resid 0.0005117012
## ... Similar to previous best
## Run 274 stress 0.01626614
## ... Procrustes: rmse 0.0002664898 max resid 0.000801005
## ... Similar to previous best
## Run 275 stress 0.01626608
## ... Procrustes: rmse 0.0002719971 max resid 0.0008129391
## ... Similar to previous best
## Run 276 stress 0.01626634
## ... Procrustes: rmse 0.0003463956 max resid 0.001042677
## ... Similar to previous best
## Run 277 stress 0.01626594
## ... Procrustes: rmse 0.0001889268 max resid 0.0005639851
## ... Similar to previous best
## Run 278 stress 0.01626607
## ... Procrustes: rmse 0.0002340297 max resid 0.0007027827
## ... Similar to previous best
## Run 279 stress 0.01626616
## ... Procrustes: rmse 0.0002789142 max resid 0.0008386496
## ... Similar to previous best
## Run 280 stress 0.01626609
## ... Procrustes: rmse 0.0002339247 max resid 0.0007022279
## ... Similar to previous best
## Run 281 stress 0.01626612
## ... Procrustes: rmse 0.0002941251 max resid 0.0008792352
## ... Similar to previous best
## Run 282 stress 0.01626618
## ... Procrustes: rmse 0.0002792467 max resid 0.0008394348
## ... Similar to previous best
## Run 283 stress 0.01626617
## ... Procrustes: rmse 0.0002718711 max resid 0.0008169474
## ... Similar to previous best
## Run 284 stress 0.01626619
## ... Procrustes: rmse 0.0002806804 max resid 0.0008437209
## ... Similar to previous best
## Run 285 stress 0.01626613
## ... Procrustes: rmse 0.0002656861 max resid 0.0007985692
## ... Similar to previous best
## Run 286 stress 0.01626616
## ... Procrustes: rmse 0.0002784913 max resid 0.0008373575
## ... Similar to previous best
## Run 287 stress 0.016266
## ... Procrustes: rmse 0.0002313495 max resid 0.0006911085
## ... Similar to previous best
## Run 288 stress 0.01626633
## ... Procrustes: rmse 0.0003390486 max resid 0.001020304
## ... Similar to previous best
## Run 289 stress 0.01626634
## ... Procrustes: rmse 0.0003552788 max resid 0.001069727
## ... Similar to previous best
## Run 290 stress 0.01626594
## ... Procrustes: rmse 0.0001896627 max resid 0.0005661462
## ... Similar to previous best
## Run 291 stress 0.01626617
## ... Procrustes: rmse 0.0002827108 max resid 0.0008501331
## ... Similar to previous best
## Run 292 stress 0.01626628
## ... Procrustes: rmse 0.0003302733 max resid 0.0009941196
## ... Similar to previous best
## Run 293 stress 0.01626605
## ... Procrustes: rmse 0.0002247148 max resid 0.0006747677
## ... Similar to previous best
## Run 294 stress 0.01626588
## ... Procrustes: rmse 0.0001297425 max resid 0.0003878608
## ... Similar to previous best
## Run 295 stress 0.01626607
## ... Procrustes: rmse 0.0002673236 max resid 0.0007989149
## ... Similar to previous best
## Run 296 stress 0.01626622
## ... Procrustes: rmse 0.0002938579 max resid 0.0008836337
## ... Similar to previous best
## Run 297 stress 0.0162661
## ... Procrustes: rmse 0.0002856056 max resid 0.0008537093
## ... Similar to previous best
## Run 298 stress 0.01626629
## ... Procrustes: rmse 0.0003187802 max resid 0.0009589531
## ... Similar to previous best
## Run 299 stress 0.01626631
## ... Procrustes: rmse 0.0003381979 max resid 0.001018023
## ... Similar to previous best
## Run 300 stress 0.01626588
## ... Procrustes: rmse 9.572857e-05 max resid 0.0002879943
## ... Similar to previous best
## Run 301 stress 0.01626608
## ... Procrustes: rmse 0.0002730758 max resid 0.0008161386
## ... Similar to previous best
## Run 302 stress 0.01626596
## ... Procrustes: rmse 0.0001695998 max resid 0.0005093494
## ... Similar to previous best
## Run 303 stress 0.01626611
## ... Procrustes: rmse 0.0002441316 max resid 0.0007329808
## ... Similar to previous best
## Run 304 stress 0.01626609
## ... Procrustes: rmse 0.0002401318 max resid 0.0007210857
## ... Similar to previous best
## Run 305 stress 0.01626605
## ... Procrustes: rmse 0.0002222902 max resid 0.000667463
## ... Similar to previous best
## Run 306 stress 0.01626622
## ... Procrustes: rmse 0.0003064159 max resid 0.0009219267
## ... Similar to previous best
## Run 307 stress 0.01626604
## ... Procrustes: rmse 0.0002112385 max resid 0.000634083
## ... Similar to previous best
## Run 308 stress 0.01626612
## ... Procrustes: rmse 0.0002863901 max resid 0.000855799
## ... Similar to previous best
## Run 309 stress 0.01626604
## ... Procrustes: rmse 0.0002160636 max resid 0.000648574
## ... Similar to previous best
## Run 310 stress 0.01626611
## ... Procrustes: rmse 0.0002891957 max resid 0.0008644601
## ... Similar to previous best
## Run 311 stress 0.01626617
## ... Procrustes: rmse 0.0002820729 max resid 0.0008482157
## ... Similar to previous best
## Run 312 stress 0.01626588
## ... Procrustes: rmse 0.0001025922 max resid 0.0003084446
## ... Similar to previous best
## Run 313 stress 0.01626601
## ... Procrustes: rmse 0.000198962 max resid 0.0005973819
## ... Similar to previous best
## Run 314 stress 0.01626591
## ... Procrustes: rmse 0.0001270327 max resid 0.0003817735
## ... Similar to previous best
## Run 315 stress 0.01626639
## ... Procrustes: rmse 0.000354335 max resid 0.001066345
## ... Similar to previous best
## Run 316 stress 0.01626621
## ... Procrustes: rmse 0.000320478 max resid 0.0009579496
## ... Similar to previous best
## Run 317 stress 0.01626622
## ... Procrustes: rmse 0.0002932813 max resid 0.0008818568
## ... Similar to previous best
## Run 318 stress 0.01626633
## ... Procrustes: rmse 0.0003361943 max resid 0.001011705
## ... Similar to previous best
## Run 319 stress 0.01626615
## ... Procrustes: rmse 0.0002748358 max resid 0.000826302
## ... Similar to previous best
## Run 320 stress 0.01626631
## ... Procrustes: rmse 0.0003348601 max resid 0.001007828
## ... Similar to previous best
## Run 321 stress 0.01626625
## ... Procrustes: rmse 0.0003164067 max resid 0.0009521458
## ... Similar to previous best
## Run 322 stress 0.01626599
## ... Procrustes: rmse 0.0001869927 max resid 0.0005614735
## ... Similar to previous best
## Run 323 stress 0.01626614
## ... Procrustes: rmse 0.0003041923 max resid 0.0009093863
## ... Similar to previous best
## Run 324 stress 0.0162662
## ... Procrustes: rmse 0.0002935808 max resid 0.0008830702
## ... Similar to previous best
## Run 325 stress 0.01626604
## ... Procrustes: rmse 0.0002495171 max resid 0.0007455344
## ... Similar to previous best
## Run 326 stress 0.01626595
## ... Procrustes: rmse 0.000195256 max resid 0.000582883
## ... Similar to previous best
## Run 327 stress 0.01626609
## ... Procrustes: rmse 0.0002429314 max resid 0.0007296282
## ... Similar to previous best
## Run 328 stress 0.01626624
## ... Procrustes: rmse 0.000311654 max resid 0.000937771
## ... Similar to previous best
## Run 329 stress 0.01626605
## ... Procrustes: rmse 0.0002578487 max resid 0.0007704883
## ... Similar to previous best
## Run 330 stress 0.01626587
## ... Procrustes: rmse 8.822099e-05 max resid 0.0002654557
## ... Similar to previous best
## Run 331 stress 0.01626617
## ... Procrustes: rmse 0.0002840945 max resid 0.0008543427
## ... Similar to previous best
## Run 332 stress 0.01626608
## ... Procrustes: rmse 0.0002708449 max resid 0.0008093813
## ... Similar to previous best
## Run 333 stress 0.01626597
## ... Procrustes: rmse 0.0001691662 max resid 0.0005078906
## ... Similar to previous best
## Run 334 stress 0.01626587
## ... Procrustes: rmse 0.0001127924 max resid 0.0003377037
## ... Similar to previous best
## Run 335 stress 0.01626608
## ... Procrustes: rmse 0.000237041 max resid 0.0007117484
## ... Similar to previous best
## Run 336 stress 0.01626598
## ... Procrustes: rmse 0.0001803121 max resid 0.0005414736
## ... Similar to previous best
## Run 337 stress 0.01626606
## ... Procrustes: rmse 0.0002169438 max resid 0.0006510564
## ... Similar to previous best
## Run 338 stress 0.01626627
## ... Procrustes: rmse 0.0003116964 max resid 0.0009375879
## ... Similar to previous best
## Run 339 stress 0.01626627
## ... Procrustes: rmse 0.0003250325 max resid 0.0009782603
## ... Similar to previous best
## Run 340 stress 0.01626595
## ... Procrustes: rmse 0.0001939926 max resid 0.0005790845
## ... Similar to previous best
## Run 341 stress 0.01626612
## ... Procrustes: rmse 0.0002505279 max resid 0.0007522991
## ... Similar to previous best
## Run 342 stress 0.01626609
## ... Procrustes: rmse 0.0002393216 max resid 0.0007185736
## ... Similar to previous best
## Run 343 stress 0.01626605
## ... Procrustes: rmse 0.00020836 max resid 0.0006251391
## ... Similar to previous best
## Run 344 stress 0.01626629
## ... Procrustes: rmse 0.0003262716 max resid 0.0009817421
## ... Similar to previous best
## Run 345 stress 0.0162661
## ... Procrustes: rmse 0.0002815542 max resid 0.0008415577
## ... Similar to previous best
## Run 346 stress 0.01626601
## ... Procrustes: rmse 0.0001998216 max resid 0.0005999423
## ... Similar to previous best
## Run 347 stress 0.01626595
## ... Procrustes: rmse 0.0001961059 max resid 0.0005855214
## ... Similar to previous best
## Run 348 stress 0.01626621
## ... Procrustes: rmse 0.0003018193 max resid 0.0009080104
## ... Similar to previous best
## Run 349 stress 0.01626599
## ... Procrustes: rmse 0.0002243693 max resid 0.0006701999
## ... Similar to previous best
## Run 350 stress 0.01626602
## ... Procrustes: rmse 0.0002043024 max resid 0.0006134178
## ... Similar to previous best
## Run 351 stress 0.01626613
## ... Procrustes: rmse 0.0002613114 max resid 0.0007852959
## ... Similar to previous best
## Run 352 stress 0.01626599
## ... Procrustes: rmse 0.0001849522 max resid 0.0005553576
## ... Similar to previous best
## Run 353 stress 0.01626597
## ... Procrustes: rmse 0.0002025417 max resid 0.0006046031
## ... Similar to previous best
## Run 354 stress 0.01626639
## ... Procrustes: rmse 0.0003592399 max resid 0.001081314
## ... Similar to previous best
## Run 355 stress 0.01626637
## ... Procrustes: rmse 0.0003543425 max resid 0.001066603
## ... Similar to previous best
## Run 356 stress 0.01626612
## ... Procrustes: rmse 0.0002870946 max resid 0.000858007
## ... Similar to previous best
## Run 357 stress 0.01626616
## ... Procrustes: rmse 0.0002701111 max resid 0.0008117816
## ... Similar to previous best
## Run 358 stress 0.01626604
## ... Procrustes: rmse 0.0002528999 max resid 0.0007556743
## ... Similar to previous best
## Run 359 stress 0.01626615
## ... Procrustes: rmse 0.0002929112 max resid 0.0008752796
## ... Similar to previous best
## Run 360 stress 0.01626615
## ... Procrustes: rmse 0.0002993699 max resid 0.0008947496
## ... Similar to previous best
## Run 361 stress 0.016266
## ... Procrustes: rmse 0.0001918005 max resid 0.0005759214
## ... Similar to previous best
## Run 362 stress 0.01626608
## ... Procrustes: rmse 0.0002706385 max resid 0.0008088161
## ... Similar to previous best
## Run 363 stress 0.01626594
## ... Procrustes: rmse 0.0001551497 max resid 0.0004660477
## ... Similar to previous best
## Run 364 stress 0.01626603
## ... Procrustes: rmse 0.0002094868 max resid 0.0006289854
## ... Similar to previous best
## Run 365 stress 0.01626623
## ... Procrustes: rmse 0.0003078737 max resid 0.0009263239
## ... Similar to previous best
## Run 366 stress 0.01626636
## ... Procrustes: rmse 0.0003574325 max resid 0.001076068
## ... Similar to previous best
## Run 367 stress 0.01626585
## ... Procrustes: rmse 5.98743e-05 max resid 0.0001803665
## ... Similar to previous best
## Run 368 stress 0.01626593
## ... Procrustes: rmse 0.0001744273 max resid 0.0005204405
## ... Similar to previous best
## Run 369 stress 0.016266
## ... Procrustes: rmse 0.000227022 max resid 0.0006781506
## ... Similar to previous best
## Run 370 stress 0.01626623
## ... Procrustes: rmse 0.0003256711 max resid 0.000973218
## ... Similar to previous best
## Run 371 stress 0.01626597
## ... Procrustes: rmse 0.0002028064 max resid 0.0006054585
## ... Similar to previous best
## Run 372 stress 0.0162661
## ... Procrustes: rmse 0.0002827467 max resid 0.0008451363
## ... Similar to previous best
## Run 373 stress 0.01626585
## ... Procrustes: rmse 8.676877e-05 max resid 0.0002577358
## ... Similar to previous best
## Run 374 stress 0.01626632
## ... Procrustes: rmse 0.0003403124 max resid 0.001024287
## ... Similar to previous best
## Run 375 stress 0.01626606
## ... Procrustes: rmse 0.0002630175 max resid 0.00078598
## ... Similar to previous best
## Run 376 stress 0.3679686
## Run 377 stress 0.0162661
## ... Procrustes: rmse 0.0002468333 max resid 0.0007413392
## ... Similar to previous best
## Run 378 stress 0.01626612
## ... Procrustes: rmse 0.0002565383 max resid 0.0007708478
## ... Similar to previous best
## Run 379 stress 0.01626613
## ... Procrustes: rmse 0.00029959 max resid 0.0008956084
## ... Similar to previous best
## Run 380 stress 0.01626622
## ... Procrustes: rmse 0.0003030332 max resid 0.000911632
## ... Similar to previous best
## Run 381 stress 0.01626597
## ... Procrustes: rmse 0.0002046773 max resid 0.0006133038
## ... Similar to previous best
## Run 382 stress 0.01626621
## ... Procrustes: rmse 0.0003018103 max resid 0.000907976
## ... Similar to previous best
## Run 383 stress 0.01626616
## ... Procrustes: rmse 0.0002764402 max resid 0.0008311093
## ... Similar to previous best
## Run 384 stress 0.01626595
## ... Procrustes: rmse 0.000159024 max resid 0.0004776751
## ... Similar to previous best
## Run 385 stress 0.01626617
## ... Procrustes: rmse 0.0002759707 max resid 0.000829552
## ... Similar to previous best
## Run 386 stress 0.01626599
## ... Procrustes: rmse 0.0001874609 max resid 0.0005628722
## ... Similar to previous best
## Run 387 stress 0.01626624
## ... Procrustes: rmse 0.0002920494 max resid 0.0008778456
## ... Similar to previous best
## Run 388 stress 0.01626625
## ... Procrustes: rmse 0.0003174196 max resid 0.0009552276
## ... Similar to previous best
## Run 389 stress 0.01626623
## ... Procrustes: rmse 0.0003059171 max resid 0.0009203282
## ... Similar to previous best
## Run 390 stress 0.01626613
## ... Procrustes: rmse 0.0002977997 max resid 0.0008901582
## ... Similar to previous best
## Run 391 stress 0.01626613
## ... Procrustes: rmse 0.0002984303 max resid 0.0008921092
## ... Similar to previous best
## Run 392 stress 0.01626632
## ... Procrustes: rmse 0.0003455245 max resid 0.001040247
## ... Similar to previous best
## Run 393 stress 0.01626603
## ... Procrustes: rmse 0.0002443631 max resid 0.000730119
## ... Similar to previous best
## Run 394 stress 0.01626616
## ... Procrustes: rmse 0.0002784956 max resid 0.000837385
## ... Similar to previous best
## Run 395 stress 0.01626591
## ... Procrustes: rmse 0.000123718 max resid 0.0003719267
## ... Similar to previous best
## Run 396 stress 0.01626616
## ... Procrustes: rmse 0.0002685822 max resid 0.0008070824
## ... Similar to previous best
## Run 397 stress 0.01626594
## ... Procrustes: rmse 0.0001908959 max resid 0.0005698842
## ... Similar to previous best
## Run 398 stress 0.01626632
## ... Procrustes: rmse 0.0003345371 max resid 0.001006721
## ... Similar to previous best
## Run 399 stress 0.01626597
## ... Procrustes: rmse 0.0001678293 max resid 0.0005038029
## ... Similar to previous best
## Run 400 stress 0.01626617
## ... Procrustes: rmse 0.0003169978 max resid 0.0009477734
## ... Similar to previous best
## Run 401 stress 0.01626609
## ... Procrustes: rmse 0.0002411063 max resid 0.0007240507
## ... Similar to previous best
## Run 402 stress 0.01626611
## ... Procrustes: rmse 0.0002875421 max resid 0.0008595008
## ... Similar to previous best
## Run 403 stress 0.01626629
## ... Procrustes: rmse 0.0003234149 max resid 0.0009731276
## ... Similar to previous best
## Run 404 stress 0.01626604
## ... Procrustes: rmse 0.0002093418 max resid 0.0006283139
## ... Similar to previous best
## Run 405 stress 0.01626602
## ... Procrustes: rmse 0.00023765 max resid 0.0007099938
## ... Similar to previous best
## Run 406 stress 0.01626627
## ... Procrustes: rmse 0.0003121084 max resid 0.0009388149
## ... Similar to previous best
## Run 407 stress 0.01626611
## ... Procrustes: rmse 0.0002787865 max resid 0.000833101
## ... Similar to previous best
## Run 408 stress 0.0162662
## ... Procrustes: rmse 0.0002928209 max resid 0.0008806816
## ... Similar to previous best
## Run 409 stress 0.01626606
## ... Procrustes: rmse 0.0002284184 max resid 0.0006858923
## ... Similar to previous best
## Run 410 stress 0.01626584
## ... Procrustes: rmse 2.731183e-05 max resid 7.853567e-05
## ... Similar to previous best
## Run 411 stress 0.01626611
## ... Procrustes: rmse 0.0002489606 max resid 0.0007476699
## ... Similar to previous best
## Run 412 stress 0.01626631
## ... Procrustes: rmse 0.000334365 max resid 0.001006306
## ... Similar to previous best
## Run 413 stress 0.0162662
## ... Procrustes: rmse 0.0003249704 max resid 0.0009716301
## ... Similar to previous best
## Run 414 stress 0.016266
## ... Procrustes: rmse 0.0002212795 max resid 0.0006606606
## ... Similar to previous best
## Run 415 stress 0.01626601
## ... Procrustes: rmse 0.0002005768 max resid 0.0006022426
## ... Similar to previous best
## Run 416 stress 0.01626621
## ... Procrustes: rmse 0.0002891242 max resid 0.0008692422
## ... Similar to previous best
## Run 417 stress 0.01626604
## ... Procrustes: rmse 0.0002540581 max resid 0.00075924
## ... Similar to previous best
## Run 418 stress 0.01626617
## ... Procrustes: rmse 0.00028262 max resid 0.0008498752
## ... Similar to previous best
## Run 419 stress 0.01626612
## ... Procrustes: rmse 0.0002570817 max resid 0.0007724954
## ... Similar to previous best
## Run 420 stress 0.01626604
## ... Procrustes: rmse 0.0002179549 max resid 0.0006518125
## ... Similar to previous best
## Run 421 stress 0.01626612
## ... Procrustes: rmse 0.0002552236 max resid 0.000766804
## ... Similar to previous best
## Run 422 stress 0.016266
## ... Procrustes: rmse 0.000230478 max resid 0.0006887144
## ... Similar to previous best
## Run 423 stress 0.01626612
## ... Procrustes: rmse 0.0002542089 max resid 0.0007635724
## ... Similar to previous best
## Run 424 stress 0.01626607
## ... Procrustes: rmse 0.0002676105 max resid 0.0007997918
## ... Similar to previous best
## Run 425 stress 0.0162663
## ... Procrustes: rmse 0.00033736 max resid 0.001015553
## ... Similar to previous best
## Run 426 stress 0.01626593
## ... Procrustes: rmse 0.0001430835 max resid 0.0004299026
## ... Similar to previous best
## Run 427 stress 0.01626593
## ... Procrustes: rmse 0.0001456396 max resid 0.0004375978
## ... Similar to previous best
## Run 428 stress 0.01626617
## ... Procrustes: rmse 0.0003148097 max resid 0.000941204
## ... Similar to previous best
## Run 429 stress 0.0162661
## ... Procrustes: rmse 0.0002410001 max resid 0.0007234148
## ... Similar to previous best
## Run 430 stress 0.01626626
## ... Procrustes: rmse 0.0003201621 max resid 0.0009635235
## ... Similar to previous best
## Run 431 stress 0.01626599
## ... Procrustes: rmse 0.0001900723 max resid 0.0005707577
## ... Similar to previous best
## Run 432 stress 0.01626621
## ... Procrustes: rmse 0.0002984754 max resid 0.0008978871
## ... Similar to previous best
## Run 433 stress 0.01626596
## ... Procrustes: rmse 0.0001661594 max resid 0.0004990708
## ... Similar to previous best
## Run 434 stress 0.01626598
## ... Procrustes: rmse 0.0002123889 max resid 0.0006342649
## ... Similar to previous best
## Run 435 stress 0.01626625
## ... Procrustes: rmse 0.0003176553 max resid 0.0009559403
## ... Similar to previous best
## Run 436 stress 0.01626606
## ... Procrustes: rmse 0.0002308853 max resid 0.0006933135
## ... Similar to previous best
## Run 437 stress 0.01626602
## ... Procrustes: rmse 0.0002427053 max resid 0.000725109
## ... Similar to previous best
## Run 438 stress 0.01626599
## ... Procrustes: rmse 0.0002214415 max resid 0.0006614209
## ... Similar to previous best
## Run 439 stress 0.01626602
## ... Procrustes: rmse 0.0002079193 max resid 0.0006242794
## ... Similar to previous best
## Run 440 stress 0.01626595
## ... Procrustes: rmse 0.0001933867 max resid 0.0005773456
## ... Similar to previous best
## Run 441 stress 0.01626632
## ... Procrustes: rmse 0.0003427509 max resid 0.00103181
## ... Similar to previous best
## Run 442 stress 0.01626599
## ... Procrustes: rmse 0.0002242889 max resid 0.0006699744
## ... Similar to previous best
## Run 443 stress 0.0162662
## ... Procrustes: rmse 0.0002971105 max resid 0.0008937576
## ... Similar to previous best
## Run 444 stress 0.01626615
## ... Procrustes: rmse 0.0002742182 max resid 0.0008244273
## ... Similar to previous best
## Run 445 stress 0.01626604
## ... Procrustes: rmse 0.0002200384 max resid 0.0006606526
## ... Similar to previous best
## Run 446 stress 0.0162662
## ... Procrustes: rmse 0.0002838351 max resid 0.000853253
## ... Similar to previous best
## Run 447 stress 0.0162661
## ... Procrustes: rmse 0.0002513654 max resid 0.0007551631
## ... Similar to previous best
## Run 448 stress 0.01626607
## ... Procrustes: rmse 0.000232473 max resid 0.0006981058
## ... Similar to previous best
## Run 449 stress 0.01626623
## ... Procrustes: rmse 0.0003285232 max resid 0.0009820132
## ... Similar to previous best
## Run 450 stress 0.01626623
## ... Procrustes: rmse 0.0003046188 max resid 0.0009163644
## ... Similar to previous best
## Run 451 stress 0.01626606
## ... Procrustes: rmse 0.0002265925 max resid 0.0006803748
## ... Similar to previous best
## Run 452 stress 0.01626606
## ... Procrustes: rmse 0.0002626076 max resid 0.0007847467
## ... Similar to previous best
## Run 453 stress 0.01626613
## ... Procrustes: rmse 0.000260336 max resid 0.0007822237
## ... Similar to previous best
## Run 454 stress 0.01626622
## ... Procrustes: rmse 0.0003025136 max resid 0.0009100393
## ... Similar to previous best
## Run 455 stress 0.01626607
## ... Procrustes: rmse 0.0002278961 max resid 0.0006840628
## ... Similar to previous best
## Run 456 stress 0.01626603
## ... Procrustes: rmse 0.0002094628 max resid 0.0006289149
## ... Similar to previous best
## Run 457 stress 0.01626605
## ... Procrustes: rmse 0.0002569668 max resid 0.000767512
## ... Similar to previous best
## Run 458 stress 0.01626624
## ... Procrustes: rmse 0.0003061292 max resid 0.0009207981
## ... Similar to previous best
## Run 459 stress 0.01626613
## ... Procrustes: rmse 0.0002579341 max resid 0.0007749597
## ... Similar to previous best
## Run 460 stress 0.016266
## ... Procrustes: rmse 0.0001910598 max resid 0.0005737068
## ... Similar to previous best
## Run 461 stress 0.01626653
## ... Procrustes: rmse 0.0004157448 max resid 0.001252188
## ... Similar to previous best
## Run 462 stress 0.01626609
## ... Procrustes: rmse 0.0002400749 max resid 0.000720921
## ... Similar to previous best
## Run 463 stress 0.01626598
## ... Procrustes: rmse 0.0002160589 max resid 0.00064525
## ... Similar to previous best
## Run 464 stress 0.01626595
## ... Procrustes: rmse 0.0001969945 max resid 0.0005881469
## ... Similar to previous best
## Run 465 stress 0.01626589
## ... Procrustes: rmse 0.0001100467 max resid 0.0003309038
## ... Similar to previous best
## Run 466 stress 0.01626621
## ... Procrustes: rmse 0.0003208548 max resid 0.0009588948
## ... Similar to previous best
## Run 467 stress 0.01626604
## ... Procrustes: rmse 0.000249796 max resid 0.0007464278
## ... Similar to previous best
## Run 468 stress 0.01626631
## ... Procrustes: rmse 0.000323656 max resid 0.0009736123
## ... Similar to previous best
## Run 469 stress 0.01626597
## ... Procrustes: rmse 0.0001717155 max resid 0.0005156812
## ... Similar to previous best
## Run 470 stress 0.01626607
## ... Procrustes: rmse 0.0002263405 max resid 0.0006795159
## ... Similar to previous best
## Run 471 stress 0.016266
## ... Procrustes: rmse 0.0002304989 max resid 0.0006885436
## ... Similar to previous best
## Run 472 stress 0.01626592
## ... Procrustes: rmse 0.0001386193 max resid 0.0004165457
## ... Similar to previous best
## Run 473 stress 0.01626597
## ... Procrustes: rmse 0.0002123943 max resid 0.0006343194
## ... Similar to previous best
## Run 474 stress 0.01626612
## ... Procrustes: rmse 0.0002599631 max resid 0.0007812292
## ... Similar to previous best
## Run 475 stress 0.01626617
## ... Procrustes: rmse 0.0002595421 max resid 0.0007792472
## ... Similar to previous best
## Run 476 stress 0.01626604
## ... Procrustes: rmse 0.0002531154 max resid 0.0007563295
## ... Similar to previous best
## Run 477 stress 0.01626606
## ... Procrustes: rmse 0.0002262679 max resid 0.0006794164
## ... Similar to previous best
## Run 478 stress 0.01626618
## ... Procrustes: rmse 0.0003072802 max resid 0.0009182878
## ... Similar to previous best
## Run 479 stress 0.01626611
## ... Procrustes: rmse 0.0002478088 max resid 0.0007441482
## ... Similar to previous best
## Run 480 stress 0.01626624
## ... Procrustes: rmse 0.0003136341 max resid 0.0009437519
## ... Similar to previous best
## Run 481 stress 0.01626619
## ... Procrustes: rmse 0.0002812021 max resid 0.0008453561
## ... Similar to previous best
## Run 482 stress 0.0162662
## ... Procrustes: rmse 0.0002951478 max resid 0.0008878064
## ... Similar to previous best
## Run 483 stress 0.01626597
## ... Procrustes: rmse 0.0001733953 max resid 0.0005207454
## ... Similar to previous best
## Run 484 stress 0.01626627
## ... Procrustes: rmse 0.0003005647 max resid 0.0009034613
## ... Similar to previous best
## Run 485 stress 0.01626626
## ... Procrustes: rmse 0.0003209547 max resid 0.0009659113
## ... Similar to previous best
## Run 486 stress 0.01626611
## ... Procrustes: rmse 0.0002867895 max resid 0.0008572226
## ... Similar to previous best
## Run 487 stress 0.01626607
## ... Procrustes: rmse 0.0002680785 max resid 0.0008011457
## ... Similar to previous best
## Run 488 stress 0.01626618
## ... Procrustes: rmse 0.0002664559 max resid 0.0008002631
## ... Similar to previous best
## Run 489 stress 0.01626603
## ... Procrustes: rmse 0.0002033868 max resid 0.0006104608
## ... Similar to previous best
## Run 490 stress 0.01626609
## ... Procrustes: rmse 0.0002804705 max resid 0.0008383095
## ... Similar to previous best
## Run 491 stress 0.01626615
## ... Procrustes: rmse 0.000273602 max resid 0.0008225544
## ... Similar to previous best
## Run 492 stress 0.016266
## ... Procrustes: rmse 0.0001965246 max resid 0.0005900827
## ... Similar to previous best
## Run 493 stress 0.01626629
## ... Procrustes: rmse 0.000327625 max resid 0.0009859183
## ... Similar to previous best
## Run 494 stress 0.01626609
## ... Procrustes: rmse 0.0002789571 max resid 0.0008337824
## ... Similar to previous best
## Run 495 stress 0.01626613
## ... Procrustes: rmse 0.0002638958 max resid 0.0007931406
## ... Similar to previous best
## Run 496 stress 0.01626627
## ... Procrustes: rmse 0.0003239083 max resid 0.000974859
## ... Similar to previous best
## Run 497 stress 0.01626614
## ... Procrustes: rmse 0.0002675563 max resid 0.0008042422
## ... Similar to previous best
## Run 498 stress 0.01626596
## ... Procrustes: rmse 0.0001649051 max resid 0.0004952548
## ... Similar to previous best
## Run 499 stress 0.01626623
## ... Procrustes: rmse 0.0003009152 max resid 0.0009050703
## ... Similar to previous best
## Run 500 stress 0.01626601
## ... Procrustes: rmse 0.0002363134 max resid 0.0007059675
## ... Similar to previous best
## *** Best solution repeated 261 times# Mixed and stratified lakes
envbms_NMDS <- metaMDS(envbms_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.031621
## Run 1 stress 0.1187658
## Run 2 stress 0.031621
## ... New best solution
## ... Procrustes: rmse 1.715717e-05 max resid 3.95926e-05
## ... Similar to previous best
## Run 3 stress 0.03162101
## ... Procrustes: rmse 3.746861e-05 max resid 6.945514e-05
## ... Similar to previous best
## Run 4 stress 0.03162102
## ... Procrustes: rmse 4.800662e-05 max resid 0.0001131642
## ... Similar to previous best
## Run 5 stress 0.03162101
## ... Procrustes: rmse 3.733788e-05 max resid 8.736392e-05
## ... Similar to previous best
## Run 6 stress 0.03162104
## ... Procrustes: rmse 6.682194e-05 max resid 0.0001085359
## ... Similar to previous best
## Run 7 stress 0.03162101
## ... Procrustes: rmse 3.031957e-05 max resid 7.390382e-05
## ... Similar to previous best
## Run 8 stress 0.03162103
## ... Procrustes: rmse 6.281873e-05 max resid 0.0001413046
## ... Similar to previous best
## Run 9 stress 0.03162101
## ... Procrustes: rmse 3.214123e-05 max resid 7.268738e-05
## ... Similar to previous best
## Run 10 stress 0.031621
## ... Procrustes: rmse 1.386382e-05 max resid 3.41167e-05
## ... Similar to previous best
## Run 11 stress 0.031621
## ... Procrustes: rmse 8.209023e-06 max resid 1.798216e-05
## ... Similar to previous best
## Run 12 stress 0.031621
## ... Procrustes: rmse 7.768285e-06 max resid 1.663776e-05
## ... Similar to previous best
## Run 13 stress 0.1187658
## Run 14 stress 0.1187662
## Run 15 stress 0.03162103
## ... Procrustes: rmse 6.317207e-05 max resid 0.0001268166
## ... Similar to previous best
## Run 16 stress 0.03162102
## ... Procrustes: rmse 5.360455e-05 max resid 0.0001319372
## ... Similar to previous best
## Run 17 stress 0.03162101
## ... Procrustes: rmse 2.505345e-05 max resid 5.098991e-05
## ... Similar to previous best
## Run 18 stress 0.1191519
## Run 19 stress 0.031621
## ... Procrustes: rmse 2.153326e-05 max resid 4.201094e-05
## ... Similar to previous best
## Run 20 stress 0.03162102
## ... Procrustes: rmse 5.554792e-05 max resid 0.0001311687
## ... Similar to previous best
## Run 21 stress 0.031621
## ... New best solution
## ... Procrustes: rmse 1.573815e-06 max resid 2.92898e-06
## ... Similar to previous best
## Run 22 stress 0.119152
## Run 23 stress 0.031621
## ... Procrustes: rmse 1.366751e-05 max resid 2.088913e-05
## ... Similar to previous best
## Run 24 stress 0.031621
## ... Procrustes: rmse 2.011321e-05 max resid 5.062525e-05
## ... Similar to previous best
## Run 25 stress 0.031621
## ... Procrustes: rmse 9.49417e-06 max resid 2.434503e-05
## ... Similar to previous best
## Run 26 stress 0.031621
## ... Procrustes: rmse 3.833948e-06 max resid 7.711544e-06
## ... Similar to previous best
## Run 27 stress 0.03162102
## ... Procrustes: rmse 5.350631e-05 max resid 0.0001235133
## ... Similar to previous best
## Run 28 stress 0.03162103
## ... Procrustes: rmse 6.048417e-05 max resid 0.0001186502
## ... Similar to previous best
## Run 29 stress 0.031621
## ... Procrustes: rmse 7.241582e-06 max resid 1.429784e-05
## ... Similar to previous best
## Run 30 stress 0.031621
## ... Procrustes: rmse 1.740575e-05 max resid 3.532627e-05
## ... Similar to previous best
## Run 31 stress 0.03162104
## ... Procrustes: rmse 5.637463e-05 max resid 8.942713e-05
## ... Similar to previous best
## Run 32 stress 0.031621
## ... Procrustes: rmse 6.684473e-06 max resid 1.189741e-05
## ... Similar to previous best
## Run 33 stress 0.031621
## ... Procrustes: rmse 1.347132e-05 max resid 3.060304e-05
## ... Similar to previous best
## Run 34 stress 0.031621
## ... Procrustes: rmse 1.623217e-05 max resid 3.8194e-05
## ... Similar to previous best
## Run 35 stress 0.031621
## ... Procrustes: rmse 2.923173e-06 max resid 5.990127e-06
## ... Similar to previous best
## Run 36 stress 0.03162102
## ... Procrustes: rmse 4.394799e-05 max resid 8.687809e-05
## ... Similar to previous best
## Run 37 stress 0.03162101
## ... Procrustes: rmse 3.065392e-05 max resid 6.505489e-05
## ... Similar to previous best
## Run 38 stress 0.031621
## ... Procrustes: rmse 5.917155e-06 max resid 1.482324e-05
## ... Similar to previous best
## Run 39 stress 0.03162101
## ... Procrustes: rmse 3.33715e-05 max resid 5.248789e-05
## ... Similar to previous best
## Run 40 stress 0.031621
## ... Procrustes: rmse 6.584451e-06 max resid 1.329185e-05
## ... Similar to previous best
## Run 41 stress 0.031621
## ... Procrustes: rmse 4.934728e-06 max resid 1.014561e-05
## ... Similar to previous best
## Run 42 stress 0.031621
## ... Procrustes: rmse 1.087551e-05 max resid 2.453587e-05
## ... Similar to previous best
## Run 43 stress 0.031621
## ... Procrustes: rmse 9.438673e-06 max resid 1.749351e-05
## ... Similar to previous best
## Run 44 stress 0.031621
## ... Procrustes: rmse 3.538001e-06 max resid 5.554812e-06
## ... Similar to previous best
## Run 45 stress 0.031621
## ... Procrustes: rmse 5.65633e-06 max resid 1.517765e-05
## ... Similar to previous best
## Run 46 stress 0.03162102
## ... Procrustes: rmse 4.974728e-05 max resid 9.851207e-05
## ... Similar to previous best
## Run 47 stress 0.03162103
## ... Procrustes: rmse 6.00203e-05 max resid 0.0001393186
## ... Similar to previous best
## Run 48 stress 0.031621
## ... Procrustes: rmse 2.810997e-05 max resid 6.643832e-05
## ... Similar to previous best
## Run 49 stress 0.031621
## ... Procrustes: rmse 2.667217e-05 max resid 6.217701e-05
## ... Similar to previous best
## Run 50 stress 0.031621
## ... Procrustes: rmse 8.223069e-06 max resid 1.28457e-05
## ... Similar to previous best
## Run 51 stress 0.03162101
## ... Procrustes: rmse 3.027586e-05 max resid 7.304136e-05
## ... Similar to previous best
## Run 52 stress 0.03162101
## ... Procrustes: rmse 3.023739e-05 max resid 6.450783e-05
## ... Similar to previous best
## Run 53 stress 0.031621
## ... Procrustes: rmse 2.405892e-05 max resid 5.818196e-05
## ... Similar to previous best
## Run 54 stress 0.031621
## ... Procrustes: rmse 2.134221e-05 max resid 4.436934e-05
## ... Similar to previous best
## Run 55 stress 0.031621
## ... Procrustes: rmse 1.475371e-05 max resid 3.436074e-05
## ... Similar to previous best
## Run 56 stress 0.03162101
## ... Procrustes: rmse 2.874103e-05 max resid 6.592731e-05
## ... Similar to previous best
## Run 57 stress 0.03162101
## ... Procrustes: rmse 3.03134e-05 max resid 6.26561e-05
## ... Similar to previous best
## Run 58 stress 0.03162102
## ... Procrustes: rmse 4.924991e-05 max resid 0.0001194225
## ... Similar to previous best
## Run 59 stress 0.031621
## ... Procrustes: rmse 2.026594e-05 max resid 3.654948e-05
## ... Similar to previous best
## Run 60 stress 0.031621
## ... Procrustes: rmse 1.400022e-05 max resid 3.238384e-05
## ... Similar to previous best
## Run 61 stress 0.03162102
## ... Procrustes: rmse 5.39203e-05 max resid 0.0001257077
## ... Similar to previous best
## Run 62 stress 0.031621
## ... Procrustes: rmse 9.354766e-06 max resid 2.323931e-05
## ... Similar to previous best
## Run 63 stress 0.03162102
## ... Procrustes: rmse 4.48508e-05 max resid 7.76759e-05
## ... Similar to previous best
## Run 64 stress 0.03162101
## ... Procrustes: rmse 3.962283e-05 max resid 9.707933e-05
## ... Similar to previous best
## Run 65 stress 0.03162101
## ... Procrustes: rmse 3.488517e-05 max resid 8.167636e-05
## ... Similar to previous best
## Run 66 stress 0.03162102
## ... Procrustes: rmse 4.438322e-05 max resid 0.0001028939
## ... Similar to previous best
## Run 67 stress 0.031621
## ... Procrustes: rmse 7.546157e-06 max resid 1.477567e-05
## ... Similar to previous best
## Run 68 stress 0.031621
## ... Procrustes: rmse 1.115161e-05 max resid 2.72023e-05
## ... Similar to previous best
## Run 69 stress 0.1187659
## Run 70 stress 0.03162101
## ... Procrustes: rmse 3.879685e-05 max resid 8.79052e-05
## ... Similar to previous best
## Run 71 stress 0.031621
## ... Procrustes: rmse 6.150312e-06 max resid 1.098077e-05
## ... Similar to previous best
## Run 72 stress 0.03162102
## ... Procrustes: rmse 4.153665e-05 max resid 9.442041e-05
## ... Similar to previous best
## Run 73 stress 0.031621
## ... Procrustes: rmse 1.309318e-05 max resid 2.8724e-05
## ... Similar to previous best
## Run 74 stress 0.031621
## ... Procrustes: rmse 1.735697e-05 max resid 4.011072e-05
## ... Similar to previous best
## Run 75 stress 0.031621
## ... Procrustes: rmse 2.237369e-05 max resid 4.606302e-05
## ... Similar to previous best
## Run 76 stress 0.03162102
## ... Procrustes: rmse 5.533315e-05 max resid 0.0001287051
## ... Similar to previous best
## Run 77 stress 0.031621
## ... Procrustes: rmse 1.789022e-05 max resid 3.632558e-05
## ... Similar to previous best
## Run 78 stress 0.031621
## ... Procrustes: rmse 1.420864e-05 max resid 2.336415e-05
## ... Similar to previous best
## Run 79 stress 0.031621
## ... Procrustes: rmse 2.165338e-05 max resid 4.867376e-05
## ... Similar to previous best
## Run 80 stress 0.331103
## Run 81 stress 0.03162103
## ... Procrustes: rmse 5.865909e-05 max resid 0.0001362545
## ... Similar to previous best
## Run 82 stress 0.03162101
## ... Procrustes: rmse 3.242425e-05 max resid 7.32478e-05
## ... Similar to previous best
## Run 83 stress 0.03162102
## ... Procrustes: rmse 5.357454e-05 max resid 0.0001059641
## ... Similar to previous best
## Run 84 stress 0.03162103
## ... Procrustes: rmse 6.544207e-05 max resid 0.0001315035
## ... Similar to previous best
## Run 85 stress 0.03162103
## ... Procrustes: rmse 5.570776e-05 max resid 0.0001291357
## ... Similar to previous best
## Run 86 stress 0.031621
## ... Procrustes: rmse 2.345467e-06 max resid 5.623904e-06
## ... Similar to previous best
## Run 87 stress 0.031621
## ... Procrustes: rmse 2.297302e-05 max resid 5.37619e-05
## ... Similar to previous best
## Run 88 stress 0.031621
## ... Procrustes: rmse 1.833879e-05 max resid 3.276622e-05
## ... Similar to previous best
## Run 89 stress 0.031621
## ... Procrustes: rmse 7.368877e-06 max resid 1.455656e-05
## ... Similar to previous best
## Run 90 stress 0.031621
## ... Procrustes: rmse 1.050287e-05 max resid 2.454955e-05
## ... Similar to previous best
## Run 91 stress 0.03162101
## ... Procrustes: rmse 3.641432e-05 max resid 9.102243e-05
## ... Similar to previous best
## Run 92 stress 0.03162101
## ... Procrustes: rmse 9.216754e-06 max resid 1.810218e-05
## ... Similar to previous best
## Run 93 stress 0.031621
## ... Procrustes: rmse 1.093834e-05 max resid 2.585912e-05
## ... Similar to previous best
## Run 94 stress 0.031621
## ... Procrustes: rmse 1.430211e-05 max resid 3.019644e-05
## ... Similar to previous best
## Run 95 stress 0.03162101
## ... Procrustes: rmse 2.076216e-05 max resid 4.327204e-05
## ... Similar to previous best
## Run 96 stress 0.03162102
## ... Procrustes: rmse 4.524195e-05 max resid 8.110196e-05
## ... Similar to previous best
## Run 97 stress 0.1187658
## Run 98 stress 0.031621
## ... Procrustes: rmse 7.596743e-06 max resid 1.336103e-05
## ... Similar to previous best
## Run 99 stress 0.031621
## ... Procrustes: rmse 1.915517e-05 max resid 4.794095e-05
## ... Similar to previous best
## Run 100 stress 0.03162101
## ... Procrustes: rmse 3.412531e-05 max resid 8.184448e-05
## ... Similar to previous best
## Run 101 stress 0.03162101
## ... Procrustes: rmse 1.340025e-05 max resid 2.872128e-05
## ... Similar to previous best
## Run 102 stress 0.031621
## ... Procrustes: rmse 5.18232e-06 max resid 1.1202e-05
## ... Similar to previous best
## Run 103 stress 0.03162102
## ... Procrustes: rmse 5.595985e-05 max resid 0.0001298717
## ... Similar to previous best
## Run 104 stress 0.03162101
## ... Procrustes: rmse 9.152729e-06 max resid 1.850895e-05
## ... Similar to previous best
## Run 105 stress 0.03162102
## ... Procrustes: rmse 4.549939e-05 max resid 9.080049e-05
## ... Similar to previous best
## Run 106 stress 0.031621
## ... Procrustes: rmse 7.989219e-06 max resid 2.096244e-05
## ... Similar to previous best
## Run 107 stress 0.031621
## ... Procrustes: rmse 1.352692e-05 max resid 3.292043e-05
## ... Similar to previous best
## Run 108 stress 0.03162103
## ... Procrustes: rmse 6.26036e-05 max resid 0.000158387
## ... Similar to previous best
## Run 109 stress 0.03162102
## ... Procrustes: rmse 4.974062e-05 max resid 0.0001153347
## ... Similar to previous best
## Run 110 stress 0.03162101
## ... Procrustes: rmse 3.078526e-05 max resid 4.73982e-05
## ... Similar to previous best
## Run 111 stress 0.03162101
## ... Procrustes: rmse 2.876444e-05 max resid 6.339524e-05
## ... Similar to previous best
## Run 112 stress 0.03162101
## ... Procrustes: rmse 4.144642e-05 max resid 9.549911e-05
## ... Similar to previous best
## Run 113 stress 0.03162101
## ... Procrustes: rmse 2.957666e-05 max resid 5.717188e-05
## ... Similar to previous best
## Run 114 stress 0.031621
## ... Procrustes: rmse 1.403764e-05 max resid 3.076401e-05
## ... Similar to previous best
## Run 115 stress 0.03162102
## ... Procrustes: rmse 4.99249e-05 max resid 0.0001160312
## ... Similar to previous best
## Run 116 stress 0.031621
## ... Procrustes: rmse 4.472955e-06 max resid 1.110189e-05
## ... Similar to previous best
## Run 117 stress 0.1191518
## Run 118 stress 0.03162101
## ... Procrustes: rmse 2.995917e-05 max resid 6.356499e-05
## ... Similar to previous best
## Run 119 stress 0.03162101
## ... Procrustes: rmse 3.373726e-05 max resid 6.934185e-05
## ... Similar to previous best
## Run 120 stress 0.031621
## ... Procrustes: rmse 7.750583e-06 max resid 1.886098e-05
## ... Similar to previous best
## Run 121 stress 0.031621
## ... Procrustes: rmse 6.927376e-06 max resid 1.531129e-05
## ... Similar to previous best
## Run 122 stress 0.03162101
## ... Procrustes: rmse 3.121301e-05 max resid 7.69183e-05
## ... Similar to previous best
## Run 123 stress 0.03162101
## ... Procrustes: rmse 3.850508e-05 max resid 7.592344e-05
## ... Similar to previous best
## Run 124 stress 0.031621
## ... Procrustes: rmse 1.107713e-05 max resid 2.497485e-05
## ... Similar to previous best
## Run 125 stress 0.031621
## ... Procrustes: rmse 5.520439e-06 max resid 9.629567e-06
## ... Similar to previous best
## Run 126 stress 0.03162102
## ... Procrustes: rmse 3.614311e-05 max resid 7.844359e-05
## ... Similar to previous best
## Run 127 stress 0.031621
## ... Procrustes: rmse 7.769353e-06 max resid 1.551489e-05
## ... Similar to previous best
## Run 128 stress 0.031621
## ... Procrustes: rmse 9.743356e-06 max resid 2.382218e-05
## ... Similar to previous best
## Run 129 stress 0.03162101
## ... Procrustes: rmse 3.159682e-05 max resid 6.109342e-05
## ... Similar to previous best
## Run 130 stress 0.031621
## ... Procrustes: rmse 1.76976e-05 max resid 2.778969e-05
## ... Similar to previous best
## Run 131 stress 0.031621
## ... Procrustes: rmse 7.73637e-06 max resid 1.781564e-05
## ... Similar to previous best
## Run 132 stress 0.031621
## ... Procrustes: rmse 8.23815e-06 max resid 1.566929e-05
## ... Similar to previous best
## Run 133 stress 0.03162104
## ... Procrustes: rmse 6.875679e-05 max resid 0.0001577001
## ... Similar to previous best
## Run 134 stress 0.031621
## ... Procrustes: rmse 1.794516e-05 max resid 3.389277e-05
## ... Similar to previous best
## Run 135 stress 0.031621
## ... Procrustes: rmse 1.421666e-05 max resid 2.702999e-05
## ... Similar to previous best
## Run 136 stress 0.03162101
## ... Procrustes: rmse 1.081802e-05 max resid 1.94578e-05
## ... Similar to previous best
## Run 137 stress 0.031621
## ... Procrustes: rmse 6.298568e-06 max resid 1.364333e-05
## ... Similar to previous best
## Run 138 stress 0.031621
## ... Procrustes: rmse 9.794241e-06 max resid 1.689397e-05
## ... Similar to previous best
## Run 139 stress 0.118766
## Run 140 stress 0.03162107
## ... Procrustes: rmse 2.33559e-05 max resid 4.683008e-05
## ... Similar to previous best
## Run 141 stress 0.1191518
## Run 142 stress 0.03162102
## ... Procrustes: rmse 4.642168e-05 max resid 9.297728e-05
## ... Similar to previous best
## Run 143 stress 0.03162101
## ... Procrustes: rmse 4.027597e-05 max resid 9.028633e-05
## ... Similar to previous best
## Run 144 stress 0.03162103
## ... Procrustes: rmse 6.086319e-05 max resid 9.698929e-05
## ... Similar to previous best
## Run 145 stress 0.031621
## ... Procrustes: rmse 3.168376e-06 max resid 7.833392e-06
## ... Similar to previous best
## Run 146 stress 0.03162103
## ... Procrustes: rmse 5.886851e-05 max resid 0.0001348919
## ... Similar to previous best
## Run 147 stress 0.03162102
## ... Procrustes: rmse 4.262636e-05 max resid 8.918378e-05
## ... Similar to previous best
## Run 148 stress 0.031621
## ... Procrustes: rmse 9.359908e-06 max resid 1.602345e-05
## ... Similar to previous best
## Run 149 stress 0.031621
## ... Procrustes: rmse 1.660283e-05 max resid 3.894497e-05
## ... Similar to previous best
## Run 150 stress 0.031621
## ... Procrustes: rmse 4.391161e-06 max resid 7.849465e-06
## ... Similar to previous best
## Run 151 stress 0.1187656
## Run 152 stress 0.031621
## ... Procrustes: rmse 1.923628e-06 max resid 4.151204e-06
## ... Similar to previous best
## Run 153 stress 0.031621
## ... Procrustes: rmse 9.199236e-06 max resid 2.219358e-05
## ... Similar to previous best
## Run 154 stress 0.031621
## ... Procrustes: rmse 1.019099e-05 max resid 2.372017e-05
## ... Similar to previous best
## Run 155 stress 0.031621
## ... Procrustes: rmse 1.338446e-05 max resid 2.933418e-05
## ... Similar to previous best
## Run 156 stress 0.031621
## ... Procrustes: rmse 1.345234e-05 max resid 2.108584e-05
## ... Similar to previous best
## Run 157 stress 0.031621
## ... Procrustes: rmse 1.14578e-05 max resid 2.630854e-05
## ... Similar to previous best
## Run 158 stress 0.03162101
## ... Procrustes: rmse 2.928422e-05 max resid 6.151447e-05
## ... Similar to previous best
## Run 159 stress 0.03162102
## ... Procrustes: rmse 5.008178e-05 max resid 0.0001216181
## ... Similar to previous best
## Run 160 stress 0.031621
## ... Procrustes: rmse 2.094589e-05 max resid 3.288096e-05
## ... Similar to previous best
## Run 161 stress 0.03162103
## ... Procrustes: rmse 5.772548e-05 max resid 0.0001128764
## ... Similar to previous best
## Run 162 stress 0.031621
## ... Procrustes: rmse 2.174838e-05 max resid 5.145058e-05
## ... Similar to previous best
## Run 163 stress 0.03162101
## ... Procrustes: rmse 3.408855e-05 max resid 6.898959e-05
## ... Similar to previous best
## Run 164 stress 0.03162101
## ... Procrustes: rmse 1.640776e-05 max resid 3.221354e-05
## ... Similar to previous best
## Run 165 stress 0.03162102
## ... Procrustes: rmse 4.561745e-05 max resid 9.354134e-05
## ... Similar to previous best
## Run 166 stress 0.1187655
## Run 167 stress 0.1187657
## Run 168 stress 0.031621
## ... Procrustes: rmse 1.331507e-05 max resid 2.792995e-05
## ... Similar to previous best
## Run 169 stress 0.031621
## ... Procrustes: rmse 2.268817e-05 max resid 5.397901e-05
## ... Similar to previous best
## Run 170 stress 0.031621
## ... Procrustes: rmse 7.920248e-06 max resid 1.887575e-05
## ... Similar to previous best
## Run 171 stress 0.031621
## ... Procrustes: rmse 2.00751e-05 max resid 3.659968e-05
## ... Similar to previous best
## Run 172 stress 0.03162102
## ... Procrustes: rmse 5.124602e-05 max resid 0.0001025002
## ... Similar to previous best
## Run 173 stress 0.03162103
## ... Procrustes: rmse 5.85695e-05 max resid 0.0001319909
## ... Similar to previous best
## Run 174 stress 0.031621
## ... Procrustes: rmse 1.166813e-05 max resid 2.796564e-05
## ... Similar to previous best
## Run 175 stress 0.1981674
## Run 176 stress 0.03162102
## ... Procrustes: rmse 4.630551e-05 max resid 7.817752e-05
## ... Similar to previous best
## Run 177 stress 0.03162101
## ... Procrustes: rmse 4.096345e-05 max resid 9.581179e-05
## ... Similar to previous best
## Run 178 stress 0.1981674
## Run 179 stress 0.03162102
## ... Procrustes: rmse 5.055805e-05 max resid 0.0001212007
## ... Similar to previous best
## Run 180 stress 0.031621
## ... Procrustes: rmse 5.848016e-06 max resid 1.222744e-05
## ... Similar to previous best
## Run 181 stress 0.118766
## Run 182 stress 0.03162101
## ... Procrustes: rmse 3.078808e-05 max resid 7.237596e-05
## ... Similar to previous best
## Run 183 stress 0.03162101
## ... Procrustes: rmse 2.779067e-05 max resid 5.158787e-05
## ... Similar to previous best
## Run 184 stress 0.031621
## ... Procrustes: rmse 2.245717e-05 max resid 4.707777e-05
## ... Similar to previous best
## Run 185 stress 0.031621
## ... Procrustes: rmse 1.11261e-05 max resid 2.552253e-05
## ... Similar to previous best
## Run 186 stress 0.03162101
## ... Procrustes: rmse 2.853299e-05 max resid 6.487292e-05
## ... Similar to previous best
## Run 187 stress 0.03162102
## ... Procrustes: rmse 4.591022e-05 max resid 8.247311e-05
## ... Similar to previous best
## Run 188 stress 0.03162102
## ... Procrustes: rmse 5.082695e-05 max resid 0.0001208605
## ... Similar to previous best
## Run 189 stress 0.031621
## ... Procrustes: rmse 6.929919e-06 max resid 1.743558e-05
## ... Similar to previous best
## Run 190 stress 0.03162101
## ... Procrustes: rmse 2.820816e-05 max resid 6.301989e-05
## ... Similar to previous best
## Run 191 stress 0.031621
## ... Procrustes: rmse 1.210469e-05 max resid 2.892661e-05
## ... Similar to previous best
## Run 192 stress 0.031621
## ... Procrustes: rmse 9.50476e-06 max resid 1.684603e-05
## ... Similar to previous best
## Run 193 stress 0.031621
## ... New best solution
## ... Procrustes: rmse 2.521598e-06 max resid 5.830114e-06
## ... Similar to previous best
## Run 194 stress 0.03162103
## ... Procrustes: rmse 6.101365e-05 max resid 0.000140854
## ... Similar to previous best
## Run 195 stress 0.1187657
## Run 196 stress 0.1191519
## Run 197 stress 0.031621
## ... Procrustes: rmse 2.561607e-05 max resid 6.42839e-05
## ... Similar to previous best
## Run 198 stress 0.031621
## ... Procrustes: rmse 4.865201e-06 max resid 1.532206e-05
## ... Similar to previous best
## Run 199 stress 0.031621
## ... Procrustes: rmse 6.662297e-06 max resid 1.374684e-05
## ... Similar to previous best
## Run 200 stress 0.031621
## ... Procrustes: rmse 1.023853e-05 max resid 2.108739e-05
## ... Similar to previous best
## Run 201 stress 0.03162104
## ... Procrustes: rmse 5.957326e-05 max resid 0.0001203097
## ... Similar to previous best
## Run 202 stress 0.031621
## ... Procrustes: rmse 1.606285e-05 max resid 2.519604e-05
## ... Similar to previous best
## Run 203 stress 0.031621
## ... Procrustes: rmse 2.775233e-05 max resid 5.722555e-05
## ... Similar to previous best
## Run 204 stress 0.03162101
## ... Procrustes: rmse 2.555427e-05 max resid 5.67954e-05
## ... Similar to previous best
## Run 205 stress 0.03162101
## ... Procrustes: rmse 3.756727e-05 max resid 8.249568e-05
## ... Similar to previous best
## Run 206 stress 0.031621
## ... Procrustes: rmse 7.806649e-06 max resid 1.846651e-05
## ... Similar to previous best
## Run 207 stress 0.031621
## ... Procrustes: rmse 1.164527e-05 max resid 2.727621e-05
## ... Similar to previous best
## Run 208 stress 0.03162101
## ... Procrustes: rmse 2.865206e-05 max resid 6.556873e-05
## ... Similar to previous best
## Run 209 stress 0.031621
## ... Procrustes: rmse 1.522417e-05 max resid 3.670278e-05
## ... Similar to previous best
## Run 210 stress 0.03162102
## ... Procrustes: rmse 4.884887e-05 max resid 0.0001017565
## ... Similar to previous best
## Run 211 stress 0.031621
## ... Procrustes: rmse 2.500423e-05 max resid 5.801697e-05
## ... Similar to previous best
## Run 212 stress 0.031621
## ... Procrustes: rmse 6.63568e-06 max resid 1.507818e-05
## ... Similar to previous best
## Run 213 stress 0.031621
## ... Procrustes: rmse 1.329339e-05 max resid 3.007295e-05
## ... Similar to previous best
## Run 214 stress 0.03162101
## ... Procrustes: rmse 3.120549e-05 max resid 7.690983e-05
## ... Similar to previous best
## Run 215 stress 0.03162102
## ... Procrustes: rmse 4.728464e-05 max resid 9.435908e-05
## ... Similar to previous best
## Run 216 stress 0.031621
## ... Procrustes: rmse 7.452197e-06 max resid 1.788263e-05
## ... Similar to previous best
## Run 217 stress 0.031621
## ... Procrustes: rmse 1.010125e-05 max resid 1.63541e-05
## ... Similar to previous best
## Run 218 stress 0.031621
## ... Procrustes: rmse 4.386626e-06 max resid 8.98624e-06
## ... Similar to previous best
## Run 219 stress 0.1191515
## Run 220 stress 0.03162103
## ... Procrustes: rmse 6.605325e-05 max resid 0.000132241
## ... Similar to previous best
## Run 221 stress 0.031621
## ... Procrustes: rmse 9.316101e-06 max resid 2.341918e-05
## ... Similar to previous best
## Run 222 stress 0.03162101
## ... Procrustes: rmse 3.309602e-05 max resid 7.700954e-05
## ... Similar to previous best
## Run 223 stress 0.03162101
## ... Procrustes: rmse 3.544946e-05 max resid 8.26802e-05
## ... Similar to previous best
## Run 224 stress 0.03162102
## ... Procrustes: rmse 4.529568e-05 max resid 0.0001050997
## ... Similar to previous best
## Run 225 stress 0.03162102
## ... Procrustes: rmse 4.467845e-05 max resid 0.0001056701
## ... Similar to previous best
## Run 226 stress 0.03162101
## ... Procrustes: rmse 3.053417e-05 max resid 4.810234e-05
## ... Similar to previous best
## Run 227 stress 0.1187656
## Run 228 stress 0.03162101
## ... Procrustes: rmse 1.815836e-05 max resid 3.519596e-05
## ... Similar to previous best
## Run 229 stress 0.03162101
## ... Procrustes: rmse 3.546688e-05 max resid 8.18207e-05
## ... Similar to previous best
## Run 230 stress 0.1191518
## Run 231 stress 0.03162101
## ... Procrustes: rmse 3.260917e-05 max resid 6.778497e-05
## ... Similar to previous best
## Run 232 stress 0.1187657
## Run 233 stress 0.031621
## ... Procrustes: rmse 6.419169e-06 max resid 1.02464e-05
## ... Similar to previous best
## Run 234 stress 0.118766
## Run 235 stress 0.03162101
## ... Procrustes: rmse 3.834007e-05 max resid 7.822119e-05
## ... Similar to previous best
## Run 236 stress 0.031621
## ... Procrustes: rmse 2.525168e-05 max resid 5.975776e-05
## ... Similar to previous best
## Run 237 stress 0.03162101
## ... Procrustes: rmse 2.983077e-05 max resid 7.085165e-05
## ... Similar to previous best
## Run 238 stress 0.031621
## ... Procrustes: rmse 2.742355e-05 max resid 5.690232e-05
## ... Similar to previous best
## Run 239 stress 0.03162101
## ... Procrustes: rmse 3.700367e-05 max resid 8.480439e-05
## ... Similar to previous best
## Run 240 stress 0.03162102
## ... Procrustes: rmse 1.471176e-05 max resid 2.847833e-05
## ... Similar to previous best
## Run 241 stress 0.031621
## ... Procrustes: rmse 1.389428e-05 max resid 2.947285e-05
## ... Similar to previous best
## Run 242 stress 0.03162101
## ... Procrustes: rmse 3.678548e-05 max resid 6.48151e-05
## ... Similar to previous best
## Run 243 stress 0.031621
## ... Procrustes: rmse 5.51275e-06 max resid 1.46009e-05
## ... Similar to previous best
## Run 244 stress 0.031621
## ... Procrustes: rmse 1.771539e-05 max resid 3.620046e-05
## ... Similar to previous best
## Run 245 stress 0.03162103
## ... Procrustes: rmse 4.886214e-05 max resid 0.0001143833
## ... Similar to previous best
## Run 246 stress 0.03162103
## ... Procrustes: rmse 6.065058e-05 max resid 0.0001425243
## ... Similar to previous best
## Run 247 stress 0.03162101
## ... Procrustes: rmse 3.004105e-05 max resid 4.735659e-05
## ... Similar to previous best
## Run 248 stress 0.031621
## ... Procrustes: rmse 2.080854e-05 max resid 4.939758e-05
## ... Similar to previous best
## Run 249 stress 0.03162102
## ... Procrustes: rmse 5.439788e-05 max resid 0.0001259805
## ... Similar to previous best
## Run 250 stress 0.031621
## ... Procrustes: rmse 1.874251e-05 max resid 3.006794e-05
## ... Similar to previous best
## Run 251 stress 0.03162102
## ... Procrustes: rmse 1.362355e-05 max resid 2.722053e-05
## ... Similar to previous best
## Run 252 stress 0.03162102
## ... Procrustes: rmse 5.390983e-05 max resid 9.172175e-05
## ... Similar to previous best
## Run 253 stress 0.031621
## ... Procrustes: rmse 2.846932e-05 max resid 6.097951e-05
## ... Similar to previous best
## Run 254 stress 0.03162101
## ... Procrustes: rmse 4.163275e-05 max resid 9.707878e-05
## ... Similar to previous best
## Run 255 stress 0.03162101
## ... Procrustes: rmse 3.21541e-05 max resid 6.446942e-05
## ... Similar to previous best
## Run 256 stress 0.031621
## ... Procrustes: rmse 7.954896e-06 max resid 1.925987e-05
## ... Similar to previous best
## Run 257 stress 0.031621
## ... Procrustes: rmse 2.155519e-05 max resid 4.681419e-05
## ... Similar to previous best
## Run 258 stress 0.03162101
## ... Procrustes: rmse 2.575246e-05 max resid 6.010111e-05
## ... Similar to previous best
## Run 259 stress 0.03162101
## ... Procrustes: rmse 3.884304e-05 max resid 8.154193e-05
## ... Similar to previous best
## Run 260 stress 0.031621
## ... Procrustes: rmse 9.801094e-06 max resid 1.970275e-05
## ... Similar to previous best
## Run 261 stress 0.03162109
## ... Procrustes: rmse 2.620291e-05 max resid 5.34167e-05
## ... Similar to previous best
## Run 262 stress 0.031621
## ... Procrustes: rmse 3.097318e-06 max resid 5.958118e-06
## ... Similar to previous best
## Run 263 stress 0.03162101
## ... Procrustes: rmse 2.987417e-05 max resid 7.166639e-05
## ... Similar to previous best
## Run 264 stress 0.031621
## ... Procrustes: rmse 1.773866e-05 max resid 4.267063e-05
## ... Similar to previous best
## Run 265 stress 0.031621
## ... Procrustes: rmse 2.465706e-05 max resid 5.850309e-05
## ... Similar to previous best
## Run 266 stress 0.03162101
## ... Procrustes: rmse 1.16518e-05 max resid 2.26784e-05
## ... Similar to previous best
## Run 267 stress 0.031621
## ... Procrustes: rmse 9.673572e-06 max resid 1.80434e-05
## ... Similar to previous best
## Run 268 stress 0.031621
## ... Procrustes: rmse 1.771544e-05 max resid 4.474723e-05
## ... Similar to previous best
## Run 269 stress 0.031621
## ... Procrustes: rmse 7.831905e-06 max resid 1.557441e-05
## ... Similar to previous best
## Run 270 stress 0.031621
## ... Procrustes: rmse 4.726696e-06 max resid 9.75517e-06
## ... Similar to previous best
## Run 271 stress 0.031621
## ... Procrustes: rmse 2.49684e-05 max resid 4.725055e-05
## ... Similar to previous best
## Run 272 stress 0.031621
## ... Procrustes: rmse 1.027765e-05 max resid 2.195593e-05
## ... Similar to previous best
## Run 273 stress 0.03162101
## ... Procrustes: rmse 1.77181e-05 max resid 3.868875e-05
## ... Similar to previous best
## Run 274 stress 0.1187661
## Run 275 stress 0.031621
## ... Procrustes: rmse 9.127269e-06 max resid 1.704117e-05
## ... Similar to previous best
## Run 276 stress 0.031621
## ... Procrustes: rmse 2.005782e-05 max resid 4.102564e-05
## ... Similar to previous best
## Run 277 stress 0.031621
## ... Procrustes: rmse 1.001543e-05 max resid 2.301434e-05
## ... Similar to previous best
## Run 278 stress 0.031621
## ... Procrustes: rmse 1.318197e-05 max resid 2.33926e-05
## ... Similar to previous best
## Run 279 stress 0.1981674
## Run 280 stress 0.031621
## ... Procrustes: rmse 9.499808e-06 max resid 1.537283e-05
## ... Similar to previous best
## Run 281 stress 0.031621
## ... Procrustes: rmse 5.405042e-06 max resid 1.482319e-05
## ... Similar to previous best
## Run 282 stress 0.03162102
## ... Procrustes: rmse 4.465903e-05 max resid 0.0001047101
## ... Similar to previous best
## Run 283 stress 0.031621
## ... Procrustes: rmse 1.507289e-05 max resid 3.548877e-05
## ... Similar to previous best
## Run 284 stress 0.031621
## ... Procrustes: rmse 2.5009e-05 max resid 4.968052e-05
## ... Similar to previous best
## Run 285 stress 0.03162101
## ... Procrustes: rmse 3.632211e-05 max resid 8.691044e-05
## ... Similar to previous best
## Run 286 stress 0.03162101
## ... Procrustes: rmse 3.217243e-05 max resid 8.124143e-05
## ... Similar to previous best
## Run 287 stress 0.031621
## ... Procrustes: rmse 5.653555e-06 max resid 1.286426e-05
## ... Similar to previous best
## Run 288 stress 0.031621
## ... Procrustes: rmse 1.393831e-05 max resid 3.442234e-05
## ... Similar to previous best
## Run 289 stress 0.03162104
## ... Procrustes: rmse 5.625302e-05 max resid 0.0001047889
## ... Similar to previous best
## Run 290 stress 0.031621
## ... Procrustes: rmse 1.955704e-06 max resid 3.634441e-06
## ... Similar to previous best
## Run 291 stress 0.031621
## ... Procrustes: rmse 2.62551e-05 max resid 6.254668e-05
## ... Similar to previous best
## Run 292 stress 0.03162101
## ... Procrustes: rmse 4.159686e-05 max resid 8.453596e-05
## ... Similar to previous best
## Run 293 stress 0.031621
## ... Procrustes: rmse 8.119365e-06 max resid 1.551695e-05
## ... Similar to previous best
## Run 294 stress 0.03162102
## ... Procrustes: rmse 5.454852e-05 max resid 9.742201e-05
## ... Similar to previous best
## Run 295 stress 0.031621
## ... Procrustes: rmse 4.003479e-06 max resid 8.50966e-06
## ... Similar to previous best
## Run 296 stress 0.1191515
## Run 297 stress 0.031621
## ... Procrustes: rmse 1.773409e-06 max resid 4.036653e-06
## ... Similar to previous best
## Run 298 stress 0.031621
## ... Procrustes: rmse 2.301144e-05 max resid 5.411951e-05
## ... Similar to previous best
## Run 299 stress 0.031621
## ... Procrustes: rmse 2.299835e-05 max resid 4.528644e-05
## ... Similar to previous best
## Run 300 stress 0.031621
## ... Procrustes: rmse 5.275338e-06 max resid 1.208664e-05
## ... Similar to previous best
## Run 301 stress 0.03162101
## ... Procrustes: rmse 3.68009e-05 max resid 8.487723e-05
## ... Similar to previous best
## Run 302 stress 0.031621
## ... Procrustes: rmse 2.215454e-06 max resid 4.850805e-06
## ... Similar to previous best
## Run 303 stress 0.03162102
## ... Procrustes: rmse 5.100222e-05 max resid 0.0001270559
## ... Similar to previous best
## Run 304 stress 0.03162103
## ... Procrustes: rmse 5.252975e-05 max resid 0.0001051526
## ... Similar to previous best
## Run 305 stress 0.03162102
## ... Procrustes: rmse 5.092374e-05 max resid 0.0001041497
## ... Similar to previous best
## Run 306 stress 0.03162103
## ... Procrustes: rmse 6.332668e-05 max resid 0.0001277623
## ... Similar to previous best
## Run 307 stress 0.03162102
## ... Procrustes: rmse 4.618426e-05 max resid 9.87755e-05
## ... Similar to previous best
## Run 308 stress 0.03162102
## ... Procrustes: rmse 4.594207e-05 max resid 9.841356e-05
## ... Similar to previous best
## Run 309 stress 0.1191527
## Run 310 stress 0.031621
## ... Procrustes: rmse 6.53532e-06 max resid 1.546128e-05
## ... Similar to previous best
## Run 311 stress 0.031621
## ... Procrustes: rmse 1.064084e-05 max resid 2.361864e-05
## ... Similar to previous best
## Run 312 stress 0.031621
## ... Procrustes: rmse 1.878002e-05 max resid 3.376527e-05
## ... Similar to previous best
## Run 313 stress 0.03162104
## ... Procrustes: rmse 6.381623e-05 max resid 0.0001270598
## ... Similar to previous best
## Run 314 stress 0.031621
## ... Procrustes: rmse 7.820381e-06 max resid 1.492844e-05
## ... Similar to previous best
## Run 315 stress 0.03162101
## ... Procrustes: rmse 1.016109e-05 max resid 2.462488e-05
## ... Similar to previous best
## Run 316 stress 0.03162102
## ... Procrustes: rmse 5.010635e-05 max resid 0.0001163893
## ... Similar to previous best
## Run 317 stress 0.03162103
## ... Procrustes: rmse 6.174573e-05 max resid 0.0001522073
## ... Similar to previous best
## Run 318 stress 0.03162101
## ... Procrustes: rmse 2.864282e-05 max resid 6.794298e-05
## ... Similar to previous best
## Run 319 stress 0.03162103
## ... Procrustes: rmse 6.511396e-05 max resid 0.0001283752
## ... Similar to previous best
## Run 320 stress 0.031621
## ... Procrustes: rmse 2.197723e-05 max resid 4.661631e-05
## ... Similar to previous best
## Run 321 stress 0.031621
## ... Procrustes: rmse 8.17618e-06 max resid 2.034373e-05
## ... Similar to previous best
## Run 322 stress 0.03162101
## ... Procrustes: rmse 3.051579e-05 max resid 7.207257e-05
## ... Similar to previous best
## Run 323 stress 0.03162102
## ... Procrustes: rmse 5.363019e-05 max resid 0.0001347255
## ... Similar to previous best
## Run 324 stress 0.031621
## ... Procrustes: rmse 9.430367e-07 max resid 1.684579e-06
## ... Similar to previous best
## Run 325 stress 0.031621
## ... Procrustes: rmse 1.922146e-05 max resid 3.571825e-05
## ... Similar to previous best
## Run 326 stress 0.03162102
## ... Procrustes: rmse 4.969294e-05 max resid 0.0001148025
## ... Similar to previous best
## Run 327 stress 0.031621
## ... Procrustes: rmse 5.514203e-06 max resid 1.080886e-05
## ... Similar to previous best
## Run 328 stress 0.031621
## ... Procrustes: rmse 1.621782e-05 max resid 3.276081e-05
## ... Similar to previous best
## Run 329 stress 0.031621
## ... Procrustes: rmse 3.433447e-06 max resid 6.86281e-06
## ... Similar to previous best
## Run 330 stress 0.03162101
## ... Procrustes: rmse 2.98061e-05 max resid 6.963108e-05
## ... Similar to previous best
## Run 331 stress 0.03162101
## ... Procrustes: rmse 3.733283e-05 max resid 8.966791e-05
## ... Similar to previous best
## Run 332 stress 0.03162102
## ... Procrustes: rmse 4.806131e-05 max resid 9.866614e-05
## ... Similar to previous best
## Run 333 stress 0.031621
## ... Procrustes: rmse 2.555686e-05 max resid 6.184285e-05
## ... Similar to previous best
## Run 334 stress 0.031621
## ... Procrustes: rmse 2.182733e-06 max resid 3.848446e-06
## ... Similar to previous best
## Run 335 stress 0.031621
## ... Procrustes: rmse 1.62032e-05 max resid 3.116127e-05
## ... Similar to previous best
## Run 336 stress 0.03162101
## ... Procrustes: rmse 2.587731e-05 max resid 4.643055e-05
## ... Similar to previous best
## Run 337 stress 0.03162101
## ... Procrustes: rmse 3.440664e-05 max resid 7.823454e-05
## ... Similar to previous best
## Run 338 stress 0.031621
## ... Procrustes: rmse 8.438584e-07 max resid 2.170056e-06
## ... Similar to previous best
## Run 339 stress 0.031621
## ... Procrustes: rmse 2.239702e-05 max resid 5.446123e-05
## ... Similar to previous best
## Run 340 stress 0.1187657
## Run 341 stress 0.03162101
## ... Procrustes: rmse 3.868222e-05 max resid 9.01448e-05
## ... Similar to previous best
## Run 342 stress 0.1187659
## Run 343 stress 0.1187659
## Run 344 stress 0.031621
## ... Procrustes: rmse 2.202503e-05 max resid 5.51287e-05
## ... Similar to previous best
## Run 345 stress 0.031621
## ... Procrustes: rmse 1.81101e-05 max resid 4.137687e-05
## ... Similar to previous best
## Run 346 stress 0.03162103
## ... Procrustes: rmse 5.964102e-05 max resid 9.50507e-05
## ... Similar to previous best
## Run 347 stress 0.03162101
## ... Procrustes: rmse 4.098713e-05 max resid 9.809675e-05
## ... Similar to previous best
## Run 348 stress 0.03162103
## ... Procrustes: rmse 5.502964e-05 max resid 0.0001289752
## ... Similar to previous best
## Run 349 stress 0.031621
## ... Procrustes: rmse 1.380752e-05 max resid 2.161091e-05
## ... Similar to previous best
## Run 350 stress 0.031621
## ... Procrustes: rmse 7.641443e-06 max resid 1.560824e-05
## ... Similar to previous best
## Run 351 stress 0.03162101
## ... Procrustes: rmse 4.421527e-05 max resid 9.031188e-05
## ... Similar to previous best
## Run 352 stress 0.031621
## ... Procrustes: rmse 2.698649e-05 max resid 5.185112e-05
## ... Similar to previous best
## Run 353 stress 0.03162102
## ... Procrustes: rmse 4.794936e-05 max resid 0.0001118257
## ... Similar to previous best
## Run 354 stress 0.031621
## ... Procrustes: rmse 6.963173e-06 max resid 1.649219e-05
## ... Similar to previous best
## Run 355 stress 0.031621
## ... Procrustes: rmse 2.008781e-06 max resid 3.591873e-06
## ... Similar to previous best
## Run 356 stress 0.031621
## ... Procrustes: rmse 6.1484e-06 max resid 1.087639e-05
## ... Similar to previous best
## Run 357 stress 0.031621
## ... Procrustes: rmse 2.165102e-05 max resid 4.330612e-05
## ... Similar to previous best
## Run 358 stress 0.03162101
## ... Procrustes: rmse 2.936675e-05 max resid 6.659112e-05
## ... Similar to previous best
## Run 359 stress 0.1187657
## Run 360 stress 0.03162102
## ... Procrustes: rmse 5.462521e-05 max resid 0.0001285533
## ... Similar to previous best
## Run 361 stress 0.03162103
## ... Procrustes: rmse 5.618067e-05 max resid 0.0001341778
## ... Similar to previous best
## Run 362 stress 0.031621
## ... Procrustes: rmse 9.333298e-06 max resid 2.342511e-05
## ... Similar to previous best
## Run 363 stress 0.031621
## ... Procrustes: rmse 1.532115e-05 max resid 3.569832e-05
## ... Similar to previous best
## Run 364 stress 0.031621
## ... Procrustes: rmse 8.271903e-06 max resid 2.042447e-05
## ... Similar to previous best
## Run 365 stress 0.03162103
## ... Procrustes: rmse 5.54202e-05 max resid 0.0001259455
## ... Similar to previous best
## Run 366 stress 0.3317222
## Run 367 stress 0.03162101
## ... Procrustes: rmse 4.417028e-05 max resid 8.861835e-05
## ... Similar to previous best
## Run 368 stress 0.1191515
## Run 369 stress 0.03162101
## ... Procrustes: rmse 2.725949e-05 max resid 5.532545e-05
## ... Similar to previous best
## Run 370 stress 0.03162101
## ... Procrustes: rmse 1.940221e-05 max resid 4.409348e-05
## ... Similar to previous best
## Run 371 stress 0.031621
## ... Procrustes: rmse 1.881571e-05 max resid 4.33828e-05
## ... Similar to previous best
## Run 372 stress 0.03162101
## ... Procrustes: rmse 3.031257e-05 max resid 7.132192e-05
## ... Similar to previous best
## Run 373 stress 0.03162101
## ... Procrustes: rmse 2.760437e-05 max resid 6.430788e-05
## ... Similar to previous best
## Run 374 stress 0.031621
## ... Procrustes: rmse 1.610537e-05 max resid 3.833081e-05
## ... Similar to previous best
## Run 375 stress 0.1187661
## Run 376 stress 0.031621
## ... Procrustes: rmse 1.157015e-05 max resid 2.658452e-05
## ... Similar to previous best
## Run 377 stress 0.031621
## ... Procrustes: rmse 2.795223e-05 max resid 5.13678e-05
## ... Similar to previous best
## Run 378 stress 0.031621
## ... Procrustes: rmse 3.126044e-06 max resid 5.035345e-06
## ... Similar to previous best
## Run 379 stress 0.03162101
## ... Procrustes: rmse 3.434014e-05 max resid 7.015971e-05
## ... Similar to previous best
## Run 380 stress 0.031621
## ... Procrustes: rmse 9.756333e-06 max resid 1.411964e-05
## ... Similar to previous best
## Run 381 stress 0.031621
## ... Procrustes: rmse 1.951509e-05 max resid 3.87593e-05
## ... Similar to previous best
## Run 382 stress 0.03162101
## ... Procrustes: rmse 3.81548e-05 max resid 8.220391e-05
## ... Similar to previous best
## Run 383 stress 0.031621
## ... Procrustes: rmse 5.791401e-06 max resid 1.379296e-05
## ... Similar to previous best
## Run 384 stress 0.031621
## ... Procrustes: rmse 4.585624e-06 max resid 9.859195e-06
## ... Similar to previous best
## Run 385 stress 0.031621
## ... Procrustes: rmse 1.576562e-05 max resid 3.043579e-05
## ... Similar to previous best
## Run 386 stress 0.031621
## ... Procrustes: rmse 1.032288e-05 max resid 2.376469e-05
## ... Similar to previous best
## Run 387 stress 0.03162102
## ... Procrustes: rmse 5.072997e-05 max resid 0.000101732
## ... Similar to previous best
## Run 388 stress 0.03162104
## ... Procrustes: rmse 7.252605e-05 max resid 0.0001483872
## ... Similar to previous best
## Run 389 stress 0.1981674
## Run 390 stress 0.03162103
## ... Procrustes: rmse 5.718351e-05 max resid 9.466634e-05
## ... Similar to previous best
## Run 391 stress 0.03162102
## ... Procrustes: rmse 5.184295e-05 max resid 0.0001171764
## ... Similar to previous best
## Run 392 stress 0.031621
## ... Procrustes: rmse 1.298245e-05 max resid 3.104307e-05
## ... Similar to previous best
## Run 393 stress 0.031621
## ... Procrustes: rmse 3.313745e-06 max resid 7.939043e-06
## ... Similar to previous best
## Run 394 stress 0.03162101
## ... Procrustes: rmse 3.954206e-05 max resid 9.069276e-05
## ... Similar to previous best
## Run 395 stress 0.031621
## ... Procrustes: rmse 7.982671e-06 max resid 1.866089e-05
## ... Similar to previous best
## Run 396 stress 0.1187655
## Run 397 stress 0.031621
## ... Procrustes: rmse 2.274673e-05 max resid 5.212107e-05
## ... Similar to previous best
## Run 398 stress 0.03162101
## ... Procrustes: rmse 4.022564e-05 max resid 7.657797e-05
## ... Similar to previous best
## Run 399 stress 0.031621
## ... Procrustes: rmse 9.807073e-06 max resid 2.137151e-05
## ... Similar to previous best
## Run 400 stress 0.031621
## ... Procrustes: rmse 1.521868e-05 max resid 3.290913e-05
## ... Similar to previous best
## Run 401 stress 0.031621
## ... Procrustes: rmse 1.73855e-05 max resid 3.489459e-05
## ... Similar to previous best
## Run 402 stress 0.03162101
## ... Procrustes: rmse 4.389864e-05 max resid 0.000102793
## ... Similar to previous best
## Run 403 stress 0.031621
## ... Procrustes: rmse 6.127446e-06 max resid 1.201648e-05
## ... Similar to previous best
## Run 404 stress 0.031621
## ... Procrustes: rmse 6.208345e-06 max resid 1.393885e-05
## ... Similar to previous best
## Run 405 stress 0.03162101
## ... Procrustes: rmse 3.330648e-05 max resid 6.337335e-05
## ... Similar to previous best
## Run 406 stress 0.031621
## ... Procrustes: rmse 2.774427e-06 max resid 6.771931e-06
## ... Similar to previous best
## Run 407 stress 0.031621
## ... Procrustes: rmse 6.339803e-06 max resid 1.405238e-05
## ... Similar to previous best
## Run 408 stress 0.031621
## ... Procrustes: rmse 2.106975e-05 max resid 4.385681e-05
## ... Similar to previous best
## Run 409 stress 0.031621
## ... Procrustes: rmse 2.513257e-05 max resid 6.068122e-05
## ... Similar to previous best
## Run 410 stress 0.03162106
## ... Procrustes: rmse 1.992369e-05 max resid 4.674194e-05
## ... Similar to previous best
## Run 411 stress 0.031621
## ... Procrustes: rmse 2.178136e-05 max resid 4.646522e-05
## ... Similar to previous best
## Run 412 stress 0.03162102
## ... Procrustes: rmse 5.230294e-05 max resid 8.213883e-05
## ... Similar to previous best
## Run 413 stress 0.03162103
## ... Procrustes: rmse 5.808684e-05 max resid 0.000116416
## ... Similar to previous best
## Run 414 stress 0.031621
## ... Procrustes: rmse 5.846796e-06 max resid 1.333461e-05
## ... Similar to previous best
## Run 415 stress 0.031621
## ... Procrustes: rmse 2.350514e-05 max resid 4.844502e-05
## ... Similar to previous best
## Run 416 stress 0.03162102
## ... Procrustes: rmse 4.347277e-05 max resid 8.917049e-05
## ... Similar to previous best
## Run 417 stress 0.03162101
## ... Procrustes: rmse 2.445669e-05 max resid 4.8088e-05
## ... Similar to previous best
## Run 418 stress 0.03162101
## ... Procrustes: rmse 1.808462e-05 max resid 4.103803e-05
## ... Similar to previous best
## Run 419 stress 0.031621
## ... Procrustes: rmse 8.829855e-06 max resid 2.119028e-05
## ... Similar to previous best
## Run 420 stress 0.03162101
## ... Procrustes: rmse 4.286106e-05 max resid 0.0001008094
## ... Similar to previous best
## Run 421 stress 0.03162104
## ... Procrustes: rmse 7.132153e-05 max resid 0.0001328754
## ... Similar to previous best
## Run 422 stress 0.1187655
## Run 423 stress 0.031621
## ... Procrustes: rmse 4.733798e-06 max resid 8.81212e-06
## ... Similar to previous best
## Run 424 stress 0.031621
## ... Procrustes: rmse 7.051411e-06 max resid 1.513595e-05
## ... Similar to previous best
## Run 425 stress 0.03162101
## ... Procrustes: rmse 1.71846e-05 max resid 3.58615e-05
## ... Similar to previous best
## Run 426 stress 0.03162103
## ... Procrustes: rmse 6.184984e-05 max resid 0.0001470515
## ... Similar to previous best
## Run 427 stress 0.03162103
## ... Procrustes: rmse 6.764087e-05 max resid 0.0001066761
## ... Similar to previous best
## Run 428 stress 0.031621
## ... Procrustes: rmse 1.050971e-05 max resid 2.248725e-05
## ... Similar to previous best
## Run 429 stress 0.031621
## ... Procrustes: rmse 8.436339e-06 max resid 2.018814e-05
## ... Similar to previous best
## Run 430 stress 0.031621
## ... Procrustes: rmse 1.481083e-05 max resid 3.663471e-05
## ... Similar to previous best
## Run 431 stress 0.1981674
## Run 432 stress 0.031621
## ... Procrustes: rmse 9.292965e-06 max resid 2.135687e-05
## ... Similar to previous best
## Run 433 stress 0.03162104
## ... Procrustes: rmse 6.653549e-05 max resid 0.0001516225
## ... Similar to previous best
## Run 434 stress 0.1191515
## Run 435 stress 0.1187656
## Run 436 stress 0.031621
## ... Procrustes: rmse 1.263866e-05 max resid 2.946114e-05
## ... Similar to previous best
## Run 437 stress 0.031621
## ... Procrustes: rmse 2.837541e-05 max resid 6.02999e-05
## ... Similar to previous best
## Run 438 stress 0.031621
## ... Procrustes: rmse 8.623581e-06 max resid 1.394611e-05
## ... Similar to previous best
## Run 439 stress 0.03162103
## ... Procrustes: rmse 5.309177e-05 max resid 0.0001223542
## ... Similar to previous best
## Run 440 stress 0.1191515
## Run 441 stress 0.03162101
## ... Procrustes: rmse 2.423854e-05 max resid 5.72003e-05
## ... Similar to previous best
## Run 442 stress 0.03162102
## ... Procrustes: rmse 4.980344e-05 max resid 0.0001201066
## ... Similar to previous best
## Run 443 stress 0.03162102
## ... Procrustes: rmse 4.985856e-05 max resid 9.864567e-05
## ... Similar to previous best
## Run 444 stress 0.03162102
## ... Procrustes: rmse 4.727516e-05 max resid 0.000110797
## ... Similar to previous best
## Run 445 stress 0.03162101
## ... Procrustes: rmse 2.166502e-05 max resid 5.249332e-05
## ... Similar to previous best
## Run 446 stress 0.031621
## ... Procrustes: rmse 6.516198e-06 max resid 1.007774e-05
## ... Similar to previous best
## Run 447 stress 0.031621
## ... Procrustes: rmse 2.105303e-05 max resid 3.698335e-05
## ... Similar to previous best
## Run 448 stress 0.03162106
## ... Procrustes: rmse 2.053263e-05 max resid 4.111035e-05
## ... Similar to previous best
## Run 449 stress 0.03162101
## ... Procrustes: rmse 4.331772e-05 max resid 0.0001015884
## ... Similar to previous best
## Run 450 stress 0.03162101
## ... Procrustes: rmse 4.014086e-05 max resid 9.54383e-05
## ... Similar to previous best
## Run 451 stress 0.03162101
## ... Procrustes: rmse 2.797738e-05 max resid 6.482225e-05
## ... Similar to previous best
## Run 452 stress 0.1981674
## Run 453 stress 0.031621
## ... Procrustes: rmse 2.095874e-05 max resid 4.411171e-05
## ... Similar to previous best
## Run 454 stress 0.03162102
## ... Procrustes: rmse 4.857097e-05 max resid 0.0001012631
## ... Similar to previous best
## Run 455 stress 0.031621
## ... Procrustes: rmse 9.290421e-06 max resid 1.941019e-05
## ... Similar to previous best
## Run 456 stress 0.03162103
## ... Procrustes: rmse 5.770344e-05 max resid 9.278231e-05
## ... Similar to previous best
## Run 457 stress 0.031621
## ... Procrustes: rmse 1.418104e-05 max resid 2.813042e-05
## ... Similar to previous best
## Run 458 stress 0.3551196
## Run 459 stress 0.031621
## ... Procrustes: rmse 4.768334e-06 max resid 1.042157e-05
## ... Similar to previous best
## Run 460 stress 0.03162101
## ... Procrustes: rmse 2.666896e-05 max resid 6.374656e-05
## ... Similar to previous best
## Run 461 stress 0.03162101
## ... Procrustes: rmse 2.762262e-05 max resid 6.761691e-05
## ... Similar to previous best
## Run 462 stress 0.031621
## ... Procrustes: rmse 1.980825e-05 max resid 3.85288e-05
## ... Similar to previous best
## Run 463 stress 0.031621
## ... Procrustes: rmse 8.564702e-06 max resid 1.723468e-05
## ... Similar to previous best
## Run 464 stress 0.03162101
## ... Procrustes: rmse 2.943471e-05 max resid 6.96396e-05
## ... Similar to previous best
## Run 465 stress 0.031621
## ... Procrustes: rmse 1.15259e-05 max resid 3.194703e-05
## ... Similar to previous best
## Run 466 stress 0.031621
## ... Procrustes: rmse 1.820387e-05 max resid 3.601195e-05
## ... Similar to previous best
## Run 467 stress 0.03162101
## ... Procrustes: rmse 3.777593e-05 max resid 9.030726e-05
## ... Similar to previous best
## Run 468 stress 0.031621
## ... Procrustes: rmse 7.360897e-06 max resid 1.222906e-05
## ... Similar to previous best
## Run 469 stress 0.031621
## ... Procrustes: rmse 2.643158e-05 max resid 6.412723e-05
## ... Similar to previous best
## Run 470 stress 0.03162101
## ... Procrustes: rmse 1.757695e-05 max resid 4.141898e-05
## ... Similar to previous best
## Run 471 stress 0.031621
## ... Procrustes: rmse 1.45417e-05 max resid 3.278287e-05
## ... Similar to previous best
## Run 472 stress 0.031621
## ... Procrustes: rmse 6.461951e-06 max resid 1.31722e-05
## ... Similar to previous best
## Run 473 stress 0.03162102
## ... Procrustes: rmse 5.075325e-05 max resid 8.010106e-05
## ... Similar to previous best
## Run 474 stress 0.031621
## ... Procrustes: rmse 8.208959e-06 max resid 1.809015e-05
## ... Similar to previous best
## Run 475 stress 0.031621
## ... Procrustes: rmse 1.142672e-05 max resid 2.244924e-05
## ... Similar to previous best
## Run 476 stress 0.03162104
## ... Procrustes: rmse 6.092277e-05 max resid 0.0001195763
## ... Similar to previous best
## Run 477 stress 0.031621
## ... Procrustes: rmse 6.852705e-06 max resid 1.781141e-05
## ... Similar to previous best
## Run 478 stress 0.03162103
## ... Procrustes: rmse 5.651094e-05 max resid 0.00013569
## ... Similar to previous best
## Run 479 stress 0.031621
## ... Procrustes: rmse 2.658169e-05 max resid 6.652512e-05
## ... Similar to previous best
## Run 480 stress 0.03162101
## ... Procrustes: rmse 2.894324e-05 max resid 6.720548e-05
## ... Similar to previous best
## Run 481 stress 0.031621
## ... Procrustes: rmse 1.201014e-05 max resid 1.902254e-05
## ... Similar to previous best
## Run 482 stress 0.031621
## ... Procrustes: rmse 9.446478e-06 max resid 1.951894e-05
## ... Similar to previous best
## Run 483 stress 0.1187659
## Run 484 stress 0.031621
## ... Procrustes: rmse 8.469874e-06 max resid 1.857212e-05
## ... Similar to previous best
## Run 485 stress 0.031621
## ... Procrustes: rmse 1.183276e-05 max resid 2.759344e-05
## ... Similar to previous best
## Run 486 stress 0.03162101
## ... Procrustes: rmse 4.416679e-05 max resid 8.889246e-05
## ... Similar to previous best
## Run 487 stress 0.03162101
## ... Procrustes: rmse 3.310883e-05 max resid 7.692322e-05
## ... Similar to previous best
## Run 488 stress 0.03162101
## ... Procrustes: rmse 3.473826e-05 max resid 8.125015e-05
## ... Similar to previous best
## Run 489 stress 0.031621
## ... Procrustes: rmse 1.81563e-05 max resid 4.272676e-05
## ... Similar to previous best
## Run 490 stress 0.03162101
## ... Procrustes: rmse 3.896431e-05 max resid 8.084616e-05
## ... Similar to previous best
## Run 491 stress 0.1187657
## Run 492 stress 0.031621
## ... Procrustes: rmse 2.338492e-05 max resid 4.431362e-05
## ... Similar to previous best
## Run 493 stress 0.031621
## ... Procrustes: rmse 1.381102e-05 max resid 2.728872e-05
## ... Similar to previous best
## Run 494 stress 0.03162103
## ... Procrustes: rmse 5.02438e-05 max resid 0.0001179799
## ... Similar to previous best
## Run 495 stress 0.03162101
## ... Procrustes: rmse 1.9142e-05 max resid 3.403021e-05
## ... Similar to previous best
## Run 496 stress 0.03162102
## ... Procrustes: rmse 5.358205e-05 max resid 9.178634e-05
## ... Similar to previous best
## Run 497 stress 0.031621
## ... Procrustes: rmse 1.746851e-05 max resid 3.899821e-05
## ... Similar to previous best
## Run 498 stress 0.03162102
## ... Procrustes: rmse 4.838475e-05 max resid 0.000100881
## ... Similar to previous best
## Run 499 stress 0.03162102
## ... Procrustes: rmse 5.026573e-05 max resid 9.465647e-05
## ... Similar to previous best
## Run 500 stress 0.031621
## ... Procrustes: rmse 1.032982e-05 max resid 2.159863e-05
## ... Similar to previous best
## *** Best solution repeated 279 times# Ocean sites and mixed lakes
envbom_NMDS <- metaMDS(envbom_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.005088109
## Run 1 stress 0.005125002
## ... Procrustes: rmse 0.002899176 max resid 0.006509389
## ... Similar to previous best
## Run 2 stress 0.005092087
## ... Procrustes: rmse 0.0003687988 max resid 0.000827035
## ... Similar to previous best
## Run 3 stress 0.005054225
## ... New best solution
## ... Procrustes: rmse 0.008626327 max resid 0.01882237
## Run 4 stress 0.05243086
## Run 5 stress 0.005054131
## ... New best solution
## ... Procrustes: rmse 7.715502e-05 max resid 0.0001473124
## ... Similar to previous best
## Run 6 stress 0.005065029
## ... Procrustes: rmse 0.005731604 max resid 0.01238605
## Run 7 stress 0.005054173
## ... Procrustes: rmse 4.808988e-05 max resid 9.322097e-05
## ... Similar to previous best
## Run 8 stress 0.005054161
## ... Procrustes: rmse 3.69364e-05 max resid 7.728495e-05
## ... Similar to previous best
## Run 9 stress 0.05243067
## Run 10 stress 0.005054154
## ... Procrustes: rmse 3.075589e-05 max resid 6.803173e-05
## ... Similar to previous best
## Run 11 stress 0.005054139
## ... Procrustes: rmse 2.377324e-05 max resid 5.599994e-05
## ... Similar to previous best
## Run 12 stress 0.005054242
## ... Procrustes: rmse 8.913147e-05 max resid 0.0001714414
## ... Similar to previous best
## Run 13 stress 0.005054222
## ... Procrustes: rmse 7.108938e-05 max resid 0.0001348719
## ... Similar to previous best
## Run 14 stress 0.00505423
## ... Procrustes: rmse 8.252169e-05 max resid 0.0001582232
## ... Similar to previous best
## Run 15 stress 0.005054229
## ... Procrustes: rmse 8.281739e-05 max resid 0.000159032
## ... Similar to previous best
## Run 16 stress 0.05243073
## Run 17 stress 0.00505434
## ... Procrustes: rmse 0.001502001 max resid 0.00322352
## ... Similar to previous best
## Run 18 stress 0.005123308
## ... Procrustes: rmse 0.01134052 max resid 0.02493054
## Run 19 stress 0.005054248
## ... Procrustes: rmse 9.41449e-05 max resid 0.0001815779
## ... Similar to previous best
## Run 20 stress 0.00505416
## ... Procrustes: rmse 3.906524e-05 max resid 8.040733e-05
## ... Similar to previous best
## Run 21 stress 0.05243073
## Run 22 stress 0.05243089
## Run 23 stress 0.05243089
## Run 24 stress 0.005054124
## ... New best solution
## ... Procrustes: rmse 1.749373e-05 max resid 4.251737e-05
## ... Similar to previous best
## Run 25 stress 0.005054224
## ... Procrustes: rmse 7.22044e-05 max resid 0.0001622062
## ... Similar to previous best
## Run 26 stress 0.005054225
## ... Procrustes: rmse 7.214798e-05 max resid 0.0001618414
## ... Similar to previous best
## Run 27 stress 0.005054209
## ... Procrustes: rmse 6.27686e-05 max resid 0.0001410466
## ... Similar to previous best
## Run 28 stress 0.005054186
## ... Procrustes: rmse 4.689217e-05 max resid 0.0001051023
## ... Similar to previous best
## Run 29 stress 0.0524311
## Run 30 stress 0.005059402
## ... Procrustes: rmse 0.004597257 max resid 0.009895429
## ... Similar to previous best
## Run 31 stress 0.005117474
## ... Procrustes: rmse 0.01094148 max resid 0.02400286
## Run 32 stress 0.005054083
## ... New best solution
## ... Procrustes: rmse 4.204263e-05 max resid 9.478634e-05
## ... Similar to previous best
## Run 33 stress 0.005123536
## ... Procrustes: rmse 0.01131751 max resid 0.0248445
## Run 34 stress 0.05243095
## Run 35 stress 0.05243074
## Run 36 stress 0.005062385
## ... Procrustes: rmse 0.005212772 max resid 0.01122532
## Run 37 stress 0.005054184
## ... Procrustes: rmse 8.851716e-05 max resid 0.0001991554
## ... Similar to previous best
## Run 38 stress 0.005054194
## ... Procrustes: rmse 9.420253e-05 max resid 0.0002117475
## ... Similar to previous best
## Run 39 stress 0.005054157
## ... Procrustes: rmse 6.917544e-05 max resid 0.0001557887
## ... Similar to previous best
## Run 40 stress 0.005054232
## ... Procrustes: rmse 0.0001186899 max resid 0.000266887
## ... Similar to previous best
## Run 41 stress 0.353205
## Run 42 stress 0.005055532
## ... Procrustes: rmse 0.003185518 max resid 0.006831271
## ... Similar to previous best
## Run 43 stress 0.005060555
## ... Procrustes: rmse 0.004828228 max resid 0.01039114
## Run 44 stress 0.00505417
## ... Procrustes: rmse 7.861471e-05 max resid 0.000176904
## ... Similar to previous best
## Run 45 stress 0.005089771
## ... Procrustes: rmse 0.008603595 max resid 0.01875555
## Run 46 stress 0.00505426
## ... Procrustes: rmse 0.0001345309 max resid 0.0003024657
## ... Similar to previous best
## Run 47 stress 0.005054154
## ... Procrustes: rmse 6.633342e-05 max resid 0.0001494361
## ... Similar to previous best
## Run 48 stress 0.005110793
## ... Procrustes: rmse 0.01041828 max resid 0.02282806
## Run 49 stress 0.05243098
## Run 50 stress 0.00505428
## ... Procrustes: rmse 0.0001393166 max resid 0.0003137533
## ... Similar to previous best
## Run 51 stress 0.005055774
## ... Procrustes: rmse 0.003324946 max resid 0.007134057
## ... Similar to previous best
## Run 52 stress 0.05243084
## Run 53 stress 0.005112415
## ... Procrustes: rmse 0.01053927 max resid 0.0230995
## Run 54 stress 0.005054169
## ... Procrustes: rmse 7.512598e-05 max resid 0.0001693547
## ... Similar to previous best
## Run 55 stress 0.005054194
## ... Procrustes: rmse 9.47794e-05 max resid 0.0002131024
## ... Similar to previous best
## Run 56 stress 0.005060115
## ... Procrustes: rmse 0.004726201 max resid 0.01017068
## Run 57 stress 0.005066388
## ... Procrustes: rmse 0.005919796 max resid 0.01275863
## Run 58 stress 0.005068349
## ... Procrustes: rmse 0.006221396 max resid 0.01341754
## Run 59 stress 0.00505427
## ... Procrustes: rmse 0.0001362505 max resid 0.0003067884
## ... Similar to previous best
## Run 60 stress 0.00506582
## ... Procrustes: rmse 0.005828336 max resid 0.01255826
## Run 61 stress 0.05243114
## Run 62 stress 0.005065914
## ... Procrustes: rmse 0.005836974 max resid 0.01257773
## Run 63 stress 0.005056119
## ... Procrustes: rmse 0.003493178 max resid 0.007498571
## ... Similar to previous best
## Run 64 stress 0.005120313
## ... Procrustes: rmse 0.01109881 max resid 0.02435436
## Run 65 stress 0.05243079
## Run 66 stress 0.005054176
## ... Procrustes: rmse 8.234607e-05 max resid 0.0001854138
## ... Similar to previous best
## Run 67 stress 0.005054225
## ... Procrustes: rmse 0.0001124449 max resid 0.0002525262
## ... Similar to previous best
## Run 68 stress 0.005107008
## ... Procrustes: rmse 0.01013359 max resid 0.02218976
## Run 69 stress 0.005054213
## ... Procrustes: rmse 0.0001058128 max resid 0.0002377066
## ... Similar to previous best
## Run 70 stress 0.05243081
## Run 71 stress 0.005054258
## ... Procrustes: rmse 0.0001338184 max resid 0.0003009845
## ... Similar to previous best
## Run 72 stress 0.005101371
## ... Procrustes: rmse 0.009685922 max resid 0.02118637
## Run 73 stress 0.005054178
## ... Procrustes: rmse 8.304718e-05 max resid 0.0001866161
## ... Similar to previous best
## Run 74 stress 0.3531018
## Run 75 stress 0.005127047
## ... Procrustes: rmse 0.01154399 max resid 0.02535075
## Run 76 stress 0.005096157
## ... Procrustes: rmse 0.009250418 max resid 0.02020836
## Run 77 stress 0.052431
## Run 78 stress 0.005054219
## ... Procrustes: rmse 0.0001108059 max resid 0.0002492948
## ... Similar to previous best
## Run 79 stress 0.005054131
## ... Procrustes: rmse 0.0006429653 max resid 0.001438124
## ... Similar to previous best
## Run 80 stress 0.005116186
## ... Procrustes: rmse 0.0108096 max resid 0.02370615
## Run 81 stress 0.05243101
## Run 82 stress 0.00505755
## ... Procrustes: rmse 0.004032048 max resid 0.008666626
## ... Similar to previous best
## Run 83 stress 0.05243107
## Run 84 stress 0.05243101
## Run 85 stress 0.005078512
## ... Procrustes: rmse 0.007522418 max resid 0.01633265
## Run 86 stress 0.005054219
## ... Procrustes: rmse 0.0001111736 max resid 0.0002501498
## ... Similar to previous best
## Run 87 stress 0.005054084
## ... Procrustes: rmse 8.267743e-07 max resid 2.083359e-06
## ... Similar to previous best
## Run 88 stress 0.05243062
## Run 89 stress 0.005086029
## ... Procrustes: rmse 0.008315872 max resid 0.01811212
## Run 90 stress 0.05243091
## Run 91 stress 0.005118779
## ... Procrustes: rmse 0.01095071 max resid 0.02402048
## Run 92 stress 0.005058504
## ... Procrustes: rmse 0.004308292 max resid 0.009265863
## ... Similar to previous best
## Run 93 stress 0.005054201
## ... Procrustes: rmse 9.917223e-05 max resid 0.0002229909
## ... Similar to previous best
## Run 94 stress 0.005054166
## ... Procrustes: rmse 7.591163e-05 max resid 0.0001707877
## ... Similar to previous best
## Run 95 stress 0.05243092
## Run 96 stress 0.3531018
## Run 97 stress 0.005054172
## ... Procrustes: rmse 7.990962e-05 max resid 0.0001798389
## ... Similar to previous best
## Run 98 stress 0.005054206
## ... Procrustes: rmse 0.0001029083 max resid 0.0002314247
## ... Similar to previous best
## Run 99 stress 0.005054153
## ... Procrustes: rmse 6.61301e-05 max resid 0.0001488365
## ... Similar to previous best
## Run 100 stress 0.005054216
## ... Procrustes: rmse 0.0001089976 max resid 0.0002450445
## ... Similar to previous best
## Run 101 stress 0.005067044
## ... Procrustes: rmse 0.006000418 max resid 0.01292964
## Run 102 stress 0.005054218
## ... Procrustes: rmse 0.0001105201 max resid 0.0002486616
## ... Similar to previous best
## Run 103 stress 0.3437875
## Run 104 stress 0.005054226
## ... Procrustes: rmse 0.0001152011 max resid 0.0002591429
## ... Similar to previous best
## Run 105 stress 0.05243118
## Run 106 stress 0.05243099
## Run 107 stress 0.005071075
## ... Procrustes: rmse 0.006605831 max resid 0.01427594
## Run 108 stress 0.005055675
## ... Procrustes: rmse 0.003267649 max resid 0.007010087
## ... Similar to previous best
## Run 109 stress 0.005099747
## ... Procrustes: rmse 0.009549871 max resid 0.02088072
## Run 110 stress 0.005054249
## ... Procrustes: rmse 0.0001233329 max resid 0.0002767498
## ... Similar to previous best
## Run 111 stress 0.005088328
## ... Procrustes: rmse 0.008528514 max resid 0.01858943
## Run 112 stress 0.005078261
## ... Procrustes: rmse 0.007489519 max resid 0.01625917
## Run 113 stress 0.005112175
## ... Procrustes: rmse 0.01051387 max resid 0.02304332
## Run 114 stress 0.05243093
## Run 115 stress 0.05243103
## Run 116 stress 0.005121053
## ... Procrustes: rmse 0.01113087 max resid 0.02442458
## Run 117 stress 0.005054167
## ... Procrustes: rmse 7.649957e-05 max resid 0.0001722337
## ... Similar to previous best
## Run 118 stress 0.005059726
## ... Procrustes: rmse 0.004634215 max resid 0.009970789
## ... Similar to previous best
## Run 119 stress 0.005108833
## ... Procrustes: rmse 0.01027346 max resid 0.02250369
## Run 120 stress 0.05243086
## Run 121 stress 0.05243096
## Run 122 stress 0.005054226
## ... Procrustes: rmse 0.0001143907 max resid 0.0002574822
## ... Similar to previous best
## Run 123 stress 0.00510159
## ... Procrustes: rmse 0.009447195 max resid 0.02064333
## Run 124 stress 0.05243087
## Run 125 stress 0.05243084
## Run 126 stress 0.005090093
## ... Procrustes: rmse 0.008623159 max resid 0.0188024
## Run 127 stress 0.005054211
## ... Procrustes: rmse 0.0001053423 max resid 0.0002371395
## ... Similar to previous best
## Run 128 stress 0.05243085
## Run 129 stress 0.00512286
## ... Procrustes: rmse 0.01126677 max resid 0.02472969
## Run 130 stress 0.005054155
## ... Procrustes: rmse 6.711576e-05 max resid 0.0001511932
## ... Similar to previous best
## Run 131 stress 0.005054211
## ... Procrustes: rmse 9.842289e-05 max resid 0.000221828
## ... Similar to previous best
## Run 132 stress 0.05243101
## Run 133 stress 0.05243114
## Run 134 stress 0.005054151
## ... Procrustes: rmse 6.447745e-05 max resid 0.0001452578
## ... Similar to previous best
## Run 135 stress 0.005107173
## ... Procrustes: rmse 0.01014653 max resid 0.02221882
## Run 136 stress 0.005054186
## ... Procrustes: rmse 8.90159e-05 max resid 0.0002001109
## ... Similar to previous best
## Run 137 stress 0.005110297
## ... Procrustes: rmse 0.0103642 max resid 0.02270801
## Run 138 stress 0.005071646
## ... Procrustes: rmse 0.006674639 max resid 0.01443106
## Run 139 stress 0.005075514
## ... Procrustes: rmse 0.007170395 max resid 0.0155427
## Run 140 stress 0.005054241
## ... Procrustes: rmse 0.000117816 max resid 0.0002643132
## ... Similar to previous best
## Run 141 stress 0.005061316
## ... Procrustes: rmse 0.004995042 max resid 0.01075236
## Run 142 stress 0.06465863
## Run 143 stress 0.005054168
## ... Procrustes: rmse 7.434195e-05 max resid 0.0001668879
## ... Similar to previous best
## Run 144 stress 0.05243094
## Run 145 stress 0.0524309
## Run 146 stress 0.005054402
## ... Procrustes: rmse 0.001628104 max resid 0.003439286
## ... Similar to previous best
## Run 147 stress 0.005054166
## ... Procrustes: rmse 7.590076e-05 max resid 0.0001708922
## ... Similar to previous best
## Run 148 stress 0.005107137
## ... Procrustes: rmse 0.01014342 max resid 0.02221217
## Run 149 stress 0.00505424
## ... Procrustes: rmse 0.0001188845 max resid 0.0002668323
## ... Similar to previous best
## Run 150 stress 0.005056282
## ... Procrustes: rmse 0.003462504 max resid 0.007430325
## ... Similar to previous best
## Run 151 stress 0.005054114
## ... Procrustes: rmse 3.269097e-05 max resid 7.383595e-05
## ... Similar to previous best
## Run 152 stress 0.005054204
## ... Procrustes: rmse 0.0001014003 max resid 0.000228057
## ... Similar to previous best
## Run 153 stress 0.005055426
## ... Procrustes: rmse 0.003124097 max resid 0.006698759
## ... Similar to previous best
## Run 154 stress 0.005064525
## ... Procrustes: rmse 0.005609046 max resid 0.01208269
## Run 155 stress 0.005054177
## ... Procrustes: rmse 8.100143e-05 max resid 0.0001819087
## ... Similar to previous best
## Run 156 stress 0.005075512
## ... Procrustes: rmse 0.007172429 max resid 0.01554748
## Run 157 stress 0.005054209
## ... Procrustes: rmse 0.0001032685 max resid 0.000232023
## ... Similar to previous best
## Run 158 stress 0.005054132
## ... Procrustes: rmse 4.84698e-05 max resid 0.0001093162
## ... Similar to previous best
## Run 159 stress 0.005054132
## ... Procrustes: rmse 4.713081e-05 max resid 0.000105871
## ... Similar to previous best
## Run 160 stress 0.06376753
## Run 161 stress 0.052431
## Run 162 stress 0.005054217
## ... Procrustes: rmse 0.0001063946 max resid 0.0002388619
## ... Similar to previous best
## Run 163 stress 0.005055477
## ... Procrustes: rmse 0.00315844 max resid 0.006773023
## ... Similar to previous best
## Run 164 stress 0.005054226
## ... Procrustes: rmse 0.0001155252 max resid 0.0002598566
## ... Similar to previous best
## Run 165 stress 0.005054219
## ... Procrustes: rmse 0.0001112187 max resid 0.0002501906
## ... Similar to previous best
## Run 166 stress 0.005054202
## ... Procrustes: rmse 9.999657e-05 max resid 0.0002251115
## ... Similar to previous best
## Run 167 stress 0.005054169
## ... Procrustes: rmse 7.787425e-05 max resid 0.0001753306
## ... Similar to previous best
## Run 168 stress 0.05243072
## Run 169 stress 0.005054232
## ... Procrustes: rmse 0.0001187099 max resid 0.0002668458
## ... Similar to previous best
## Run 170 stress 0.005054257
## ... Procrustes: rmse 0.0001309194 max resid 0.0002940419
## ... Similar to previous best
## Run 171 stress 0.005069882
## ... Procrustes: rmse 0.006420908 max resid 0.01386165
## Run 172 stress 0.05243065
## Run 173 stress 0.005085572
## ... Procrustes: rmse 0.008143312 max resid 0.01772673
## Run 174 stress 0.005103006
## ... Procrustes: rmse 0.00981958 max resid 0.02148541
## Run 175 stress 0.005118166
## ... Procrustes: rmse 0.01090479 max resid 0.02392055
## Run 176 stress 0.05243073
## Run 177 stress 0.00512091
## ... Procrustes: rmse 0.0111417 max resid 0.02444989
## Run 178 stress 0.005054187
## ... Procrustes: rmse 8.994665e-05 max resid 0.0002025403
## ... Similar to previous best
## Run 179 stress 0.005088414
## ... Procrustes: rmse 0.008546448 max resid 0.01862933
## Run 180 stress 0.05243062
## Run 181 stress 0.005054151
## ... Procrustes: rmse 6.406633e-05 max resid 0.0001440898
## ... Similar to previous best
## Run 182 stress 0.005054183
## ... Procrustes: rmse 8.761697e-05 max resid 0.0001972061
## ... Similar to previous best
## Run 183 stress 0.00505407
## ... New best solution
## ... Procrustes: rmse 1.816451e-05 max resid 3.987925e-05
## ... Similar to previous best
## Run 184 stress 0.005054168
## ... Procrustes: rmse 9.545796e-05 max resid 0.0002138733
## ... Similar to previous best
## Run 185 stress 0.005089553
## ... Procrustes: rmse 0.008635901 max resid 0.01883017
## Run 186 stress 0.005110447
## ... Procrustes: rmse 0.01037395 max resid 0.02272936
## Run 187 stress 0.05243086
## Run 188 stress 0.00506254
## ... Procrustes: rmse 0.005226267 max resid 0.01125377
## Run 189 stress 0.00506044
## ... Procrustes: rmse 0.004774464 max resid 0.01027499
## Run 190 stress 0.05243129
## Run 191 stress 0.06376734
## Run 192 stress 0.005084873
## ... Procrustes: rmse 0.008134456 max resid 0.01770475
## Run 193 stress 0.05243068
## Run 194 stress 0.005054266
## ... Procrustes: rmse 0.000151446 max resid 0.000339049
## ... Similar to previous best
## Run 195 stress 0.005057626
## ... Procrustes: rmse 0.004038434 max resid 0.008679514
## ... Similar to previous best
## Run 196 stress 0.005076015
## ... Procrustes: rmse 0.007213795 max resid 0.01564092
## Run 197 stress 0.005107757
## ... Procrustes: rmse 0.01017006 max resid 0.0222721
## Run 198 stress 0.05243078
## Run 199 stress 0.00508237
## ... Procrustes: rmse 0.007916018 max resid 0.0172156
## Run 200 stress 0.06337814
## Run 201 stress 0.005054227
## ... Procrustes: rmse 0.0001340535 max resid 0.0003006241
## ... Similar to previous best
## Run 202 stress 0.005101671
## ... Procrustes: rmse 0.009693814 max resid 0.02120402
## Run 203 stress 0.005054243
## ... Procrustes: rmse 0.0001428595 max resid 0.0003201637
## ... Similar to previous best
## Run 204 stress 0.05243098
## Run 205 stress 0.005054268
## ... Procrustes: rmse 0.0001568895 max resid 0.0003517392
## ... Similar to previous best
## Run 206 stress 0.005054177
## ... Procrustes: rmse 0.0001016271 max resid 0.0002276947
## ... Similar to previous best
## Run 207 stress 0.005054253
## ... Procrustes: rmse 0.0001488207 max resid 0.0003336799
## ... Similar to previous best
## Run 208 stress 0.005055769
## ... Procrustes: rmse 0.003297824 max resid 0.007074059
## ... Similar to previous best
## Run 209 stress 0.0524307
## Run 210 stress 0.005118428
## ... Procrustes: rmse 0.01095234 max resid 0.02402659
## Run 211 stress 0.005099182
## ... Procrustes: rmse 0.009371287 max resid 0.02048225
## Run 212 stress 0.005055518
## ... Procrustes: rmse 0.003164931 max resid 0.00678675
## ... Similar to previous best
## Run 213 stress 0.2027814
## Run 214 stress 0.0633782
## Run 215 stress 0.005110454
## ... Procrustes: rmse 0.01037732 max resid 0.0227373
## Run 216 stress 0.005105911
## ... Procrustes: rmse 0.009991172 max resid 0.02187311
## Run 217 stress 0.005073428
## ... Procrustes: rmse 0.006893216 max resid 0.01492151
## Run 218 stress 0.005054212
## ... Procrustes: rmse 0.0001246801 max resid 0.0002795758
## ... Similar to previous best
## Run 219 stress 0.005070988
## ... Procrustes: rmse 0.006575988 max resid 0.01420998
## Run 220 stress 0.005065208
## ... Procrustes: rmse 0.005701781 max resid 0.01228236
## Run 221 stress 0.005054169
## ... Procrustes: rmse 9.536935e-05 max resid 0.0002132572
## ... Similar to previous best
## Run 222 stress 0.00505423
## ... Procrustes: rmse 0.0001261941 max resid 0.0002834361
## ... Similar to previous best
## Run 223 stress 0.005058586
## ... Procrustes: rmse 0.004322489 max resid 0.009295212
## ... Similar to previous best
## Run 224 stress 0.05243107
## Run 225 stress 0.00505577
## ... Procrustes: rmse 0.003298363 max resid 0.007076075
## ... Similar to previous best
## Run 226 stress 0.005054095
## ... Procrustes: rmse 3.133047e-05 max resid 6.977069e-05
## ... Similar to previous best
## Run 227 stress 0.005109088
## ... Procrustes: rmse 0.0102746 max resid 0.02250689
## Run 228 stress 0.005056039
## ... Procrustes: rmse 0.003437952 max resid 0.007378302
## ... Similar to previous best
## Run 229 stress 0.005054245
## ... Procrustes: rmse 0.0001389552 max resid 0.0003120267
## ... Similar to previous best
## Run 230 stress 0.005054167
## ... Procrustes: rmse 8.98095e-05 max resid 0.0002015333
## ... Similar to previous best
## Run 231 stress 0.005054091
## ... Procrustes: rmse 2.716238e-05 max resid 6.041963e-05
## ... Similar to previous best
## Run 232 stress 0.005054241
## ... Procrustes: rmse 0.0001417859 max resid 0.0003178234
## ... Similar to previous best
## Run 233 stress 0.005069264
## ... Procrustes: rmse 0.006298443 max resid 0.01358597
## Run 234 stress 0.005055611
## ... Procrustes: rmse 0.00321673 max resid 0.006898454
## ... Similar to previous best
## Run 235 stress 0.005054253
## ... Procrustes: rmse 0.0001427363 max resid 0.0003205551
## ... Similar to previous best
## Run 236 stress 0.3531018
## Run 237 stress 0.005055927
## ... Procrustes: rmse 0.003354838 max resid 0.00719718
## ... Similar to previous best
## Run 238 stress 0.05243089
## Run 239 stress 0.005061784
## ... Procrustes: rmse 0.00498197 max resid 0.01072095
## Run 240 stress 0.005054166
## ... Procrustes: rmse 9.045886e-05 max resid 0.0002021769
## ... Similar to previous best
## Run 241 stress 0.005054129
## ... Procrustes: rmse 6.480934e-05 max resid 0.0001450625
## ... Similar to previous best
## Run 242 stress 0.005054109
## ... Procrustes: rmse 4.556232e-05 max resid 0.0001016456
## ... Similar to previous best
## Run 243 stress 0.005062024
## ... Procrustes: rmse 0.005123939 max resid 0.01103119
## Run 244 stress 0.005054167
## ... Procrustes: rmse 9.45266e-05 max resid 0.0002118228
## ... Similar to previous best
## Run 245 stress 0.005054241
## ... Procrustes: rmse 0.0001422048 max resid 0.0003189215
## ... Similar to previous best
## Run 246 stress 0.005103426
## ... Procrustes: rmse 0.009824388 max resid 0.02149795
## Run 247 stress 0.005054266
## ... Procrustes: rmse 0.000152364 max resid 0.0003421049
## ... Similar to previous best
## Run 248 stress 0.005122746
## ... Procrustes: rmse 0.01124942 max resid 0.02469233
## Run 249 stress 0.005054195
## ... Procrustes: rmse 0.0001097485 max resid 0.0002463299
## ... Similar to previous best
## Run 250 stress 0.00512159
## ... Procrustes: rmse 0.0111648 max resid 0.0245032
## Run 251 stress 0.005077994
## ... Procrustes: rmse 0.007407298 max resid 0.01607417
## Run 252 stress 0.05243105
## Run 253 stress 0.005054186
## ... Procrustes: rmse 0.0001037082 max resid 0.00023276
## ... Similar to previous best
## Run 254 stress 0.05243105
## Run 255 stress 0.005054191
## ... Procrustes: rmse 0.0001055792 max resid 0.0002359868
## ... Similar to previous best
## Run 256 stress 0.005054137
## ... Procrustes: rmse 7.034412e-05 max resid 0.0001572625
## ... Similar to previous best
## Run 257 stress 0.3335291
## Run 258 stress 0.005054209
## ... Procrustes: rmse 0.0001185302 max resid 0.0002660918
## ... Similar to previous best
## Run 259 stress 0.0524311
## Run 260 stress 0.005097223
## ... Procrustes: rmse 0.009323997 max resid 0.02037428
## Run 261 stress 0.005054253
## ... Procrustes: rmse 0.0001489922 max resid 0.0003341914
## ... Similar to previous best
## Run 262 stress 0.05243072
## Run 263 stress 0.05243072
## Run 264 stress 0.005110452
## ... Procrustes: rmse 0.0103762 max resid 0.02273458
## Run 265 stress 0.05243102
## Run 266 stress 0.005106842
## ... Procrustes: rmse 0.01009698 max resid 0.02210909
## Run 267 stress 0.005054184
## ... Procrustes: rmse 0.0001063393 max resid 0.0002383719
## ... Similar to previous best
## Run 268 stress 0.005054237
## ... Procrustes: rmse 0.0001374666 max resid 0.0003078211
## ... Similar to previous best
## Run 269 stress 0.005057422
## ... Procrustes: rmse 0.003972629 max resid 0.008537091
## ... Similar to previous best
## Run 270 stress 0.05243073
## Run 271 stress 0.05243109
## Run 272 stress 0.005054234
## ... Procrustes: rmse 0.0001380387 max resid 0.000309398
## ... Similar to previous best
## Run 273 stress 0.05243104
## Run 274 stress 0.052431
## Run 275 stress 0.05243063
## Run 276 stress 0.005095767
## ... Procrustes: rmse 0.009193886 max resid 0.02008331
## Run 277 stress 0.005054269
## ... Procrustes: rmse 0.0001553897 max resid 0.0003488486
## ... Similar to previous best
## Run 278 stress 0.005054241
## ... Procrustes: rmse 0.0001380028 max resid 0.000309857
## ... Similar to previous best
## Run 279 stress 0.0050542
## ... Procrustes: rmse 0.0001158554 max resid 0.0002599304
## ... Similar to previous best
## Run 280 stress 0.005113254
## ... Procrustes: rmse 0.01058335 max resid 0.02319915
## Run 281 stress 0.005054237
## ... Procrustes: rmse 0.0001348728 max resid 0.0003018347
## ... Similar to previous best
## Run 282 stress 0.005096134
## ... Procrustes: rmse 0.00923039 max resid 0.02016438
## Run 283 stress 0.005054187
## ... Procrustes: rmse 0.0001057113 max resid 0.0002365132
## ... Similar to previous best
## Run 284 stress 0.005055559
## ... Procrustes: rmse 0.003188924 max resid 0.006838498
## ... Similar to previous best
## Run 285 stress 0.005054235
## ... Procrustes: rmse 0.0001380682 max resid 0.0003093713
## ... Similar to previous best
## Run 286 stress 0.005054119
## ... Procrustes: rmse 5.58397e-05 max resid 0.0001247772
## ... Similar to previous best
## Run 287 stress 0.005054229
## ... Procrustes: rmse 0.0001353727 max resid 0.0003034743
## ... Similar to previous best
## Run 288 stress 0.00511006
## ... Procrustes: rmse 0.01034755 max resid 0.0226713
## Run 289 stress 0.00505422
## ... Procrustes: rmse 0.0001261642 max resid 0.0002823828
## ... Similar to previous best
## Run 290 stress 0.005054131
## ... Procrustes: rmse 6.427024e-05 max resid 0.0001643459
## ... Similar to previous best
## Run 291 stress 0.052431
## Run 292 stress 0.005111965
## ... Procrustes: rmse 0.01046993 max resid 0.022944
## Run 293 stress 0.00509695
## ... Procrustes: rmse 0.009283382 max resid 0.02028268
## Run 294 stress 0.005104989
## ... Procrustes: rmse 0.009955867 max resid 0.02179263
## Run 295 stress 0.005085211
## ... Procrustes: rmse 0.00821582 max resid 0.01788855
## Run 296 stress 0.06337842
## Run 297 stress 0.005097615
## ... Procrustes: rmse 0.009347867 max resid 0.02042841
## Run 298 stress 0.005054154
## ... Procrustes: rmse 8.398295e-05 max resid 0.0001879267
## ... Similar to previous best
## Run 299 stress 0.0524307
## Run 300 stress 0.005054144
## ... Procrustes: rmse 7.575709e-05 max resid 0.0001697968
## ... Similar to previous best
## Run 301 stress 0.005060467
## ... Procrustes: rmse 0.004783581 max resid 0.01029332
## Run 302 stress 0.005054226
## ... Procrustes: rmse 0.0001336391 max resid 0.0002996029
## ... Similar to previous best
## Run 303 stress 0.005116438
## ... Procrustes: rmse 0.01081192 max resid 0.02371188
## Run 304 stress 0.005070189
## ... Procrustes: rmse 0.006463795 max resid 0.01395776
## Run 305 stress 0.005086501
## ... Procrustes: rmse 0.008302532 max resid 0.01808407
## Run 306 stress 0.005134687
## ... Procrustes: rmse 0.01200185 max resid 0.02637651
## Run 307 stress 0.005066231
## ... Procrustes: rmse 0.005876989 max resid 0.01266334
## Run 308 stress 0.00509281
## ... Procrustes: rmse 0.008898031 max resid 0.01941547
## Run 309 stress 0.00509896
## ... Procrustes: rmse 0.009467168 max resid 0.02069598
## Run 310 stress 0.00505425
## ... Procrustes: rmse 0.0001438288 max resid 0.0003220605
## ... Similar to previous best
## Run 311 stress 0.005054191
## ... Procrustes: rmse 0.0001114826 max resid 0.0002498581
## ... Similar to previous best
## Run 312 stress 0.005054268
## ... Procrustes: rmse 0.0001531053 max resid 0.0003438038
## ... Similar to previous best
## Run 313 stress 0.005054198
## ... Procrustes: rmse 0.000115541 max resid 0.0002590928
## ... Similar to previous best
## Run 314 stress 0.005079171
## ... Procrustes: rmse 0.007564144 max resid 0.01642752
## Run 315 stress 0.005118329
## ... Procrustes: rmse 0.01082225 max resid 0.02373707
## Run 316 stress 0.005054151
## ... Procrustes: rmse 8.203735e-05 max resid 0.0001835323
## ... Similar to previous best
## Run 317 stress 0.05243085
## Run 318 stress 0.005061418
## ... Procrustes: rmse 0.004999367 max resid 0.01076137
## Run 319 stress 0.005063375
## ... Procrustes: rmse 0.005384565 max resid 0.01159634
## Run 320 stress 0.005063394
## ... Procrustes: rmse 0.0053859 max resid 0.01159823
## Run 321 stress 0.005097959
## ... Procrustes: rmse 0.009386485 max resid 0.0205145
## Run 322 stress 0.05243113
## Run 323 stress 0.005054177
## ... Procrustes: rmse 0.0001015621 max resid 0.0002276492
## ... Similar to previous best
## Run 324 stress 0.00511202
## ... Procrustes: rmse 0.01049334 max resid 0.02299755
## Run 325 stress 0.005054181
## ... Procrustes: rmse 0.0001046555 max resid 0.0002344589
## ... Similar to previous best
## Run 326 stress 0.005054218
## ... Procrustes: rmse 0.0001281005 max resid 0.000287298
## ... Similar to previous best
## Run 327 stress 0.005054237
## ... Procrustes: rmse 0.0001398391 max resid 0.0003135999
## ... Similar to previous best
## Run 328 stress 0.005055522
## ... Procrustes: rmse 0.00316767 max resid 0.006792366
## ... Similar to previous best
## Run 329 stress 0.05243093
## Run 330 stress 0.0524307
## Run 331 stress 0.00511562
## ... Procrustes: rmse 0.01074146 max resid 0.02355482
## Run 332 stress 0.005054092
## ... Procrustes: rmse 2.878279e-05 max resid 6.401527e-05
## ... Similar to previous best
## Run 333 stress 0.05243103
## Run 334 stress 0.005054193
## ... Procrustes: rmse 0.0001085944 max resid 0.0002428937
## ... Similar to previous best
## Run 335 stress 0.005054143
## ... Procrustes: rmse 7.645842e-05 max resid 0.0001712438
## ... Similar to previous best
## Run 336 stress 0.005065722
## ... Procrustes: rmse 0.005726815 max resid 0.01233883
## Run 337 stress 0.00506689
## ... Procrustes: rmse 0.00598101 max resid 0.01288991
## Run 338 stress 0.05243115
## Run 339 stress 0.05243077
## Run 340 stress 0.005076034
## ... Procrustes: rmse 0.0072152 max resid 0.0156444
## Run 341 stress 0.005054178
## ... Procrustes: rmse 0.0001013582 max resid 0.0002273289
## ... Similar to previous best
## Run 342 stress 0.005054199
## ... Procrustes: rmse 0.00011078 max resid 0.0002476391
## ... Similar to previous best
## Run 343 stress 0.005054087
## ... Procrustes: rmse 2.205534e-05 max resid 4.895037e-05
## ... Similar to previous best
## Run 344 stress 0.005054144
## ... Procrustes: rmse 7.733124e-05 max resid 0.0001730859
## ... Similar to previous best
## Run 345 stress 0.005054179
## ... Procrustes: rmse 0.0001021613 max resid 0.0002287022
## ... Similar to previous best
## Run 346 stress 0.005054274
## ... Procrustes: rmse 0.0001551161 max resid 0.0003472484
## ... Similar to previous best
## Run 347 stress 0.00505425
## ... Procrustes: rmse 0.0001448265 max resid 0.0003251159
## ... Similar to previous best
## Run 348 stress 0.005054069
## ... New best solution
## ... Procrustes: rmse 0.00029802 max resid 0.0006834959
## ... Similar to previous best
## Run 349 stress 0.05243064
## Run 350 stress 0.005054195
## ... Procrustes: rmse 0.0004117969 max resid 0.0009394717
## ... Similar to previous best
## Run 351 stress 0.05243067
## Run 352 stress 0.005054281
## ... Procrustes: rmse 0.00045634 max resid 0.001039226
## ... Similar to previous best
## Run 353 stress 0.005074916
## ... Procrustes: rmse 0.006412969 max resid 0.01382953
## Run 354 stress 0.005084149
## ... Procrustes: rmse 0.00780974 max resid 0.01696153
## Run 355 stress 0.05243062
## Run 356 stress 0.05243106
## Run 357 stress 0.005054197
## ... Procrustes: rmse 0.0004125722 max resid 0.0009412704
## ... Similar to previous best
## Run 358 stress 0.05243095
## Run 359 stress 0.0646585
## Run 360 stress 0.005054188
## ... Procrustes: rmse 0.0004067662 max resid 0.0009282355
## ... Similar to previous best
## Run 361 stress 0.005095248
## ... Procrustes: rmse 0.008844535 max resid 0.01928353
## Run 362 stress 0.00505422
## ... Procrustes: rmse 0.0004232368 max resid 0.0009647524
## ... Similar to previous best
## Run 363 stress 0.005054262
## ... Procrustes: rmse 0.0004450569 max resid 0.001015068
## ... Similar to previous best
## Run 364 stress 0.005098773
## ... Procrustes: rmse 0.009141563 max resid 0.01994906
## Run 365 stress 0.005086492
## ... Procrustes: rmse 0.008012479 max resid 0.01741448
## Run 366 stress 0.00510561
## ... Procrustes: rmse 0.009703814 max resid 0.02121068
## Run 367 stress 0.005074316
## ... Procrustes: rmse 0.00670979 max resid 0.0144942
## Run 368 stress 0.005055369
## ... Procrustes: rmse 0.002771997 max resid 0.005892944
## ... Similar to previous best
## Run 369 stress 0.00510598
## ... Procrustes: rmse 0.009739291 max resid 0.02129091
## Run 370 stress 0.00505421
## ... Procrustes: rmse 0.000418079 max resid 0.000953211
## ... Similar to previous best
## Run 371 stress 0.06376745
## Run 372 stress 0.00505421
## ... Procrustes: rmse 0.0004208502 max resid 0.0009599588
## ... Similar to previous best
## Run 373 stress 0.005054102
## ... Procrustes: rmse 0.0003363575 max resid 0.0007691991
## ... Similar to previous best
## Run 374 stress 0.005112621
## ... Procrustes: rmse 0.01024015 max resid 0.02241419
## Run 375 stress 0.05243084
## Run 376 stress 0.005080704
## ... Procrustes: rmse 0.007449688 max resid 0.01615424
## Run 377 stress 0.005110846
## ... Procrustes: rmse 0.009946594 max resid 0.02175812
## Run 378 stress 0.005121628
## ... Procrustes: rmse 0.0108762 max resid 0.02383989
## Run 379 stress 0.005075332
## ... Procrustes: rmse 0.006833681 max resid 0.01477255
## Run 380 stress 0.005065616
## ... Procrustes: rmse 0.005477653 max resid 0.01175808
## Run 381 stress 0.005104728
## ... Procrustes: rmse 0.009640927 max resid 0.02107025
## Run 382 stress 0.005054251
## ... Procrustes: rmse 0.0004397514 max resid 0.001003082
## ... Similar to previous best
## Run 383 stress 0.005062542
## ... Procrustes: rmse 0.004929503 max resid 0.01057072
## Run 384 stress 0.005129272
## ... Procrustes: rmse 0.01138134 max resid 0.02497219
## Run 385 stress 0.005054174
## ... Procrustes: rmse 0.0003968319 max resid 0.0009056795
## ... Similar to previous best
## Run 386 stress 0.00505424
## ... Procrustes: rmse 0.0004337037 max resid 0.0009882291
## ... Similar to previous best
## Run 387 stress 0.005054234
## ... Procrustes: rmse 0.0004290074 max resid 0.0009776175
## ... Similar to previous best
## Run 388 stress 0.005086332
## ... Procrustes: rmse 0.008021259 max resid 0.01743666
## Run 389 stress 0.005096472
## ... Procrustes: rmse 0.008953636 max resid 0.01952894
## Run 390 stress 0.005071314
## ... Procrustes: rmse 0.006322002 max resid 0.01362432
## Run 391 stress 0.005054217
## ... Procrustes: rmse 0.0004220529 max resid 0.0009621508
## ... Similar to previous best
## Run 392 stress 0.05243107
## Run 393 stress 0.005094474
## ... Procrustes: rmse 0.008783213 max resid 0.01914651
## Run 394 stress 0.005054237
## ... Procrustes: rmse 0.0004371312 max resid 0.0009965459
## ... Similar to previous best
## Run 395 stress 0.05243094
## Run 396 stress 0.005054217
## ... Procrustes: rmse 0.0004249924 max resid 0.0009694018
## ... Similar to previous best
## Run 397 stress 0.005084636
## ... Procrustes: rmse 0.007861178 max resid 0.01707744
## Run 398 stress 0.005057473
## ... Procrustes: rmse 0.003673297 max resid 0.007850191
## ... Similar to previous best
## Run 399 stress 0.005125241
## ... Procrustes: rmse 0.01111954 max resid 0.02438525
## Run 400 stress 0.005102163
## ... Procrustes: rmse 0.009413266 max resid 0.0205585
## Run 401 stress 0.00505416
## ... Procrustes: rmse 0.0003871176 max resid 0.0008838599
## ... Similar to previous best
## Run 402 stress 0.005103672
## ... Procrustes: rmse 0.009549241 max resid 0.02086499
## Run 403 stress 0.005114148
## ... Procrustes: rmse 0.01031876 max resid 0.02258907
## Run 404 stress 0.005054102
## ... Procrustes: rmse 0.0003366528 max resid 0.0007701247
## ... Similar to previous best
## Run 405 stress 0.06465843
## Run 406 stress 0.005054153
## ... Procrustes: rmse 0.000381402 max resid 0.0008711028
## ... Similar to previous best
## Run 407 stress 0.005114387
## ... Procrustes: rmse 0.01024964 max resid 0.02243735
## Run 408 stress 0.005054235
## ... Procrustes: rmse 0.0004328659 max resid 0.0009865062
## ... Similar to previous best
## Run 409 stress 0.05243103
## Run 410 stress 0.005067099
## ... Procrustes: rmse 0.005716552 max resid 0.01227641
## Run 411 stress 0.05243098
## Run 412 stress 0.005112241
## ... Procrustes: rmse 0.01021187 max resid 0.02235084
## Run 413 stress 0.005073239
## ... Procrustes: rmse 0.006548239 max resid 0.01413107
## Run 414 stress 0.005058303
## ... Procrustes: rmse 0.00394587 max resid 0.008439931
## ... Similar to previous best
## Run 415 stress 0.005120911
## ... Procrustes: rmse 0.01082138 max resid 0.02371766
## Run 416 stress 0.005054294
## ... Procrustes: rmse 0.0004631386 max resid 0.001055777
## ... Similar to previous best
## Run 417 stress 0.005074804
## ... Procrustes: rmse 0.006594439 max resid 0.01423704
## Run 418 stress 0.005054101
## ... Procrustes: rmse 0.0003354259 max resid 0.0007673042
## ... Similar to previous best
## Run 419 stress 0.005054161
## ... Procrustes: rmse 0.000387876 max resid 0.0008855409
## ... Similar to previous best
## Run 420 stress 0.005067686
## ... Procrustes: rmse 0.005805585 max resid 0.01247098
## Run 421 stress 0.005065717
## ... Procrustes: rmse 0.005446334 max resid 0.01168792
## Run 422 stress 0.00506391
## ... Procrustes: rmse 0.005164461 max resid 0.01107827
## Run 423 stress 0.005054206
## ... Procrustes: rmse 0.0004186333 max resid 0.0009549237
## ... Similar to previous best
## Run 424 stress 0.05243097
## Run 425 stress 0.005075502
## ... Procrustes: rmse 0.006416693 max resid 0.01384155
## Run 426 stress 0.005054219
## ... Procrustes: rmse 0.0004235339 max resid 0.0009663901
## ... Similar to previous best
## Run 427 stress 0.06465848
## Run 428 stress 0.005116929
## ... Procrustes: rmse 0.01055011 max resid 0.02310912
## Run 429 stress 0.00505425
## ... Procrustes: rmse 0.0004403896 max resid 0.001003376
## ... Similar to previous best
## Run 430 stress 0.00505416
## ... Procrustes: rmse 0.000387058 max resid 0.0008838029
## ... Similar to previous best
## Run 431 stress 0.005063696
## ... Procrustes: rmse 0.00504974 max resid 0.01082844
## Run 432 stress 0.00505421
## ... Procrustes: rmse 0.0004205791 max resid 0.0009595031
## ... Similar to previous best
## Run 433 stress 0.00507444
## ... Procrustes: rmse 0.006724862 max resid 0.01452833
## Run 434 stress 0.05243087
## Run 435 stress 0.005054292
## ... Procrustes: rmse 0.0004613939 max resid 0.001050534
## ... Similar to previous best
## Run 436 stress 0.005054257
## ... Procrustes: rmse 0.000444071 max resid 0.001011631
## ... Similar to previous best
## Run 437 stress 0.005075211
## ... Procrustes: rmse 0.006817235 max resid 0.01473518
## Run 438 stress 0.005054188
## ... Procrustes: rmse 0.0004066945 max resid 0.0009279568
## ... Similar to previous best
## Run 439 stress 0.005055382
## ... Procrustes: rmse 0.002783543 max resid 0.00592062
## ... Similar to previous best
## Run 440 stress 0.005054235
## ... Procrustes: rmse 0.0004315557 max resid 0.0009845682
## ... Similar to previous best
## Run 441 stress 0.05243104
## Run 442 stress 0.005054227
## ... Procrustes: rmse 0.0004294084 max resid 0.0009795424
## ... Similar to previous best
## Run 443 stress 0.05243089
## Run 444 stress 0.05243092
## Run 445 stress 0.005054241
## ... Procrustes: rmse 0.0004395722 max resid 0.00100216
## ... Similar to previous best
## Run 446 stress 0.005089776
## ... Procrustes: rmse 0.008361112 max resid 0.01819828
## Run 447 stress 0.005054213
## ... Procrustes: rmse 0.0004161072 max resid 0.0009488624
## ... Similar to previous best
## Run 448 stress 0.005057771
## ... Procrustes: rmse 0.003787091 max resid 0.00809587
## ... Similar to previous best
## Run 449 stress 0.005055465
## ... Procrustes: rmse 0.002835763 max resid 0.006033822
## ... Similar to previous best
## Run 450 stress 0.005054194
## ... Procrustes: rmse 0.0004105465 max resid 0.0009368464
## ... Similar to previous best
## Run 451 stress 0.005054261
## ... Procrustes: rmse 0.0004477823 max resid 0.001021053
## ... Similar to previous best
## Run 452 stress 0.00509858
## ... Procrustes: rmse 0.009141562 max resid 0.01994963
## Run 453 stress 0.005054116
## ... Procrustes: rmse 0.0003507028 max resid 0.0007999657
## ... Similar to previous best
## Run 454 stress 0.005072887
## ... Procrustes: rmse 0.006525341 max resid 0.0140801
## Run 455 stress 0.005056468
## ... Procrustes: rmse 0.003326907 max resid 0.007098751
## ... Similar to previous best
## Run 456 stress 0.005054207
## ... Procrustes: rmse 0.0004164543 max resid 0.0009504083
## ... Similar to previous best
## Run 457 stress 0.00505421
## ... Procrustes: rmse 0.000420863 max resid 0.0009599988
## ... Similar to previous best
## Run 458 stress 0.005105024
## ... Procrustes: rmse 0.009664225 max resid 0.02112229
## Run 459 stress 0.00509376
## ... Procrustes: rmse 0.008712785 max resid 0.01898823
## Run 460 stress 0.005054101
## ... Procrustes: rmse 0.0003271975 max resid 0.0007122926
## ... Similar to previous best
## Run 461 stress 0.005065442
## ... Procrustes: rmse 0.005446621 max resid 0.01169123
## Run 462 stress 0.005054188
## ... Procrustes: rmse 0.0004068682 max resid 0.000928444
## ... Similar to previous best
## Run 463 stress 0.005054232
## ... Procrustes: rmse 0.0004341294 max resid 0.0009897407
## ... Similar to previous best
## Run 464 stress 0.005056539
## ... Procrustes: rmse 0.003354541 max resid 0.007158233
## ... Similar to previous best
## Run 465 stress 0.005090855
## ... Procrustes: rmse 0.008438935 max resid 0.01837376
## Run 466 stress 0.005054266
## ... Procrustes: rmse 0.0004490844 max resid 0.001024071
## ... Similar to previous best
## Run 467 stress 0.005054227
## ... Procrustes: rmse 0.0004312172 max resid 0.000983322
## ... Similar to previous best
## Run 468 stress 0.052431
## Run 469 stress 0.005088131
## ... Procrustes: rmse 0.008205163 max resid 0.01784862
## Run 470 stress 0.005054188
## ... Procrustes: rmse 0.0004067216 max resid 0.000927961
## ... Similar to previous best
## Run 471 stress 0.05243111
## Run 472 stress 0.005054077
## ... Procrustes: rmse 7.23991e-05 max resid 0.0001427199
## ... Similar to previous best
## Run 473 stress 0.005128036
## ... Procrustes: rmse 0.01108392 max resid 0.02430848
## Run 474 stress 0.00505425
## ... Procrustes: rmse 0.000438889 max resid 0.0009998913
## ... Similar to previous best
## Run 475 stress 0.005054134
## ... Procrustes: rmse 0.0003659292 max resid 0.0008362445
## ... Similar to previous best
## Run 476 stress 0.05243075
## Run 477 stress 0.00505416
## ... Procrustes: rmse 0.0003860713 max resid 0.000881749
## ... Similar to previous best
## Run 478 stress 0.005054255
## ... Procrustes: rmse 0.0004463488 max resid 0.001017642
## ... Similar to previous best
## Run 479 stress 0.005111975
## ... Procrustes: rmse 0.01019275 max resid 0.02230781
## Run 480 stress 0.005119298
## ... Procrustes: rmse 0.01070829 max resid 0.02346301
## Run 481 stress 0.05243095
## Run 482 stress 0.06465836
## Run 483 stress 0.005054195
## ... Procrustes: rmse 0.0004112341 max resid 0.0009382622
## ... Similar to previous best
## Run 484 stress 0.005086442
## ... Procrustes: rmse 0.007467122 max resid 0.01618842
## Run 485 stress 0.005054183
## ... Procrustes: rmse 0.0004016973 max resid 0.0009170599
## ... Similar to previous best
## Run 486 stress 0.005082596
## ... Procrustes: rmse 0.007649147 max resid 0.01660131
## Run 487 stress 0.05243079
## Run 488 stress 0.05243083
## Run 489 stress 0.005054177
## ... Procrustes: rmse 0.0003990565 max resid 0.0009107147
## ... Similar to previous best
## Run 490 stress 0.05243079
## Run 491 stress 0.005054278
## ... Procrustes: rmse 0.0004557899 max resid 0.001039155
## ... Similar to previous best
## Run 492 stress 0.005054255
## ... Procrustes: rmse 0.0004478735 max resid 0.001020868
## ... Similar to previous best
## Run 493 stress 0.05243109
## Run 494 stress 0.05243096
## Run 495 stress 0.005054207
## ... Procrustes: rmse 0.0004117522 max resid 0.0009389072
## ... Similar to previous best
## Run 496 stress 0.005054209
## ... Procrustes: rmse 0.0004206159 max resid 0.0009592771
## ... Similar to previous best
## Run 497 stress 0.005102611
## ... Procrustes: rmse 0.009461417 max resid 0.02066667
## Run 498 stress 0.005082745
## ... Procrustes: rmse 0.007664783 max resid 0.01663646
## Run 499 stress 0.005054207
## ... Procrustes: rmse 0.0004170806 max resid 0.0009517857
## ... Similar to previous best
## Run 500 stress 0.005054639
## ... Procrustes: rmse 0.001903383 max resid 0.004072042
## ... Similar to previous best
## *** Best solution repeated 69 times# Stratified lakes and ocean sites
envbso_NMDS <- metaMDS(envbso_dist, try = 1000, parallel = 4, previous.best, trymax = 500, maxit = 500)## Run 0 stress 0.006360832
## Run 1 stress 0.006341233
## ... New best solution
## ... Procrustes: rmse 0.005339532 max resid 0.01269859
## Run 2 stress 0.006341031
## ... New best solution
## ... Procrustes: rmse 0.0005446694 max resid 0.001242801
## ... Similar to previous best
## Run 3 stress 0.00635955
## ... Procrustes: rmse 0.005570204 max resid 0.01327888
## Run 4 stress 0.00634107
## ... Procrustes: rmse 2.599425e-05 max resid 5.814095e-05
## ... Similar to previous best
## Run 5 stress 0.006341303
## ... Procrustes: rmse 0.0005843981 max resid 0.001337154
## ... Similar to previous best
## Run 6 stress 0.006341005
## ... New best solution
## ... Procrustes: rmse 1.900599e-05 max resid 4.2389e-05
## ... Similar to previous best
## Run 7 stress 0.006341039
## ... Procrustes: rmse 2.494108e-05 max resid 5.561047e-05
## ... Similar to previous best
## Run 8 stress 0.006341145
## ... Procrustes: rmse 7.947033e-05 max resid 0.0001769269
## ... Similar to previous best
## Run 9 stress 0.006341012
## ... Procrustes: rmse 5.339213e-06 max resid 1.191913e-05
## ... Similar to previous best
## Run 10 stress 0.006352185
## ... Procrustes: rmse 0.003703467 max resid 0.008811059
## ... Similar to previous best
## Run 11 stress 0.006341078
## ... Procrustes: rmse 4.844109e-05 max resid 0.0001082495
## ... Similar to previous best
## Run 12 stress 0.006341041
## ... Procrustes: rmse 2.606469e-05 max resid 5.814721e-05
## ... Similar to previous best
## Run 13 stress 0.006359105
## ... Procrustes: rmse 0.00543374 max resid 0.01295259
## Run 14 stress 0.006360578
## ... Procrustes: rmse 0.005733048 max resid 0.01366957
## Run 15 stress 0.006341272
## ... Procrustes: rmse 0.0005488576 max resid 0.001255311
## ... Similar to previous best
## Run 16 stress 0.006341087
## ... Procrustes: rmse 5.497127e-05 max resid 0.0001229147
## ... Similar to previous best
## Run 17 stress 0.006348902
## ... Procrustes: rmse 0.002828324 max resid 0.006717614
## ... Similar to previous best
## Run 18 stress 0.006341062
## ... Procrustes: rmse 3.999003e-05 max resid 8.932939e-05
## ... Similar to previous best
## Run 19 stress 0.006342755
## ... Procrustes: rmse 0.001078643 max resid 0.002514592
## ... Similar to previous best
## Run 20 stress 0.00634101
## ... Procrustes: rmse 4.417696e-06 max resid 9.983733e-06
## ... Similar to previous best
## Run 21 stress 0.006340961
## ... New best solution
## ... Procrustes: rmse 3.83624e-05 max resid 8.850307e-05
## ... Similar to previous best
## Run 22 stress 0.006341042
## ... Procrustes: rmse 6.329018e-05 max resid 0.0001433155
## ... Similar to previous best
## Run 23 stress 0.006341004
## ... Procrustes: rmse 3.781094e-05 max resid 8.725517e-05
## ... Similar to previous best
## Run 24 stress 0.006341028
## ... Procrustes: rmse 5.545955e-05 max resid 0.0001261462
## ... Similar to previous best
## Run 25 stress 0.006363628
## ... Procrustes: rmse 0.006477657 max resid 0.01545606
## Run 26 stress 0.006341042
## ... Procrustes: rmse 6.44886e-05 max resid 0.000145861
## ... Similar to previous best
## Run 27 stress 0.006341287
## ... Procrustes: rmse 0.000515729 max resid 0.001182122
## ... Similar to previous best
## Run 28 stress 0.006361079
## ... Procrustes: rmse 0.00586794 max resid 0.01399425
## Run 29 stress 0.00636232
## ... Procrustes: rmse 0.005983644 max resid 0.01427138
## Run 30 stress 0.006363848
## ... Procrustes: rmse 0.006534025 max resid 0.01559128
## Run 31 stress 0.006363035
## ... Procrustes: rmse 0.006344772 max resid 0.01513738
## Run 32 stress 0.006341098
## ... Procrustes: rmse 9.582663e-05 max resid 0.0002129842
## ... Similar to previous best
## Run 33 stress 0.006352088
## ... Procrustes: rmse 0.003373887 max resid 0.008024128
## ... Similar to previous best
## Run 34 stress 0.006341154
## ... Procrustes: rmse 0.0001242915 max resid 0.0002763669
## ... Similar to previous best
## Run 35 stress 0.006341133
## ... Procrustes: rmse 0.000114977 max resid 0.0002556113
## ... Similar to previous best
## Run 36 stress 0.006341033
## ... Procrustes: rmse 5.8945e-05 max resid 0.0001338207
## ... Similar to previous best
## Run 37 stress 0.3578487
## Run 38 stress 0.006341053
## ... Procrustes: rmse 6.896622e-05 max resid 0.0001554792
## ... Similar to previous best
## Run 39 stress 0.006365091
## ... Procrustes: rmse 0.006819963 max resid 0.0162773
## Run 40 stress 0.006361623
## ... Procrustes: rmse 0.005986631 max resid 0.01427867
## Run 41 stress 0.006357498
## ... Procrustes: rmse 0.004986813 max resid 0.01188363
## Run 42 stress 0.006365078
## ... Procrustes: rmse 0.006816909 max resid 0.01626997
## Run 43 stress 0.00634108
## ... Procrustes: rmse 8.285305e-05 max resid 0.0001851408
## ... Similar to previous best
## Run 44 stress 0.006340999
## ... Procrustes: rmse 3.354283e-05 max resid 7.701507e-05
## ... Similar to previous best
## Run 45 stress 0.006341051
## ... Procrustes: rmse 7.096297e-05 max resid 0.0001601718
## ... Similar to previous best
## Run 46 stress 0.006341103
## ... Procrustes: rmse 0.0001028396 max resid 0.0002287891
## ... Similar to previous best
## Run 47 stress 0.006341166
## ... Procrustes: rmse 0.0001330682 max resid 0.0002958189
## ... Similar to previous best
## Run 48 stress 0.006341072
## ... Procrustes: rmse 7.943206e-05 max resid 0.0001778933
## ... Similar to previous best
## Run 49 stress 0.006341131
## ... Procrustes: rmse 0.0001177884 max resid 0.0002620439
## ... Similar to previous best
## Run 50 stress 0.006341102
## ... Procrustes: rmse 0.0001010924 max resid 0.0002248909
## ... Similar to previous best
## Run 51 stress 0.006365261
## ... Procrustes: rmse 0.006857424 max resid 0.0163672
## Run 52 stress 0.0063413
## ... Procrustes: rmse 0.0005091969 max resid 0.001177137
## ... Similar to previous best
## Run 53 stress 0.006361217
## ... Procrustes: rmse 0.005916304 max resid 0.01411016
## Run 54 stress 0.006341111
## ... Procrustes: rmse 0.000105772 max resid 0.0002353106
## ... Similar to previous best
## Run 55 stress 0.006340958
## ... New best solution
## ... Procrustes: rmse 3.36219e-06 max resid 8.027653e-06
## ... Similar to previous best
## Run 56 stress 0.006341058
## ... Procrustes: rmse 7.732279e-05 max resid 0.000174693
## ... Similar to previous best
## Run 57 stress 0.006341027
## ... Procrustes: rmse 5.667393e-05 max resid 0.0001295899
## ... Similar to previous best
## Run 58 stress 0.006341074
## ... Procrustes: rmse 8.754192e-05 max resid 0.0001964254
## ... Similar to previous best
## Run 59 stress 0.006341161
## ... Procrustes: rmse 0.0001366279 max resid 0.0003036717
## ... Similar to previous best
## Run 60 stress 0.006341017
## ... Procrustes: rmse 5.104927e-05 max resid 0.0001173074
## ... Similar to previous best
## Run 61 stress 0.006363252
## ... Procrustes: rmse 0.006392284 max resid 0.01525143
## Run 62 stress 0.006341069
## ... Procrustes: rmse 8.541321e-05 max resid 0.000191957
## ... Similar to previous best
## Run 63 stress 0.006341137
## ... Procrustes: rmse 0.0004217786 max resid 0.0009609929
## ... Similar to previous best
## Run 64 stress 0.006341049
## ... Procrustes: rmse 7.236959e-05 max resid 0.0001643475
## ... Similar to previous best
## Run 65 stress 0.006341133
## ... Procrustes: rmse 0.0001223268 max resid 0.0002719327
## ... Similar to previous best
## Run 66 stress 0.006362285
## ... Procrustes: rmse 0.00616319 max resid 0.0147021
## Run 67 stress 0.006363792
## ... Procrustes: rmse 0.006518116 max resid 0.01555323
## Run 68 stress 0.006341134
## ... Procrustes: rmse 0.0001228571 max resid 0.0002730913
## ... Similar to previous best
## Run 69 stress 0.006341084
## ... Procrustes: rmse 8.75419e-05 max resid 0.0001963767
## ... Similar to previous best
## Run 70 stress 0.006341154
## ... Procrustes: rmse 0.0001285922 max resid 0.0002857375
## ... Similar to previous best
## Run 71 stress 0.006340969
## ... Procrustes: rmse 5.852769e-06 max resid 1.149745e-05
## ... Similar to previous best
## Run 72 stress 0.006341026
## ... Procrustes: rmse 5.333427e-05 max resid 0.0001219274
## ... Similar to previous best
## Run 73 stress 0.006341181
## ... Procrustes: rmse 0.0001394905 max resid 0.0003098579
## ... Similar to previous best
## Run 74 stress 0.006341014
## ... Procrustes: rmse 4.852905e-05 max resid 0.0001117561
## ... Similar to previous best
## Run 75 stress 0.006340985
## ... Procrustes: rmse 2.326217e-05 max resid 5.362071e-05
## ... Similar to previous best
## Run 76 stress 0.006341031
## ... Procrustes: rmse 5.999731e-05 max resid 0.0001370501
## ... Similar to previous best
## Run 77 stress 0.00634106
## ... Procrustes: rmse 8.012211e-05 max resid 0.0001807912
## ... Similar to previous best
## Run 78 stress 0.006362529
## ... Procrustes: rmse 0.006223379 max resid 0.0148464
## Run 79 stress 0.006341149
## ... Procrustes: rmse 0.000130724 max resid 0.0002905851
## ... Similar to previous best
## Run 80 stress 0.006363022
## ... Procrustes: rmse 0.00633647 max resid 0.01511758
## Run 81 stress 0.006341087
## ... Procrustes: rmse 9.507377e-05 max resid 0.0002119124
## ... Similar to previous best
## Run 82 stress 0.006341065
## ... Procrustes: rmse 8.155203e-05 max resid 0.0001836977
## ... Similar to previous best
## Run 83 stress 0.006340994
## ... Procrustes: rmse 3.322505e-05 max resid 7.784195e-05
## ... Similar to previous best
## Run 84 stress 0.00634117
## ... Procrustes: rmse 0.0001333343 max resid 0.0002960814
## ... Similar to previous best
## Run 85 stress 0.006340955
## ... New best solution
## ... Procrustes: rmse 7.527062e-06 max resid 2.079951e-05
## ... Similar to previous best
## Run 86 stress 0.006341022
## ... Procrustes: rmse 6.107957e-05 max resid 0.0001462112
## ... Similar to previous best
## Run 87 stress 0.006341029
## ... Procrustes: rmse 6.574295e-05 max resid 0.0001565405
## ... Similar to previous best
## Run 88 stress 0.006366317
## ... Procrustes: rmse 0.007085309 max resid 0.01691453
## Run 89 stress 0.006341118
## ... Procrustes: rmse 0.000118489 max resid 0.000268102
## ... Similar to previous best
## Run 90 stress 0.006341003
## ... Procrustes: rmse 4.645752e-05 max resid 0.0001129485
## ... Similar to previous best
## Run 91 stress 0.006358833
## ... Procrustes: rmse 0.005330405 max resid 0.01270685
## Run 92 stress 0.006364245
## ... Procrustes: rmse 0.006617955 max resid 0.015793
## Run 93 stress 0.006341017
## ... Procrustes: rmse 5.693358e-05 max resid 0.0001367708
## ... Similar to previous best
## Run 94 stress 0.006341013
## ... Procrustes: rmse 5.285073e-05 max resid 0.0001274269
## ... Similar to previous best
## Run 95 stress 0.006341144
## ... Procrustes: rmse 0.0001344405 max resid 0.000300843
## ... Similar to previous best
## Run 96 stress 0.00636316
## ... Procrustes: rmse 0.006365688 max resid 0.01518794
## Run 97 stress 0.006341174
## ... Procrustes: rmse 0.0001475613 max resid 0.0003276332
## ... Similar to previous best
## Run 98 stress 0.006362364
## ... Procrustes: rmse 0.006179571 max resid 0.01474166
## Run 99 stress 0.006341107
## ... Procrustes: rmse 0.0001142411 max resid 0.0002594887
## ... Similar to previous best
## Run 100 stress 0.006341074
## ... Procrustes: rmse 9.467933e-05 max resid 0.0002191837
## ... Similar to previous best
## Run 101 stress 0.006341252
## ... Procrustes: rmse 0.0001819854 max resid 0.0004026054
## ... Similar to previous best
## Run 102 stress 0.006341028
## ... Procrustes: rmse 5.802653e-05 max resid 0.0001394093
## ... Similar to previous best
## Run 103 stress 0.006365116
## ... Procrustes: rmse 0.006817332 max resid 0.01627135
## Run 104 stress 0.006364282
## ... Procrustes: rmse 0.006611071 max resid 0.01577644
## Run 105 stress 0.006364573
## ... Procrustes: rmse 0.006690988 max resid 0.01596819
## Run 106 stress 0.006340967
## ... Procrustes: rmse 1.612449e-05 max resid 4.220703e-05
## ... Similar to previous best
## Run 107 stress 0.006341092
## ... Procrustes: rmse 0.0001049511 max resid 0.0002403349
## ... Similar to previous best
## Run 108 stress 0.006346541
## ... Procrustes: rmse 0.002130131 max resid 0.005050342
## ... Similar to previous best
## Run 109 stress 0.006341029
## ... Procrustes: rmse 6.314813e-05 max resid 0.0001505904
## ... Similar to previous best
## Run 110 stress 0.006341082
## ... Procrustes: rmse 9.960101e-05 max resid 0.0002293795
## ... Similar to previous best
## Run 111 stress 0.006341022
## ... Procrustes: rmse 5.466097e-05 max resid 0.0001315029
## ... Similar to previous best
## Run 112 stress 0.006341092
## ... Procrustes: rmse 0.0001058566 max resid 0.0002422665
## ... Similar to previous best
## Run 113 stress 0.006341069
## ... Procrustes: rmse 8.990145e-05 max resid 0.0002089152
## ... Similar to previous best
## Run 114 stress 0.006363822
## ... Procrustes: rmse 0.00651847 max resid 0.01555435
## Run 115 stress 0.006341109
## ... Procrustes: rmse 0.000114958 max resid 0.0002609759
## ... Similar to previous best
## Run 116 stress 0.00634112
## ... Procrustes: rmse 0.0001167664 max resid 0.0002646609
## ... Similar to previous best
## Run 117 stress 0.006340995
## ... Procrustes: rmse 3.991583e-05 max resid 9.798711e-05
## ... Similar to previous best
## Run 118 stress 0.006341123
## ... Procrustes: rmse 0.0001229093 max resid 0.0002772642
## ... Similar to previous best
## Run 119 stress 0.00634106
## ... Procrustes: rmse 8.572868e-05 max resid 0.0002001266
## ... Similar to previous best
## Run 120 stress 0.006364435
## ... Procrustes: rmse 0.006632002 max resid 0.0158267
## Run 121 stress 0.006363989
## ... Procrustes: rmse 0.006557855 max resid 0.01564882
## Run 122 stress 0.006341076
## ... Procrustes: rmse 9.602097e-05 max resid 0.0002219762
## ... Similar to previous best
## Run 123 stress 0.006363602
## ... Procrustes: rmse 0.006468752 max resid 0.01543511
## Run 124 stress 0.006341004
## ... Procrustes: rmse 4.71482e-05 max resid 0.0001157233
## ... Similar to previous best
## Run 125 stress 0.006365217
## ... Procrustes: rmse 0.006820899 max resid 0.01627992
## Run 126 stress 0.006341314
## ... Procrustes: rmse 0.0005121002 max resid 0.001176211
## ... Similar to previous best
## Run 127 stress 0.006341048
## ... Procrustes: rmse 7.832599e-05 max resid 0.0001843256
## ... Similar to previous best
## Run 128 stress 0.006363703
## ... Procrustes: rmse 0.006489158 max resid 0.01548406
## Run 129 stress 0.00635694
## ... Procrustes: rmse 0.004869627 max resid 0.0116036
## Run 130 stress 0.006361329
## ... Procrustes: rmse 0.005928835 max resid 0.01414063
## Run 131 stress 0.006365415
## ... Procrustes: rmse 0.00685488 max resid 0.01636138
## Run 132 stress 0.006341123
## ... Procrustes: rmse 0.0001184638 max resid 0.0002679516
## ... Similar to previous best
## Run 133 stress 0.006365855
## ... Procrustes: rmse 0.006878507 max resid 0.01641794
## Run 134 stress 0.006341028
## ... Procrustes: rmse 6.481832e-05 max resid 0.0001545345
## ... Similar to previous best
## Run 135 stress 0.006341113
## ... Procrustes: rmse 0.000117242 max resid 0.0002656391
## ... Similar to previous best
## Run 136 stress 0.006340995
## ... Procrustes: rmse 3.934239e-05 max resid 9.71673e-05
## ... Similar to previous best
## Run 137 stress 0.006341136
## ... Procrustes: rmse 0.0001297152 max resid 0.0002911878
## ... Similar to previous best
## Run 138 stress 0.006363368
## ... Procrustes: rmse 0.006412984 max resid 0.01530137
## Run 139 stress 0.006340922
## ... New best solution
## ... Procrustes: rmse 3.591329e-05 max resid 8.355632e-05
## ... Similar to previous best
## Run 140 stress 0.006341317
## ... Procrustes: rmse 0.0004795174 max resid 0.001111806
## ... Similar to previous best
## Run 141 stress 0.00634108
## ... Procrustes: rmse 0.0001313703 max resid 0.0003044595
## ... Similar to previous best
## Run 142 stress 0.006340995
## ... Procrustes: rmse 7.552015e-05 max resid 0.0001813316
## ... Similar to previous best
## Run 143 stress 0.00635641
## ... Procrustes: rmse 0.004691332 max resid 0.01117809
## Run 144 stress 0.006348847
## ... Procrustes: rmse 0.002735292 max resid 0.006500299
## ... Similar to previous best
## Run 145 stress 0.006341216
## ... Procrustes: rmse 0.0004306169 max resid 0.0009889525
## ... Similar to previous best
## Run 146 stress 0.006341048
## ... Procrustes: rmse 0.000109394 max resid 0.0002575402
## ... Similar to previous best
## Run 147 stress 0.006341099
## ... Procrustes: rmse 0.0001401196 max resid 0.0003224897
## ... Similar to previous best
## Run 148 stress 0.006341096
## ... Procrustes: rmse 0.000143298 max resid 0.0003291478
## ... Similar to previous best
## Run 149 stress 0.006341051
## ... Procrustes: rmse 0.0001115549 max resid 0.0002621668
## ... Similar to previous best
## Run 150 stress 0.006341006
## ... Procrustes: rmse 8.453903e-05 max resid 0.0002018368
## ... Similar to previous best
## Run 151 stress 0.006341068
## ... Procrustes: rmse 0.0001232982 max resid 0.0002874521
## ... Similar to previous best
## Run 152 stress 0.006341054
## ... Procrustes: rmse 0.0001132517 max resid 0.0002658336
## ... Similar to previous best
## Run 153 stress 0.006341036
## ... Procrustes: rmse 0.0001060618 max resid 0.0002501285
## ... Similar to previous best
## Run 154 stress 0.006341049
## ... Procrustes: rmse 0.0001149772 max resid 0.0002696319
## ... Similar to previous best
## Run 155 stress 0.006341033
## ... Procrustes: rmse 0.0001038921 max resid 0.0002453416
## ... Similar to previous best
## Run 156 stress 0.00634105
## ... Procrustes: rmse 0.0001130301 max resid 0.000265348
## ... Similar to previous best
## Run 157 stress 0.006341066
## ... Procrustes: rmse 0.0001260709 max resid 0.000293409
## ... Similar to previous best
## Run 158 stress 0.006355773
## ... Procrustes: rmse 0.004532638 max resid 0.01079835
## Run 159 stress 0.006341181
## ... Procrustes: rmse 0.0001814429 max resid 0.0004071515
## ... Similar to previous best
## Run 160 stress 0.006340983
## ... Procrustes: rmse 6.592616e-05 max resid 0.0001597132
## ... Similar to previous best
## Run 161 stress 0.006341104
## ... Procrustes: rmse 0.000148137 max resid 0.0003390943
## ... Similar to previous best
## Run 162 stress 0.006341093
## ... Procrustes: rmse 0.0001397957 max resid 0.0003218885
## ... Similar to previous best
## Run 163 stress 0.006341327
## ... Procrustes: rmse 0.0004914335 max resid 0.001131907
## ... Similar to previous best
## Run 164 stress 0.006365865
## ... Procrustes: rmse 0.006949882 max resid 0.01659045
## Run 165 stress 0.006340943
## ... Procrustes: rmse 2.586884e-05 max resid 6.437952e-05
## ... Similar to previous best
## Run 166 stress 0.00634108
## ... Procrustes: rmse 0.0001261857 max resid 0.0002936286
## ... Similar to previous best
## Run 167 stress 0.006341193
## ... Procrustes: rmse 0.0001903145 max resid 0.0004254076
## ... Similar to previous best
## Run 168 stress 0.006365724
## ... Procrustes: rmse 0.00692267 max resid 0.01652517
## Run 169 stress 0.006366838
## ... Procrustes: rmse 0.007176168 max resid 0.01713364
## Run 170 stress 0.006341127
## ... Procrustes: rmse 0.0001578574 max resid 0.000358959
## ... Similar to previous best
## Run 171 stress 0.006364677
## ... Procrustes: rmse 0.00667951 max resid 0.01594168
## Run 172 stress 0.006341083
## ... Procrustes: rmse 0.0003399521 max resid 0.0007751318
## ... Similar to previous best
## Run 173 stress 0.00634105
## ... Procrustes: rmse 0.0001147764 max resid 0.0002691523
## ... Similar to previous best
## Run 174 stress 0.006361574
## ... Procrustes: rmse 0.005959392 max resid 0.01421494
## Run 175 stress 0.006366687
## ... Procrustes: rmse 0.007142832 max resid 0.01705361
## Run 176 stress 0.006361806
## ... Procrustes: rmse 0.005997468 max resid 0.0143062
## Run 177 stress 0.006364241
## ... Procrustes: rmse 0.006583703 max resid 0.01571187
## Run 178 stress 0.006341112
## ... Procrustes: rmse 0.000148745 max resid 0.0003402931
## ... Similar to previous best
## Run 179 stress 0.006362991
## ... Procrustes: rmse 0.006285946 max resid 0.01499775
## Run 180 stress 0.00634099
## ... Procrustes: rmse 7.092251e-05 max resid 0.0001717222
## ... Similar to previous best
## Run 181 stress 0.006361078
## ... Procrustes: rmse 0.005841917 max resid 0.01393341
## Run 182 stress 0.006341124
## ... Procrustes: rmse 0.000155334 max resid 0.0003538152
## ... Similar to previous best
## Run 183 stress 0.006341141
## ... Procrustes: rmse 0.000163587 max resid 0.0003706676
## ... Similar to previous best
## Run 184 stress 0.006341236
## ... Procrustes: rmse 0.0004245894 max resid 0.0009882134
## ... Similar to previous best
## Run 185 stress 0.006341149
## ... Procrustes: rmse 0.000166784 max resid 0.000377199
## ... Similar to previous best
## Run 186 stress 0.006340975
## ... Procrustes: rmse 5.503744e-05 max resid 0.0001334694
## ... Similar to previous best
## Run 187 stress 0.006341109
## ... Procrustes: rmse 0.0001429757 max resid 0.0003283128
## ... Similar to previous best
## Run 188 stress 0.006341142
## ... Procrustes: rmse 0.0001639116 max resid 0.000371389
## ... Similar to previous best
## Run 189 stress 0.006341149
## ... Procrustes: rmse 0.0003773419 max resid 0.0008745188
## ... Similar to previous best
## Run 190 stress 0.006366705
## ... Procrustes: rmse 0.007146633 max resid 0.01706274
## Run 191 stress 0.006362793
## ... Procrustes: rmse 0.006246988 max resid 0.01490436
## Run 192 stress 0.006341341
## ... Procrustes: rmse 0.0005042942 max resid 0.001161885
## ... Similar to previous best
## Run 193 stress 0.006341104
## ... Procrustes: rmse 0.0001478741 max resid 0.0003385503
## ... Similar to previous best
## Run 194 stress 0.006341119
## ... Procrustes: rmse 0.000151713 max resid 0.0003463727
## ... Similar to previous best
## Run 195 stress 0.006341141
## ... Procrustes: rmse 0.000168527 max resid 0.0003808949
## ... Similar to previous best
## Run 196 stress 0.006341082
## ... Procrustes: rmse 0.0001357835 max resid 0.0003136786
## ... Similar to previous best
## Run 197 stress 0.006340981
## ... Procrustes: rmse 6.345209e-05 max resid 0.0001533932
## ... Similar to previous best
## Run 198 stress 0.006341081
## ... Procrustes: rmse 0.0001351062 max resid 0.0003122798
## ... Similar to previous best
## Run 199 stress 0.006341175
## ... Procrustes: rmse 0.0001814203 max resid 0.0004072331
## ... Similar to previous best
## Run 200 stress 0.006341018
## ... Procrustes: rmse 9.219909e-05 max resid 0.0002191461
## ... Similar to previous best
## Run 201 stress 0.006364643
## ... Procrustes: rmse 0.006675586 max resid 0.01593228
## Run 202 stress 0.3495558
## Run 203 stress 0.006364434
## ... Procrustes: rmse 0.006621721 max resid 0.01580305
## Run 204 stress 0.006341062
## ... Procrustes: rmse 0.0001213247 max resid 0.0002832867
## ... Similar to previous best
## Run 205 stress 0.006341136
## ... Procrustes: rmse 0.000165639 max resid 0.000374987
## ... Similar to previous best
## Run 206 stress 0.00636297
## ... Procrustes: rmse 0.006281382 max resid 0.01498681
## Run 207 stress 0.006341008
## ... Procrustes: rmse 8.62673e-05 max resid 0.000206076
## ... Similar to previous best
## Run 208 stress 0.006341102
## ... Procrustes: rmse 0.0001433609 max resid 0.00032919
## ... Similar to previous best
## Run 209 stress 0.006341187
## ... Procrustes: rmse 0.0001840343 max resid 0.0004125338
## ... Similar to previous best
## Run 210 stress 0.006341051
## ... Procrustes: rmse 0.0001166818 max resid 0.0002732699
## ... Similar to previous best
## Run 211 stress 0.006341173
## ... Procrustes: rmse 0.0001758537 max resid 0.0003957846
## ... Similar to previous best
## Run 212 stress 0.006341078
## ... Procrustes: rmse 0.0001333566 max resid 0.0003086501
## ... Similar to previous best
## Run 213 stress 0.006341173
## ... Procrustes: rmse 0.0001846525 max resid 0.0004138536
## ... Similar to previous best
## Run 214 stress 0.006341106
## ... Procrustes: rmse 0.0001491587 max resid 0.0003411864
## ... Similar to previous best
## Run 215 stress 0.006341168
## ... Procrustes: rmse 0.0001766196 max resid 0.0003973218
## ... Similar to previous best
## Run 216 stress 0.006341074
## ... Procrustes: rmse 0.0001304918 max resid 0.0003026546
## ... Similar to previous best
## Run 217 stress 0.006352482
## ... Procrustes: rmse 0.003703018 max resid 0.008813973
## ... Similar to previous best
## Run 218 stress 0.00634105
## ... Procrustes: rmse 0.0001147292 max resid 0.0002690691
## ... Similar to previous best
## Run 219 stress 0.006364682
## ... Procrustes: rmse 0.006570619 max resid 0.0156804
## Run 220 stress 0.006341128
## ... Procrustes: rmse 0.0001565747 max resid 0.0003562979
## ... Similar to previous best
## Run 221 stress 0.006357504
## ... Procrustes: rmse 0.004938563 max resid 0.01176976
## Run 222 stress 0.006364056
## ... Procrustes: rmse 0.006540849 max resid 0.01560908
## Run 223 stress 0.006341061
## ... Procrustes: rmse 0.0001163926 max resid 0.000272571
## ... Similar to previous best
## Run 224 stress 0.006341103
## ... Procrustes: rmse 0.0001477805 max resid 0.0003386263
## ... Similar to previous best
## Run 225 stress 0.006361157
## ... Procrustes: rmse 0.005860545 max resid 0.01397805
## Run 226 stress 0.006363876
## ... Procrustes: rmse 0.006499207 max resid 0.01550919
## Run 227 stress 0.006341115
## ... Procrustes: rmse 0.0001467227 max resid 0.0003360759
## ... Similar to previous best
## Run 228 stress 0.006364769
## ... Procrustes: rmse 0.006703506 max resid 0.01599928
## Run 229 stress 0.006341083
## ... Procrustes: rmse 0.0001352165 max resid 0.0003124731
## ... Similar to previous best
## Run 230 stress 0.006341101
## ... Procrustes: rmse 0.000146277 max resid 0.0003352672
## ... Similar to previous best
## Run 231 stress 0.006341101
## ... Procrustes: rmse 0.0001466326 max resid 0.0003360014
## ... Similar to previous best
## Run 232 stress 0.006341142
## ... Procrustes: rmse 0.0001657885 max resid 0.0003752611
## ... Similar to previous best
## Run 233 stress 0.006341096
## ... Procrustes: rmse 0.0001406256 max resid 0.0003236041
## ... Similar to previous best
## Run 234 stress 0.006341117
## ... Procrustes: rmse 0.0001554603 max resid 0.000354126
## ... Similar to previous best
## Run 235 stress 0.006359291
## ... Procrustes: rmse 0.005413249 max resid 0.01290644
## Run 236 stress 0.3578478
## Run 237 stress 0.006341048
## ... Procrustes: rmse 0.0001131105 max resid 0.0002655289
## ... Similar to previous best
## Run 238 stress 0.006341174
## ... Procrustes: rmse 0.0001855917 max resid 0.0004158025
## ... Similar to previous best
## Run 239 stress 0.00636442
## ... Procrustes: rmse 0.006624482 max resid 0.01580969
## Run 240 stress 0.006341324
## ... Procrustes: rmse 0.0004952599 max resid 0.001140952
## ... Similar to previous best
## Run 241 stress 0.006341228
## ... Procrustes: rmse 0.0002047514 max resid 0.0004548473
## ... Similar to previous best
## Run 242 stress 0.006340997
## ... Procrustes: rmse 7.447264e-05 max resid 0.0001793348
## ... Similar to previous best
## Run 243 stress 0.006340964
## ... Procrustes: rmse 4.863785e-05 max resid 0.0001187191
## ... Similar to previous best
## Run 244 stress 0.006363005
## ... Procrustes: rmse 0.006295437 max resid 0.01502052
## Run 245 stress 0.006341009
## ... Procrustes: rmse 8.654977e-05 max resid 0.0002066396
## ... Similar to previous best
## Run 246 stress 0.006341213
## ... Procrustes: rmse 0.0001979633 max resid 0.0004410041
## ... Similar to previous best
## Run 247 stress 0.006341116
## ... Procrustes: rmse 0.0001542237 max resid 0.0003515855
## ... Similar to previous best
## Run 248 stress 0.00634102
## ... Procrustes: rmse 9.180412e-05 max resid 0.0002182702
## ... Similar to previous best
## Run 249 stress 0.006341111
## ... Procrustes: rmse 0.00015207 max resid 0.0003471678
## ... Similar to previous best
## Run 250 stress 0.006341224
## ... Procrustes: rmse 0.0004383431 max resid 0.001007127
## ... Similar to previous best
## Run 251 stress 0.006341034
## ... Procrustes: rmse 0.0001030438 max resid 0.0002434906
## ... Similar to previous best
## Run 252 stress 0.006362022
## ... Procrustes: rmse 0.00606482 max resid 0.01446763
## Run 253 stress 0.006341094
## ... Procrustes: rmse 0.0001344284 max resid 0.0003107593
## ... Similar to previous best
## Run 254 stress 0.006346796
## ... Procrustes: rmse 0.002169571 max resid 0.005147313
## ... Similar to previous best
## Run 255 stress 0.006341015
## ... Procrustes: rmse 8.45625e-05 max resid 0.0002019162
## ... Similar to previous best
## Run 256 stress 0.006340908
## ... New best solution
## ... Procrustes: rmse 2.271073e-05 max resid 5.072808e-05
## ... Similar to previous best
## Run 257 stress 0.006341103
## ... Procrustes: rmse 0.0001635426 max resid 0.0003733909
## ... Similar to previous best
## Run 258 stress 0.006341006
## ... Procrustes: rmse 0.0001069535 max resid 0.0002506051
## ... Similar to previous best
## Run 259 stress 0.00636257
## ... Procrustes: rmse 0.006170092 max resid 0.01472058
## Run 260 stress 0.00634112
## ... Procrustes: rmse 0.0001723385 max resid 0.0003914481
## ... Similar to previous best
## Run 261 stress 0.3407916
## Run 262 stress 0.006340983
## ... Procrustes: rmse 8.211201e-05 max resid 0.0001934028
## ... Similar to previous best
## Run 263 stress 0.006341023
## ... Procrustes: rmse 0.0001201089 max resid 0.0002805397
## ... Similar to previous best
## Run 264 stress 0.006362389
## ... Procrustes: rmse 0.006120628 max resid 0.01460202
## Run 265 stress 0.006341075
## ... Procrustes: rmse 0.0001529568 max resid 0.0003515999
## ... Similar to previous best
## Run 266 stress 0.006366724
## ... Procrustes: rmse 0.006567776 max resid 0.01567339
## Run 267 stress 0.006361657
## ... Procrustes: rmse 0.00595776 max resid 0.01421162
## Run 268 stress 0.006341105
## ... Procrustes: rmse 0.0001684609 max resid 0.0003835416
## ... Similar to previous best
## Run 269 stress 0.006363896
## ... Procrustes: rmse 0.006482614 max resid 0.01546998
## Run 270 stress 0.006340998
## ... Procrustes: rmse 0.0001012887 max resid 0.0002386795
## ... Similar to previous best
## Run 271 stress 0.006341063
## ... Procrustes: rmse 0.0001465524 max resid 0.0003380942
## ... Similar to previous best
## Run 272 stress 0.006341102
## ... Procrustes: rmse 0.0001694923 max resid 0.0003856781
## ... Similar to previous best
## Run 273 stress 0.006341047
## ... Procrustes: rmse 0.0001344898 max resid 0.0003120895
## ... Similar to previous best
## Run 274 stress 0.006365205
## ... Procrustes: rmse 0.006766707 max resid 0.01615148
## Run 275 stress 0.00636278
## ... Procrustes: rmse 0.006222562 max resid 0.01484639
## Run 276 stress 0.006365983
## ... Procrustes: rmse 0.006961253 max resid 0.01661833
## Run 277 stress 0.006341264
## ... Procrustes: rmse 0.0004388551 max resid 0.001010312
## ... Similar to previous best
## Run 278 stress 0.006361931
## ... Procrustes: rmse 0.006022157 max resid 0.01436598
## Run 279 stress 0.006367356
## ... Procrustes: rmse 0.007270404 max resid 0.01736046
## Run 280 stress 0.006364538
## ... Procrustes: rmse 0.006630219 max resid 0.01582402
## Run 281 stress 0.006341136
## ... Procrustes: rmse 0.000183455 max resid 0.0004142785
## ... Similar to previous best
## Run 282 stress 0.006341163
## ... Procrustes: rmse 0.0002027483 max resid 0.0004538039
## ... Similar to previous best
## Run 283 stress 0.006341098
## ... Procrustes: rmse 0.0001671452 max resid 0.0003808633
## ... Similar to previous best
## Run 284 stress 0.006341053
## ... Procrustes: rmse 0.0001405436 max resid 0.0003253898
## ... Similar to previous best
## Run 285 stress 0.006359012
## ... Procrustes: rmse 0.005323555 max resid 0.01269226
## Run 286 stress 0.006341017
## ... Procrustes: rmse 0.0001148264 max resid 0.0002685708
## ... Similar to previous best
## Run 287 stress 0.006341131
## ... Procrustes: rmse 0.0001825611 max resid 0.0004124198
## ... Similar to previous best
## Run 288 stress 0.006341074
## ... Procrustes: rmse 0.0001536189 max resid 0.0003529804
## ... Similar to previous best
## Run 289 stress 0.006353419
## ... Procrustes: rmse 0.003924939 max resid 0.009345429
## ... Similar to previous best
## Run 290 stress 0.006341104
## ... Procrustes: rmse 0.0001658786 max resid 0.0003782102
## ... Similar to previous best
## Run 291 stress 0.00634107
## ... Procrustes: rmse 0.0001477187 max resid 0.0003405291
## ... Similar to previous best
## Run 292 stress 0.006359939
## ... Procrustes: rmse 0.005548123 max resid 0.01323012
## Run 293 stress 0.006341108
## ... Procrustes: rmse 0.0001729584 max resid 0.0003927874
## ... Similar to previous best
## Run 294 stress 0.00636264
## ... Procrustes: rmse 0.006189754 max resid 0.01476773
## Run 295 stress 0.006364648
## ... Procrustes: rmse 0.006643108 max resid 0.01585491
## Run 296 stress 0.006341153
## ... Procrustes: rmse 0.0001933866 max resid 0.0004345635
## ... Similar to previous best
## Run 297 stress 0.006341131
## ... Procrustes: rmse 0.0001858669 max resid 0.0004192537
## ... Similar to previous best
## Run 298 stress 0.006341125
## ... Procrustes: rmse 0.0001771622 max resid 0.0004013756
## ... Similar to previous best
## Run 299 stress 0.006341094
## ... Procrustes: rmse 0.0001597971 max resid 0.0003656624
## ... Similar to previous best
## Run 300 stress 0.006341013
## ... Procrustes: rmse 0.000112292 max resid 0.0002631759
## ... Similar to previous best
## Run 301 stress 0.006341084
## ... Procrustes: rmse 0.0001584992 max resid 0.000363075
## ... Similar to previous best
## Run 302 stress 0.006359458
## ... Procrustes: rmse 0.005429354 max resid 0.01294562
## Run 303 stress 0.006340995
## ... Procrustes: rmse 9.765101e-05 max resid 0.0002296481
## ... Similar to previous best
## Run 304 stress 0.006361009
## ... Procrustes: rmse 0.005784992 max resid 0.01379755
## Run 305 stress 0.006363727
## ... Procrustes: rmse 0.006439706 max resid 0.01536708
## Run 306 stress 0.006341011
## ... Procrustes: rmse 0.0001092289 max resid 0.0002561263
## ... Similar to previous best
## Run 307 stress 0.006356771
## ... Procrustes: rmse 0.004773127 max resid 0.01137453
## Run 308 stress 0.006365474
## ... Procrustes: rmse 0.006845562 max resid 0.01634069
## Run 309 stress 0.006341014
## ... Procrustes: rmse 0.0001129778 max resid 0.0002645629
## ... Similar to previous best
## Run 310 stress 0.006341113
## ... Procrustes: rmse 0.0001757192 max resid 0.0003984602
## ... Similar to previous best
## Run 311 stress 0.006341058
## ... Procrustes: rmse 0.0001373433 max resid 0.0003183215
## ... Similar to previous best
## Run 312 stress 0.006341154
## ... Procrustes: rmse 0.0001934214 max resid 0.0004346897
## ... Similar to previous best
## Run 313 stress 0.3495527
## Run 314 stress 0.006355332
## ... Procrustes: rmse 0.00439761 max resid 0.01047595
## Run 315 stress 0.006340954
## ... Procrustes: rmse 6.109415e-05 max resid 0.0001443534
## ... Similar to previous best
## Run 316 stress 0.006341056
## ... Procrustes: rmse 0.0001424622 max resid 0.0003293223
## ... Similar to previous best
## Run 317 stress 0.006341137
## ... Procrustes: rmse 0.0001863994 max resid 0.0004203379
## ... Similar to previous best
## Run 318 stress 0.006363027
## ... Procrustes: rmse 0.006280279 max resid 0.01498477
## Run 319 stress 0.006364763
## ... Procrustes: rmse 0.006653454 max resid 0.0158797
## Run 320 stress 0.006341111
## ... Procrustes: rmse 0.0001733323 max resid 0.0003935589
## ... Similar to previous best
## Run 321 stress 0.006340957
## ... Procrustes: rmse 6.351967e-05 max resid 0.0001514715
## ... Similar to previous best
## Run 322 stress 0.006341047
## ... Procrustes: rmse 0.0001210811 max resid 0.000282578
## ... Similar to previous best
## Run 323 stress 0.006341085
## ... Procrustes: rmse 0.0001595347 max resid 0.0003652152
## ... Similar to previous best
## Run 324 stress 0.006341376
## ... Procrustes: rmse 0.0004943393 max resid 0.001140585
## ... Similar to previous best
## Run 325 stress 0.006341006
## ... Procrustes: rmse 0.0001048779 max resid 0.0002475375
## ... Similar to previous best
## Run 326 stress 0.006358715
## ... Procrustes: rmse 0.005251058 max resid 0.01251864
## Run 327 stress 0.006341023
## ... Procrustes: rmse 0.0001194186 max resid 0.0002789723
## ... Similar to previous best
## Run 328 stress 0.006341009
## ... Procrustes: rmse 0.0001091924 max resid 0.0002559169
## ... Similar to previous best
## Run 329 stress 0.006341037
## ... Procrustes: rmse 0.0001283434 max resid 0.0002987377
## ... Similar to previous best
## Run 330 stress 0.006341016
## ... Procrustes: rmse 0.0001146884 max resid 0.0002683386
## ... Similar to previous best
## Run 331 stress 0.006341024
## ... Procrustes: rmse 0.0001200098 max resid 0.000280914
## ... Similar to previous best
## Run 332 stress 0.006341016
## ... Procrustes: rmse 0.0001145656 max resid 0.000268039
## ... Similar to previous best
## Run 333 stress 0.006360102
## ... Procrustes: rmse 0.00558517 max resid 0.01331887
## Run 334 stress 0.006364489
## ... Procrustes: rmse 0.006619633 max resid 0.01579864
## Run 335 stress 0.006341099
## ... Procrustes: rmse 0.0001616295 max resid 0.0003694124
## ... Similar to previous best
## Run 336 stress 0.00634098
## ... Procrustes: rmse 8.545882e-05 max resid 0.0002015086
## ... Similar to previous best
## Run 337 stress 0.006356295
## ... Procrustes: rmse 0.004632746 max resid 0.01103853
## Run 338 stress 0.006341004
## ... Procrustes: rmse 0.000105342 max resid 0.0002495578
## ... Similar to previous best
## Run 339 stress 0.00636628
## ... Procrustes: rmse 0.007016776 max resid 0.01675159
## Run 340 stress 0.006353941
## ... Procrustes: rmse 0.004056789 max resid 0.009660739
## ... Similar to previous best
## Run 341 stress 0.006364274
## ... Procrustes: rmse 0.006451557 max resid 0.0153954
## Run 342 stress 0.006341011
## ... Procrustes: rmse 0.0002423674 max resid 0.0005600835
## ... Similar to previous best
## Run 343 stress 0.006341055
## ... Procrustes: rmse 0.000141294 max resid 0.0003268445
## ... Similar to previous best
## Run 344 stress 0.00634112
## ... Procrustes: rmse 0.0001764244 max resid 0.0003998809
## ... Similar to previous best
## Run 345 stress 0.006360202
## ... Procrustes: rmse 0.005608899 max resid 0.01337571
## Run 346 stress 0.006341104
## ... Procrustes: rmse 0.0001655078 max resid 0.0003773983
## ... Similar to previous best
## Run 347 stress 0.006340989
## ... Procrustes: rmse 9.337494e-05 max resid 0.0002212687
## ... Similar to previous best
## Run 348 stress 0.006341178
## ... Procrustes: rmse 0.0002022396 max resid 0.0004525911
## ... Similar to previous best
## Run 349 stress 0.006340991
## ... Procrustes: rmse 9.492834e-05 max resid 0.000224098
## ... Similar to previous best
## Run 350 stress 0.006341051
## ... Procrustes: rmse 0.0001388923 max resid 0.0003217492
## ... Similar to previous best
## Run 351 stress 0.006341038
## ... Procrustes: rmse 0.0001302763 max resid 0.0003028881
## ... Similar to previous best
## Run 352 stress 0.006341111
## ... Procrustes: rmse 0.0001670362 max resid 0.0003804944
## ... Similar to previous best
## Run 353 stress 0.00636324
## ... Procrustes: rmse 0.006329688 max resid 0.01510324
## Run 354 stress 0.006348161
## ... Procrustes: rmse 0.002468298 max resid 0.00586284
## ... Similar to previous best
## Run 355 stress 0.006363158
## ... Procrustes: rmse 0.006310743 max resid 0.01505781
## Run 356 stress 0.006341165
## ... Procrustes: rmse 0.0001964818 max resid 0.0004409205
## ... Similar to previous best
## Run 357 stress 0.006341035
## ... Procrustes: rmse 0.0001282859 max resid 0.0002986324
## ... Similar to previous best
## Run 358 stress 0.00634111
## ... Procrustes: rmse 0.0001743557 max resid 0.0003956706
## ... Similar to previous best
## Run 359 stress 0.006341023
## ... Procrustes: rmse 0.0001187469 max resid 0.0002773285
## ... Similar to previous best
## Run 360 stress 0.006341072
## ... Procrustes: rmse 0.0001519805 max resid 0.0003495453
## ... Similar to previous best
## Run 361 stress 0.006359247
## ... Procrustes: rmse 0.005381048 max resid 0.01282994
## Run 362 stress 0.006341145
## ... Procrustes: rmse 0.0001883891 max resid 0.0004243834
## ... Similar to previous best
## Run 363 stress 0.006341036
## ... Procrustes: rmse 0.0001293269 max resid 0.0003008302
## ... Similar to previous best
## Run 364 stress 0.006344511
## ... Procrustes: rmse 0.001492676 max resid 0.003527339
## ... Similar to previous best
## Run 365 stress 0.00634107
## ... Procrustes: rmse 0.0001464295 max resid 0.0003378024
## ... Similar to previous best
## Run 366 stress 0.006341149
## ... Procrustes: rmse 0.0001882502 max resid 0.0004240758
## ... Similar to previous best
## Run 367 stress 0.006341172
## ... Procrustes: rmse 0.000199767 max resid 0.00044764
## ... Similar to previous best
## Run 368 stress 0.006362682
## ... Procrustes: rmse 0.006199052 max resid 0.01479002
## Run 369 stress 0.006363888
## ... Procrustes: rmse 0.006467139 max resid 0.01543283
## Run 370 stress 0.006340986
## ... Procrustes: rmse 9.108146e-05 max resid 0.0002145394
## ... Similar to previous best
## Run 371 stress 0.006341056
## ... Procrustes: rmse 0.0001395778 max resid 0.0003231584
## ... Similar to previous best
## Run 372 stress 0.006341117
## ... Procrustes: rmse 0.0001699441 max resid 0.0003865198
## ... Similar to previous best
## Run 373 stress 0.00636505
## ... Procrustes: rmse 0.006748529 max resid 0.01610787
## Run 374 stress 0.006363195
## ... Procrustes: rmse 0.006253822 max resid 0.01492129
## Run 375 stress 0.006365097
## ... Procrustes: rmse 0.006759492 max resid 0.01613417
## Run 376 stress 0.006341078
## ... Procrustes: rmse 0.0001554382 max resid 0.000356757
## ... Similar to previous best
## Run 377 stress 0.006341155
## ... Procrustes: rmse 0.0001929138 max resid 0.0004336369
## ... Similar to previous best
## Run 378 stress 0.00634111
## ... Procrustes: rmse 0.00016437 max resid 0.0003749811
## ... Similar to previous best
## Run 379 stress 0.006363239
## ... Procrustes: rmse 0.006328512 max resid 0.01510043
## Run 380 stress 0.006362645
## ... Procrustes: rmse 0.0061908 max resid 0.01477024
## Run 381 stress 0.006340965
## ... Procrustes: rmse 7.027195e-05 max resid 0.0001674773
## ... Similar to previous best
## Run 382 stress 0.006341119
## ... Procrustes: rmse 0.0001794382 max resid 0.0004060912
## ... Similar to previous best
## Run 383 stress 0.006341228
## ... Procrustes: rmse 0.0002273311 max resid 0.0005039447
## ... Similar to previous best
## Run 384 stress 0.006341064
## ... Procrustes: rmse 0.000147304 max resid 0.0003397017
## ... Similar to previous best
## Run 385 stress 0.006365154
## ... Procrustes: rmse 0.006772403 max resid 0.01616515
## Run 386 stress 0.00634099
## ... Procrustes: rmse 9.464602e-05 max resid 0.000222551
## ... Similar to previous best
## Run 387 stress 0.006341139
## ... Procrustes: rmse 0.0001898287 max resid 0.0004273761
## ... Similar to previous best
## Run 388 stress 0.006340918
## ... Procrustes: rmse 1.670834e-05 max resid 4.3424e-05
## ... Similar to previous best
## Run 389 stress 0.006365068
## ... Procrustes: rmse 0.006746498 max resid 0.01610297
## Run 390 stress 0.006341034
## ... Procrustes: rmse 0.0001274079 max resid 0.0002966691
## ... Similar to previous best
## Run 391 stress 0.006341057
## ... Procrustes: rmse 0.0001426244 max resid 0.0003297089
## ... Similar to previous best
## Run 392 stress 0.006341067
## ... Procrustes: rmse 0.000149443 max resid 0.0003442646
## ... Similar to previous best
## Run 393 stress 0.006341016
## ... Procrustes: rmse 0.0001144979 max resid 0.0002680339
## ... Similar to previous best
## Run 394 stress 0.006364008
## ... Procrustes: rmse 0.006493854 max resid 0.0154969
## Run 395 stress 0.006341116
## ... Procrustes: rmse 0.0001773676 max resid 0.0004018439
## ... Similar to previous best
## Run 396 stress 0.006362019
## ... Procrustes: rmse 0.006042592 max resid 0.01441495
## Run 397 stress 0.006341133
## ... Procrustes: rmse 0.0001830037 max resid 0.0004133622
## ... Similar to previous best
## Run 398 stress 0.2917584
## Run 399 stress 0.006341081
## ... Procrustes: rmse 0.00015743 max resid 0.0003608766
## ... Similar to previous best
## Run 400 stress 0.006341035
## ... Procrustes: rmse 0.000128336 max resid 0.0002987912
## ... Similar to previous best
## Run 401 stress 0.006341065
## ... Procrustes: rmse 0.0001477248 max resid 0.0003406001
## ... Similar to previous best
## Run 402 stress 0.006341197
## ... Procrustes: rmse 0.0002146547 max resid 0.0004780007
## ... Similar to previous best
## Run 403 stress 0.006364559
## ... Procrustes: rmse 0.006606762 max resid 0.01576775
## Run 404 stress 0.006341097
## ... Procrustes: rmse 0.0001658305 max resid 0.0003781668
## ... Similar to previous best
## Run 405 stress 0.006350868
## ... Procrustes: rmse 0.003213605 max resid 0.007644609
## ... Similar to previous best
## Run 406 stress 0.006363033
## ... Procrustes: rmse 0.00628158 max resid 0.01498789
## Run 407 stress 0.00634119
## ... Procrustes: rmse 0.0002097789 max resid 0.0004680207
## ... Similar to previous best
## Run 408 stress 0.006341056
## ... Procrustes: rmse 0.0001417262 max resid 0.0003277809
## ... Similar to previous best
## Run 409 stress 0.006368049
## ... Procrustes: rmse 0.007426034 max resid 0.01773418
## Run 410 stress 0.006361236
## ... Procrustes: rmse 0.005858014 max resid 0.01397258
## Run 411 stress 0.00636153
## ... Procrustes: rmse 0.00592744 max resid 0.01413896
## Run 412 stress 0.006341013
## ... Procrustes: rmse 0.0001074721 max resid 0.0002522428
## ... Similar to previous best
## Run 413 stress 0.00634102
## ... Procrustes: rmse 0.0001162227 max resid 0.0002716278
## ... Similar to previous best
## Run 414 stress 0.006341013
## ... Procrustes: rmse 0.0001103865 max resid 0.0002585408
## ... Similar to previous best
## Run 415 stress 0.0063411
## ... Procrustes: rmse 0.0001667477 max resid 0.0003800064
## ... Similar to previous best
## Run 416 stress 0.006341021
## ... Procrustes: rmse 0.0001180988 max resid 0.0002759952
## ... Similar to previous best
## Run 417 stress 0.006341043
## ... Procrustes: rmse 0.0001317375 max resid 0.0003061224
## ... Similar to previous best
## Run 418 stress 0.006340953
## ... Procrustes: rmse 6.04017e-05 max resid 0.0001430095
## ... Similar to previous best
## Run 419 stress 0.006341129
## ... Procrustes: rmse 0.0001847975 max resid 0.0004170668
## ... Similar to previous best
## Run 420 stress 0.006341156
## ... Procrustes: rmse 0.0001989419 max resid 0.0004460081
## ... Similar to previous best
## Run 421 stress 0.00636488
## ... Procrustes: rmse 0.006709241 max resid 0.01601361
## Run 422 stress 0.006341113
## ... Procrustes: rmse 0.0001761153 max resid 0.0003992791
## ... Similar to previous best
## Run 423 stress 0.006341027
## ... Procrustes: rmse 0.0001227532 max resid 0.0002866584
## ... Similar to previous best
## Run 424 stress 0.00636241
## ... Procrustes: rmse 0.006135242 max resid 0.01463704
## Run 425 stress 0.006341088
## ... Procrustes: rmse 0.0001605992 max resid 0.0003673941
## ... Similar to previous best
## Run 426 stress 0.006366603
## ... Procrustes: rmse 0.007066046 max resid 0.01686978
## Run 427 stress 0.006341001
## ... Procrustes: rmse 0.0001030288 max resid 0.0002428793
## ... Similar to previous best
## Run 428 stress 0.006365614
## ... Procrustes: rmse 0.006869405 max resid 0.01639791
## Run 429 stress 0.006361687
## ... Procrustes: rmse 0.005964613 max resid 0.01422805
## Run 430 stress 0.006362058
## ... Procrustes: rmse 0.006051849 max resid 0.01443715
## Run 431 stress 0.006341199
## ... Procrustes: rmse 0.0002165024 max resid 0.0004817957
## ... Similar to previous best
## Run 432 stress 0.006341035
## ... Procrustes: rmse 0.0001284852 max resid 0.0002991025
## ... Similar to previous best
## Run 433 stress 0.006341145
## ... Procrustes: rmse 0.0001878604 max resid 0.000423227
## ... Similar to previous best
## Run 434 stress 0.006365386
## ... Procrustes: rmse 0.006824481 max resid 0.0162901
## Run 435 stress 0.3578484
## Run 436 stress 0.006341009
## ... Procrustes: rmse 0.0001088509 max resid 0.000255098
## ... Similar to previous best
## Run 437 stress 0.006359424
## ... Procrustes: rmse 0.00542325 max resid 0.01293102
## Run 438 stress 0.006364228
## ... Procrustes: rmse 0.006385875 max resid 0.01523782
## Run 439 stress 0.006341116
## ... Procrustes: rmse 0.0001744289 max resid 0.0003957943
## ... Similar to previous best
## Run 440 stress 0.006341066
## ... Procrustes: rmse 0.0001473972 max resid 0.0003398834
## ... Similar to previous best
## Run 441 stress 0.006341112
## ... Procrustes: rmse 0.0001708757 max resid 0.0003884388
## ... Similar to previous best
## Run 442 stress 0.006341062
## ... Procrustes: rmse 0.0001459223 max resid 0.0003367685
## ... Similar to previous best
## Run 443 stress 0.00636472
## ... Procrustes: rmse 0.006672783 max resid 0.01592614
## Run 444 stress 0.00636104
## ... Procrustes: rmse 0.005811753 max resid 0.01386173
## Run 445 stress 0.00636245
## ... Procrustes: rmse 0.006014066 max resid 0.01434635
## Run 446 stress 0.006340988
## ... Procrustes: rmse 9.236216e-05 max resid 0.0002175707
## ... Similar to previous best
## Run 447 stress 0.3409171
## Run 448 stress 0.00636184
## ... Procrustes: rmse 0.006001539 max resid 0.01431656
## Run 449 stress 0.006341051
## ... Procrustes: rmse 0.0001373467 max resid 0.0003183315
## ... Similar to previous best
## Run 450 stress 0.006340996
## ... Procrustes: rmse 9.967849e-05 max resid 0.0002341271
## ... Similar to previous best
## Run 451 stress 0.006362115
## ... Procrustes: rmse 0.006066246 max resid 0.01447165
## Run 452 stress 0.006341154
## ... Procrustes: rmse 0.0001960981 max resid 0.0004401954
## ... Similar to previous best
## Run 453 stress 0.006340982
## ... Procrustes: rmse 8.316622e-05 max resid 0.0001708088
## ... Similar to previous best
## Run 454 stress 0.006340947
## ... Procrustes: rmse 5.113376e-05 max resid 0.0001207963
## ... Similar to previous best
## Run 455 stress 0.006341119
## ... Procrustes: rmse 0.0001792702 max resid 0.0004057392
## ... Similar to previous best
## Run 456 stress 0.006362665
## ... Procrustes: rmse 0.006189202 max resid 0.01476641
## Run 457 stress 0.006341141
## ... Procrustes: rmse 0.0001897255 max resid 0.0004271558
## ... Similar to previous best
## Run 458 stress 0.006354556
## ... Procrustes: rmse 0.004199697 max resid 0.01000254
## Run 459 stress 0.006341012
## ... Procrustes: rmse 0.0001103421 max resid 0.0002584306
## ... Similar to previous best
## Run 460 stress 0.006341141
## ... Procrustes: rmse 0.0001854666 max resid 0.0004183225
## ... Similar to previous best
## Run 461 stress 0.006341105
## ... Procrustes: rmse 0.0001662221 max resid 0.0003789183
## ... Similar to previous best
## Run 462 stress 0.006344487
## ... Procrustes: rmse 0.001489895 max resid 0.003520671
## ... Similar to previous best
## Run 463 stress 0.006341198
## ... Procrustes: rmse 0.0002121339 max resid 0.0004728026
## ... Similar to previous best
## Run 464 stress 0.006341111
## ... Procrustes: rmse 0.0001746643 max resid 0.0003962943
## ... Similar to previous best
## Run 465 stress 0.006341142
## ... Procrustes: rmse 0.0001915324 max resid 0.0004308476
## ... Similar to previous best
## Run 466 stress 0.006341103
## ... Procrustes: rmse 0.0001701727 max resid 0.0003870841
## ... Similar to previous best
## Run 467 stress 0.006352671
## ... Procrustes: rmse 0.003731144 max resid 0.008882024
## ... Similar to previous best
## Run 468 stress 0.006340988
## ... Procrustes: rmse 9.236171e-05 max resid 0.0002172428
## ... Similar to previous best
## Run 469 stress 0.006365446
## ... Procrustes: rmse 0.006839124 max resid 0.01632524
## Run 470 stress 0.006341002
## ... Procrustes: rmse 0.0001040253 max resid 0.0002442844
## ... Similar to previous best
## Run 471 stress 0.006341137
## ... Procrustes: rmse 0.0001811507 max resid 0.0004095149
## ... Similar to previous best
## Run 472 stress 0.006366042
## ... Procrustes: rmse 0.006970949 max resid 0.01664158
## Run 473 stress 0.006341056
## ... Procrustes: rmse 0.000137603 max resid 0.0003188402
## ... Similar to previous best
## Run 474 stress 0.006341015
## ... Procrustes: rmse 0.0001141196 max resid 0.0002670548
## ... Similar to previous best
## Run 475 stress 0.006341105
## ... Procrustes: rmse 0.00017128 max resid 0.0003893593
## ... Similar to previous best
## Run 476 stress 0.006341059
## ... Procrustes: rmse 0.0001429877 max resid 0.0003304845
## ... Similar to previous best
## Run 477 stress 0.006341026
## ... Procrustes: rmse 0.0001218224 max resid 0.0002843357
## ... Similar to previous best
## Run 478 stress 0.006362624
## ... Procrustes: rmse 0.006175959 max resid 0.01473463
## Run 479 stress 0.006341142
## ... Procrustes: rmse 0.0001913896 max resid 0.0004305564
## ... Similar to previous best
## Run 480 stress 0.006341118
## ... Procrustes: rmse 0.0001785202 max resid 0.0004042031
## ... Similar to previous best
## Run 481 stress 0.006341056
## ... Procrustes: rmse 0.0001387965 max resid 0.0003213977
## ... Similar to previous best
## Run 482 stress 0.00634107
## ... Procrustes: rmse 0.0001505611 max resid 0.0003465729
## ... Similar to previous best
## Run 483 stress 0.00634115
## ... Procrustes: rmse 0.0001960437 max resid 0.000440084
## ... Similar to previous best
## Run 484 stress 0.006341155
## ... Procrustes: rmse 0.000198522 max resid 0.0004451624
## ... Similar to previous best
## Run 485 stress 0.006363341
## ... Procrustes: rmse 0.006343088 max resid 0.01513534
## Run 486 stress 0.006360229
## ... Procrustes: rmse 0.005611733 max resid 0.0133825
## Run 487 stress 0.006352349
## ... Procrustes: rmse 0.003643307 max resid 0.008672005
## ... Similar to previous best
## Run 488 stress 0.006340951
## ... Procrustes: rmse 5.809469e-05 max resid 0.0001411914
## ... Similar to previous best
## Run 489 stress 0.006359069
## ... Procrustes: rmse 0.005338021 max resid 0.0127269
## Run 490 stress 0.006363039
## ... Procrustes: rmse 0.006283212 max resid 0.0149918
## Run 491 stress 0.006365663
## ... Procrustes: rmse 0.006887984 max resid 0.01644248
## Run 492 stress 0.006341054
## ... Procrustes: rmse 0.0001410323 max resid 0.0003262753
## ... Similar to previous best
## Run 493 stress 0.006341171
## ... Procrustes: rmse 0.0003832935 max resid 0.0008796689
## ... Similar to previous best
## Run 494 stress 0.006341115
## ... Procrustes: rmse 0.0001726507 max resid 0.0003921292
## ... Similar to previous best
## Run 495 stress 0.006341354
## ... Procrustes: rmse 0.0004824165 max resid 0.001112587
## ... Similar to previous best
## Run 496 stress 0.006341
## ... Procrustes: rmse 0.0001024905 max resid 0.0002407189
## ... Similar to previous best
## Run 497 stress 0.006349121
## ... Procrustes: rmse 0.002787876 max resid 0.006627045
## ... Similar to previous best
## Run 498 stress 0.006364779
## ... Procrustes: rmse 0.006686249 max resid 0.01595844
## Run 499 stress 0.006363403
## ... Procrustes: rmse 0.006348094 max resid 0.01514738
## Run 500 stress 0.00634107
## ... Procrustes: rmse 0.000148985 max resid 0.0003432236
## ... Similar to previous best
## *** Best solution repeated 165 timesDetermine stratification homogeneity using environmental/biogeographical distances
We use betadisper to determine homogeneity of the environmental/biogeographical distances based on the stratification category. Is the dispersion of environmental/biogeographical distances similar within stratification categories?
### Environmental
groupse <- env[-c(9,16,18,20),19]
enve_bd <- betadisper(enve_dist, groupse)
anova(enve_bd)## Analysis of Variance Table
##
## Response: Distances
## Df Sum Sq Mean Sq F value Pr(>F)
## Groups 2 2.6595 1.3298 6.0582 0.011 *
## Residuals 16 3.5120 0.2195
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1permutest(enve_bd, pairwise = TRUE)##
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
##
## Response: Distances
## Df Sum Sq Mean Sq F N.Perm Pr(>F)
## Groups 2 2.6595 1.3298 6.0582 999 0.013 *
## Residuals 16 3.5120 0.2195
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
## Mixed Ocean Stratified
## Mixed 0.147000 0.036
## Ocean 0.146462 0.012
## Stratified 0.034379 0.013298(enve_bd.HSD <- TukeyHSD(enve_bd))## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## Ocean-Mixed -0.4426265 -1.26105575 0.3758028 0.3665113
## Stratified-Mixed 0.5734890 -0.03096109 1.1779390 0.0643192
## Stratified-Ocean 1.0161155 0.19768622 1.8345447 0.0144650boxplot(enve_bd)
### Biogeographic
groupsb <- env[-c(8,20),19]
envb_bd <- betadisper(envb_dist, groupsb)
anova(envb_bd)## Analysis of Variance Table
##
## Response: Distances
## Df Sum Sq Mean Sq F value Pr(>F)
## Groups 2 9.293 4.6467 2.6437 0.09848 .
## Residuals 18 31.638 1.7577
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1permutest(envb_bd, pairwise = TRUE)##
## Permutation test for homogeneity of multivariate dispersions
## Permutation: free
## Number of permutations: 999
##
## Response: Distances
## Df Sum Sq Mean Sq F N.Perm Pr(>F)
## Groups 2 9.293 4.6467 2.6437 999 0.048 *
## Residuals 18 31.638 1.7577
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
##
## Pairwise comparisons:
## (Observed p-value below diagonal, permuted p-value above diagonal)
## Mixed Ocean Stratified
## Mixed 0.06600 0.705
## Ocean 0.12207 0.070
## Stratified 0.53863 0.12721(envb_bd.HSD <- TukeyHSD(envb_bd))## Tukey multiple comparisons of means
## 95% family-wise confidence level
##
## Fit: aov(formula = distances ~ group, data = df)
##
## $group
## diff lwr upr p adj
## Ocean-Mixed 1.55171 -0.3307344 3.4341546 0.1171621
## Stratified-Mixed 0.16319 -1.5879737 1.9143538 0.9693514
## Stratified-Ocean -1.38852 -3.2158566 0.4388165 0.1565488boxplot(envb_bd)
# Determine stratification dissimilarity using
environmental/biogeographical distances We use adonis to determine if
dissimilarities of species environmental/biogeographical distances by
stratification categories are significant and how much of the variation
is explained by environmental/biogeographical dissimilarities.
### Environmental
enve_pmc <- adonis2(enve_dist ~ env[-c(9,16,18,20),19], permutations = 999)
enve_pmc## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
##
## adonis2(formula = enve_dist ~ env[-c(9, 16, 18, 20), 19], permutations = 999)
## Df SumOfSqs R2 F Pr(>F)
## env[-c(9, 16, 18, 20), 19] 2 35.341 0.65446 15.152 0.001 ***
## Residual 16 18.659 0.34554
## Total 18 54.000 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# By stratifcation
enve_pmc_pair <- pairwise.adonis(enve_dist, env[-c(9,16,18,20),19], p.adjust.m = "bonferroni", perm = 999)
enve_pmc_pair## pairs Df SumsOfSqs F.Model R2 p.value p.adjusted sig
## 1 Stratified vs Mixed 1 24.969657 18.950602 0.5751216 0.001 0.003 *
## 2 Stratified vs Ocean 1 23.134197 14.727147 0.6206877 0.005 0.015 .
## 3 Mixed vs Ocean 1 1.589454 3.021701 0.2513539 0.088 0.264### Biogeographic
envb_pmc <- adonis2(envb_dist ~ env[-c(8,20),19], permutations = 999)
envb_pmc## Permutation test for adonis under reduced model
## Terms added sequentially (first to last)
## Permutation: free
## Number of permutations: 999
##
## adonis2(formula = envb_dist ~ env[-c(8, 20), 19], permutations = 999)
## Df SumOfSqs R2 F Pr(>F)
## env[-c(8, 20), 19] 2 48.891 0.39926 5.9816 0.001 ***
## Residual 18 73.562 0.60074
## Total 20 122.454 1.00000
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1# By stratifcation
envb_pmc_pair <- pairwise.adonis(envb_dist, env[-c(8,20),19], p.adjust.m = "bonferroni", perm = 999)
envb_pmc_pair## pairs Df SumsOfSqs F.Model R2 p.value p.adjusted sig
## 1 Stratified vs Mixed 1 10.20361 7.086195 0.3527893 0.007 0.021 .
## 2 Stratified vs Ocean 1 40.90496 7.473867 0.3837896 0.002 0.006 *
## 3 Mixed vs Ocean 1 23.15310 4.060068 0.2695916 0.013 0.039 .Envfit trait influence on environmental/biogeographical distances
We use envfit to determine significantly correlated functional variables to our environmental/biogeographical NMDS. We will use these results, if significant, in our figure.
### Environmental
# All sites for figure
enve_ef <- envfit(enve_NMDS, FD_total_env[-c(9,16,18,20),c(54:55)], permutations = 1000, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
enve_ef##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## B2s -0.0712 -0.8103
## B3f 0.6100 0.2397
## B4e -1.9470 -0.3737
## Ono -1.9370 -0.6037
## Oyes 0.5165 0.1610
##
## Goodness of fit:
## r2 Pr(>r)
## B 0.4513 0.01399 *
## O 0.4159 0.02398 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000enve_efp <- p.adjust.envfit(enve_ef)## Adjustment of significance by bonferroni methodenve_efp##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## B2s -0.0712 -0.8103
## B3f 0.6100 0.2397
## B4e -1.9470 -0.3737
## Ono -1.9370 -0.6037
## Oyes 0.5165 0.1610
##
## Goodness of fit:
## r2 Pr(>r)
## B 0.4513 0.02797 *
## O 0.4159 0.04795 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# All sites by stratification
envea_ef <- envfit(enve_NMDS, FD_total_env[-c(9,16,18,20),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
envea_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.38726 0.92197 0.2545 0.164
## Troph -0.98542 -0.17016 0.6098 0.121
## DepthMin 0.11233 -0.99367 0.0343 0.776
## DepthMax 0.55072 0.83469 0.4131 0.099 .
## TempPrefMin 0.72291 -0.69095 0.1232 0.887
## TempPrefMax -0.37699 -0.92622 0.1176 0.348
## Weight 0.33232 0.94317 0.1191 0.289
## CaudalFinLength 0.08773 0.99614 0.0656 0.532
## DorsalSpinesMean 0.85784 0.51392 0.6120 0.071 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -0.0712 -0.8103
## BodyShapeI3f 0.6100 0.2397
## BodyShapeI4e -1.9470 -0.3737
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.9370 -0.6037
## OperculumPresentyes 0.5165 0.1610
## FeedingPathb 0.2063 0.0528
## FeedingPathp -1.7534 -0.4488
## RepGuild11b -1.7534 -0.4488
## RepGuild12g -2.1183 -0.4960
## RepGuild13n 0.5162 0.1260
## RepGuild22eb -1.6415 -1.4438
## RepGuild23n -2.1183 -0.4960
## RepGuild26s 0.3674 0.1522
## ParentalCare3p -1.5812 -0.2305
## ParentalCare4n 0.7298 0.1064
## WaterPref1s 0.6173 0.2224
## WaterPref3a -1.7286 -0.6226
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4513 0.015 *
## DemersPelag 0.0000 1.000
## OperculumPresent 0.4159 0.020 *
## FeedingPath 0.1460 0.374
## RepGuild1 0.4039 0.101
## RepGuild2 0.3345 0.059 .
## ParentalCare 0.4465 0.316
## WaterPref 0.4568 0.119
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envea_efp <- p.adjust.envfit(envea_ef)## Adjustment of significance by bonferroni methodenvea_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.38726 0.92197 0.2545 1
## Troph -0.98542 -0.17016 0.6098 1
## DepthMin 0.11233 -0.99367 0.0343 1
## DepthMax 0.55072 0.83469 0.4131 1
## TempPrefMin 0.72291 -0.69095 0.1232 1
## TempPrefMax -0.37699 -0.92622 0.1176 1
## Weight 0.33232 0.94317 0.1191 1
## CaudalFinLength 0.08773 0.99614 0.0656 1
## DorsalSpinesMean 0.85784 0.51392 0.6120 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -0.0712 -0.8103
## BodyShapeI3f 0.6100 0.2397
## BodyShapeI4e -1.9470 -0.3737
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.9370 -0.6037
## OperculumPresentyes 0.5165 0.1610
## FeedingPathb 0.2063 0.0528
## FeedingPathp -1.7534 -0.4488
## RepGuild11b -1.7534 -0.4488
## RepGuild12g -2.1183 -0.4960
## RepGuild13n 0.5162 0.1260
## RepGuild22eb -1.6415 -1.4438
## RepGuild23n -2.1183 -0.4960
## RepGuild26s 0.3674 0.1522
## ParentalCare3p -1.5812 -0.2305
## ParentalCare4n 0.7298 0.1064
## WaterPref1s 0.6173 0.2224
## WaterPref3a -1.7286 -0.6226
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.4513 0.255
## DemersPelag 0.0000 1.000
## OperculumPresent 0.4159 0.340
## FeedingPath 0.1460 1.000
## RepGuild1 0.4039 1.000
## RepGuild2 0.3345 1.000
## ParentalCare 0.4465 1.000
## WaterPref 0.4568 1.000
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envems_ef <- envfit(envems_NMDS, FD_total_env[c(1:6,8,10,12:15,17,21:23),c(6,8,10,19)], permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
envems_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## Troph -0.86893 -0.49494 0.608 0.041 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -1.4705 -1.3732
## BodyShapeI3f 0.7485 0.2253
## BodyShapeI4e -1.6908 -0.2764
## OperculumPresentno -1.6936 -0.5096
## OperculumPresentyes 0.5645 0.1699
## RepGuild22eb -1.4705 -1.3732
## RepGuild23n -1.8914 -0.3776
## RepGuild26s 0.4041 0.1637
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.5560 0.009 **
## OperculumPresent 0.4121 0.028 *
## RepGuild2 0.3448 0.035 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envems_efp <- p.adjust.envfit(envems_ef)## Adjustment of significance by bonferroni methodenvems_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## Troph -0.86893 -0.49494 0.608 0.164
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -1.4705 -1.3732
## BodyShapeI3f 0.7485 0.2253
## BodyShapeI4e -1.6908 -0.2764
## OperculumPresentno -1.6936 -0.5096
## OperculumPresentyes 0.5645 0.1699
## RepGuild22eb -1.4705 -1.3732
## RepGuild23n -1.8914 -0.3776
## RepGuild26s 0.4041 0.1637
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.5560 0.036 *
## OperculumPresent 0.4121 0.112
## RepGuild2 0.3448 0.140
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
enveom_ef <- envfit(enveom_NMDS, FD_total_env[c(3,6:8,10:11,13:15,19,23),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
enveom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL -0.79858 0.60189 0.2513 0.414
## Troph -0.69774 0.71635 0.5557 0.173
## DepthMin 0.83771 -0.54611 0.2281 0.360
## DepthMax -0.86510 0.50161 0.0442 0.852
## TempPrefMin 0.16112 -0.98693 0.0599 0.756
## TempPrefMax 0.01560 0.99988 0.0119 0.954
## Weight -0.17122 0.98523 0.1387 0.501
## CaudalFinLength -0.99933 -0.03647 0.3170 0.275
## DorsalSpinesMean 0.78922 -0.61411 0.1792 0.489
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.4404 -0.0632
## BodyShapeI3f -0.0440 0.0063
## DemersPelag1r 0.0000 0.0000
## OperculumPresentyes 0.0000 0.0000
## FeedingPathb 0.0000 0.0000
## RepGuild13n 0.0000 0.0000
## RepGuild26s 0.0000 0.0000
## ParentalCare4n 0.0000 0.0000
## WaterPref1s 0.0000 0.0000
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.0356 1
## DemersPelag 0.0000 1
## OperculumPresent 0.0000 1
## FeedingPath 0.0000 1
## RepGuild1 0.0000 1
## RepGuild2 0.0000 1
## ParentalCare 0.0000 1
## WaterPref 0.0000 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999enveom_efp <- p.adjust.envfit(enveom_ef)## Adjustment of significance by bonferroni methodenveom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL -0.79858 0.60189 0.2513 1
## Troph -0.69774 0.71635 0.5557 1
## DepthMin 0.83771 -0.54611 0.2281 1
## DepthMax -0.86510 0.50161 0.0442 1
## TempPrefMin 0.16112 -0.98693 0.0599 1
## TempPrefMax 0.01560 0.99988 0.0119 1
## Weight -0.17122 0.98523 0.1387 1
## CaudalFinLength -0.99933 -0.03647 0.3170 1
## DorsalSpinesMean 0.78922 -0.61411 0.1792 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.4404 -0.0632
## BodyShapeI3f -0.0440 0.0063
## DemersPelag1r 0.0000 0.0000
## OperculumPresentyes 0.0000 0.0000
## FeedingPathb 0.0000 0.0000
## RepGuild13n 0.0000 0.0000
## RepGuild26s 0.0000 0.0000
## ParentalCare4n 0.0000 0.0000
## WaterPref1s 0.0000 0.0000
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.0356 1
## DemersPelag 0.0000 1
## OperculumPresent 0.0000 1
## FeedingPath 0.0000 1
## RepGuild1 0.0000 1
## RepGuild2 0.0000 1
## ParentalCare 0.0000 1
## WaterPref 0.0000 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
enveso_ef <- envfit(enveso_NMDS, FD_total_env[c(1:2,4,5,7,11:12,17,19,21:22),c(6,8,19)], permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
enveso_ef##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.6527 -0.6941
## BodyShapeI3f 0.7703 0.5322
## BodyShapeI4e -1.2893 -0.3182
## OperculumPresentno -1.2190 -0.5445
## OperculumPresentyes 0.6966 0.3111
## RepGuild22eb -0.8320 -1.3628
## RepGuild23n -1.5060 -0.4656
## RepGuild26s 0.4805 0.2868
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.3964 0.019 *
## OperculumPresent 0.3351 0.029 *
## RepGuild2 0.2998 0.034 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999enveso_efp <- p.adjust.envfit(enveso_ef)## Adjustment of significance by bonferroni methodenveso_efp##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.6527 -0.6941
## BodyShapeI3f 0.7703 0.5322
## BodyShapeI4e -1.2893 -0.3182
## OperculumPresentno -1.2190 -0.5445
## OperculumPresentyes 0.6966 0.3111
## RepGuild22eb -0.8320 -1.3628
## RepGuild23n -1.5060 -0.4656
## RepGuild26s 0.4805 0.2868
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.3964 0.057 .
## OperculumPresent 0.3351 0.087 .
## RepGuild2 0.2998 0.102
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999### Biogeographic
# All sites for figure
envb_ef <- envfit(envb_NMDS, FD_total_env[-c(8,20),c(58,67)], permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
envb_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## T -0.44636 -0.89485 0.6512 0.161
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## W1s 0.3441 0.3821
## W3a -1.1013 -1.2226
##
## Goodness of fit:
## r2 Pr(>r)
## W 0.1855 0.018 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envb_efp <- p.adjust.envfit(envb_ef)## Adjustment of significance by bonferroni methodenvb_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## T -0.44636 -0.89485 0.6512 0.322
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## W1s 0.3441 0.3821
## W3a -1.1013 -1.2226
##
## Goodness of fit:
## r2 Pr(>r)
## W 0.1855 0.036 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# All sites by stratification
envba_ef <- envfit(envb_NMDS, FD_total_env[-c(8,20),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
envba_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.18649 0.98246 0.0236 0.601
## Troph -0.44636 -0.89485 0.6512 0.155
## DepthMin 0.26611 0.96394 0.0213 0.568
## DepthMax 0.41126 0.91152 0.1295 0.284
## TempPrefMin 0.17525 0.98452 0.1889 0.475
## TempPrefMax -0.97424 -0.22553 0.0225 0.525
## Weight -0.96913 0.24656 0.0132 0.844
## CaudalFinLength -0.62841 -0.77788 0.0030 0.975
## DorsalSpinesMean 0.53856 0.84259 0.3114 0.608
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.0089 0.1071
## BodyShapeI3f 0.2696 0.2241
## BodyShapeI4e -0.9501 -0.8646
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.0608 -1.2424
## OperculumPresentyes 0.2496 0.2923
## FeedingPathb 0.0779 0.1295
## FeedingPathp -0.7404 -1.2302
## RepGuild11b -0.7404 -1.2302
## RepGuild12g -1.2944 -0.4555
## RepGuild13n 0.2394 0.1983
## RepGuild22eb -1.1860 -1.8664
## RepGuild23n -1.2944 -0.4555
## RepGuild26s 0.2097 0.1543
## ParentalCare3p -0.8603 -1.0217
## ParentalCare4n 0.3441 0.4087
## WaterPref1s 0.3441 0.3821
## WaterPref3a -1.1013 -1.2226
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.0872 0.752
## DemersPelag 0.0000 1.000
## OperculumPresent 0.1377 0.115
## FeedingPath 0.0476 0.393
## RepGuild1 0.0995 0.434
## RepGuild2 0.1031 0.144
## ParentalCare 0.1565 0.302
## WaterPref 0.1855 0.023 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envba_efp <- p.adjust.envfit(envba_ef)## Adjustment of significance by bonferroni methodenvba_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.18649 0.98246 0.0236 1
## Troph -0.44636 -0.89485 0.6512 1
## DepthMin 0.26611 0.96394 0.0213 1
## DepthMax 0.41126 0.91152 0.1295 1
## TempPrefMin 0.17525 0.98452 0.1889 1
## TempPrefMax -0.97424 -0.22553 0.0225 1
## Weight -0.96913 0.24656 0.0132 1
## CaudalFinLength -0.62841 -0.77788 0.0030 1
## DorsalSpinesMean 0.53856 0.84259 0.3114 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s 0.0089 0.1071
## BodyShapeI3f 0.2696 0.2241
## BodyShapeI4e -0.9501 -0.8646
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.0608 -1.2424
## OperculumPresentyes 0.2496 0.2923
## FeedingPathb 0.0779 0.1295
## FeedingPathp -0.7404 -1.2302
## RepGuild11b -0.7404 -1.2302
## RepGuild12g -1.2944 -0.4555
## RepGuild13n 0.2394 0.1983
## RepGuild22eb -1.1860 -1.8664
## RepGuild23n -1.2944 -0.4555
## RepGuild26s 0.2097 0.1543
## ParentalCare3p -0.8603 -1.0217
## ParentalCare4n 0.3441 0.4087
## WaterPref1s 0.3441 0.3821
## WaterPref3a -1.1013 -1.2226
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.0872 1.000
## DemersPelag 0.0000 1.000
## OperculumPresent 0.1377 1.000
## FeedingPath 0.0476 1.000
## RepGuild1 0.0995 1.000
## RepGuild2 0.1031 1.000
## ParentalCare 0.1565 1.000
## WaterPref 0.1855 0.391
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
envbms_ef <- envfit(envbms_NMDS, FD_total_env[c(1:6,10,12:15,17,21:23),c(6:22)], permutations = 999, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
envbms_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.57614 0.81735 0.0924 0.592
## Troph -0.84701 -0.53157 0.4169 0.175
## DepthMin 0.73778 0.67504 0.0336 0.810
## DepthMax 0.62926 0.77720 0.2900 0.215
## TempPrefMin 0.94199 0.33565 0.0941 0.650
## TempPrefMax -0.27318 -0.96196 0.0783 0.559
## Weight 0.10132 0.99485 0.0437 0.695
## CaudalFinLength 0.53420 0.84536 0.0180 0.885
## DorsalSpinesMean 0.66894 0.74331 0.1653 0.674
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -1.9564 -0.2897
## BodyShapeI3f 0.4935 0.0919
## BodyShapeI4e -0.7447 -0.1573
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.2058 -0.2431
## OperculumPresentyes 0.4385 0.0884
## FeedingPathb 0.1780 -0.0238
## FeedingPathp -1.1571 0.1545
## RepGuild11b -1.1571 0.1545
## RepGuild12g -0.2955 -0.5918
## RepGuild13n 0.2641 0.0795
## RepGuild22eb -1.9564 -0.2897
## RepGuild23n -0.2955 -0.5918
## RepGuild26s 0.2123 0.1228
## ParentalCare3p -0.9083 -0.0211
## ParentalCare4n 0.6056 0.0141
## WaterPref1s 0.5920 0.1443
## WaterPref3a -1.1839 -0.2887
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.3495 0.204
## DemersPelag 0.0000 1.000
## OperculumPresent 0.3297 0.107
## FeedingPath 0.1256 0.315
## RepGuild1 0.1773 0.534
## RepGuild2 0.2200 0.297
## ParentalCare 0.3298 0.309
## WaterPref 0.4449 0.066 .
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envbms_efp <- p.adjust.envfit(envbms_ef)## Adjustment of significance by bonferroni methodenvbms_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## MaxLengthTL 0.57614 0.81735 0.0924 1
## Troph -0.84701 -0.53157 0.4169 1
## DepthMin 0.73778 0.67504 0.0336 1
## DepthMax 0.62926 0.77720 0.2900 1
## TempPrefMin 0.94199 0.33565 0.0941 1
## TempPrefMax -0.27318 -0.96196 0.0783 1
## Weight 0.10132 0.99485 0.0437 1
## CaudalFinLength 0.53420 0.84536 0.0180 1
## DorsalSpinesMean 0.66894 0.74331 0.1653 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999
##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## BodyShapeI2s -1.9564 -0.2897
## BodyShapeI3f 0.4935 0.0919
## BodyShapeI4e -0.7447 -0.1573
## DemersPelag1r 0.0000 0.0000
## OperculumPresentno -1.2058 -0.2431
## OperculumPresentyes 0.4385 0.0884
## FeedingPathb 0.1780 -0.0238
## FeedingPathp -1.1571 0.1545
## RepGuild11b -1.1571 0.1545
## RepGuild12g -0.2955 -0.5918
## RepGuild13n 0.2641 0.0795
## RepGuild22eb -1.9564 -0.2897
## RepGuild23n -0.2955 -0.5918
## RepGuild26s 0.2123 0.1228
## ParentalCare3p -0.9083 -0.0211
## ParentalCare4n 0.6056 0.0141
## WaterPref1s 0.5920 0.1443
## WaterPref3a -1.1839 -0.2887
##
## Goodness of fit:
## r2 Pr(>r)
## BodyShapeI 0.3495 1
## DemersPelag 0.0000 1
## OperculumPresent 0.3297 1
## FeedingPath 0.1256 1
## RepGuild1 0.1773 1
## RepGuild2 0.2200 1
## ParentalCare 0.3298 1
## WaterPref 0.4449 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
envbom_ef <- envfit(envbom_NMDS, FD_total_env[c(3,6:7,9:11,13:16,18:19,23),c(13:14)], permutations = 999, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
envbom_ef##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## TempPrefMin -0.050611 -0.998720 0.6070 0.002 **
## TempPrefMax -0.092379 -0.995720 0.4269 0.012 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envbom_efp <- p.adjust.envfit(envbom_ef)## Adjustment of significance by bonferroni methodenvbom_efp##
## ***VECTORS
##
## NMDS1 NMDS2 r2 Pr(>r)
## TempPrefMin -0.050611 -0.998720 0.6070 0.004 **
## TempPrefMax -0.092379 -0.995720 0.4269 0.024 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
envbso_ef <- envfit(envbso_NMDS, FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(8,21)], permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
envbso_ef##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## OperculumPresentno -1.4614 -0.9118
## OperculumPresentyes 0.5846 0.3647
## WaterPref1s 0.8537 0.4933
## WaterPref3a -1.5367 -0.8879
##
## Goodness of fit:
## r2 Pr(>r)
## OperculumPresent 0.1931 0.078 .
## WaterPref 0.2848 0.014 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999envbso_efp <- p.adjust.envfit(envbso_ef)## Adjustment of significance by bonferroni methodenvbso_efp##
## ***FACTORS:
##
## Centroids:
## NMDS1 NMDS2
## OperculumPresentno -1.4614 -0.9118
## OperculumPresentyes 0.5846 0.3647
## WaterPref1s 0.8537 0.4933
## WaterPref3a -1.5367 -0.8879
##
## Goodness of fit:
## r2 Pr(>r)
## OperculumPresent 0.1931 0.156
## WaterPref 0.2848 0.028 *
## ---
## Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1
## Blocks: strata
## Permutation: free
## Number of permutations: 999Environment/biogeography mantel tests
We used mantel tests to determine significance between the environmental/biogeographical and trait distance matrices.
### Environmental
# All sites
FDe_dist <- gowdis(scaled_FD_total_env[-c(9,16,18,20),c(1:17)])
envea_mant <- mantel(enve_dist, FDe_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(9,16,18,20),19])
envea_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = enve_dist, ydis = FDe_dist, method = "spearman", permutations = 999, strata = env[-c(9, 16, 18, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5905
## Significance: 0.098
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.588 0.619 0.637 0.655
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
FDems_dist <- gowdis(scaled_FD_total_env[c(1:6,8,10,12:15,17,21:23),c(1:17)])
envems_mant <- mantel(envems_dist, FDems_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:6,8,10,12:15,17,21:23),19])
envems_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = envems_dist, ydis = FDems_dist, method = "spearman", permutations = 999, strata = env[c(1:6, 8, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.5362
## Significance: 0.089
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.527 0.560 0.583 0.599
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Ocean sites and mixed lakes
FDeom_dist <- gowdis(scaled_FD_total_env[c(3,6:8,10:11,13:15,19,23),c(1:7)])
enveom_mant <- mantel(enveom_dist, FDeom_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(3,6:8,10:11,13:15,19,23),19])
enveom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = enveom_dist, ydis = FDeom_dist, method = "spearman", permutations = 999, strata = env[c(3, 6:8, 10:11, 13:15, 19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.3447
## Significance: 0.099
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.336 0.448 0.520 0.571
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Stratified lakes and ocean sites
FDeso_dist <- gowdis(scaled_FD_total_env[c(1:2,4,5,7,11:12,17,19,21:22),c(1:17)])
enveso_mant <- mantel(enveso_dist, FDeso_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[c(1:2,4,5,7,11:12,17,19,21:22),19])
enveso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = enveso_dist, ydis = FDeso_dist, method = "spearman", permutations = 999, strata = env[c(1:2, 4, 5, 7, 11:12, 17, 19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.2766
## Significance: 0.069
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.253 0.292 0.319 0.346
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Adjusted p-values
enve_mant_p <- rbind(envems_mant$signif, enveom_mant$signif, enveso_mant$signif)
enve_mant_p <- enve_mant_p[,1]
enve_mant_p <- p.adjust(enve_mant_p, method = "bonferroni")
enve_mant_p## [1] 0.267 0.297 0.207### Biogeographic
# All sites for figure
FDb_dist <- gowdis(scaled_FD_total_env[-c(8,20),c(1:17)])
envba_mant <- mantel(envb_dist, FDb_dist, method = "spearman", permutations = 999, na.rm = TRUE, strata = env[-c(8,20),19])
envba_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = envb_dist, ydis = FDb_dist, method = "spearman", permutations = 999, strata = env[-c(8, 20), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.08245
## Significance: 0.354
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.163 0.191 0.219 0.246
## Blocks: strata
## Permutation: free
## Number of permutations: 999# Mixed and stratified lakes
FDbms_dist <- gowdis(scaled_FD_total_env[c(1:6,10,12:15,17,21:23),c(1:17)])
envbms_mant <- mantel(envbms_dist, FDbms_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:6,10,12:15,17,21:23),19])
envbms_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = envbms_dist, ydis = FDbms_dist, method = "spearman", permutations = 1000, strata = env[c(1:6, 10, 12:15, 17, 21:23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.1734
## Significance: 0.32268
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.332 0.387 0.444 0.498
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Ocean sites and mixed lakes
FDbom_dist <- gowdis(scaled_FD_total_env[c(3,6:7,9:11,13:16,18:19,23),c(1:7)])
envbom_mant <- mantel(envbom_dist, FDbom_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(3,6:7,9:11,13:16,18:19,23),19])
envbom_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = envbom_dist, ydis = FDbom_dist, method = "spearman", permutations = 1000, strata = env[c(3, 6:7, 9:11, 13:16, 18:19, 23), 19], na.rm = TRUE)
##
## Mantel statistic r: 0.06714
## Significance: 0.11788
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0769 0.1250 0.1734 0.2060
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Stratified lakes and ocean sites
FDbso_dist <- gowdis(scaled_FD_total_env[c(1:2,4,5,7,9,11:12,16:19,21:22),c(1:17)])
envbso_mant <- mantel(envbso_dist, FDbso_dist, method = "spearman", permutations = 1000, na.rm = TRUE, strata = env[c(1:2,4,5,7,9,11:12,16:19,21:22),19])
envbso_mant##
## Mantel statistic based on Spearman's rank correlation rho
##
## Call:
## mantel(xdis = envbso_dist, ydis = FDbso_dist, method = "spearman", permutations = 1000, strata = env[c(1:2, 4, 5, 7, 9, 11:12, 16:19, 21:22), 19], na.rm = TRUE)
##
## Mantel statistic r: -0.05808
## Significance: 0.31369
##
## Upper quantiles of permutations (null model):
## 90% 95% 97.5% 99%
## 0.0116 0.0456 0.0607 0.0794
## Blocks: strata
## Permutation: free
## Number of permutations: 1000# Adjusted p-values
envb_mant_p <- rbind(envbms_mant$signif, envbom_mant$signif, envbso_mant$signif)
envb_mant_p <- envb_mant_p[,1]
envb_mant_p <- p.adjust(envb_mant_p, method = "bonferroni")
envb_mant_p## [1] 0.9680320 0.3536464 0.9410589Plot environmental/biogeographical NMDS and envfit results
Includes a plot of correlated trait variables
enve_NMDS_data.scores <- as.data.frame(scores(enve_NMDS))
enve_NMDS_data.scores$Stratification <- env[-c(9,16,18,20),19]
enve_NMDS_data.scores$Lakes <- env[-c(9,16,18,20),1]
enve_NMDS_data.scores$Stratification <- factor(enve_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))
# enve_ef_coord_cont <- as.data.frame(scores(enve_ef, "vectors")) * ordiArrowMul(enve_ef)
# enve_ef_coord_cat = as.data.frame(scores(enve_ef, "factors")) * ordiArrowMul(enve_ef)
enve_ef_plot <- ggplot(data = enve_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
geom_point(data = enve_NMDS_data.scores, aes(color = Stratification), size = 4, alpha = 1) +
geom_text_repel(data = enve_NMDS_data.scores, label = enve_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = enve_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD3333") +
# geom_text(data = enve_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
# color = "#CD3333", label = row.names(enve_ef_coord_cont), size = 7) +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = enve_ef_coord_cat, linewidth =1, alpha = 0.2, color = "#8B6508") +
# geom_text(data = enve_ef_coord_cat, aes(x = NMDS1, y = NMDS2),
# color = "#8B6508", label = row.names(enve_ef_coord_cat), size = 7, check_overlap = T) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = 1.35, y = 1.55, size = 6,
# label = paste("Stress: ", round(enve_NMDS$stress, digits = 2))) +
labs(color = "Stratification", tag = "A")
enve_ef_plot <- enve_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
enve_ef_plot## Too few points to calculate an ellipse## Warning: Removed 1 row containing missing values (`geom_path()`).
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/enve_ef_plot.png", enve_ef_plot, width = 8, height = 4, units = "in")## Too few points to calculate an ellipse## Warning: Removed 1 row containing missing values (`geom_path()`).## Warning: ggrepel: 1 unlabeled data points (too many overlaps). Consider
## increasing max.overlapsenvb_NMDS_data.scores <- as.data.frame(scores(envb_NMDS))
envb_NMDS_data.scores$Stratification <- env[-c(8,20),19]
envb_NMDS_data.scores$Lakes <- env[-c(8,20),1]
envb_NMDS_data.scores$Stratification <- factor(envb_NMDS_data.scores$Stratification, levels = c("Ocean", "Mixed", "Stratified"))
# envb_ef_coord_cont <- as.data.frame(scores(envb_ef, "vectors")) * ordiArrowMul(envb_ef)
# envb_ef_coord_cat = as.data.frame(scores(envb_ef, "factors")) * ordiArrowMul(envb_ef)
envb_ef_plot <- ggplot(data = envb_NMDS_data.scores, aes(x = NMDS1, y = NMDS2, color = Stratification)) +
stat_ellipse(aes(x = NMDS1, y = NMDS2, color = Stratification),level = 0.50) +
geom_point(data = envb_NMDS_data.scores, aes(color = Stratification), size = 3, alpha = 1) +
geom_text_repel(data = envb_NMDS_data.scores, label = envb_NMDS_data.scores$Lakes, size = 7, point.padding = 3) +
scale_color_viridis(alpha = 1, begin = 0.45, end = 0.75, discrete = T, option = "G") +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = envb_ef_coord_cont, linewidth =1, alpha = 0.2, color = "#CD3333") +
# geom_text(data = envb_ef_coord_cont, aes(x = NMDS1, y = NMDS2),
# color = "#CD3333", label = row.names(envb_ef_coord_cont), size = 7) +
# geom_segment(aes(x = 0, y = 0, xend = NMDS1, yend = NMDS2),
# data = envb_ef_coord_cat, linewidth =1, alpha = 0.2, color = "#8B6508") +
# geom_text(data = envb_ef_coord_cat, aes(x = NMDS1, y = NMDS2),
# color = "#8B6508", label = row.names(envb_ef_coord_cat), size = 7, check_overlap = T) +
theme(text = element_text(size = 22), legend.text = element_text(size = 22),
panel.background = element_blank(), panel.border = element_rect(fill = NA),
axis.ticks = element_blank(), axis.text = element_blank(), legend.key = element_blank()) +
# annotate(geom = "label", x = 5.9, y = 1.59, size = 6,
# label = paste("Stress: ", round(envb_NMDS$stress, digits = 2))) +
labs(color = "Stratification", tag = "B")
envb_ef_plot <- envb_ef_plot + guides(color = guide_legend(override.aes = list(label = "")))
envb_ef_plot
ggsave("/Users/bailey/Documents/research/fish_biodiversity/figures/stratification_NMDS_envfit_plots/envb_ef_plot.png", envb_ef_plot, width = 8, height = 4, units = "in")sessionInfo()## R version 4.3.1 (2023-06-16)
## Platform: aarch64-apple-darwin20 (64-bit)
## Running under: macOS Ventura 13.4.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: America/Los_Angeles
## tzcode source: internal
##
## attached base packages:
## [1] parallel stats graphics grDevices utils datasets methods
## [8] base
##
## other attached packages:
## [1] adespatial_0.3-23 picante_1.8.2 nlme_3.1-164
## [4] pairwiseAdonis_0.4.1 cluster_2.1.6 FD_1.0-12.3
## [7] geometry_0.4.7 ade4_1.7-22 vegan_2.6-4
## [10] lattice_0.22-5 permute_0.9-7 ggrepel_0.9.4
## [13] viridis_0.6.4 viridisLite_0.4.2 ggplot2_3.4.4
## [16] tidyr_1.3.0 phytools_2.0-3 maps_3.4.1.1
## [19] ape_5.7-1 reshape2_1.4.4 stringr_1.5.1
## [22] dplyr_1.1.4 knitr_1.45
##
## loaded via a namespace (and not attached):
## [1] RColorBrewer_1.1-3 wk_0.9.1 rstudioapi_0.15.0
## [4] jsonlite_1.8.8 magrittr_2.0.3 farver_2.1.1
## [7] rmarkdown_2.25 adegraphics_1.0-21 ragg_1.2.6
## [10] vctrs_0.6.5 spdep_1.3-1 htmltools_0.5.7
## [13] progress_1.2.3 s2_1.1.5 adegenet_2.1.10
## [16] sass_0.4.8 spData_2.3.0 KernSmooth_2.23-22
## [19] bslib_0.6.1 adephylo_1.1-16 plyr_1.8.9
## [22] cachem_1.0.8 uuid_1.1-1 igraph_1.5.1
## [25] mime_0.12 lifecycle_1.0.4 iterators_1.0.14
## [28] pkgconfig_2.0.3 Matrix_1.6-4 R6_2.5.1
## [31] fastmap_1.1.1 shiny_1.8.0 magic_1.6-1
## [34] digest_0.6.33 numDeriv_2016.8-1.1 colorspace_2.1-0
## [37] phylobase_0.8.10 textshaping_0.3.7 labeling_0.4.3
## [40] clusterGeneration_1.3.8 fansi_1.0.6 httr_1.4.7
## [43] abind_1.4-5 mgcv_1.9-0 compiler_4.3.1
## [46] proxy_0.4-27 withr_2.5.2 doParallel_1.0.17
## [49] optimParallel_1.0-2 DBI_1.1.3 highr_0.10
## [52] MASS_7.3-60 classInt_0.4-10 scatterplot3d_0.3-44
## [55] tools_4.3.1 units_0.8-5 rncl_0.8.7
## [58] httpuv_1.6.13 glue_1.6.2 quadprog_1.5-8
## [61] promises_1.2.1 grid_4.3.1 sf_1.0-14
## [64] generics_0.1.3 seqinr_4.2-36 gtable_0.3.4
## [67] class_7.3-22 hms_1.1.3 sp_2.1-2
## [70] xml2_1.3.6 utf8_1.2.4 foreach_1.5.2
## [73] pillar_1.9.0 later_1.3.2 splines_4.3.1
## [76] deldir_2.0-2 tidyselect_1.2.0 gridExtra_2.3
## [79] xfun_0.41 expm_0.999-8 stringi_1.8.2
## [82] boot_1.3-28.1 yaml_2.3.7 evaluate_0.23
## [85] codetools_0.2-19 interp_1.1-5 tibble_3.2.1
## [88] cli_3.6.1 xtable_1.8-4 systemfonts_1.0.5
## [91] munsell_0.5.0 jquerylib_0.1.4 Rcpp_1.0.11
## [94] coda_0.19-4 png_0.1-8 XML_3.99-0.16
## [97] ellipsis_0.3.2 RNeXML_2.4.11 prettyunits_1.2.0
## [100] latticeExtra_0.6-30 jpeg_0.1-10 phangorn_2.11.1
## [103] scales_1.3.0 e1071_1.7-14 purrr_1.0.2
## [106] crayon_1.5.2 combinat_0.0-8 rlang_1.1.2
## [109] fastmatch_1.1-4 mnormt_2.1.1Extra unused code
lakes <- traits_sesmpd_env[,1]
#traits_sesmpd_env$obs.z <- traits_sesmpd_env$mpd.obs.z
t_mpd.obs.z <- traits_sesmpd_env[,7]
#traits_sesmntd_env$obs.z <- traits_sesmntd_env$mntd.obs.z
t_mntd.obs.z <- traits_sesmntd_env[,7]
#traits_sespd_env$obs.z <- traits_sespd_env$pd.obs.z
t_pd.obs.z <- traits_sespd_env[,7]
#phylo_sesmpd_env$obs.z <- phylo_sesmpd_env$mpd.obs.z
p_mpd.obs.z <- phylo_sesmpd_env[,7]
#phylo_sesmntd_env$obs.z <- phylo_sesmntd_env$mntd.obs.z
p_mntd.obs.z <- phylo_sesmntd_env[,7]
#phylo_sespd_env$obs.z <- phylo_sespd_env$pd.obs.z
p_pd.obs.z <- phylo_sespd_env[,7]
p_sespd_env <- phylo_sespd_env[,c(10:40)]
tp_z_env <- cbind(lakes, t_mpd.obs.z, t_mntd.obs.z, t_pd.obs.z, p_mpd.obs.z, p_mntd.obs.z, p_pd.obs.z, p_sespd_env)
row.names(tp_z_env) <- tp_z_env$lakes
lakes_sub <- straits_sesmpd_env[,1]
#straits_sesmpd_env$obs.z <- straits_sesmpd_env$mpd.obs.z
tsub_mpd.obs.z <- straits_sesmpd_env[,7]
#straits_sesmntd_env$obs.z <- straits_sesmntd_env$mntd.obs.z
tsub_mntd.obs.z <- straits_sesmntd_env[,7]
#straits_sespd_env$obs.z <- straits_sespd_env$pd.obs.z
tsub_pd.obs.z <- straits_sespd_env[,7]
#sphylo_sesmpd_env$obs.z <- sphylo_sesmpd_env$mpd.obs.z
psub_mpd.obs.z <- sphylo_sesmpd_env[,7]
#sphylo_sesmntd_env$obs.z <- sphylo_sesmntd_env$mntd.obs.z
psub_mntd.obs.z <- sphylo_sesmntd_env[,7]
#sphylo_sespd_env$obs.z <- sphylo_sespd_env$pd.obs.z
psub_pd.obs.z <- sphylo_sespd_env[,7]
psub_sespd_env <- sphylo_sespd_env[,c(10:40)]
stp_z_env <- cbind(lakes_sub, tsub_mpd.obs.z, tsub_mntd.obs.z, tsub_pd.obs.z, psub_mpd.obs.z, psub_mntd.obs.z, psub_pd.obs.z, psub_sespd_env)
row.names(stp_z_env) <- stp_z_env$lakes_sub
t_z_dist <- vegdist(tp_z_env[,c(2:4)], method = "euclidean")
p_z_dist <- vegdist(tp_z_env[,c(5:7)], method = "euclidean")
st_z_dist <- vegdist(stp_z_env[,c(2:4)], method = "euclidean")
sp_z_dist <- vegdist(stp_z_env[,c(5:7)], method = "euclidean")
groups <- env[,19]
t_z_bd <- betadisper(t_z_dist, groups)
anova(t_z_bd)
permutest(t_z_bd, pairwise = TRUE)
(t_z_bd.HSD <- TukeyHSD(t_z_bd))
boxplot(t_z_bd)
groups <- env[-c(20),19]
st_z_bd <- betadisper(st_z_dist, groups)
anova(st_z_bd)
permutest(st_z_bd, pairwise = TRUE)
(st_z_bd.HSD <- TukeyHSD(st_z_bd))
boxplot(st_z_bd)